| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1564 | 2018 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1158 | 2010 |
| RNAalifold: improved consensus structure prediction for RNA alignments SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler BMC bioinformatics 9 (1), 474, 2008 | 759 | 2008 |
| Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen PLoS computational biology 3 (4), e65, 2007 | 619 | 2007 |
| LocARNA-P: accurate boundary prediction and improved detection of structural RNAs S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen Rna 18 (5), 900-914, 2012 | 446 | 2012 |
| Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA C Smith, S Heyne, AS Richter, S Will, R Backofen Nucleic acids research 38 (suppl_2), W373-W377, 2010 | 252 | 2010 |
| CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems SJ Lange, OS Alkhnbashi, D Rose, S Will, R Backofen Nucleic acids research 41 (17), 8034-8044, 2013 | 176 | 2013 |
| Freiburg RNA tools: a central online resource for RNA-focused research and teaching M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ... Nucleic acids research 46 (W1), W25-W29, 2018 | 170 | 2018 |
| Excluding symmetries in constraint-based search R Backofen, S Will International Conference on Principles and Practice of Constraint …, 1999 | 167 | 1999 |
| A constraint-based approach to fast and exact structure prediction in three-dimensional protein models R Backofen, S Will Constraints 11 (1), 5-30, 2006 | 139 | 2006 |
| The SARS-CoV-2 subgenome landscape and its novel regulatory features D Wang, A Jiang, J Feng, G Li, D Guo, M Sajid, K Wu, Q Zhang, Y Ponty, ... Molecular cell 81 (10), 2135-2147. e5, 2021 | 131 | 2021 |
| Variations on RNA folding and alignment: lessons from Benasque AF Bompfünewerer, R Backofen, SH Bernhart, J Hertel, IL Hofacker, ... Journal of mathematical biology 56 (1), 129-144, 2008 | 120 | 2008 |
| Recent advances in RNA folding J Fallmann, S Will, J Engelhardt, B Grüning, R Backofen, PF Stadler Journal of biotechnology 261, 97-104, 2017 | 109 | 2017 |
| Design of artificial riboswitches as biosensors S Findeiß, M Etzel, S Will, M Mörl, PF Stadler Sensors 17 (9), 1990, 2017 | 100 | 2017 |
| Temperature-responsive in vitro RNA structurome of Yersinia pseudotuberculosis F Righetti, AM Nuss, C Twittenhoff, S Beele, K Urban, S Will, SH Bernhart, ... Proceedings of the National Academy of Sciences 113 (26), 7237-7242, 2016 | 96 | 2016 |
| RNAs everywhere: Genome‐wide annotation of structured RNAs R Backofen, SH Bernhart, C Flamm, C Fried, G Fritzsch, J Hackermüller, ... Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007 | 94 | 2007 |
| Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets. R Backofen, S Will, E Bornberg-Bauer Bioinformatics (Oxford, England) 15 (3), 234-242, 1999 | 88 | 1999 |
| Computational analysis of noncoding RNAs S Washietl, S Will, DA Hendrix, LA Goff, JL Rinn, B Berger, M Kellis Wiley Interdisciplinary Reviews: RNA 3 (6), 759-778, 2012 | 74 | 2012 |
| Applicability of a computational design approach for synthetic riboswitches G Domin, S Findeiß, M Wachsmuth, S Will, PF Stadler, M Mörl Nucleic acids research 45 (7), 4108-4119, 2017 | 71 | 2017 |
| SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics S Will, C Otto, M Miladi, M Möhl, R Backofen Bioinformatics 31 (15), 2489-2496, 2015 | 68 | 2015 |
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
