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Alla Lapidus
Alla Lapidus
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Cited by
Year
The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
F Kunst, N Ogasawara, I Moszer, AM Albertini, G Alloni, V Azevedo, ...
Nature 390 (6657), 249-256, 1997
49581997
Using SPAdes de novo assembler
A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov
Current protocols in bioinformatics 70 (1), e102, 2020
31162020
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
23502017
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
12942013
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ...
Nature 462 (7276), 1056-1060, 2009
11382009
The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome
DA Sela, J Chapman, A Adeuya, JH Kim, F Chen, TR Whitehead, ...
Proceedings of the National Academy of Sciences 105 (48), 18964-18969, 2008
10992008
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
N Ivanova, A Sorokin, I Anderson, N Galleron, B Candelon, V Kapatral, ...
Nature 423 (6935), 87-91, 2003
10182003
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Annual international conference on research in computational molecular …, 2013
9012013
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
E Bushmanova, D Antipov, A Lapidus, AD Prjibelski
GigaScience 8 (9), giz100, 2019
8352019
The genomic basis of trophic strategy in marine bacteria
FM Lauro, D McDougald, T Thomas, TJ Williams, S Egan, S Rice, ...
Proceedings of the National Academy of Sciences 106 (37), 15527-15533, 2009
8332009
The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode
J Foster, M Ganatra, I Kamal, J Ware, K Makarova, N Ivanova, ...
PLoS biology 3 (4), e121, 2005
7812005
MGnify: the microbiome analysis resource in 2020
AL Mitchell, A Almeida, M Beracochea, M Boland, J Burgin, G Cochrane, ...
Nucleic acids research 48 (D1), D570-D578, 2020
7322020
Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica
DW Udwary, L Zeigler, RN Asolkar, V Singan, A Lapidus, W Fenical, ...
Proceedings of the National Academy of Sciences 104 (25), 10376-10381, 2007
6982007
The plant cell wall–decomposing machinery underlies the functional diversity of forest fungi
DC Eastwood, D Floudas, M Binder, A Majcherczyk, P Schneider, A Aerts, ...
Science 333 (6043), 762-765, 2011
6832011
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus
A Bolotin, B Quinquis, P Renault, A Sorokin, SD Ehrlich, S Kulakauskas, ...
Nature biotechnology 22 (12), 1554-1558, 2004
6692004
A bioinformatician's guide to metagenomics
V Kunin, A Copeland, A Lapidus, K Mavromatis, P Hugenholtz
Microbiology and molecular biology reviews 72 (4), 557-578, 2008
6422008
Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus
GC Kettler, AC Martiny, K Huang, J Zucker, ML Coleman, S Rodrigue, ...
PLoS genetics 3 (12), e231, 2007
6192007
plasmidSPAdes: assembling plasmids from whole genome sequencing data
D Antipov, N Hartwick, M Shen, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 32 (22), 3380-3387, 2016
6132016
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts
X Bai, J Zhang, A Ewing, SA Miller, A Jancso Radek, DV Shevchenko, ...
Journal of bacteriology 188 (10), 3682-3696, 2006
6022006
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
5792008
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