WO2025168134A1 - Oligonucleotide targeting complement component 3 (c3) gene and use thereof - Google Patents
Oligonucleotide targeting complement component 3 (c3) gene and use thereofInfo
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- WO2025168134A1 WO2025168134A1 PCT/CN2025/076573 CN2025076573W WO2025168134A1 WO 2025168134 A1 WO2025168134 A1 WO 2025168134A1 CN 2025076573 W CN2025076573 W CN 2025076573W WO 2025168134 A1 WO2025168134 A1 WO 2025168134A1
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
- A61K31/713—Double-stranded nucleic acids or oligonucleotides
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P13/00—Drugs for disorders of the urinary system
- A61P13/12—Drugs for disorders of the urinary system of the kidneys
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
Definitions
- the present disclosure relates to an oligonucleotide, in particular to an oligonucleotide for inhibiting the expression of complement C3 gene and treating diseases associated with abnormal complement expression.
- the complement system is one of the oldest branches of the immune system, discovered over a century ago. It is called complement because people discovered that in addition to antibodies, there are other proteins in the body that have a supplementary effect on the immune system.
- Complement is a serum protein that primarily mediates immune and inflammatory responses. It can be activated by antigen-antibody complexes or microorganisms, leading to the lysis or phagocytosis of pathogenic microorganisms.
- the complement system is not only an important effector mechanism for the body's natural immune defense, but also one of the main humoral immune effector mechanisms. When involved in defense, a large amount of complement precursor proteins are rapidly produced to respond to and detect threats, playing an important role in eliminating the invasion of foreign antigens and maintaining the balance of the body's internal environment.
- complement activation is an immune defense response of the host, abnormal overactivation can cause tissue and organ damage, leading to a variety of diseases such as PNH (paroxysmal nocturnal hemoglobinuria), atypical hemolytic uremic syndrome (aHUS), C3 glomerulopathy, and age-related macular degeneration (AMD). Therefore, targeted complement drugs have broad market prospects.
- PNH paroxysmal nocturnal hemoglobinuria
- aHUS atypical hemolytic uremic syndrome
- C3 glomerulopathy C3 glomerulopathy
- AMD age-related macular degeneration
- the entire activation process of the complement system is manifested as a cascade of enzymatic reactions of a series of serine proteases, ultimately forming a membrane attack complex that causes target cell damage.
- the activation of the complement system is mainly achieved through three relatively independent yet interconnected pathways: the classical pathway, the alternative pathway, and the lectin pathway ( Figure 1).
- the C5 convertases produced by the three pathways can all cleave C5, triggering a common terminal effect, and then exerting a variety of biological effects such as regulating phagocytosis, lysing cells, mediating inflammation, immunomodulation, and clearing immune complexes.
- the development of drugs targeting targets related to the three pathways has been successfully transformed. Given that the complement-related pathogenesis of some rare diseases is clear and specific, patients with rare diseases currently benefit the most from it.
- Complement C3 is the most abundant complement component in serum, located upstream of C5. It is the terminal effector molecule in multiple complement activation pathways. Complement C3 is cleaved into C3a and C3b by C3 convertase, playing a crucial role in both the classical and alternative complement activation pathways.
- Complement C5 a representative member of the membrane attack complex (MAC) in the complement system, is a popular target in complement-targeted drug development.
- C5 inhibitors are among the earliest approved complement drugs.
- eculizumab Soliris
- PNH paroxysmal nocturnal hemoglobinuria
- Soliris is the world's first C5 complement inhibitor, administered via biweekly injection of eculizumab. It is also the first specific treatment for patients with paroxysmal nocturnal hemorrhage (PNH). Since then, Soliris has also been approved for atypical hemolytic uremic syndrome (aHUS), generalized myasthenia gravis (gMG), and neuromyelitis optica in adults.
- aHUS atypical hemolytic uremic syndrome
- gMG generalized myasthenia gravis
- neuromyelitis optica in adults.
- Pegcetacoplan is a synthetic cyclic peptide conjugated to a polyethylene glycol polymer that specifically binds to C3 and C3b. It is currently being developed for the treatment of various diseases, including paroxysmal nocturnal hemoglobinuria (PNH), geographic atrophy (GA), and C3 glomerulopathy.
- PNH paroxysmal nocturnal hemoglobinuria
- GA geographic atrophy
- C3 glomerulopathy C3 glomerulopathy
- Inappropriate activation of the complement system is responsible for the propagation and/or initiation of pathological processes in many different diseases, including, for example, paroxysmal nocturnal hemoglobinuria (PNH), atypical hemolytic uremic syndrome (aHUS), neuromyelitis optica (NMO), multifocal motor neuropathy (MMN), myasthenia gravis (MG), C3 glomerulonephritis, systemic lupus erythematosus, rheumatoid arthritis, ischemia-reperfusion injury, and neurodegenerative diseases.
- PNH paroxysmal nocturnal hemoglobinuria
- aHUS atypical hemolytic uremic syndrome
- NMO neuromyelitis optica
- MN multifocal motor neuropathy
- MG myasthenia gravis
- C3 glomerulonephritis systemic lupus erythematosus
- ischemia-reperfusion injury and neurodegenerative diseases.
