| metaFlye: scalable long-read metagenome assembly using repeat graphs M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ... Nature methods 17 (11), 1103-1110, 2020 | 986 | 2020 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 895 | 2018 |
| LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads RL Warren, C Yang, BP Vandervalk, B Behsaz, A Lagman, SJM Jones, ... GigaScience 4 (1), s13742-015-0076-3, 2015 | 259 | 2015 |
| Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery B Behsaz, E Bode, A Gurevich, YN Shi, F Grundmann, D Acharya, ... Nature communications 12 (1), 3225, 2021 | 79 | 2021 |
| De novo peptide sequencing reveals many cyclopeptides in the human gut and other environments B Behsaz, H Mohimani, A Gurevich, A Prjibelski, M Fisher, F Vargas, ... Cell Systems 10 (1), 99-108. e5, 2020 | 56 | 2020 |
| De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes I Birol, B Behsaz, SA Hammond, E Kucuk, N Veldhoen, CC Helbing PloS one 10 (6), e0130720, 2015 | 47 | 2015 |
| American Gut: an open platform for citizen science microbiome research. mSystems. 2018; 3 (3): e00031–18 D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... DOI 10, 00031-18, 2018 | 36 | 2018 |
| Knight R. 2018 D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... American Gut: an open platform for citizen science microbiome research …, 2018 | 36 | 2018 |
| A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch MF Fisher, J Zhang, NL Taylor, MJ Howard, O Berkowitz, AW Debowski, ... Plant Direct 2 (2), e00042, 2018 | 35 | 2018 |
| HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search YY Lee, M Guler, DN Chigumba, S Wang, N Mittal, C Miller, ... Nature Communications 14 (1), 4219, 2023 | 31 | 2023 |
| American gut: an open platform for citizen science microbiome research. mSystems 3 (3) D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... DOI: https://doi. org/10.1128/mSystems, 00031-18, 2018 | 28 | 2018 |
| De novo assembly of the ringed seal (Pusa hispida) blubber transcriptome: A tool that enables identification of molecular health indicators associated with PCB exposure TM Brown, SA Hammond, B Behsaz, N Veldhoen, I Birol, CC Helbing Aquatic Toxicology 185, 48-57, 2017 | 24 | 2017 |
| Fast mass spectrometry search and clustering of untargeted metabolomics data M Mongia, TM Yasaka, Y Liu, M Guler, L Lu, A Bhagwat, B Behsaz, ... Nature biotechnology 42 (11), 1672-1677, 2024 | 22 | 2024 |
| Turing universality of step-wise and stage assembly at temperature 1 B Behsaz, J Maňuch, L Stacho International Workshop on DNA-Based Computers, 1-11, 2012 | 19 | 2012 |
| AdenPredictor: accurate prediction of the adenylation domain specificity of nonribosomal peptide biosynthetic gene clusters in microbial genomes M Mongia, R Baral, A Adduri, D Yan, Y Liu, Y Bian, P Kim, B Behsaz, ... Bioinformatics 39 (Supplement_1), i40-i46, 2023 | 18 | 2023 |
| Knight R. 2018. American Gut: an open platform for citizen science microbiome research. mSystems 3: e00031-18 D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... | 14 | 2018 |
| Discovering type I cis-AT polyketides through computational mass spectrometry and genome mining with Seq2PKS D Yan, M Zhou, A Adduri, Y Zhuang, M Guler, S Liu, H Shin, T Kovach, ... Nature Communications 15 (1), 5356, 2024 | 12 | 2024 |
| Chen Yet al D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... American gut: an open platform for citizen science microbiome research …, 2018 | 5 | 2018 |
| System for Identifying Structures of Molecular Compounds from Mass Spectrometry Data B Behsaz, L Cao, M Guler, YY Lee, H MOHIMANI US Patent App. 17/554,690, 2022 | 3 | 2022 |
| Interpretable adenylation domain specificity prediction using protein language models AK Adduri, AT McNutt, CN Ellington, K Suraparaju, N Fang, D Yan, ... bioRxiv, 2025 | 1 | 2025 |
