| Nextflow enables reproducible computational workflows P Di Tommaso, M Chatzou, EW Floden, PP Barja, E Palumbo, ... Nature Biotechnology 35 (4), 316-319, 2017 | 4144 | 2017 |
| Rfam 12.0: updates to the RNA families database EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ... Nucleic acids research 43 (D1), D130-D137, 2015 | 1175 | 2015 |
| A functional extracellular matrix biomaterial derived from ovine forestomach S Lun, SM Irvine, KD Johnson, NJ Fisher, EW Floden, L Negron, ... Biomaterials 31 (16), 4517-4529, 2010 | 121 | 2010 |
| Quantification of in vitro and in vivo angiogenesis stimulated by ovine forestomach matrix biomaterial SM Irvine, J Cayzer, EM Todd, S Lun, EW Floden, L Negron, JN Fisher, ... Biomaterials 32 (27), 6351-6361, 2011 | 90 | 2011 |
| PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases EW Floden, PD Tommaso, M Chatzou, C Magis, C Notredame, JM Chang Nucleic acids research 44 (W1), W339-W343, 2016 | 82 | 2016 |
| Biophysical characterization of ovine forestomach extracellular matrix biomaterials EW Floden, SFF Malak, MM Basil‐Jones, L Negron, JN Fisher, S Lun, ... Journal of Biomedical Materials Research Part B: Applied Biomaterials 96 (1 …, 2011 | 52 | 2011 |
| Large multiple sequence alignments with a root-to-leaf regressive method E Garriga, P Di Tommaso, C Magis, I Erb, L Mansouri, A Baltzis, ... Nature biotechnology 37 (12), 1466-1470, 2019 | 40 | 2019 |
| Empowering bioinformatics communities with Nextflow and nf-core BE Langer, A Amaral, MO Baudement, F Bonath, M Charles, PK Chitneedi, ... Genome Biology 26 (1), 228, 2025 | 38 | 2025 |
| Multiple sequence alignment computation using the t-coffee regressive algorithm implementation E Garriga, P Di Tommaso, C Magis, I Erb, L Mansouri, A Baltzis, E Floden, ... Multiple sequence alignment: Methods and protocols, 89-97, 2020 | 18 | 2020 |
| Generalized bootstrap supports for phylogenetic analyses of protein sequences incorporating alignment uncertainty M Chatzou, EW Floden, P Di Tommaso, O Gascuel, C Notredame Systematic Biology 67 (6), 997-1009, 2018 | 17 | 2018 |
| Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability JM Chang, EW Floden, J Herrero, O Gascuel, P Di Tommaso, ... Bioinformatics 37 (11), 1506-1514, 2021 | 15 | 2021 |
| Nextflow, an efficient tool to improve computation numerical stability in genomic analysis PD Tommaso, EW Floden, C Magis, E Palumbo, C Notredame Biologie Aujourd'hui 211 (3), 233-237, 2017 | 11* | 2017 |
| Approaches for containerized scientific workflows in cloud environments with applications in life science O Spjuth, M Capuccini, M Carone, A Larsson, W Schaal, JA Novella, ... F1000Research 10, 513, 2021 | 9 | 2021 |
| HCVIVdb: The hepatitis-C IRES variation database EW Floden, A Khawaja, V Vopálenský, M Pospíšek BMC microbiology 16 (1), 187, 2016 | 8 | 2016 |
| Fast and accurate large multiple sequence alignments using root-to-leave regressive computation E Garriga, PD Tommaso, C Magis, I Erb, H Laayouni, F Kondrashov, ... bioRxiv, 490235, 2018 | 2 | 2018 |
| Using the Nextflow framework for reproducible in-silico omics analyses across clusters and clouds P Di Tommaso, E Floden, M Chatzou, C Notredame PeerJ Preprints 5, e2796v1, 2017 | 2 | 2017 |
| Nextflow: DSL for data-driven computational pipelines P Di Tommaso, M Chatzou, E Floden, P Prieto Barja, E Palumbo, ... Astrophysics Source Code Library, ascl: 2305.024, 2023 | 1 | 2023 |
| An nf-core framework for the systematic comparison of alternative modeling tools: the multiple sequence alignment case study L Santus, J Espinosa-Carrasco, L Rauschning, J Mir-Pedrol, I Trujnara, ... NAR genomics and bioinformatics 7 (3), lqaf104, 2025 | | 2025 |
| Empowering Bioinformatics Communities with nf-core: The success of an open-source bioinformatics ecosystem BE Langer, A Amaral, MO Baudement, F Bonath, M Charles, PK Chitneedi, ... Intelligent Systems for Molecular Biology/European Conference on …, 2025 | | 2025 |
| Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method E Garriga, P di Tommaso, C Magis, I Erb, L Mansouri, A Baltzis, ... | | 2018 |
Cedric NotredameCentre for Genomic Regulation, SpainVerified email at crg.eu
