| RNApdbee 2.0: multifunctional tool for RNA structure annotation T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ... Nucleic acids research 46 (W1), W30-W35, 2018 | 143 | 2018 |
| New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk Bioinformatics 34 (8), 1304-1312, 2018 | 58 | 2018 |
| ONQUADRO: a database of experimentally determined quadruplex structures T Zok, N Kraszewska, J Miskiewicz, P Pielacinska, M Zurkowski, ... Nucleic Acids Research 50 (D1), D253-D258, 2022 | 39 | 2022 |
| WebTetrado: a webserver to explore quadruplexes in nucleic acid 3D structures B Adamczyk, M Zurkowski, M Szachniuk, T Zok Nucleic Acids Research 51 (W1), W607-W612, 2023 | 11 | 2023 |
| DrawTetrado to create layer diagrams of G4 structures M Zurkowski, T Zok, M Szachniuk Bioinformatics 38 (15), 3835-3836, 2022 | 5 | 2022 |
| RNAhugs web server for customized 3D RNA structure alignment M Zurkowski, M Swiercz, F Wozny, M Antczak, M Szachniuk Nucleic Acids Research 52 (W1), W348-W353, 2024 | 3 | 2024 |
| High-quality, customizable heuristics for RNA 3D structure alignment M Zurkowski, M Antczak, M Szachniuk Bioinformatics 39 (5), btad315, 2023 | 3 | 2023 |
| Detecting polynucleotide motifs: Pentads, hexads, and beyond M Zurkowski, M Marusic, D Gudanis-Sobocinska, M Szachniuk PLOS Computational Biology 21 (10), e1013633, 2025 | | 2025 |
