8000 add type hints to commands by mashehu · Pull Request #4594 · nf-core/tools · GitHub
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add type hints to commands - #4594

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mashehu wants to merge 12 commits into
nf-core:devfrom
mashehu:add-typehints-to-commands
Draft

add type hints to commands#4594
mashehu wants to merge 12 commits into
nf-core:devfrom
mashehu:add-typehints-to-commands

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@mashehu
@mashehu mashehu commented Nov 5, 2026
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Follow up on #4590

@codecov
codecov Bot commented Nov 5, 2026 •
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Codecov Report

❌ Patch coverage is 76.82927% with 38 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.75%. Comparing base (1b76bb3) to head (b29ea7c).
⚠️ Report is 4 commits behind head on dev.

Files with missing lines Patch % Lines
nf_core/commands_modules.py 0.00% 16 Missing ⚠️
nf_core/commands_subworkflows.py 0.00% 11 Missing ⚠️
nf_core/__main__.py 95.23% 3 Missing ⚠️
nf_core/commands_test_datasets.py 0.00% 3 Missing ⚠️
nf_core/components/nfcore_component.py 80.00% 1 Missing ⚠️
nf_core/modules/lint/meta_yml.py 75.00% 1 Missing ⚠️
nf_core/pipelines/create/create.py 85.71% 1 Missing ⚠️
nf_core/pipelines/create/utils.py 88.88% 1 Missing ⚠️
nf_core/pipelines/launch.py 83.33% 1 Missing ⚠️

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@mashehu
mashehu force-pushed the add-typehints-to-commands branch from f4742e2 to b29ea7c Compare November 5, 2026 12:33

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