- the purpose of the present disclosure is to provide an inhibitor for inhibiting the expression of complement component C3 with good efficacy, high safety and long-lasting efficacy.
- the present disclosure provides oligonucleotides or pharmaceutically acceptable salts thereof and methods of using the oligonucleotides or pharmaceutically acceptable salts thereof to inhibit the expression of complement component C3 gene in cells or mammals, wherein the oligonucleotide targets the complement component C3 gene. Also provided herein are compositions and methods for treating pathological conditions and diseases in mammals caused by the expression of complement component C3 gene.
- the oligonucleotide is a double-stranded RNA (dsRNA) that directs the sequence-specific degradation of mRNA through a process known as RNA interference (RNAi).
- the present disclosure provides an oligonucleotide or a pharmaceutically acceptable salt thereof for inhibiting the expression of the complement component C3 gene, wherein the oligonucleotide comprises a sense chain and an antisense chain, wherein the sense chain has a sequence having at least 80% sequence identity with a sequence shown in any one of SEQ ID NO. SEQ ID NO. 1-49 and 51-305 or a fragment thereof, or a modified sequence of the aforementioned sequence or its fragment, and preferably has a sequence identity of 85%, 90%, 95%, 96%, 97%, 98%, or 99% or more; and the antisense chain has a sequence having at least 80% sequence identity with a sequence shown in any one of SEQ ID NO.
- the present disclosure provides a conjugate for inhibiting the expression of complement component C3 or a pharmaceutically acceptable salt thereof, comprising: (i) an oligonucleotide or a pharmaceutically acceptable salt thereof, and (ii) a ligand conjugated to the oligonucleotide or a pharmaceutically acceptable salt thereof, wherein at least one nucleotide of the oligonucleotide is conjugated to a targeting ligand.
- the present disclosure provides a composition comprising the aforementioned oligonucleotide or a pharmaceutically acceptable salt thereof, or the aforementioned conjugate or a pharmaceutically acceptable salt thereof, and optionally a pharmaceutically acceptable carrier.
- the present disclosure provides use of the aforementioned oligonucleotide or a pharmaceutically acceptable salt, conjugate or a pharmaceutically acceptable salt or composition thereof in the preparation of a medicament for treating and/or preventing a complement component C3-related disorder.
- the present disclosure provides a method for treating and/or preventing complement component C3-associated disorders, disorders and/or conditions in a subject by administering a therapeutic agent (e.g., the aforementioned oligonucleotide or a pharmaceutically acceptable salt thereof, or the aforementioned conjugate or a pharmaceutically acceptable salt thereof, or the aforementioned composition, or a vector or transgene encoding the oligonucleotide) to the subject.
- a therapeutic agent e.g., the aforementioned oligonucleotide or a pharmaceutically acceptable salt thereof, or the aforementioned conjugate or a pharmaceutically acceptable salt thereof, or the aforementioned composition, or a vector or transgene encoding the oligonucleotide
- the present disclosure provides methods for treating and/or preventing complement C3-associated disorders, disorders and/or conditions in a subject using the aforementioned oligonucleotides or pharmaceutically acceptable salts thereof, conjugates or pharmaceutically acceptable salts thereof, or compositions in combination with other drugs and/or other therapeutic methods.
- oligonucleotide disclosed herein can effectively reduce the level of complement component C3 in the body and is an effective inhibitor of complement component C3.
- Figure 1 shows the complement activation pathway.
- FIG2 shows a flow chart of siRNA solid phase synthesis.
- Figure 3 shows the enzyme cleavage map of RA177 pFB-AAV-CAG-Gluc-2A-HsC3_P1.
- Figure 4 shows the enzyme cleavage map of RA178 pFB-AAV-CAG-Gluc-2A-HsC3_P2.
- Figure 5 shows the in vivo efficacy of hC3 siRNA (AAV hC3 transgenic mice).
- Figure 6 shows the in vivo efficacy of hC3 siRNA (hC3 transgenic mice).
- the term “approximately” or “approximately” as applied to one or more target values refers to a value similar to a reference value.
- the term “approximately” or “approximately” refers to a value falling within 20%, 19%, 18%, 17%, 16%, 15%, 14%, 13%, 12%, 11%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1% or less of the reference value in either direction (greater than or less than) or less (unless such numerals will exceed 100% of possible values).
- RNAi agents of complement component C3 are described herein for selectively and effectively inhibiting the expression of complement component C3 gene.
- the RNAi agents of complement component C3 described herein can be used to prevent or treat the following diseases or to prepare medicaments for preventing or treating the following diseases, including but not limited to: cold agglutinin disease (CAD), warm autoimmune hemolytic anemia, and paroxysmal nocturnal hemoglobinuria (PNH), lupus nephritis (LN), bullous pemphigoid, pemphigus, such as pemphigus vulgaris (PV) and pemphigus foliaceus (PF), or C3 glomerulopathy.
- CAD cold agglutinin disease
- PNH paroxysmal nocturnal hemoglobinuria
- LN lupus nephritis
- LN lupus nephritis
- pemphigus such as pemphigus vulgaris (PV)
- target sequence refers to a contiguous portion of the nucleotide sequence of an mRNA molecule formed during transcription of a complement component C3 gene, including mRNA that is a product of RNA processing of the primary transcript.
