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WO2001090127A3 - Haplotypes of the hoxd3 gene - Google Patents

Haplotypes of the hoxd3 gene Download PDF

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Publication number
WO2001090127A3
WO2001090127A3 PCT/US2001/016982 US0116982W WO0190127A3 WO 2001090127 A3 WO2001090127 A3 WO 2001090127A3 US 0116982 W US0116982 W US 0116982W WO 0190127 A3 WO0190127 A3 WO 0190127A3
Authority
WO
WIPO (PCT)
Prior art keywords
haplotypes
hoxd3
gene
disclosed
hoxd3 gene
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2001/016982
Other languages
French (fr)
Other versions
WO2001090127A2 (en
Inventor
Amy Duda
Amir Kazemi
Beena Koshy
Anant Madan Kumar
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Cogenics Inc
Original Assignee
Genaissance Pharmaceuticals Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Genaissance Pharmaceuticals Inc filed Critical Genaissance Pharmaceuticals Inc
Priority to AU2001264966A priority Critical patent/AU2001264966A1/en
Publication of WO2001090127A2 publication Critical patent/WO2001090127A2/en
Publication of WO2001090127A3 publication Critical patent/WO2001090127A3/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6881—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • A—HUMAN NECESSITIES
    • A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01K—ANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K2217/00—Genetically modified animals
    • A01K2217/05—Animals comprising random inserted nucleic acids (transgenic)
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/172—Haplotypes
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Physics & Mathematics (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Organic Chemistry (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Evolutionary Biology (AREA)
  • Wood Science & Technology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Immunology (AREA)
  • Zoology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Cell Biology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)

Abstract

Novel genetic variants of the Homeo Box D3 (HOXD3) gene are described. Various genotypes, haplotypes, and haplotype pairs that exist in the general United States population are disclosed for the HOXD3 gene. Compositions and methods for haplotyping and/or genotyping the HOXD3 gene in an individual are also disclosed. Polynucleotides defined by the sequence of the haplotypes disclosed herein are also described.
PCT/US2001/016982 2000-05-25 2001-05-24 Haplotypes of the hoxd3 gene Ceased WO2001090127A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2001264966A AU2001264966A1 (en) 2000-05-25 2001-05-24 Haplotypes of the hoxd3 gene

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US20707600P 2000-05-25 2000-05-25
US60/207,076 2000-05-25

Publications (2)

Publication Number Publication Date
WO2001090127A2 WO2001090127A2 (en) 2001-11-29
WO2001090127A3 true WO2001090127A3 (en) 2002-03-28

Family

ID=22769113

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/016982 Ceased WO2001090127A2 (en) 2000-05-25 2001-05-24 Haplotypes of the hoxd3 gene

Country Status (2)

Country Link
AU (1) AU2001264966A1 (en)
WO (1) WO2001090127A2 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7157439B2 (en) * 2001-06-14 2007-01-02 The Regents Of The University Of California HoxD3, HoxA3, and HoxB3 compositions and methods for improved wound healing
US7544670B2 (en) 2001-06-14 2009-06-09 The Regents Of The University Of California HoxD3, HoxA3 and HoxB3 compositions and methods for improved wound healing

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
DATABASE GENBANK [online] 26 June 1997 (1997-06-26), CIANETTI L., XP002905146, accession no. NCBI Database accession no. Y09980 *
DATABASE SNP [online] NATIONAL LIBRARY OF MEDICINE, (BETHESDA, MD, USA); 13 September 2000 (2000-09-13), XP002905147, retrieved from 1527870 accession no. NCBI Database accession no. 1051929 *
TANIGUCHI ET AL.: "Cloning and sequencing of the human homeobox gene HOX4A", BIOCHIMICA ET BIOPHYSICA ACTA, vol. 1132, 1992, pages 332 - 334, XP002905145 *
TANIGUCHI ET AL.: "Structural analysis of the human HOX4A homeobox gene", NUCLEIC ACIDS SYMPOSIUM SERIES, vol. 25, 1991, pages 31 - 32, XP002905144 *

Also Published As

Publication number Publication date
AU2001264966A1 (en) 2001-12-03
WO2001090127A2 (en) 2001-11-29

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