| NPDock: a web server for protein-nucleic acid docking I Tuszynska, M Magnus, K Jonak, W Dawson, JM Bujnicki Nucleic Acids Res., 2015 | 276 | 2015 |
| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 219 | 2017 |
| RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015 | 216 | 2015 |
| SimRNAweb: a web server for RNA 3D structure modeling with optional restraints M Magnus, MJ Boniecki, W Dawson, JM Bujnicki Nucleic acids research 44 (W1), W315-W319, 2016 | 164 | 2016 |
| RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... Rna 26 (8), 982-995, 2020 | 161 | 2020 |
| RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ... Nucleic acids research 48 (2), 576-588, 2020 | 98 | 2020 |
| Structural bioinformatics of the human spliceosomal proteome I Korneta, M Magnus, JM Bujnicki Nucleic acids research 40 (15), 7046-7065, 2012 | 58 | 2012 |
| Computational modeling of RNA 3D structures, with the aid of experimental restraints M Magnus, D Matelska, G Łach, G Chojnowski, MJ Boniecki, E Purta, ... RNA biology 11 (5), 522-536, 2014 | 49 | 2014 |
| RNA3DB: A structurally-dissimilar dataset split for training and benchmarking deep learning models for RNA structure prediction M Szikszai, M Magnus, S Sanghi, S Kadyan, N Bouatta, E Rivas Journal of Molecular Biology, 168552, 2024 | 43 | 2024 |
| RNA-Puzzles Round V: blind predictions of 23 RNA structures F Bu, Y Adam, RW Adamiak, M Antczak, BRH de Aquino, NG Badepally, ... Nature methods 22 (2), 399-411, 2025 | 41 | 2025 |
| MetaLocGramN: A meta-predictor of protein subcellular localization for Gram-negative bacteria M Magnus, M Pawlowski, JM Bujnicki Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1824 (12), 1425-1433, 2012 | 41 | 2012 |
| RNA 3D structure prediction guided by independent folding of homologous sequences M Magnus, K Kappel, R Das, JM Bujnicki BMC bioinformatics 20 (1), 512, 2019 | 37 | 2019 |
| RNArchitecture: a database and a classification system of RNA families, with a focus on structural information P Boccaletto, M Magnus, C Almeida, A Żyła, A Astha, R Pluta, B Bagiński, ... Nucleic acids research 46 (D1), D202-D205, 2017 | 36 | 2017 |
| Computational modeling of protein–RNA complex structures I Tuszynska, D Matelska, M Magnus, G Chojnowski, JM Kasprzak, ... Methods 65 (3), 310-319, 2014 | 34 | 2014 |
| Structures of microRNA precursors P Kozlowski, J Starega-Roslan, M Legacz, M Magnus, WJ Krzyzosiak Current perspectives in microRNAs (miRNA), 1-16, 2008 | 31* | 2008 |
| SimRNAweb v2: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories SN Moafinejad, BRH de Aquino, MJ Boniecki, IPNP Jeyeram, G Nikolaev, ... Nucleic Acids Research, gkae356, 2024 | 19 | 2024 |
| RNA 3D structure modeling by fragment assembly with small-angle X-ray scattering restraints G Chojnowski, R Zaborowski, M Magnus, S Mukherjee, JM Bujnicki Bioinformatics 39 (9), btad527, 2023 | 18* | 2023 |
| Rearrangements within the U6 snRNA core during the transition between the two catalytic steps of splicing K Eysmont, K Matylla-Kulińska, A Jaskulska, M Magnus, MM Konarska Molecular Cell 75 (3), 538-548. e3, 2019 | 17 | 2019 |
| RNA 3D structure modeling by combination of template-based method ModeRNA, template-free folding with SimRNA, and refinement with QRNAS P Piatkowski, JM Kasprzak, D Kumar, M Magnus, G Chojnowski, ... RNA Structure Determination: Methods and Protocols, 217-235, 2016 | 15 | 2016 |
| rna-tools.online: a Swiss army knife for RNA 3D structure modeling workflow M Magnus Nucleic Acids Research, 2022 | 9 | 2022 |
Janusz BujnickiProfessor of Biology, International Institute of Molecular and Cell Biology in WarsawVerified email at iimcb.gov.pl
