| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome research 22 (9), 1813-1831, 2012 | 2525 | 2012 |
| Absence of a simple code: how transcription factors read the genome M Slattery, T Zhou, L Yang, ACD Machado, R Gordân, R Rohs Trends in biochemical sciences 39 (9), 381-399, 2014 | 650 | 2014 |
| Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ... Cell 147 (6), 1270-1282, 2011 | 611 | 2011 |
| Disentangling the many layers of eukaryotic transcriptional regulation KM Lelli, M Slattery, RS Mann Annual review of genetics 46 (1), 43-68, 2012 | 329 | 2012 |
| Comparative analysis of regulatory information and circuits across distant species AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ... Nature 512 (7515), 453-456, 2014 | 250 | 2014 |
| Transcription factor choice in the Hippo signaling pathway: homothorax and yorkie regulation of the microRNA bantam in the progenitor domain of the Drosophila eye imaginal disc HW Peng, M Slattery, RS Mann Genes & development 23 (19), 2307-2319, 2009 | 236 | 2009 |
| Systematic evaluation of factors influencing ChIP-seq fidelity Y Chen, N Negre, Q Li, JO Mieczkowska, M Slattery, T Liu, Y Zhang, ... Nature methods 9 (6), 609-614, 2012 | 227 | 2012 |
| Deconvolving the recognition of DNA shape from sequence N Abe, I Dror, L Yang, M Slattery, T Zhou, HJ Bussemaker, R Rohs, ... Cell 161 (2), 307-318, 2015 | 221 | 2015 |
| Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes H Oh, M Slattery, L Ma, A Crofts, KP White, RS Mann, KD Irvine Cell reports 3 (2), 309-318, 2013 | 176 | 2013 |
| A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster A Jory, C Estella, MW Giorgianni, M Slattery, TR Laverty, GM Rubin, ... Cell reports 2 (4), 1014-1024, 2012 | 138 | 2012 |
| SELEX-seq: a method for characterizing the complete repertoire of binding site preferences for transcription factor complexes TR Riley, M Slattery, N Abe, C Rastogi, D Liu, RS Mann, HJ Bussemaker Hox Genes: Methods and Protocols, 255-278, 2014 | 124 | 2014 |
| Chemical inhibition of the TFIIH-associated kinase Cdk7/Kin28 does not impair global mRNA synthesis EI Kanin, RT Kipp, C Kung, M Slattery, A Viale, S Hahn, KM Shokat, ... Proceedings of the National Academy of Sciences 104 (14), 5812-5817, 2007 | 124 | 2007 |
| Identification of a functional antioxidant response element at the HIF1A locus SE Lacher, DC Levings, S Freeman, M Slattery Redox biology 19, 401-411, 2018 | 121 | 2018 |
| Control of mitochondrial structure and function by the Yorkie/YAP oncogenic pathway R Nagaraj, S Gururaja-Rao, KT Jones, M Slattery, N Negre, D Braas, ... Genes & development 26 (18), 2027-2037, 2012 | 114 | 2012 |
| ACE2 is required for daughter cell-specific G1 delay in Saccharomyces cerevisiae TL Laabs, DD Markwardt, MG Slattery, LL Newcomb, DJ Stillman, ... Proceedings of the National Academy of Sciences 100 (18), 10275-10280, 2003 | 114 | 2003 |
| Glucose Regulation of Saccharomyces cerevisiae Cell Cycle Genes LL Newcomb, JA Diderich, MG Slattery, W Heideman Eukaryotic cell 2 (1), 143-149, 2003 | 112 | 2003 |
| Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila M Slattery, L Ma, N Négre, KP White, RS Mann PloS one 6 (4), e14686, 2011 | 103 | 2011 |
| Transcription factor networks in Drosophila melanogaster DY Rhee, DY Cho, B Zhai, M Slattery, L Ma, J Mintseris, CY Wong, ... Cell reports 8 (6), 2031-2043, 2014 | 100 | 2014 |
| Yorkie promotes transcription by recruiting a histone methyltransferase complex H Oh, M Slattery, L Ma, KP White, RS Mann, KD Irvine Cell reports 8 (2), 449-459, 2014 | 94 | 2014 |
| Beyond antioxidant genes in the ancient Nrf2 regulatory network SE Lacher, JS Lee, X Wang, MR Campbell, DA Bell, M Slattery Free Radical Biology and Medicine 88, 452-465, 2015 | 90 | 2015 |
Richard S. MannProfessor of Biochemistry, Neuroscience and Systems Biology, Zuckerman Mind Brain Behavior InstituteVerified email at columbia.edu
