| SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction MJ Boniecki, G Lach, WK Dawson, K Tomala, P Lukasz, T Soltysinski, ... Nucleic acids research 44 (7), e63-e63, 2016 | 489 | 2016 |
| RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ... Rna 18 (4), 610-625, 2012 | 340 | 2012 |
| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 219 | 2017 |
| RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015 | 216 | 2015 |
| SimRNAweb: a web server for RNA 3D structure modeling with optional restraints M Magnus, MJ Boniecki, W Dawson, JM Bujnicki Nucleic acids research 44 (W1), W315-W319, 2016 | 164 | 2016 |
| RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... Rna 26 (8), 982-995, 2020 | 161 | 2020 |
| Protein fragment reconstruction using various modeling techniques M Boniecki, P Rotkiewicz, J Skolnick, A Kolinski Journal of computer-aided molecular design 17 (11), 725-738, 2003 | 104 | 2003 |
| RNA and protein 3D structure modeling: similarities and differences K Rother, M Rother, M Boniecki, T Puton, JM Bujnicki Journal of molecular modeling 17 (9), 2325-2336, 2011 | 103 | 2011 |
| TOUCHSTONE: a unified approach to protein structure prediction J Skolnick, Y Zhang, AK Arakaki, A Kolinski, M Boniecki, A Szilágyi, ... Proteins: Structure, Function, and Bioinformatics 53 (S6), 469-479, 2003 | 91 | 2003 |
| Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement J Skolnick, A Kolinski, D Kihara, M Betancourt, P Rotkiewicz, M Boniecki Proteins: Structure, Function, and Bioinformatics 45 (S5), 149-156, 2001 | 88 | 2001 |
| FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6 J Kosinski, MJ Gajda, IA Cymerman, MA Kurowski, M Pawlowski, ... PROTEINS: Structure, Function, and Bioinformatics 61 (S7), 106-113, 2005 | 83 | 2005 |
| Theoretical model of prion propagation: a misfolded protein induces misfolding E Małolepsza, M Boniecki, A Kolinski, L Piela Proceedings of the National Academy of Sciences 102 (22), 7835-7840, 2005 | 66 | 2005 |
| Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms2io6A37 in tRNA KH Kaminska, U Baraniak, M Boniecki, K Nowaczyk, A Czerwoniec, ... Proteins: Structure, Function, and Bioinformatics 70 (1), 1-18, 2008 | 58 | 2008 |
| Computational modeling of RNA 3D structures, with the aid of experimental restraints M Magnus, D Matelska, G Łach, G Chojnowski, MJ Boniecki, E Purta, ... RNA biology 11 (5), 522-536, 2014 | 49 | 2014 |
| MetalionRNA: computational predictor of metal-binding sites in RNA structures A Philips, K Milanowska, G Lach, M Boniecki, K Rother, JM Bujnicki Bioinformatics 28 (2), 198-205, 2012 | 49 | 2012 |
| I-Ssp6803I: the first homing endonuclease from the PD-(D/E) XK superfamily exhibits an unusual mode of DNA recognition J Orlowski, M Boniecki, JM Bujnicki Bioinformatics 23 (5), 527-530, 2007 | 45 | 2007 |
| RNA-Puzzles Round V: blind predictions of 23 RNA structures F Bu, Y Adam, RW Adamiak, M Antczak, BRH de Aquino, NG Badepally, ... Nature methods 22 (2), 399-411, 2025 | 41 | 2025 |
| RNArchitecture: a database and a classification system of RNA families, with a focus on structural information P Boccaletto, M Magnus, C Almeida, A Żyła, A Astha, R Pluta, B Bagiński, ... Nucleic Acids Research 46 (D1), D202-D205, 2018 | 36 | 2018 |
| Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR E Dzananovic, TR Patel, G Chojnowski, MJ Boniecki, S Deo, K McEleney, ... Journal of structural biology 185 (1), 48-57, 2014 | 32 | 2014 |
| RNAProbe: a web server for normalization and analysis of RNA structure probing data TK Wirecki, K Merdas, A Bernat, MJ Boniecki, JM Bujnicki, F Stefaniak Nucleic Acids Research 48 (W1), W292-W299, 2020 | 27 | 2020 |
Janusz BujnickiProfessor of Biology, International Institute of Molecular and Cell Biology in WarsawVerified email at iimcb.gov.pl
