| forna (force-directed RNA): Simple and Effective Online RNA Secondary Structure Diagrams P Kerpedjiev, S Hammer, IL Hofacker Bioinformatics, 2015 | 608 | 2015 |
| Computational Design of RNAs with Complex Energy Landscapes CH zu Siederdissen, S Hammer, I Abfalter, IL Hofacker, C Flamm, ... Biopolymers, 2013 | 46 | 2013 |
| Fixed-parameter tractable sampling for RNA design with multiple target structures S Hammer, W Wang, S Will, Y Ponty BMC Bioinformatics 20 (1), 209, 2019 | 40 | 2019 |
| RNAblueprint: Flexible multiple target nucleic acid sequence design S Hammer, B Tschiatschek, C Flamm, IL Hofacker, S Findeiß Bioinformatics, 2017 | 32 | 2017 |
| Thermodynamic and kinetic folding of riboswitches S Badelt, S Hammer, C Flamm, IL Hofacker Methods in Enzymology 553, 193-213, 2015 | 23 | 2015 |
| In silico design of ligand triggered RNA switches S Findeiß, S Hammer, MT Wolfinger, F Kühnl, C Flamm, IL Hofacker Methods, 2018 | 19 | 2018 |
| Evolving methods for rational de novo design of functional RNA molecules S Hammer, C Günzel, M Mörl, S Findeiß Methods, 2019 | 16 | 2019 |
| Molecular circadian rhythms are robust in marine annelids lacking rhythmic behavior NS Häfker, L Holcik, AM Mat, A Ćorić, K Vadiwala, I Beets, AW Stockinger, ... Plos Biology 22 (4), e3002572, 2024 | 10 | 2024 |
| Ligand-dependent tRNA processing by a rationally designed RNase P riboswitch A Ender, M Etzel, S Hammer, S Findeiß, P Stadler, M Mörl Nucleic acids research 49 (3), 1784-1800, 2021 | 7 | 2021 |
| DrForna: visualization of cotranscriptional folding AR Tănasie, P Kerpedjiev, S Hammer, S Badelt Bioinformatics 39 (9), btad555, 2023 | 3 | 2023 |
| Advanced design of structural RNAs using RNARedPrint Y Ponty, S Hammer, HT Yao, S Will RNA Bioinformatics, 1-15, 2012 | 3 | 2012 |
| Target tissues of melatonin and PDF in Platynereis S Hammer University of Vienna, 2012 | 2 | 2012 |
| Dynamic Knowledge Graph-based Measurement of Data Quality J Schrott, R Meindl, C Lettner, S Hammer, M Leitner Proceedings of the VLDB Endowment. ISSN 2150, 8097, 2025 | | 2025 |
| In silico design of a ligand triggered RNA switch S Hammer, S Findeiß interaction 5, 3, 2019 | | 2019 |
| FPT counting and uniform sampling Y Ponty, S Will, S Hammer | | 2019 |
| Nucleic Acids design targeting integer-valued features: FPT counting and uniform sampling Y Ponty, S Will, S Hammer WEPA 2018-2nd International Workshop on Enumeration Problems and Applications, 2018 | | 2018 |
| Design of context-sensitive, multi-stable RNA molecules S Hammer University of Vienna, 2018 | | 2018 |
Ivo HofackerUniversity of ViennaVerified email at tbi.univie.ac.at