- complementary refers to the structural relationship that allows nucleotide to form base pairs with each other between nucleotide (for example, on relative nucleic acid or on two nucleotides on the relative region of single nucleic acid chain).
- the purine nucleotides complementary to the pyrimidine nucleotides of a nucleic acid can be base paired together by forming hydrogen bonds with each other.
- complementary nucleotides can be base paired in Watson-Crick (Watson-Crick) mode or in any other manner that allows to form a stable duplex.
- two nucleic acids can have and be complementary to each other to form the nucleotide sequence of complementary region, as described herein.
- deoxyribonucleotide refers to a nucleotide that has a hydrogen at the 2' position of its pentose sugar compared to a ribonucleotide.
- a modified deoxyribonucleotide is a deoxyribonucleotide that has a modification or substitution of one or more atoms other than the 2' position, including a modification or substitution in or of a sugar, a phosphate group, or a base.
- the oligonucleotide can be, but is not limited to, small interfering RNA (siRNA), microRNA (miRNA), short hairpin RNA (shRNA), Dicer substrate interfering RNA (dsiRNA), antisense oligonucleotide, short siRNA or single-stranded siRNA.
- the double-stranded oligonucleotide is an RNAi oligonucleotide.
- the complementary base pairing of one or more duplex regions of a double-stranded oligonucleotide is formed from a single nucleic acid chain, and the single nucleic acid chain is folded (for example, via a hairpin) to provide the complementary antiparallel sequence of the nucleotides of base pairing together.
- a double-stranded oligonucleotide comprises two covalently separated nucleic acid chains that are completely duplexed from each other.
- a double-stranded oligonucleotide comprises partially duplexed, for example, two covalently separated nucleic acid chains with an overhang at one or both ends.
- each strand or both strands may also comprise one or more non-ribonucleotides, such as deoxyribonucleotides or modified nucleotides.
- RNAi may comprise ribonucleotides having chemical modifications; RNAi may comprise substantial modifications at multiple nucleotides.
- RNA interference agent refers to an agent that comprises RNA, as such terms are defined herein, and that mediates targeted cleavage of RNA transcripts via the RNA-induced silencing complex (RISC) pathway.
- RISC RNA-induced silencing complex
- RNA interference is a process that directs sequence-specific degradation of mRNA. RNAi modulates, for example, inhibits expression of complement component C3 in cells, for example, cells within an individual, such as a mammalian individual.
- modified nucleotide refers to a nucleotide that independently has a modified sugar moiety, a modified internucleotide linkage, or a modified nucleobase, or any combination thereof.
- modified nucleotide encompasses substitutions, additions, or removals of internucleoside linkages, sugar moieties, or nucleobases, such as functional groups or atoms. Modifications suitable for use with the agents of the present disclosure include all types of modifications disclosed herein or known in the art.
- nucleotide overhang refers to at least one unpaired nucleotide that protrudes from the duplex structure of a double-stranded RNAi.
- a nucleotide overhang exists when the 3' end of one strand of a dsRNA extends beyond the 5' end of the other strand, or vice versa.
- the dsRNA may include an overhang of at least one nucleotide; alternatively, the overhang may include at least two nucleotides, at least three nucleotides, at least four nucleotides, at least five nucleotides or more.
- the nucleotide overhang may include or consist of nucleotide/nucleoside analogs, including deoxynucleotides/nucleosides.
- the overhang may be on the sense strand, the antisense strand, or any combination thereof.
- the nucleotides of the overhang may be present on the 5' end, the 3' end, or both ends of the antisense strand or the sense strand of the dsRNA.
- naked sequence refers to an unmodified nucleotide sequence.
- inhibitor is used interchangeably with “knockdown,” “reduction,” “silencing,” “downregulate,” “suppression,” and other similar terms, and includes any degree of inhibition.
- complement component C3 is intended to refer to inhibiting the expression of any complement component C3 gene (such as, for example, a mouse complement component C3 gene, a rat complement component C3 gene, a monkey complement component C3 gene, or a human complement component C3 gene), as well as variants or mutants of complement component C3 genes.
- the complement component C3 gene can be a wild-type complement component C3 gene, a mutant complement component C3 gene, or a transgenic complement component C3 gene.
- “Inhibiting complement component C3 gene expression” includes inhibition of complement component C3 gene expression at any level, for example, at least partial inhibition of complement component C3 gene expression.
- Complement component C3 gene expression can be assessed based on the level or change in the level of any variable associated with complement component C3 gene expression, for example, complement component mRNA levels or complement component C3 protein levels, or indirectly reflects inhibition of C3 protein levels by inhibiting the mRNA levels of Gluc and C3 fusion protein genes, thereby inhibiting the level of Gluc protein.
- complement component C3 is primarily expressed in the liver, but is also expressed in the brain, gall bladder, heart, and kidneys, and is present in the circulation.
- Inhibition can be assessed by a decrease in the absolute or relative level of one or more variables associated with complement component C3 expression compared to a control level.
