| Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2 A Popa, JW Genger, MD Nicholson, T Penz, D Schmid, SW Aberle, ... Science Translational Medicine 12 (573), 2020 | 260 | 2020 |
| Barrier trees of degenerate landscapes C Flamm, IL Hofacker, PF Stadler, MT Wolfinger Zeitschrift für Physikalische Chemie 216 (2), 155, 2002 | 251 | 2002 |
| Predicting RNA secondary structures from sequence and probing data R Lorenz, MT Wolfinger, A Tanzer, IL Hofacker Methods 103, 86-98, 2016 | 148 | 2016 |
| Efficient computation of RNA folding dynamics MT Wolfinger, WA Svrcek-Seiler, C Flamm, IL Hofacker, PF Stadler Journal of Physics A: Mathematical and General 37 (17), 4731, 2004 | 140 | 2004 |
| SHAPE directed RNA folding R Lorenz, D Luntzer, IL Hofacker, PF Stadler, MT Wolfinger Bioinformatics 32 (1), 145-147, 2016 | 125 | 2016 |
| Folding kinetics of large RNAs M Geis, C Flamm, MT Wolfinger, A Tanzer, IL Hofacker, M Middendorf, ... Journal of Molecular Biology 379 (1), 160-173, 2008 | 109 | 2008 |
| Interplay between the catabolite repression control protein Crc, Hfq and RNA in Hfq-dependent translational regulation in Pseudomonas aeruginosa E Sonnleitner, A Wulf, S Campagne, XY Pei, MT Wolfinger, G Forlani, ... Nucleic acids research 46 (3), 1470-1485, 2018 | 99 | 2018 |
| TSSAR: TSS annotation regime for dRNA-seq data F Amman, MT Wolfinger, R Lorenz, IL Hofacker, PF Stadler, S Findeiß BMC Bioinformatics 15 (1), 1-11, 2014 | 74 | 2014 |
| Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific Reports 6 (1), 1-17, 2016 | 73 | 2016 |
| Functional RNA structures in the 3′ UTR of tick-borne, insect-specific and no-known-vector flaviviruses R Ochsenreiter, IL Hofacker, MT Wolfinger Viruses 11 (3), 298, 2019 | 68 | 2019 |
| The MazF-regulon: a toolbox for the post-transcriptional stress response in Escherichia coli M Sauert, MT Wolfinger, O Vesper, C Müller, K Byrgazov, I Moll Nucleic Acids Research 44 (14), 6660-6675, 2016 | 68 | 2016 |
| BarMap: RNA folding on dynamic energy landscapes IL Hofacker, C Flamm, C Heine, MT Wolfinger, G Scheuermann, ... RNA 16 (7), 1308-1316, 2010 | 64 | 2010 |
| Updated phylogeny of chikungunya virus suggests lineage-specific RNA architecture A de Bernardi Schneider, R Ochsenreiter, R Hostager, IL Hofacker, ... Viruses 11 (9), 798, 2019 | 62 | 2019 |
| NMR structural profiling of transcriptional intermediates reveals riboswitch regulation by metastable RNA conformations C Helmling, A Wacker, MT Wolfinger, IL Hofacker, M Hengesbach, ... Journal of the American Chemical Society 139 (7), 2647-2656, 2017 | 59 | 2017 |
| RNASeq Based Transcriptional Profiling of Pseudomonas aeruginosa PA14 after Short- and Long-Term Anoxic Cultivation in Synthetic Cystic Fibrosis Sputum … M Tata, MT Wolfinger, F Amman, N Roschanski, A Dötsch, E Sonnleitner, ... PLoS One 11 (1), e0147811, 2016 | 59 | 2016 |
| Cross-regulation by CrcZ RNA controls anoxic biofilm formation in Pseudomonas aeruginosa P Pusic, M Tata, MT Wolfinger, E Sonnleitner, S Häussler, U Bläsi Scientific Reports 6 (1), 1-8, 2016 | 49 | 2016 |
| General and microRNA-mediated mRNA degradation occurs on ribosome complexes in Drosophila cells S Antic, MT Wolfinger, A Skucha, S Hosiner, S Dorner Molecular and Cellular Biology 35 (13), 2309-2320, 2015 | 49 | 2015 |
| Exact folding dynamics of RNA secondary structures MT Wolfinger, WA Svrcek-Seiler, C Flamm, IL Hofacker, PF Stadler J. Phys. A: Math 37, 4731-4741, 2004 | 45 | 2004 |
| ViennaNGS: A toolbox for building efficient next-generation sequencing analysis pipelines MT Wolfinger, J Fallmann, F Eggenhofer, F Amman F1000Research 4, 50, 2015 | 43 | 2015 |
| Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction C Flamm, J Wielach, MT Wolfinger, S Badelt, R Lorenz, IL Hofacker Frontiers in Bioinformatics 2, 835422, 2022 | 36 | 2022 |
Ivo HofackerUniversity of ViennaVerified email at tbi.univie.ac.at
