| New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ... Acta Biochimica Polonica 63 (4), 737-744, 2016 | 239 | 2016 |
| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 219 | 2017 |
| RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015 | 217 | 2015 |
| RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... Rna 26 (8), 982-995, 2020 | 161 | 2020 |
| RNApdbee 2.0: multifunctional tool for RNA structure annotation T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ... Nucleic acids research 46 (W1), W30-W35, 2018 | 143 | 2018 |
| The European Integrated Tokamak Modelling (ITM) effort: achievements and first physics results GL Falchetto, D Coster, R Coelho, BD Scott, L Figini, D Kalupin, E Nardon, ... Nuclear Fusion 54 (4), 043018, 2014 | 116 | 2014 |
| When will RNA get its AlphaFold moment? B Schneider, BA Sweeney, A Bateman, J Cerny, T Zok, M Szachniuk Nucleic Acids Research 51 (18), 9522-9532, 2023 | 109 | 2023 |
| RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ... Nucleic acids research 48 (2), 576-588, 2020 | 98 | 2020 |
| RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ... Nucleic acids research 42 (W1), W368-W372, 2014 | 91 | 2014 |
| INDIGO-DataCloud: A data and computing platform to facilitate seamless access to e-infrastructures D Salomoni, I Campos, L Gaido, JM de Lucas, P Solagna, J Gomes, ... arXiv preprint arXiv:1711.01981, 2017 | 77 | 2017 |
| New prediction categories in CASP15 A Kryshtafovych, M Antczak, M Szachniuk, T Zok, RC Kretsch, R Rangan, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1550-1557, 2023 | 59 | 2023 |
| New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk Bioinformatics 34 (8), 1304-1312, 2018 | 58 | 2018 |
| MCQ4Structures to compute similarity of molecule structures T Zok, M Popenda, M Szachniuk Central European Journal of Operations Research 22 (3), 457-473, 2014 | 50 | 2014 |
| RNA-Puzzles Round V: blind predictions of 23 RNA structures F Bu, Y Adam, RW Adamiak, M Antczak, BRH de Aquino, NG Badepally, ... Nature methods 22 (2), 399-411, 2025 | 42 | 2025 |
| New in silico approach to assessing RNA secondary structures with non-canonical base pairs A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ... BMC bioinformatics 16 (1), 276, 2015 | 40 | 2015 |
| ONQUADRO: a database of experimentally determined quadruplex structures T Zok, N Kraszewska, J Miskiewicz, P Pielacinska, M Zurkowski, ... Nucleic Acids Research 50 (D1), D253-D258, 2022 | 39 | 2022 |
| Topology-based classification of tetrads and quadruplex structures M Popenda, J Miskiewicz, J Sarzynska, T Zok, M Szachniuk Bioinformatics 36 (4), 1129-1134, 2020 | 35 | 2020 |
| Entanglements of structure elements revealed in RNA 3D models M Popenda, T Zok, J Sarzynska, A Korpeta, RW Adamiak, M Antczak, ... Nucleic acids research 49 (17), 9625-9632, 2021 | 25 | 2021 |
| LCS-TA to identify similar fragments in RNA 3D structures J Wiedemann, T Zok, M Milostan, M Szachniuk BMC bioinformatics 18 (1), 456, 2017 | 24 | 2017 |
| Computational pipeline for reference-free comparative analysis of RNA 3D structures applied to SARS-CoV-2 UTR models J Gumna, M Antczak, RW Adamiak, JM Bujnicki, SJ Chen, F Ding, ... International Journal of Molecular Sciences 23 (17), 9630, 2022 | 23 | 2022 |
Marta SzachniukProfessor; Institute of Bioorganic Chemistry PAS and Poznan University of TechnologyVerified email at cs.put.poznan.pl