- the control level can be any type of control level used in the art, for example, a pre-dose baseline level, or a level determined from a similar subject that has not been treated or that has been treated with a control, such as, for example, a buffer-only control or an inactive agent control.
- salts refers to salts that retain the biological effectiveness and characteristics of free alkali or free acid, which are not biologically or otherwise undesirable. These salts are formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid (particularly hydrochloric acid) and organic acids such as acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methylsulfonic acid, ethylsulfonic acid, p-toluenesulfonic acid, salicylic acid, N-acetylcysteine.
- inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid (particularly hydrochloric acid)
- organic acids such as acetic acid
- salts derived from inorganic bases include but are not limited to alkali metal salts (such as sodium salts, potassium salts and lithium salts), ammonium salts, alkaline earth metal salts (such as calcium salts and magnesium salts).
- Salts derived from organic bases include, but are not limited to, salts formed with the following organic bases (e.g., organic amines): primary amines, secondary amines, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines, and basic ion exchange resins such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, ethanolamine, lysine, arginine, N-ethylpiperidine, piperidine, and polyamine resins.
- the oligonucleotides of the present disclosure may also exist in the form of zwitterions.
- Particularly preferred pharmaceutically acceptable salts of the present disclosure are sodium salts, lithium salts, potassium salts, and trialkylammonium salts.
- the term "subject” refers to an animal that expresses the target gene endogenously or heterologously, such as a mammal, including primates (such as humans, non-human primates, such as monkeys and chimpanzees), non-primates (such as cows, pigs, horses, goats, rabbits, sheep, hamsters, guinea pigs, cats, dogs, rats or mice) or birds.
- the subject is a human.
- treating refers to a beneficial or desired result, such as reducing at least one sign or symptom of a complement component C3-associated disorder in a subject.
- Treatment also includes reducing one or more signs or symptoms associated with undesirable complement component C3 expression; reducing the extent of undesirable complement component C3 activation or stabilization; ameliorating or alleviating undesirable complement component C3 activation or stabilization.
- Treatment also includes reducing one or more signs or symptoms associated with undesirable complement component C3 expression.
- Treatment can also mean prolonging survival compared to expected survival in the absence of treatment.
- prevention or “preventing” when used in reference to a disease or condition that would benefit from a reduction in complement component C3 gene expression or complement component C3 protein production.
- RNAi agent that, when administered to a subject suffering from a complement component C3-associated disorder, is sufficient to affect treatment of the disease (e.g., by reducing, ameliorating, or maintaining an existing disease or one or more disease symptoms).
- a “therapeutically effective amount” may vary depending on the RNAi agent, how the agent is administered, the disease and its severity, as well as medical history, age, weight, family history, genetic makeup, type of previous or concomitant treatment (if any), and other individual characteristics of the subject to be treated.
- the sense strand is 19 to 23 nucleotides in length.
- the oligonucleotide comprises a 5' and/or 3'-overhang sequence having a length of one or more nucleotides, wherein the 5' and/or 3'-overhang sequence is present on the antisense strand and/or the sense strand.
- the antisense strand of the oligonucleotide has 1 to 10 nucleotides at the 3' end or the 5' overhang at the end.
- the sense strand of the dsRNA has 1 to 10 nucleotides at the 3' end or the 5' overhang at the end.
- 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 nucleotides the one or more nucleotides in the overhang are replaced by nucleoside thiophosphates.
- the antisense strand has one or two overhangs.
- the sense strand has one or two overhangs.
- the oligonucleotide comprises a 3'-overhang sequence that is 1 or 2 nucleotides in length.
- the oligonucleotide comprises a 5'-overhang sequence that is 1 or 2 nucleotides in length.
- the 3'-overhang sequence is present on the antisense strand.
- the overhang sequence is selected from the group consisting of: AA, AC, AG, AU, CA, CC, CU, GA, GC, GG, GU, UA, UC, UG, UU.
- the oligonucleotide comprises an antisense strand and a sense strand each ranging from 19 to 23 nucleotides in length.
- the sense strand and the antisense strand form a duplex region.
- the sense strand and the antisense strand are respectively in a 19/21 paired, 21/21 paired, 21/23 paired or 23/23 paired duplex structure.
- the oligonucleotide comprises a 5' overhang of 1 nucleotide in length and a 3'-overhang sequence, wherein the 5' overhang and the 3'-overhang sequence are present on the antisense strand, and wherein the sense strand is 19 nucleotides in length and the antisense strand is 21 nucleotides in length, such that the sense strand and the antisense strand form a duplex of 19 nucleotides in length.
- the oligonucleotide comprises a 3'-overhang sequence that is 2 nucleotides in length, wherein the 3'-overhang sequence is present on the antisense strand, and wherein the sense strand is 19 nucleotides in length and the antisense strand is 21 nucleotides in length, such that the sense strand and the antisense strand form a duplex that is 19 nucleotides in length.
- the oligonucleotide comprises a 3'-overhang sequence that is 2 nucleotides in length, wherein the 3'-overhang sequence is present on the antisense strand and the sense strand, and wherein the sense strand is 21 nucleotides in length and the antisense strand is 21 nucleotides in length, such that the sense strand and the antisense strand form a duplex that is 19 nucleotides in length.
