| Absence of a simple code: how transcription factors read the genome M Slattery, T Zhou, L Yang, ACD Machado, R Gordân, R Rohs Trends in biochemical sciences 39 (9), 381-399, 2014 | 653 | 2014 |
| DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale T Zhou, L Yang, Y Lu, I Dror, AC Dantas Machado, T Ghane, R Di Felice, ... Nucleic acids research 41 (W1), W56-W62, 2013 | 367 | 2013 |
| Quantitative modeling of transcription factor binding specificities using DNA shape T Zhou, N Shen, L Yang, N Abe, J Horton, RS Mann, HJ Bussemaker, ... Proceedings of the National Academy of Sciences 112 (15), 4654-4659, 2015 | 292 | 2015 |
| Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers I Barozzi, M Simonatto, S Bonifacio, L Yang, R Rohs, S Ghisletti, G Natoli Molecular cell 54 (5), 844-857, 2014 | 274 | 2014 |
| Deconvolving the recognition of DNA shape from sequence N Abe, I Dror, L Yang, M Slattery, T Zhou, HJ Bussemaker, R Rohs, ... Cell 161 (2), 307-318, 2015 | 221 | 2015 |
| DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding TP Chiu, F Comoglio, T Zhou, L Yang, R Paro, R Rohs Bioinformatics 32 (8), 1211-1213, 2016 | 186 | 2016 |
| DNA shape features improve transcription factor binding site predictions in vivo A Mathelier, B Xin, TP Chiu, L Yang, R Rohs, WW Wasserman Cell systems 3 (3), 278-286. e4, 2016 | 180 | 2016 |
| TFBSshape: a motif database for DNA shape features of transcription factor binding sites L Yang, T Zhou, I Dror, A Mathelier, WW Wasserman, R Gordân, R Rohs Nucleic acids research 42 (D1), D148-D155, 2014 | 148 | 2014 |
| Transcription factor family‐specific DNA shape readout revealed by quantitative specificity models L Yang, Y Orenstein, A Jolma, Y Yin, J Taipale, R Shamir, R Rohs Molecular systems biology 13 (2), 910, 2017 | 141 | 2017 |
| GBshape: a genome browser database for DNA shape annotations TP Chiu, L Yang, T Zhou, BJ Main, SCJ Parker, SV Nuzhdin, TD Tullius, ... Nucleic acids research 43 (D1), D103-D109, 2015 | 68 | 2015 |
| Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation G Kuzu, EG Kaye, J Chery, T Siggers, L Yang, JR Dobson, S Boor, J Bliss, ... PLoS genetics 12 (7), e1006120, 2016 | 56 | 2016 |
| DNA sequence+ shape kernel enables alignment-free modeling of transcription factor binding W Ma, L Yang, R Rohs, WS Noble Bioinformatics 33 (19), 3003-3010, 2017 | 29 | 2017 |
| Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED T Hadžić, D Park, KC Abruzzi, L Yang, JS Trigg, R Rohs, M Rosbash, ... Nucleic acids research 43 (4), 2199-2215, 2015 | 27 | 2015 |
| Exposing the secrets of sex determination R Rohs, ACD Machado, L Yang NATURE STRUCTURAl & MolECUlAR BIoloGy 22 (6), 437-438, 2015 | 5 | 2015 |
Remo RohsProfessor and Chair of Quantitative and Computational Biology, University of Southern CaliforniaVerified email at usc.edu
