| Understanding sequencing data as compositions: an outlook and review TP Quinn, I Erb, MF Richardson, TM Crowley Bioinformatics 34 (16), 2870-2878, 2018 | 395 | 2018 |
| A field guide for the compositional analysis of any-omics data TP Quinn, I Erb, G Gloor, C Notredame, MF Richardson, TM Crowley GigaScience 8 (9), giz107, 2019 | 336 | 2019 |
| Multiple sequence alignment modeling: methods and applications M Chatzou, C Magis, JM Chang, C Kemena, G Bussotti, I Erb, ... Briefings in bioinformatics 17 (6), 1009-1023, 2016 | 323 | 2016 |
| Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes A Vlasova, S Capella-Gutiérrez, M Rendón-Anaya, M Hernández-Oñate, ... Genome biology 17 (1), 32, 2016 | 248 | 2016 |
| Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ... Genome biology 17 (1), 251, 2016 | 220 | 2016 |
| SwissRegulon: a database of genome-wide annotations of regulatory sites M Pachkov, I Erb, N Molina, E Van Nimwegen Nucleic acids research 35 (suppl_1), D127-D131, 2007 | 170 | 2007 |
| The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion A Taddei, G Van Houwe, S Nagai, I Erb, E van Nimwegen, SM Gasser Genome research 19 (4), 611-625, 2009 | 155 | 2009 |
| Alignathon: a competitive assessment of whole-genome alignment methods D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ... Genome research 24 (12), 2077-2089, 2014 | 137 | 2014 |
| Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures JF Taly, C Magis, G Bussotti, JM Chang, P Di Tommaso, I Erb, ... Nature Protocols 6 (11), 1669-1682, 2011 | 125 | 2011 |
| MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences P Arnold, I Erb, M Pachkov, N Molina, E van Nimwegen Bioinformatics 28 (4), 487-494, 2012 | 116 | 2012 |
| How should we measure proportionality on relative gene expression data? I Erb, C Notredame Theory in Biosciences 135 (1), 21-36, 2016 | 101 | 2016 |
| Third Report on Chicken Genes and Chromosomes 2015Prepared by M Schmid, J Smith, DW Burt, BL Aken, PB Antin, AL Archibald, C Ashwell, ... Cytogenetic and genome research 145 (2), 78-179, 2015 | 96 | 2015 |
| T-Coffee: Tree-based consistency objective function for alignment evaluation C Magis, JF Taly, G Bussotti, JM Chang, P Di Tommaso, I Erb, ... Multiple Sequence Alignment Methods, 117-129, 2013 | 86 | 2013 |
| Aitchison’s compositional data analysis 40 years on: A reappraisal M Greenacre, E Grunsky, J Bacon-Shone, I Erb, T Quinn Statistical Science 38 (3), 386-410, 2023 | 72 | 2023 |
| Impaired development of neocortical circuits contributes to the neurological alterations in DYRK1A haploinsufficiency syndrome J Arranz, E Balducci, K Arató, G Sánchez-Elexpuru, S Najas, A Parras, ... Neurobiology of disease 127, 210-222, 2019 | 49 | 2019 |
| Transcription factor binding site positioning in yeast: proximal promoter motifs characterize TATA-less promoters I Erb, E van Nimwegen PLoS One 6 (9), e24279, 2011 | 48 | 2011 |
| Principal component analysis of the effects of environmental enrichment and (-)-epigallocatechin-3-gallate on age-associated learning deficits in a mouse model of Down syndrome S Catuara-Solarz, J Espinosa-Carrasco, I Erb, K Langohr, C Notredame, ... Frontiers in behavioral neuroscience 9, 330, 2015 | 43 | 2015 |
| Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and … U Schlecht, I Erb, P Demougin, N Robine, V Borde, E Nimwegen, ... Molecular biology of the cell 19 (5), 2193-2207, 2008 | 42 | 2008 |
| Large multiple sequence alignments with a root-to-leaf regressive method E Garriga, P Di Tommaso, C Magis, I Erb, L Mansouri, A Baltzis, ... Nature biotechnology 37 (12), 1466-1470, 2019 | 41 | 2019 |
| Partial correlations in compositional data analysis I Erb Applied Computing and Geosciences 6, 100026, 2020 | 40 | 2020 |
Cedric NotredameCentre for Genomic Regulation, SpainVerified email at crg.eu