- the oligonucleotide comprises a 3'-overhang sequence that is 2 nucleotides in length, wherein the 3'-overhang sequence is present on the antisense strand, and wherein the sense strand is 21 nucleotides in length and the antisense strand is 23 nucleotides in length, such that the sense strand and the antisense strand form a duplex that is 21 nucleotides in length.
- the oligonucleotide comprises a 3'-overhang sequence that is 2 nucleotides in length, wherein the 3'-overhang sequence is present on the antisense strand and the sense strand, and wherein the sense strand is 23 nucleotides in length and the antisense strand is 23 nucleotides in length, such that the sense strand and the antisense strand form a duplex that is 21 nucleotides in length.
- the pharmaceutically acceptable salt of the oligonucleotide can be prepared by adding an inorganic base or an organic base to the free acid.
- Salts derived from inorganic bases include but are not limited to alkali metal salts (such as sodium salts, potassium salts and lithium salts), ammonium salts, alkaline earth metal salts (such as calcium salts and magnesium salts).
- Salts derived from organic bases include but are not limited to salts formed with the following organic bases: primary amines, secondary amines and tertiary amines, substituted amines include naturally occurring substituted amines, cyclic amines and basic ion exchange resins, such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, ethanolamine, lysine, arginine, N-ethylpiperidine, piperidine, polyamine resins.
- organic bases such as organic amines
- substituted amines include naturally occurring substituted amines
- cyclic amines and basic ion exchange resins such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, ethanolamine, lysine, arginine, N-ethylpiperidine, piperidine, polyamine resins.
- examples of pharmaceutically acceptable salts of oligonucleotides include, but are not limited to, ammonium salts, such as salts of tertiary alkylamine compounds (e.g., triethylamine salts), metal salts such as sodium salts, potassium salts, and magnesium salts.
- ammonium salts such as salts of tertiary alkylamine compounds (e.g., triethylamine salts)
- metal salts such as sodium salts, potassium salts, and magnesium salts.
- the 2'-modified nucleotides are selected from one or more of 2'-alkoxy modified nucleotides, 2'-substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-amino modified nucleotides, 2'-substituted amino modified nucleotides, 2'-fluoro modified nucleotides, and 2'-deoxy nucleotides.
- the antisense strand includes two phosphorothioate internucleotide bonds at the 5' end and two phosphorothioate internucleotide bonds at the 3' end, and the sense strand includes at least two phosphorothioate internucleotide bonds at the 5' end or the 3' end.
- the sense strand is selected from SEQ ID NO. 2, 5, 6, 15, 18, 20, 37, 41, 48, 67, 81, 91, 115, 117, 119, 125, 133, 163, 175, 183, 189, 208, 213, 215, 216, 217, 224, 225, 227, 229, 230, 235 , 237, 244, 247, 250, 251, 252, 253, 255, 256, 257, 264, 267, 271, 277, 278, 288, 289, 291, 302, 303, or a modified oligonucleotide of any one of SEQ ID NOs. 588-791; the antisense strand is selected from SEQ ID NO.
- the sense strand comprises the sequence shown in SEQ ID NO. 5, and the antisense strand comprises the sequence shown in SEQ ID NO. 310;
- the sense strand comprises the sequence shown in SEQ ID NO. 6, and the antisense strand comprises the sequence shown in SEQ ID NO. 311;
- the sense strand comprises the sequence shown in SEQ ID NO. 15, and the antisense strand comprises the sequence shown in SEQ ID NO. 320;
- the sense strand comprises the sequence shown in SEQ ID NO. 18, and the antisense strand comprises the sequence shown in SEQ ID NO. 323;
- the sense strand comprises the sequence shown in SEQ ID NO. 41, and the antisense strand comprises the sequence shown in SEQ ID NO. 346;
- the sense strand comprises the sequence shown in SEQ ID NO. 91, and the antisense strand comprises the sequence shown in SEQ ID NO. 396;
- the sense strand comprises the sequence shown in SEQ ID NO. 117, and the antisense strand comprises the sequence shown in SEQ ID NO. 422;
- the sense strand comprises the sequence shown in SEQ ID NO. 189, and the antisense strand comprises the sequence shown in SEQ ID NO. 494;
- the sense strand comprises the sequence shown in SEQ ID NO. 225, and the antisense strand comprises the sequence shown in SEQ ID NO. 530;
