| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1564 | 2018 |
| Protein Kinase A Activation Promotes Cancer Cell Resistance to Glucose Starvation and Anoikis R Palorini, G Votta, Y Pirola, H De Vitto, S De Palma, C Airoldi, M Vasso, ... PLoS genetics 12 (3), e1005931, 2016 | 100 | 2016 |
| Computational graph pangenomics: a tutorial on data structures and their applications JA Baaijens, P Bonizzoni, C Boucher, G Della Vedova, Y Pirola, R Rizzi, ... Natural Computing 21 (1), 81-108, 2022 | 74 | 2022 |
| Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ... Quantitative Biology 7 (4), 278-292, 2019 | 67 | 2019 |
| HapCol: accurate and memory-efficient haplotype assembly from long reads Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni Bioinformatics 32 (11), 1610-1617, 2016 | 59 | 2016 |
| A comprehensive view of fitness landscapes with neutrality and fitness clouds L Vanneschi, M Tomassini, P Collard, S Vérel, Y Pirola, G Mauri European Conference on Genetic Programming, 241-250, 2007 | 47 | 2007 |
| On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria Journal of Computational Biology, 2016 | 43 | 2016 |
| Variants of constrained longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, Y Pirola Information processing letters 110 (20), 877-881, 2010 | 40 | 2010 |
| A quantitative study of neutrality in GP boolean landscapes L Vanneschi, Y Pirola, P Collard Proceedings of the 8th annual conference on Genetic and evolutionary …, 2006 | 35 | 2006 |
| Detecting alternative gene structures from spliced ESTs: a computational approach P Bonizzoni, G Mauri, G Pesole, E Picardi, Y Pirola, R Rizzi Journal of computational biology 16 (1), 43-66, 2009 | 26 | 2009 |
| Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs S Beretta, P Bonizzoni, G Della Vedova, Y Pirola, R Rizzi Journal of Computational Biology 16 (1), 16-40, 2013 | 25 | 2013 |
| FSG: Fast String Graph Construction for De Novo Assembly P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi Journal of Computational Biology 24 (10), 953-968, 2017 | 24 | 2017 |
| Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations F Biscarini, H Schwarzenbacher, H Pausch, EL Nicolazzi, Y Pirola, ... BMC Genomics 17 (1), 857, 2016 | 21 | 2016 |
| A study of the neutrality of Boolean function landscapes in genetic programming L Vanneschi, Y Pirola, G Mauri, M Tomassini, P Collard, S Verel Theoretical Computer Science 425, 34-57, 2012 | 21 | 2012 |
| Multithread Multistring Burrows–Wheeler Transform and Longest Common Prefix Array P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi Journal of Computational Biology 26 (9), 948-961, 2019 | 20 | 2019 |
| LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi Journal of Computational Biology 23 (3), 137-149, 2016 | 19 | 2016 |
| Covering pairs in directed acyclic graphs N Beerenwinkel, S Beretta, P Bonizzoni, R Dondi, Y Pirola The Computer Journal 58 (7), 1673-1686, 2015 | 18 | 2015 |
| An External-Memory Algorithm for String Graph Construction P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi Algorithmica 78 (2), 394-424, 2017 | 14 | 2017 |
| On the fixed parameter tractability and approximability of the minimum error correction problem P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria Combinatorial Pattern Matching: 26th Annual Symposium, CPM 2015, Ischia …, 2015 | 14 | 2015 |
| Parameterized complexity of k-anonymity: hardness and tractability P Bonizzoni, G Della Vedova, R Dondi, Y Pirola Journal of combinatorial optimization 26 (1), 19-43, 2013 | 14 | 2013 |
Paola BonizzoniUniversity of Milano Bicocca Department of Informatics, Systems and CommunicationVerified email at unimib.it
