| The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ... Journal of molecular biology 428 (4), 720-725, 2016 | 3067 | 2016 |
| PRODIGY: a web server for predicting the binding affinity of protein–protein complexes LC Xue, JP Rodrigues, PL Kastritis, AM Bonvin, A Vangone Bioinformatics 32 (23), 3676-3678, 2016 | 1403 | 2016 |
| On the binding affinity of macromolecular interactions: daring to ask why proteins interact PL Kastritis, AMJJ Bonvin Journal of The Royal Society Interface 10 (79), 20120835, 2013 | 689 | 2013 |
| Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015 | 514 | 2015 |
| In situ structural analysis of the human nuclear pore complex A Von Appen, J Kosinski, L Sparks, A Ori, AL DiGuilio, B Vollmer, ... Nature 526 (7571), 140-143, 2015 | 480 | 2015 |
| A structure‐based benchmark for protein–protein binding affinity PL Kastritis, IH Moal, H Hwang, Z Weng, PA Bates, AMJJ Bonvin, J Janin Protein Science 20 (3), 482-491, 2011 | 378 | 2011 |
| Cross-linking mass spectrometry for investigating protein conformations and protein–protein interactions─ a method for all seasons L Piersimoni, PL Kastritis, C Arlt, A Sinz Chemical Reviews 122 (8), 7500-7531, 2021 | 318 | 2021 |
| Are Scoring Functions in Protein− Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark PL Kastritis, AMJJ Bonvin Journal of proteome research 9 (5), 2216-2225, 2010 | 308 | 2010 |
| Structure and assembly of the nuclear pore complex B Hampoelz, A Andres-Pons, P Kastritis, M Beck Annual review of biophysics 48 (1), 515-536, 2019 | 290 | 2019 |
| Antimicrobial and Efflux Pump Inhibitory Activity of Caffeoylquinic Acids from Artemisia absinthium against Gram-Positive Pathogenic Bacteria YC Fiamegos, PL Kastritis, V Exarchou, H Han, AMJJ Bonvin, J Vervoort, ... PloS one 6 (4), e18127, 2011 | 246 | 2011 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 176 | 2016 |
| Building macromolecular assemblies by information-driven docking E Karaca, ASJ Melquiond, SJ De Vries, PL Kastritis, AMJJ Bonvin Molecular & Cellular Proteomics 9 (8), 1784-1794, 2010 | 166 | 2010 |
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of Molecular Biology 414 (2), 289-302, 2011 | 160 | 2011 |
| Proteins feel more than they see: fine-tuning of binding affinity by properties of the non-interacting surface PL Kastritis, JP Rodrigues, GE Folkers, R Boelens, AMJJ Bonvin Journal of molecular biology 426 (14), 2632-2652, 2014 | 157 | 2014 |
| Clustering biomolecular complexes by residue contacts similarity JP Rodrigues, M Trellet, C Schmitz, P Kastritis, E Karaca, ASJ Melquiond, ... Proteins: Structure, Function, and Bioinformatics 80 (7), 1810-1817, 2012 | 136 | 2012 |
| Capturing protein communities by structural proteomics in a thermophilic eukaryote PL Kastritis, FJ O'Reilly, T Bock, Y Li, MZ Rogon, K Buczak, N Romanov, ... Molecular systems biology 13 (7), 936, 2017 | 129 | 2017 |
| Subnanometre-resolution structure of the doublet microtubule reveals new classes of microtubule-associated proteins M Ichikawa, D Liu, PL Kastritis, K Basu, TC Hsu, S Yang, KH Bui Nature communications 8 (1), 15035, 2017 | 128 | 2017 |
| Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 115 | 2013 |
| Spatiotemporal variation of mammalian protein complex stoichiometries A Ori, M Iskar, K Buczak, P Kastritis, L Parca, A Andrés-Pons, S Singer, ... Genome biology 17 (1), 47, 2016 | 112 | 2016 |
| Haloadaptation: insights from comparative modeling studies of halophilic archaeal DHFRs PL Kastritis, NC Papandreou, SJ Hamodrakas International Journal of Biological Macromolecules 41 (4), 447-453, 2007 | 89 | 2007 |
Alexandre M.J.J. BonvinUtrecht universityVerified email at uu.nl
