| Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005 | 1648 | 2005 |
| Evaluation of clustering algorithms for protein-protein interaction networks S Brohee, J van Helden BMC bioinformatics 7 (1), 488, 2006 | 1139 | 2006 |
| Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies J van Helden, B André, J Collado-Vides Journal of molecular biology 281 (5), 827-842, 1998 | 1032 | 1998 |
| Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ... Nature 450 (7167), 219, 2007 | 735 | 2007 |
| Regulatory sequence analysis tools J Van Helden Nucleic acids research 31 (13), 3593-3596, 2003 | 544 | 2003 |
| Discovering regulatory elements in non-coding sequences by analysis of spaced dyads J Helden, A Rios, J Collado-Vides Nucleic acids research 28 (8), 1808-1818, 2000 | 455 | 2000 |
| In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication F Touret, M Gilles, K Barral, A Nougairède, J van Helden, E Decroly, ... Scientific reports 10 (1), 1-8, 2020 | 451 | 2020 |
| CYGD: the comprehensive yeast genome database U Güldener, M Münsterkötter, G Kastenmüller, N Strack, J van Helden, ... Nucleic acids research 33 (suppl_1), D364-D368, 2005 | 415 | 2005 |
| RSAT: regulatory sequence analysis tools M Thomas-Chollier, O Sand, JV Turatsinze, R Janky, M Defrance, ... Nucleic acids research 36 (suppl_2), W119-W127, 2008 | 347 | 2008 |
| Effect of 21 different nitrogen sources on global gene expression in the yeast Saccharomyces cerevisiae P Godard, A Urrestarazu, S Vissers, K Kontos, G Bontempi, J van Helden, ... Molecular and cellular biology 27 (8), 3065-3086, 2007 | 334 | 2007 |
| Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules JV Turatsinze, M Thomas-Chollier, M Defrance, J van Helden Nature protocols 3 (10), 1578-1588, 2008 | 331 | 2008 |
| Genome-wide characterization of mammalian promoters with distal enhancer functions. LTM Dao, AO Galindo-Albarrán, JA Castro-Mondragon, C Andrieu-Soler, ... Nature genetics 49 (7), 1073, 2017 | 322 | 2017 |
| RSAT 2011: regulatory sequence analysis tools M Thomas-Chollier, M Defrance, A Medina-Rivera, O Sand, C Herrmann, ... Nucleic acids research 39 (suppl_2), W86-W91, 2011 | 303 | 2011 |
| RSAT 2015: Regulatory Sequence Analysis Tools A Medina-Rivera, M Defrance, O Sand, C Herrmann, ... Nucleic acids research, gkv362, 2015 | 295 | 2015 |
| RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets M Thomas-Chollier, C Herrmann, M Defrance, O Sand, D Thieffry, ... Nucleic acids research 40 (4), e31-e31, 2011 | 290 | 2011 |
| Reticulate representation of evolutionary and functional relationships between phage genomes G Lima-Mendez, J Van Helden, A Toussaint, R Leplae Molecular biology and evolution 25 (4), 762-777, 2008 | 283 | 2008 |
| The powerful law of the power law and other myths in network biology G Lima-Mendez, J van Helden Molecular BioSystems 5 (12), 1482-1493, 2009 | 281 | 2009 |
| Prophinder: a computational tool for prophage prediction in prokaryotic genomes G Lima-Mendez, J Van Helden, A Toussaint, R Leplae Bioinformatics 24 (6), 863-865, 2008 | 259 | 2008 |
| Transcription factor regulation can be accurately predicted from the presence of target gene signatures in microarray gene expression data A Essaghir, F Toffalini, L Knoops, A Kallin, J van Helden, JB Demoulin Nucleic acids research 38 (11), e120-e120, 2010 | 247 | 2010 |
| RSAT 2018: regulatory sequence analysis tools 20th anniversary NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ... Nucleic acids research 46 (W1), W209-W214, 2018 | 234 | 2018 |
THOMAS-CHOLLIER Morganeassociate professor, Ecole Normale Supérieure ParisVerified email at biologie.ens.fr