- the sense strand comprises the sequence shown in SEQ ID NO. 230, and the antisense strand comprises the sequence shown in SEQ ID NO. 535;
- the sense strand comprises the sequence shown in SEQ ID NO. 237, and the antisense strand comprises the sequence shown in SEQ ID NO. 542;
- the sense strand comprises the sequence shown in SEQ ID NO. 247, and the antisense strand comprises the sequence shown in SEQ ID NO. 552;
- the sense strand comprises the sequence shown in SEQ ID NO. 267, and the antisense strand comprises the sequence shown in SEQ ID NO. 572;
- the sense strand comprises the sequence shown in SEQ ID NO. 277, and the antisense strand comprises the sequence shown in SEQ ID NO. 573;
- the sense strand comprises the sequence shown in SEQ ID NO. 278, and the antisense strand comprises the sequence shown in SEQ ID NO. 574;
- the sense strand comprises the sequence shown in SEQ ID NO. 288, and the antisense strand comprises the sequence shown in SEQ ID NO. 575;
- the sense strand comprises the sequence shown in SEQ ID NO. 289, and the antisense strand comprises the sequence shown in SEQ ID NO. 576;
- the sense strand comprises the sequence shown in SEQ ID NO. 115, and the antisense strand comprises the sequence shown in SEQ ID NO. 420;
- the sense strand comprises the sequence shown in SEQ ID NO. 291, and the antisense strand comprises the sequence shown in SEQ ID NO. 578;
- the sense strand comprises the sequence shown in SEQ ID NO. 271, and the antisense strand comprises the sequence shown in SEQ ID NO. 579;
- the sense strand comprises the sequence shown in SEQ ID NO. 302, and the antisense strand comprises the sequence shown in SEQ ID NO. 584;
- the sense strand comprises the sequence shown in SEQ ID NO. 303, and the antisense strand comprises the sequence shown in SEQ ID NO. 585;
- the sense strand comprises the sequence shown in SEQ ID NO. 289, and the antisense strand comprises the sequence shown in SEQ ID NO. 582;
- the sense strand comprises the sequence shown in SEQ ID NO. 277, and the antisense strand comprises the sequence shown in SEQ ID NO. 580;
- the sense strand comprises the sequence shown in SEQ ID NO. 288, and the antisense strand comprises the sequence shown in SEQ ID NO. 581;
- the sense strand comprises the sequence shown in SEQ ID NO. 278, and the antisense strand comprises the sequence shown in SEQ ID NO. 1005;
- the sense strand comprises the sequence shown in SEQ ID NO. 278, and the antisense strand comprises the sequence shown in SEQ ID NO. 1009;
- each strand is independently 19 to 25 nucleotides in length.
- the oligonucleotide comprises any one selected from the following sense and antisense strand combinations:
- the sense strand comprises the sequence shown in SEQ ID NO. 2, and the antisense strand comprises the sequence shown in SEQ ID NO. 307;
- the sense strand comprises the sequence shown in SEQ ID NO. 18, and the antisense strand comprises the sequence shown in SEQ ID NO. 323;
- the sense strand comprises the sequence shown in SEQ ID NO. 48, and the antisense strand comprises the sequence shown in SEQ ID NO. 353;
- the sense strand comprises the sequence shown in SEQ ID NO. 115, and the antisense strand comprises the sequence shown in SEQ ID NO. 420;
- the sense strand comprises the sequence shown in SEQ ID NO. 117, and the antisense strand comprises the sequence shown in SEQ ID NO. 422;
- the sense strand comprises the sequence shown in SEQ ID NO. 278, and the antisense strand comprises the sequence shown in SEQ ID NO. 574;
- the sense strand comprises the sequence shown in SEQ ID NO. 271, and the antisense strand comprises the sequence shown in SEQ ID NO. 579;
- the sense strand comprises the sequence shown in SEQ ID NO. 302, and the antisense strand comprises the sequence shown in SEQ ID NO. 584;
- the sense strand comprises the sequence shown in SEQ ID NO. 289, and the antisense strand comprises the sequence shown in SEQ ID NO. 582;
- the sense strand comprises the sequence shown in SEQ ID NO. 271, and the antisense strand comprises the sequence shown in SEQ ID NO. 572;
- the sense strand comprises the sequence shown in SEQ ID NO. 289, and the antisense strand comprises the sequence shown in SEQ ID NO. 576;
- the positive strand comprises the sequence shown in SEQ ID NO.278, and the antisense strand comprises the sequence shown in SEQ ID NO.1009.
