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add type hints to commands
#4594mashehu opened Nov 5, 2026Member
1
limit get_wf_files to only consider files not ignored by git
#4593mashehu opened Nov 5, 2026Member
2
Simplify prettier formatting code
#4591mashehu opened Nov 4, 2026Member
6
move Path | str to just Path and simplify downstream code
#4590mashehu opened Nov 4, 2026Member
6
fix: allow underscores in GitHub username validation
#4582swastiktawate opened Nov 2, 2026
1
Update pre-commit hooks
#4577renovate[bot] opened Nov 1, 2026Bot1 task
2
Fix argument names in validate_file_md5, get_commit_info and init_mod_name docstrings
#4566mmporong opened Oct 28, 20261 of 4 tasks
1
Lock file maintenance
#4562renovate[bot] opened Oct 26, 2026Bot1 task
2
fix(modules): support container builds for installed nf-core modules
#4551Daesun-Ryu opened Oct 24, 20262 of 4 tasks
2
fix(component): fix included component names for external orgs
#4531prototaxites opened Oct 20, 2026Contributor1 of 4 tasks 4.3.0
1
Experimental: scaffold AWS full test output snapshots
#4524adamrtalbot opened Oct 16, 2026Contributor3 of 4 tasks
1
Overhaul pipeline template docs structure
#4522jfy133 opened Oct 16, 2026Member4 tasks
2
Resolve template merge conflicts in nf-core pipelines sync
#4519paulinefx opened Oct 15, 2026
4
Add ${params.XXX} and ${projectDir} interpolation when comparing schema and config default params values.
#4505LouisLeNezet opened Oct 8, 2026Contributor4 tasks 4.3.0
5
Add -w/--fail-warned to nf-core pipelines schema lint
#4503qiaobochi040726-source opened Oct 8, 2026 4.3.0
1
refractor: add nf-schema comment to the plugin import and sample sheet channel generation
#4497rarestpreet opened Oct 6, 20262 of 4 tasks 4.3.0
Add a pre-commit hook that disallows the .view() operator
#4496prototaxites opened Oct 5, 2026Contributor4 tasks
7
fix(lint): respect ignore_configs for multiqc_config's export_plots check
#4492jtremblay opened Oct 2, 20261 of 4 tasks
6
Skip included names that are not installed components when recreating installed_by
#4491pinin4fjords opened Oct 2, 2026Member4 tasks done
7
Template: add metro-map workflow diagram feature
#4478ewels opened Sep 21, 2026Member4 of 5 tasks 4.3.0
3
Preserve hand-written entries when regenerating container configs
#4476pinin4fjords opened Sep 21, 2026Member5 tasks done 4.3.0
2
Add docs_pages lint test
#4475erikrikarddaniel opened Sep 19, 2026Member4 tasks done 4.3.0
1
fix: validate manifest.name format when loading pipeline config
#4470kokhlo opened Sep 15, 2026
7
Signal EDAM load failure and widen the extension map
#4469TilakSharma07 opened Sep 11, 2026
1
fix: guard against empty pipeline name in files_exist lint
#4466abhi-0203 opened Sep 7, 2026

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Repository navigation

All pull requests

add type hints to commands

limit get_wf_files to only consider files not ignored by git

Simplify prettier formatting code

move `Path | str` to just `Path` and simplify downstream code

fix: allow underscores in GitHub username validation

Update pre-commit hooks

Fix argument names in validate_file_md5, get_commit_info and init_mod_name docstrings

Lock file maintenance

fix(modules): support container builds for installed nf-core modules

fix(component): fix included component names for external orgs

Experimental: scaffold AWS full test output snapshots

Overhaul pipeline template docs structure

Resolve template merge conflicts in `nf-core pipelines sync`

Add `${params.XXX}` and `${projectDir}` interpolation when comparing schema and config default params values.

Add -w/--fail-warned to nf-core pipelines schema lint

refractor: add nf-schema comment to the plugin import and sample sheet channel generation

Add a pre-commit hook that disallows the .view() operator

fix(lint): respect ignore_configs for multiqc_config's export_plots check

Skip included names that are not installed components when recreating installed_by

Template: add metro-map workflow diagram feature

Preserve hand-written entries when regenerating container configs

Add docs_pages lint test

fix: validate manifest.name format when loading pipeline config

Signal EDAM load failure and widen the extension map

fix: guard against empty pipeline name in files_exist lint

Pull requests