| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 27068 | 2012 |
| Using SPAdes de novo assembler A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov Current protocols in bioinformatics 70 (1), e102, 2020 | 3113 | 2020 |
| Versatile genome assembly evaluation with QUAST-LG A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich Bioinformatics 34 (13), i142-i150, 2018 | 1463 | 2018 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1294 | 2013 |
| Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Annual International Conference on Research in Computational Molecular …, 2013 | 926* | 2013 |
| rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data E Bushmanova, D Antipov, A Lapidus, AD Prjibelski GigaScience 8 (9), giz100, 2019 | 854* | 2019 |
| A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ... Nature communications 12 (1), 463, 2021 | 225 | 2021 |
| Accurate isoform discovery with IsoQuant using long reads AD Prjibelski, A Mikheenko, A Joglekar, A Smetanin, J Jarroux, ... Nature Biotechnology 41 (7), 915-918, 2023 | 215 | 2023 |
| Systematic assessment of long-read RNA-seq methods for transcript identification and quantification FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ... Nature methods 21 (7), 1349-1363, 2024 | 211 | 2024 |
| Icarus: visualizer for de novo assembly evaluation A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich Bioinformatics 32 (21), 3321-3323, 2016 | 169 | 2016 |
| rnaQUAST: a quality assessment tool for de novo transcriptome assemblies E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski Bioinformatics 32 (14), 2210-2212, 2016 | 165 | 2016 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 155 | 2014 |
| Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ... Nature biotechnology 40 (7), 1082-1092, 2022 | 133 | 2022 |
| Assembling short reads from jumping libraries with large insert sizes I Vasilinetc, AD Prjibelski, A Gurevich, A Korobeynikov, PA Pevzner Bioinformatics 31 (20), 3262-3268, 2015 | 86 | 2015 |
| De novo peptide sequencing reveals many cyclopeptides in the human gut and other environments B Behsaz, H Mohimani, A Gurevich, A Prjibelski, M Fisher, F Vargas, ... Cell Systems 10 (1), 99-108. e5, 2020 | 56 | 2020 |
| Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish KA Demin, AM Lakstygal, NA Krotova, A Masharsky, N Tagawa, ... Scientific reports 10 (1), 19981, 2020 | 51 | 2020 |
| Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns A Mikheenko, AD Prjibelski, A Joglekar, HU Tilgner Genome research 32 (4), 726-737, 2022 | 40 | 2022 |
| Extending rnaSPAdes functionality for hybrid transcriptome assembly AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ... BMC Bioinformatics 21 (302), 2020 | 40 | 2020 |
| Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.) GD Puglia, AD Prjibelski, D Vitale, E Bushmanova, KJ Schmid, ... BMC genomics 21 (1), 1-17, 2020 | 35 | 2020 |
| Pattern of TAAR5 expression in the human brain based on transcriptome datasets analysis AN Vaganova, RZ Murtazina, TS Shemyakova, AD Prjibelski, ... International Journal of Molecular Sciences 22 (16), 8802, 2021 | 22 | 2021 |
Dmitry AntipovVisiting fellow, National Institutes of HealthVerified email at nih.gov
