| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 27069 | 2012 |
| QUAST: quality assessment tool for genome assemblies A Gurevich, V Saveliev, N Vyahhi, G Tesler Bioinformatics 29 (8), 1072-1075, 2013 | 11076 | 2013 |
| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 1505 | 2020 |
| Versatile genome assembly evaluation with QUAST-LG A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich Bioinformatics 34 (13), i142-i150, 2018 | 1460 | 2018 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1295 | 2013 |
| metaFlye: scalable long-read metagenome assembly using repeat graphs M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ... Nature methods 17 (11), 1103-1110, 2020 | 985 | 2020 |
| Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Annual international conference on research in computational molecular …, 2013 | 919* | 2013 |
| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 888 | 2017 |
| MetaQUAST: evaluation of metagenome assemblies A Mikheenko, V Saveliev, A Gurevich Bioinformatics 32 (7), 1088-1090, 2016 | 777 | 2016 |
| Dereplication of microbial metabolites through database search of mass spectra H Mohimani, A Gurevich, A Shlemov, A Mikheenko, A Korobeynikov, ... Nature communications 9 (1), 4035, 2018 | 381 | 2018 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 366 | 2022 |
| Dereplication of peptidic natural products through database search of mass spectra H Mohimani, A Gurevich, A Mikheenko, N Garg, LF Nothias, A Ninomiya, ... Nature chemical biology 13 (1), 30-37, 2017 | 275 | 2017 |
| Icarus: visualizer for de novo assembly evaluation A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich Bioinformatics 32 (21), 3321-3323, 2016 | 169 | 2016 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 155 | 2014 |
| MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration MM Zdouc, K Blin, NLL Louwen, J Navarro, C Loureiro, CD Bader, ... Nucleic acids research 53 (D1), D678-D690, 2025 | 144 | 2025 |
| MolDiscovery: learning mass spectrometry fragmentation of small molecules L Cao, M Guler, A Tagirdzhanov, YY Lee, A Gurevich, H Mohimani Nature communications 12 (1), 3718, 2021 | 123 | 2021 |
| Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra A Gurevich, A Mikheenko, A Shlemov, A Korobeynikov, H Mohimani, ... Nature microbiology 3 (3), 319-327, 2018 | 107 | 2018 |
| MetaMiner: a scalable peptidogenomics approach for discovery of ribosomal peptide natural products with blind modifications from microbial communities L Cao, A Gurevich, KL Alexander, CB Naman, T Leão, E Glukhov, ... Cell systems 9 (6), 600-608. e4, 2019 | 91 | 2019 |
| Assembling short reads from jumping libraries with large insert sizes I Vasilinetc, AD Prjibelski, A Gurevich, A Korobeynikov, PA Pevzner Bioinformatics 31 (20), 3262-3268, 2015 | 86 | 2015 |
| Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery B Behsaz, E Bode, A Gurevich, YN Shi, F Grundmann, D Acharya, ... Nature communications 12 (1), 3225, 2021 | 79 | 2021 |
Pavel PevznerUniversity of California at San DiegoVerified email at ucsd.edu