- the oligonucleotide comprises any one selected from the following sense and antisense strand combinations:
- the sense strand comprises the sequence shown in SEQ ID NO. 588, and the antisense strand comprises the sequence shown in SEQ ID NO. 793;
- the sense strand comprises the sequence shown in SEQ ID NO. 589, and the antisense strand comprises the sequence shown in SEQ ID NO. 794;
- the sense strand comprises the sequence shown in SEQ ID NO. 591, and the antisense strand comprises the sequence shown in SEQ ID NO. 796;
- the sense strand comprises the sequence shown in SEQ ID NO. 592, and the antisense strand comprises the sequence shown in SEQ ID NO. 797;
- the sense strand comprises the sequence shown in SEQ ID NO. 593, and the antisense strand comprises the sequence shown in SEQ ID NO. 798;
- the sense strand comprises the sequence shown in SEQ ID NO. 594, and the antisense strand comprises the sequence shown in SEQ ID NO. 799;
- the sense strand comprises the sequence shown in SEQ ID NO. 597, and the antisense strand comprises the sequence shown in SEQ ID NO. 802;
- the sense strand comprises the sequence shown in SEQ ID NO. 599, and the antisense strand comprises the sequence shown in SEQ ID NO. 804;
- the sense strand comprises the sequence shown in SEQ ID NO. 634, and the antisense strand comprises the sequence shown in SEQ ID NO. 839;
- the sense strand comprises the sequence shown in SEQ ID NO. 674, and the antisense strand comprises the sequence shown in SEQ ID NO. 879;
- the sense strand comprises the sequence shown in SEQ ID NO. 698, and the antisense strand comprises the sequence shown in SEQ ID NO. 903;
- the sense strand comprises the sequence shown in SEQ ID NO. 702, and the antisense strand comprises the sequence shown in SEQ ID NO. 907;
- the sense strand comprises the sequence shown in SEQ ID NO. 710, and the antisense strand comprises the sequence shown in SEQ ID NO. 915;
- the sense strand comprises the sequence shown in SEQ ID NO. 715, and the antisense strand comprises the sequence shown in SEQ ID NO. 920;
- the sense strand comprises the sequence shown in SEQ ID NO. 722, and the antisense strand comprises the sequence shown in SEQ ID NO. 927;
- the sense strand comprises the sequence shown in SEQ ID NO. 752, and the antisense strand comprises the sequence shown in SEQ ID NO. 957;
- the sense strand comprises the sequence shown in SEQ ID NO. 756, and the antisense strand comprises the sequence shown in SEQ ID NO. 957;
- the sense strand comprises the sequence shown in SEQ ID NO. 762, and the antisense strand comprises the sequence shown in SEQ ID NO. 958;
- the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 959;
- the sense strand comprises the sequence shown in SEQ ID NO. 773, and the antisense strand comprises the sequence shown in SEQ ID NO. 969;
- the sense strand comprises the sequence shown in SEQ ID NO. 774, and the antisense strand comprises the sequence shown in SEQ ID NO. 970;
- the sense strand comprises the sequence shown in SEQ ID NO. 776, and the antisense strand comprises the sequence shown in SEQ ID NO. 972;
- the sense strand comprises the sequence shown in SEQ ID NO. 776, and the antisense strand comprises the sequence shown in SEQ ID NO. 973;
- the sense strand comprises the sequence shown in SEQ ID NO. 595, and the antisense strand comprises the sequence shown in SEQ ID NO. 974;
- the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 979;
- the sense strand comprises the sequence shown in SEQ ID NO. 756, and the antisense strand comprises the sequence shown in SEQ ID NO. 987;
- the sense strand comprises the sequence shown in SEQ ID NO. 762, and the antisense strand comprises the sequence shown in SEQ ID NO. 989;
- the sense strand comprises the sequence shown in SEQ ID NO. 773, and the antisense strand comprises the sequence shown in SEQ ID NO. 991;
- the sense strand comprises the sequence shown in SEQ ID NO. 786, and the antisense strand comprises the sequence shown in SEQ ID NO. 993;
- the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 995;
- the sense strand comprises the sequence shown in SEQ ID NO. 752, and the antisense strand comprises the sequence shown in SEQ ID NO. 996;
- the sense strand comprises the sequence shown in SEQ ID NO. 788, and the antisense strand comprises the sequence shown in SEQ ID NO. 997;
- the sense strand comprises the sequence shown in SEQ ID NO. 789, and the antisense strand comprises the sequence shown in SEQ ID NO. 998;
- the sense strand comprises the sequence shown in SEQ ID NO. 786, and the antisense strand comprises the sequence shown in SEQ ID NO. 999;
- the sense strand comprises the sequence shown in SEQ ID NO. 756, and the antisense strand comprises the sequence shown in SEQ ID NO. 996;
- the sense strand comprises the sequence shown in SEQ ID NO. 773, and the antisense strand comprises the sequence shown in SEQ ID NO. 1001;
- the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 1013;
- the oligonucleotide comprises any one selected from the following sense and antisense strand combinations:
- the sense strand comprises the sequence shown in SEQ ID NO. 595, and the antisense strand comprises the sequence shown in SEQ ID NO. 800;
- the sense strand comprises the sequence shown in SEQ ID NO. 601, and the antisense strand comprises the sequence shown in SEQ ID NO. 806;
- the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 995;
- the sense strand comprises the sequence shown in SEQ ID NO. 752, and the antisense strand comprises the sequence shown in SEQ ID NO. 996;
- the sense strand comprises the sequence shown in SEQ ID NO. 789, and the antisense strand comprises the sequence shown in SEQ ID NO. 998;
- the sense strand comprises the sequence shown in SEQ ID NO. 786, and the antisense strand comprises the sequence shown in SEQ ID NO. 999;
- the positive strand comprises the sequence shown in SEQ ID NO.786, and the antisense strand comprises the sequence shown in SEQ ID NO.993.
- the sense strand comprises the sequence shown in SEQ ID NO. 788, and the antisense strand comprises the sequence shown in SEQ ID NO. 1017;
- the sense strand comprises the sequence shown in SEQ ID NO. 789, and the antisense strand comprises the sequence shown in SEQ ID NO. 1018;
- the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 1021;
- the conjugated group comprises at least one pharmaceutically acceptable targeting ligand and an optional linker, and the siRNA, linker and targeting ligand are connected in sequence.
- the targeting group can be a ligand conventionally used in the field of siRNA administration, such as the various ligands described in WO2009082607A2, the entire disclosure of which is incorporated herein by reference.
