| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 26987 | 2012 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 2205* | 2013 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 155 | 2014 |
| Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly S Kim, YS Cho, HM Kim, O Chung, H Kim, S Jho, H Seomun, J Kim, ... Genome biology 17 (1), 211, 2016 | 145 | 2016 |
| Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads A Bankevich, AV Bzikadze, M Kolmogorov, D Antipov, PA Pevzner Nature biotechnology 40 (7), 1075-1081, 2022 | 128 | 2022 |
| Complete sequencing of ape genomes DA Yoo, A Rhie, P Hebbar, F Antonacci, GA Logsdon, SJ Solar, D Antipov, ... Nature, 1-18, 2025 | 119 | 2025 |
| dipSPAdes: assembler for highly polymorphic diploid genomes Y Safonova, A Bankevich, PA Pevzner Journal of Computational Biology 22 (6), 528-545, 2015 | 108 | 2015 |
| Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome biology 20 (1), 226, 2019 | 83 | 2019 |
| TruSPAdes: barcode assembly of TruSeq synthetic long reads A Bankevich, PA Pevzner Nature methods 13 (3), 248-250, 2016 | 58 | 2016 |
| cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs I Tolstoganov, A Bankevich, Z Chen, PA Pevzner Bioinformatics 35 (14), i61-i70, 2019 | 37 | 2019 |
| Joint analysis of long and short reads enables accurate estimates of microbiome complexity A Bankevich, PA Pevzner Cell systems 7 (2), 192-200. e3, 2018 | 14* | 2018 |
| Bounds of the number of leaves of spanning trees AV Bankevich, DV Karpov Journal of Mathematical Sciences 184 (5), 564-572, 2012 | 12 | 2012 |
| CloseRead: a tool for assessing assembly errors in immunoglobulin loci applied to vertebrate long-read genome assemblies Y Zhu, C Watson, Y Safonova, M Pennell, A Bankevich Genome biology 26 (1), 131, 2025 | 11* | 2025 |
| mosaicFlye: Resolving long mosaic repeats using long error-prone reads A Bankevich, P Pevzner biorxiv, 2020.01. 15.908285, 2020 | 9* | 2020 |
| Comparative analysis of mammalian adaptive immune loci revealed spectacular divergence and common genetic patterns M Pospelova, K Voss, A Zamyatin, CT Watson, KP Koepfli, A Bankevich, ... Molecular Biology and Evolution, msaf152, 2025 | 8 | 2025 |
| ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs T Dvorkina, A Bankevich, A Sorokin, F Yang, B Adu-Oppong, R Williams, ... Microbiome 9 (1), 149, 2021 | 7 | 2021 |
| Bounds of the number of leaves of spanning trees in graphs without triangles AV Bankevich Journal of Mathematical Sciences 184 (5), 557-563, 2012 | 5 | 2012 |
| GnnDebugger: GNN based error correction in De Bruijn Graphs M Šimunović, M Šikić, A Bankevich bioRxiv, 2025.05. 07.652713, 2025 | 1 | 2025 |
| Detection and Comparative Analysis of Immunoglobulin Genes in Vertebrate Genomes Y Safonova, A Bankevich, M Pennell, C Watson Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024 | | 2024 |
Pavel PevznerUniversity of California at San DiegoVerified email at ucsd.edu
