| DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale T Zhou, L Yang, Y Lu, I Dror, AC Dantas Machado, T Ghane, R Di Felice, ... Nucleic acids research 41 (W1), W56-W62, 2013 | 367 | 2013 |
| Probing DNA shape and methylation state on a genomic scale with DNase I A Lazarovici, T Zhou, A Shafer, AC Dantas Machado, TR Riley, ... Proceedings of the National Academy of Sciences 110 (16), 6376-6381, 2013 | 216 | 2013 |
| Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent Y Lu, P Derreumaux, Z Guo, N Mousseau, G Wei Proteins: Structure, Function, and Bioinformatics 75 (4), 954-963, 2009 | 136 | 2009 |
| Structural diversity of the soluble trimers of the human amylin (20–29) peptide revealed by molecular dynamics simulations Y Mo, Y Lu, G Wei, P Derreumaux The Journal of chemical physics 130 (12), 2009 | 57 | 2009 |
| Effects of G33A and G33I mutations on the structures of monomer and dimer of the amyloid-β fragment 29− 42 by replica exchange molecular dynamics simulations Y Lu, G Wei, P Derreumaux The Journal of Physical Chemistry B 115 (5), 1282-1288, 2011 | 43 | 2011 |
| Conformations of p53 Response Elements in Solution Deduced Using Site-Directed Spin Labeling and Monte Carlo Sampling X Zhang, AC Dantas Machado, Y Ding, Y Chen, Y Lu, Y Duan, K Tham, ... | 32 | 2013 |
| Influence of electric field on the amyloid-β (29-42) peptides embedded in a membrane bilayer Y Lu, XF Shi, FR Salsbury, P Derreumaux The Journal of Chemical Physics 148 (4), 2018 | 24 | 2018 |
| Amyloid-β (29–42) dimeric conformations in membranes rich in omega-3 and omega-6 polyunsaturated fatty acids Y Lu, XF Shi, PH Nguyen, F Sterpone, FR Salsbury Jr, P Derreumaux The Journal of Physical Chemistry B 123 (12), 2687-2696, 2019 | 22 | 2019 |
| Small static electric field strength promotes aggregation-prone structures in amyloid-β(29-42) Y Lu, XF Shi, FR Salsbury Jr., P Derreumaux The Journal of Chemical Physics 146 (14), 145101, 2017 | 21 | 2017 |
| Structural, thermodynamical, and dynamical properties of oligomers formed by the amyloid NNQQ peptide: Insights from coarse-grained simulations Y Lu, G Wei, P Derreumaux The Journal of Chemical Physics 137 (2), 2012 | 21 | 2012 |
| Computational and synthetic studies towards improving rescinnamine as an inducer of MSH2-dependent apoptosis in cancer treatment KD Scarpinato, ES AbdelHafez, A Diamanduros, L Negureanu, Y Lu, ... Molecular Cancer Biology 1 (1), 2013 | 7* | 2013 |
| Recapturing the Correlated Motions of Protein Using Coarse-Grained Models Y Lu, FR Salsbury Jr. Protein & Peptide Letters, 2015 | 3 | 2015 |
| Impact of A2T and D23N mutations on C99 homodimer conformations Y Lu, FR Salsbury, P Derreumaux The Journal of Chemical Physics 157 (8), 2022 | 2 | 2022 |
| Impact of Amidation on Aβ25–35 Aggregation JCE Etaka, Y Lu, W Kang, FR Salsbury Jr, P Derreumaux The Journal of Physical Chemistry B 129 (8), 2149-2158, 2025 | 1 | 2025 |
| Autoinhibitory mechanisms of ERG studied by molecular dynamics simulations Y Lu, FR Salsbury Jr AIP Advances 5, 2015 | 1 | 2015 |
| Structural Insight into Melatonin’s Influence on the Conformation of Aβ42 Dimer Studied by Molecular Dynamics Simulation W Kang, Y Lu, JC Etaka, FR Salsbury Jr, P Derreumaux The Journal of Physical Chemistry B 128 (41), 9947-9958, 2024 | | 2024 |
| Recapturing the Correlated Motions of Protein by using Coarse Grained Models Y Lu, FR Salsbury Biophysical Journal 106 (2), 648a, 2014 | | 2014 |
| STRUCTURAL INSIGHT INTO THE POLYMORPHISM OF NNQNTF PROTOFIBRIL: IMPORTANCE OF INTERFACIAL WATER, POLAR AND AROMATIC RESIDUES Y Lu, W Xi, G Wei Journal of Theoretical and Computational Chemistry 12 (08), 1341012, 2013 | | 2013 |
Remo RohsProfessor and Chair of Quantitative and Computational Biology, University of Southern CaliforniaVerified email at usc.edu
