| Large multiple sequence alignments with a root-to-leaf regressive method E Garriga, P Di Tommaso, C Magis, I Erb, L Mansouri, A Baltzis, ... Nature biotechnology 37 (12), 1466-1470, 2019 | 40 | 2019 |
| Highly significant improvement of protein sequence alignments with AlphaFold2 A Baltzis, L Mansouri, S Jin, BE Langer, I Erb, C Notredame Bioinformatics 38 (22), 5007-5011, 2022 | 20 | 2022 |
| Characterizing a partially ordered miniprotein through folding molecular dynamics simulations: Comparison with the experimental data AS Baltzis, NM Glykos Protein Science 25 (3), 587-596, 2016 | 20 | 2016 |
| Multiple sequence alignment computation using the t-coffee regressive algorithm implementation E Garriga, P Di Tommaso, C Magis, I Erb, L Mansouri, A Baltzis, E Floden, ... Multiple sequence alignment: Methods and protocols, 89-97, 2020 | 18 | 2020 |
| multistrap: boosting phylogenetic analyses with structural information A Baltzis, L Santus, BE Langer, C Magis, DM de Vienne, O Gascuel, ... Nature Communications 16 (1), 293, 2025 | 6 | 2025 |
| Clustering of molecular dynamics trajectories via peak-picking in multidimensional PCA-derived distributions AS Baltzis, PI Koukos, NM Glykos arXiv preprint arXiv:1512.04024, 2015 | 6 | 2015 |
| Phylogenetic and functional characterization of water bears (Tardigrada) tubulins K Novotná Floriančičová, A Baltzis, J Smejkal, M Czerneková, ... Scientific Reports 13 (1), 5194, 2023 | 2 | 2023 |
| Improving sequence alignments with AlphaFold2 regardless of structural modeling accuracy A Baltzis, L Mansouri, S Jin, BE Langer, I Erb, C Notredame bioRxiv, 2022.05. 24.492699, 2022 | 2 | 2022 |
| An nf-core framework for the systematic comparison of alternative modeling tools: the multiple sequence alignment case study L Santus, J Espinosa-Carrasco, L Rauschning, J Mir-Pedrol, I Trujnara, ... NAR Genomics and Bioinformatics 7 (3), lqaf104, 2025 | | 2025 |
| Phylogenetic and functional characterization of water bears (Tardigrada) tubulins KN Floriancicova, A Baltzis, J Smejkal, M Czernekova, L Kaczmarek, ... SCIENTIFIC REPORTS 13 (1), 2023 | | 2023 |
| Impact of recent protein structure prediction methods on homology, evolutionary and functional inference A Baltzis Universitat Pompeu Fabra, 2023 | | 2023 |
| Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method E Garriga, P di Tommaso, C Magis, I Erb, L Mansouri, A Baltzis, ... | | 2018 |
| Phylogene3c analysis of tardigrade tubulins KN Floriančičová, A Baltzis, M Czerneková, J Smejkal, C Notredame, ... | | |
| Multidimensional PCA-based clustering of molecular dynamics trajectories A Baltzis, NM Glykos | | |
