| GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis B Contreras-Moreira, P Vinuesa Applied and environmental microbiology 79 (24), 7696-7701, 2013 | 985 | 2013 |
| RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 36 (suppl_1), D120-D124, 2008 | 638 | 2008 |
| Ensembl Genomes 2020—enabling non-vertebrate genomic research KL Howe, B Contreras-Moreira, N De Silva, G Maslen, W Akanni, J Allen, ... Nucleic acids research 48 (D1), D689-D695, 2020 | 503 | 2020 |
| Ensembl Genomes 2022: an expanding genome resource for non-vertebrates AD Yates, J Allen, RM Amode, AG Azov, M Barba, A Becerra, J Bhai, ... Nucleic acids research 50 (D1), D996-D1003, 2022 | 390 | 2022 |
| Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure SP Gordon, B Contreras-Moreira, DP Woods, DL Des Marais, D Burgess, ... Nature communications 8 (1), 2184, 2017 | 380 | 2017 |
| Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli A Mendoza-Vargas, L Olvera, M Olvera, R Grande, L Vega-Alvarado, ... PloS one 4 (10), e7526, 2009 | 320 | 2009 |
| RSAT 2015: regulatory sequence analysis tools A Medina-Rivera, M Defrance, O Sand, C Herrmann, ... Nucleic acids research 43 (W1), W50-W56, 2015 | 295 | 2015 |
| OPCML at 11q25 is epigenetically inactivated and has tumor-suppressor function in epithelial ovarian cancer GC Sellar, KP Watt, GJ Rabiasz, EA Stronach, L Li, EP Miller, CE Massie, ... Nature genetics 34 (3), 337-343, 2003 | 247 | 2003 |
| RSAT 2018: regulatory sequence analysis tools 20th anniversary NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ... Nucleic acids research 46 (W1), W209-W214, 2018 | 234 | 2018 |
| Multilocus Sequence Analysis for Assessment of the Biogeography and Evolutionary Genetics of Four Bradyrhizobium Species That Nodulate Soybeans on the … P Vinuesa, K Rojas-Jiménez, B Contreras-Moreira, SK Mahna, BN Prasad, ... Applied and environmental microbiology 74 (22), 6987-6996, 2008 | 216 | 2008 |
| Domain fishing: a first step in protein comparative modelling B Contreras-Moreira, PA Bates Bioinformatics 18 (8), 1141-1142, 2002 | 214 | 2002 |
| GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision … P Vinuesa, LE Ochoa-Sánchez, B Contreras-Moreira Frontiers in microbiology 9, 771, 2018 | 163 | 2018 |
| Gramene 2021: harnessing the power of comparative genomics and pathways for plant research MK Tello-Ruiz, S Naithani, P Gupta, A Olson, S Wei, J Preece, Y Jiao, ... Nucleic Acids Research 49 (D1), D1452-D1463, 2021 | 124 | 2021 |
| BARLEYMAP: physical and genetic mapping of nucleotide sequences and annotation of surrounding loci in barley CP Cantalapiedra, R Boudiar, AM Casas, E Igartua, B Contreras-Moreira Molecular breeding 35 (1), 13, 2015 | 124 | 2015 |
| A roadmap for gene functional characterisation in crops with large genomes: lessons from polyploid wheat NM Adamski, P Borrill, J Brinton, SA Harrington, C Marchal, AR Bentley, ... Elife 9, e55646, 2020 | 123 | 2020 |
| OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors TS Serra, DD Figueiredo, AM Cordeiro, DM Almeida, T Lourenço, ... Plant Molecular Biology 82 (4), 439-455, 2013 | 109 | 2013 |
| Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors SP Gordon, B Contreras-Moreira, JJ Levy, A Djamei, A Czedik-Eysenberg, ... Nature communications 11 (1), 3670, 2020 | 105 | 2020 |
| Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes R Sancho, CP Cantalapiedra, D López‐Alvarez, SP Gordon, JP Vogel, ... New Phytologist 218 (4), 1631-1644, 2018 | 103 | 2018 |
| Analysis of plant pan-genomes and transcriptomes with GET_HOMOLOGUES-EST, a clustering solution for sequences of the same species B Contreras-Moreira, CP Cantalapiedra, MJ García-Pereira, SP Gordon, ... Frontiers in plant science 8, 184, 2017 | 102 | 2017 |
| footprintDB: a database of transcription factors with annotated cis elements and binding interfaces A Sebastian, B Contreras-Moreira Bioinformatics 30 (2), 258-265, 2014 | 99 | 2014 |
Ana Maria CasasGenetics and Plant Production Department, Estación Experimental de Aula Dei (EEAD-CSIC)Verified email at eead.csic.es
