| ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng Bioinformatics 30 (12), 1771-1773, 2014 | 1920 | 2014 |
| Combining quantum mechanics methods with molecular mechanics methods in ONIOM T Vreven, KS Byun, I Komáromi, S Dapprich, JA Montgomery Jr, ... Journal of Chemical Theory and Computation 2 (3), 815-826, 2006 | 1135 | 2006 |
| Geometry optimization with QM/MM, ONIOM, and other combined methods. I. Microiterations and constraints T Vreven, K Morokuma, Ö Farkas, HB Schlegel, MJ Frisch Journal of computational chemistry 24 (6), 760-769, 2003 | 735 | 2003 |
| On the application of the IMOMO (integrated molecular orbital+ molecular orbital) method T Vreven, K Morokuma Journal of Computational Chemistry 21 (16), 1419-1432, 2000 | 684 | 2000 |
| Protein–protein docking benchmark version 4.0 H Hwang, T Vreven, J Janin, Z Weng Proteins: Structure, Function, and Bioinformatics 78 (15), 3111-3114, 2010 | 556 | 2010 |
| Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015 | 514 | 2015 |
| A direct derivative MC-SCF procedure N Yamamoto, T Vreven, MA Robb, MJ Frisch, H Bernhard Schlegel Chemical physics letters 250 (3), 373-378, 1996 | 289 | 1996 |
| The HP1 Homolog Rhino Anchors a Nuclear Complex that Suppresses piRNA Precursor Splicing Z Zhang, J Wang, N Schultz, F Zhang, SS Parhad, S Tu, T Vreven, ... Cell 157 (6), 1353-1363, 2014 | 277 | 2014 |
| UAP56 Couples piRNA Clusters to the Perinuclear Transposon Silencing Machinery F Zhang, J Wang, J Xu, Z Zhang, BS Koppetsch, N Schultz, T Vreven, ... Cell 151 (4), 871-884, 2012 | 274 | 2012 |
| Hybrid methods: Oniom (qm: mm) and qm/mm T Vreven, K Morokuma Annual Reports in Computational Chemistry 2, 35-51, 2006 | 274 | 2006 |
| The ONIOM-PCM method: Combining the hybrid molecular orbital method and the polarizable continuum model for solvation. Application to the geometry and properties of a … T Vreven, B Mennucci, CO da Silva, K Morokuma, J Tomasi The Journal of chemical physics 115, 62, 2001 | 269 | 2001 |
| Ultrafast radiationless deactivation of organic dyes: evidence for a two-state two-mode pathway in polymethine cyanines A Sanchez-Galvez, P Hunt, MA Robb, M Olivucci, T Vreven, HB Schlegel Journal of the American Chemical Society 122 (12), 2911-2924, 2000 | 241 | 2000 |
| Ab initio photoisomerization dynamics of a simple retinal chromophore model T Vreven, F Bernardi, M Garavelli, M Olivucci, MA Robb, HB Schlegel Journal of the American Chemical Society 119 (51), 12687-12688, 1997 | 233 | 1997 |
| The azulene S1 state decays via a conical intersection: a CASSCF study with MMVB dynamics MJ Bearpark, F Bernardi, S Clifford, M Olivucci, MA Robb, BR Smith, ... Journal of the American Chemical Society 118 (1), 169-175, 1996 | 229 | 1996 |
| Investigation of the S0 S1 excitation in bacteriorhodopsin with the ONIOM (MO: MM) hybrid method T Vreven, K Morokuma Theoretical Chemistry Accounts 109 (3), 125-132, 2003 | 218 | 2003 |
| Photoisomerization path for a realistic retinal chromophore model: the nonatetraeniminium cation M Garavelli, T Vreven, P Celani, F Bernardi, MA Robb, M Olivucci Journal of the American Chemical Society 120 (6), 1285-1288, 1998 | 204 | 1998 |
| Geometry optimization with QM/MM methods II: Explicit quadratic coupling T Vreven, MJ Frisch, KN Kudin, HB Schlegel, K Morokuma Molecular Physics 104 (5-7), 701-714, 2006 | 179 | 2006 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 176 | 2016 |
| Potential-energy surfaces for ultrafast photochemistry static and dynamic aspects M Garavelli, F Bernardi, M Olivucci, T Vreven, P Celani, MA Robb Faraday Discuss. 110, 51-70, 1998 | 175 | 1998 |
| Hybrid ab-initio/empirical molecular dynamics: combining the ONIOM scheme with the atom-centered density matrix propagation (ADMP) approach N Rega, SS Iyengar, GA Voth, HB Schlegel, T Vreven, MJ Frisch The Journal of Physical Chemistry B 108 (13), 4210-4220, 2004 | 174 | 2004 |
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolVerified email at umassmed.edu
