| Structural biology in the clouds: the WeNMR-EOSC ecosystem RV Honorato, PI Koukos, B Jiménez-García, A Tsaregorodtsev, M Verlato, ... Frontiers in molecular biosciences 8, 729513, 2021 | 707 | 2021 |
| Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015 | 514 | 2015 |
| SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation J Jankauskaitė, B Jiménez-García, J Dapkūnas, J Fernández-Recio, ... Bioinformatics 35 (3), 462-469, 2019 | 418 | 2019 |
| The HADDOCK2. 4 web server for integrative modeling of biomolecular complexes RV Honorato, ME Trellet, B Jiménez-García, JJ Schaarschmidt, M Giulini, ... Nature protocols 19 (11), 3219-3241, 2024 | 381 | 2024 |
| pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring B Jiménez-García, C Pons, J Fernández-Recio Bioinformatics 29 (13), 1698-1699, 2013 | 337 | 2013 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 176 | 2016 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 143 | 2019 |
| LightDock: a new multi-scale approach to protein–protein docking B Jiménez-García, J Roel-Touris, M Romero-Durana, M Vidal, ... Bioinformatics 34 (1), 49-55, 2018 | 135 | 2018 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 130 | 2021 |
| Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 115 | 2013 |
| Modeling antibody-antigen complexes by information-driven docking F Ambrosetti, B Jiménez-García, J Roel-Touris, AMJJ Bonvin Structure 28 (1), 119-129. e2, 2020 | 107 | 2020 |
| Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 84 | 2023 |
| CCharPPI web server: computational characterization of protein–protein interactions from structure IH Moal, B Jiménez-García, J Fernández-Recio Bioinformatics 31 (1), 123-125, 2015 | 83 | 2015 |
| pyDockSAXS: protein–protein complex structure by SAXS and computational docking B Jiménez-García, C Pons, DI Svergun, P Bernadó, J Fernández-Recio Nucleic acids research 43 (W1), W356-W361, 2015 | 80 | 2015 |
| Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014 | 66 | 2014 |
| A protein‐RNA docking benchmark (II): Extended set from experimental and homology modeling data L Pérez‐Cano, B Jiménez‐García, J Fernández‐Recio Proteins: Structure, Function, and Bioinformatics 80 (7), 1872-1882, 2012 | 66 | 2012 |
| proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking F Ambrosetti, TH Olsen, PP Olimpieri, B Jiménez-García, E Milanetti, ... Bioinformatics 36 (20), 5107-5108, 2020 | 59 | 2020 |
| Integrative modeling of membrane-associated protein assemblies J Roel-Touris, B Jiménez-García, AMJJ Bonvin Nature communications 11 (1), 6210, 2020 | 48 | 2020 |
| pyDockDNA: a new web server for energy-based protein-DNA docking and scoring LÁ Rodríguez-Lumbreras, B Jiménez-García, S Giménez-Santamarina, ... Frontiers in Molecular Biosciences, 1124, 2022 | 46 | 2022 |
| PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes B Jiménez-García, K Elez, PI Koukos, AM Bonvin, A Vangone Bioinformatics 35 (22), 4821-4823, 2019 | 46 | 2019 |
Juan Fernandez-RecioInstituto de Ciencias de la Vid y del Vino (ICVV), CSIC / Uni. Rioja / Gob. RiojaVerified email at icvv.es
