| The complexity of multiple sequence alignment with SP-score that is a metric P Bonizzoni, G Della Vedova Theoretical Computer Science 259 (1-2), 63-79, 2001 | 190 | 2001 |
| The haplotyping problem: an overview of computational models and solutions P Bonizzoni, G Della Vedova, R Dondi, J Li Journal of Computer Science and Technology 18 (6), 675-688, 2003 | 162 | 2003 |
| Reconciling a gene tree to a species tree under the duplication cost model P Bonizzoni, G Della Vedova, R Dondi Theoretical computer science 347 (1-2), 36-53, 2005 | 101 | 2005 |
| Computational graph pangenomics: a tutorial on data structures and their applications JA Baaijens, P Bonizzoni, C Boucher, G Della Vedova, Y Pirola, R Rizzi, ... Natural computing 21 (1), 81-108, 2022 | 74 | 2022 |
| Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ... Quantitative Biology 7 (4), 278-292, 2019 | 67 | 2019 |
| ASPicDB: a database resource for alternative splicing analysis T Castrignanò, M D’Antonio, A Anselmo, D Carrabino, A D’Onorio De Meo, ... Bioinformatics 24 (10), 1300-1304, 2008 | 60 | 2008 |
| HapCol: accurate and memory-efficient haplotype assembly from long reads Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni Bioinformatics 32 (11), 1610-1617, 2016 | 59 | 2016 |
| Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses S Ciccolella, C Ricketts, M Soto Gomez, M Patterson, D Silverbush, ... Bioinformatics 37 (3), 326-333, 2021 | 58 | 2021 |
| ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events L Denti, R Rizzi, S Beretta, GD Vedova, M Previtali, P Bonizzoni BMC bioinformatics 19 (1), 444, 2018 | 57 | 2018 |
| ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences P Bonizzoni, R Rizzi, G Pesole BMC bioinformatics 6 (1), 244, 2005 | 53 | 2005 |
| Experimenting an approximation algorithm for the LCS P Bonizzoni, G Della Vedova, G Mauri Discrete Applied Mathematics 110 (1), 13-24, 2001 | 53 | 2001 |
| ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ... Nucleic acids research 39 (suppl_1), D80-D85, 2010 | 50 | 2010 |
| On the approximation of correlation clustering and consensus clustering P Bonizzoni, G Della Vedova, R Dondi, T Jiang Journal of Computer and System Sciences 74 (5), 671-696, 2008 | 44 | 2008 |
| Exemplar longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007 | 44 | 2007 |
| ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization T Castrignano, R Rizzi, IG Talamo, PDO De Meo, A Anselmo, P Bonizzoni, ... Nucleic Acids Research 34 (suppl_2), W440-W443, 2006 | 44 | 2006 |
| On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria Journal of Computational Biology 23 (9), 718-736, 2016 | 43 | 2016 |
| Separating some splicing models P Bonizzoni, C Ferretti, G Mauri, R Zizza Information Processing Letters 79 (6), 255-259, 2001 | 42 | 2001 |
| An approximation algorithm for the shortest common supersequence problem: an experimental analysis P Barone, P Bonizzoni, GD Vedova, G Mauri Proceedings of the 2001 ACM symposium on applied computing, 56-60, 2001 | 42 | 2001 |
| Variants of constrained longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, Y Pirola Information Processing Letters 110 (20), 877-881, 2010 | 40 | 2010 |
| MALVA: genotyping by Mapping-free ALlele detection of known VAriants L Denti, M Previtali, G Bernardini, A Schönhuth, P Bonizzoni Iscience 18, 20-27, 2019 | 38 | 2019 |
Gianluca Della VedovaUniversità degli Studi di Milano-BicoccaVerified email at dellavedova.org
