| Normalization and microbial differential abundance strategies depend upon data characteristics S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... Microbiome 5 (1), 1-18, 2017 | 2331 | 2017 |
| 3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets A Birmingham, EM Anderson, A Reynolds, D Ilsley-Tyree, D Leake, ... Nature methods 3 (3), 199-204, 2006 | 1278 | 2006 |
| Adipose Tissue Macrophage-Derived Exosomal miRNAs Can Modulate In Vivo and In Vitro Insulin Sensitivity W Ying, M Riopel, G Bandyopadhyay, Y Dong, A Birmingham, JB Seo, ... Cell 171 (2), 372-384. e12, 2017 | 1263 | 2017 |
| Correlation detection strategies in microbial data sets vary widely in sensitivity and precision S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ... The ISME journal 10 (7), 1669-1681, 2016 | 831 | 2016 |
| Off-target effects by siRNA can induce toxic phenotype Y Fedorov, EM Anderson, A Birmingham, A Reynolds, J Karpilow, ... Rna 12 (7), 1188-1196, 2006 | 727 | 2006 |
| Statistical methods for analysis of high-throughput RNA interference screens A Birmingham, LM Selfors, T Forster, D Wrobel, CJ Kennedy, E Shanks, ... Nature Methods 6 (8), 569-575, 2009 | 721 | 2009 |
| QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current Protocols in Bioinformatics 70 (1), e100, 2020 | 536 | 2020 |
| [Preprint] Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ... medRxiv, 2021 | 503* | 2021 |
| Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions JP Shen, D Zhao, R Sasik, J Luebeck, A Birmingham, ... Nature methods 14 (6), 573-576, 2017 | 436 | 2017 |
| A protocol for designing siRNAs with high functionality and specificity A Birmingham, E Anderson, K Sullivan, A Reynolds, Q Boese, D Leake, ... Nature protocols 2 (9), 2068-2078, 2007 | 310 | 2007 |
| PyCogent: a toolkit for making sense from sequence R Knight, P Maxwell, A Birmingham, J Carnes, JG Caporaso, BC Easton, ... Genome biology 8 (8), 1-16, 2007 | 254 | 2007 |
| Advances in CRISPR-Cas9 genome engineering: lessons learned from RNA interference R Barrangou, A Birmingham, S Wiemann, RL Beijersbergen, V Hornung, ... Nucleic acids research 43 (7), 3407-3419, 2015 | 229 | 2015 |
| Systematic analysis of CRISPR–Cas9 mismatch tolerance reveals low levels of off-target activity EM Anderson, A Haupt, JA Schiel, E Chou, HB Machado, Ž Strezoska, ... Journal of biotechnology 211, 56-65, 2015 | 224 | 2015 |
| Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks A Rule, A Birmingham, C Zuniga, I Altintas, SC Huang, R Knight, ... PLoS computational biology 15 (7), 2019 | 215* | 2019 |
| Resurgence of SARS-CoV-2 infection in a highly vaccinated health system workforce J Keehner, LE Horton, NJ Binkin, LC Laurent, ... New England Journal of Medicine 385 (14), 1330-1332, 2021 | 209 | 2021 |
| Experimental validation of the importance of seed complement frequency to siRNA specificity EM Anderson, A Birmingham, S Baskerville, A Reynolds, E Maksimova, ... Rna 14 (5), 853-861, 2008 | 196 | 2008 |
| Circumstellar disk candidates identified in NGC 2264 LM Rebull, RB Makidon, SE Strom, LA Hillenbrand, A Birmingham, ... The Astronomical Journal 123 (3), 1528, 2002 | 145 | 2002 |
| Combinatorial CRISPR-Cas9 Metabolic Screens Reveal Critical Redox Control Points Dependent on the KEAP1-NRF2 Regulatory Axis D Zhao, MG Badur, J Luebeck, JH Magaña, A Birmingham, R Sasik, ... Molecular cell 69 (4), 699-708. e7, 2018 | 115 | 2018 |
| Context and the human microbiome D McDonald, A Birmingham, R Knight Microbiome 3 (1), 1-8, 2015 | 102 | 2015 |
| Interleukin‐18 signaling promotes activation of hepatic stellate cells in mouse liver fibrosis J Knorr, B Kaufmann, ME Inzaugarat, TM Holtmann, L Geisler, ... Hepatology 77 (6), 1968-1982, 2023 | 79 | 2023 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