- the targeting ligand is 2-4.
- the siRNA molecule can be non-covalently or covalently conjugated to the conjugated group, for example, it can be covalently conjugated to the conjugated group.
- the targeting ligand comprises an asialoglycoprotein receptor ligand.
- the asialoglycoprotein receptor ligand comprises or consists of one or more galactose derivatives.
- galactose derivative includes galactose and lactose derivatives having an affinity for the asialoglycoprotein receptor equal to or greater than that of galactose.
- Galactose derivatives include, but are not limited to, galactose, galactosamine, N-formylgalactosamine, N-acetylgalactosamine, N-propionyl-galactosamine, N-n-butyryl-galactosamine, and N-isobutyrylgalactosamine.
- Galactose derivatives and clusters of galactose derivatives that can be used to target oligonucleotides and other molecules to the liver in vivo are known in the art.
- Galactose derivatives have been used to target molecules to hepatocytes in vivo by binding to the asialoglycoprotein receptor (ASGPR) expressed on the surface of hepatocytes.
- ASGPR asialoglycoprotein receptor
- the pharmaceutically acceptable targeting ligand in the siRNA conjugate can be galactose or N-acetylgalactosamine (GalNAc), wherein the galactose or N-acetylgalactosamine molecule can be monovalent, divalent, trivalent, or tetravalent.
- GalNAc N-acetylgalactosamine
- the targeting ligand comprises a carbohydrate, an amino sugar, cholesterol, a polypeptide, or a lipid.
- the targeting ligand comprises an N-acetylgalactosamine (GalNAc) moiety.
- the GalNac moiety is a monovalent GalNAc moiety, a divalent GalNAc moiety, a trivalent GalNAc moiety, or a tetravalent GalNAc moiety.
- the targeting ligand is L96;
- inhibition of in vivo expression is determined by knocking down human genes in rodents expressing human genes, for example, AAV-infected mice expressing human target genes (i.e., complement component C3), for example, when administered as a single dose, for example, at the lowest point of C3 expression after subcutaneous injection at 3 mg/kg to confirm the inhibitory effect on the human gene.
- rodents expressing human genes for example, AAV-infected mice expressing human target genes (i.e., complement component C3)
- human target genes i.e., complement component C3
- Such systems are useful when the nucleic acid sequences of the human gene and the model animal gene are close enough to allow human RNAi to effectively knock down the model animal gene.
- RNA expression in the liver is determined using the PCR method provided in Example 2.
- Inhibition of complement component C3 gene expression can be represented by a decrease in the amount of mRNA expressed by a cell line (such cells can be present, for example, in a sample derived from a subject) in which the complement component C3 gene is transcribed and which is treated (e.g., by contacting one or more cells with an RNAi of the disclosure, or by administering an RNAi of the disclosure to a subject in which cells are or were present) such that expression of the complement component C3 gene is inhibited compared to a substantially identical cell line but untreated (control cells not treated with RNAi or not treated with RNAi targeting the target gene).
- a cell line such cells can be present, for example, in a sample derived from a subject in which the complement component C3 gene is transcribed and which is treated (e.g., by contacting one or more cells with an RNAi of the disclosure, or by administering an RNAi of the disclosure to a subject in which cells are or were present) such that expression of the complement component C3
- inhibition of complement component C3 gene expression can be assessed based on a reduction in a parameter functionally associated with complement component C3 gene expression, e.g., complement component C3 protein levels in blood or serum from a subject.
- Complement component C3 gene silencing can be determined in any cell expressing complement component C3, whether endogenous or heterologous from an expression construct, and by any assay known in the art.
- Inhibition of complement component C3 protein expression can be demonstrated by a decrease in the level of complement component C3 protein or secreted luciferase expressed by a cell or cell population or in a subject sample (e.g., protein levels in a blood sample from a subject).
- a subject sample e.g., protein levels in a blood sample from a subject.
- inhibition of protein expression levels in treated cells or cell populations can be similarly expressed as a percentage of protein levels in control cells or cell populations, or as a change in protein levels in a subject sample (e.g., blood or serum thereof), inhibition is assessed by the methods provided in Example 3 or Example 4, using the following formula, expressed as a percentage of C3 expression or Gluc expression in the treated sample (e.g., blood or serum thereof) relative to C3 expression or Gluc expression in the control cells.
- Percentage of mRNA inhibition (protein expression level in treated cells - protein expression level in control cells ) / protein expression level in control cells * 100%
- Control cells, cell populations, or subject samples that can be used to assess inhibition of complement component C3 gene expression include cells, cell populations, or subject samples that have not been contacted with the RNAi agents of the present disclosure.
- control cells, cell lines, or subject samples can be derived from individual subjects (e.g., human or animal subjects) prior to treatment of the subject or an appropriately matched group control with an RNAi agent.
- Cells suitable for treatment using the methods of the present disclosure can be any cells that express the complement component C3 gene, for example, liver cells, brain cells, gallbladder cells, heart cells or kidney cells, but preferably liver cells.
- Cells suitable for use in the methods of the present disclosure can be mammalian cells, for example, primate cells (such as human cells, including human cells in chimeric non-human animals, or non-human primate cells, for example, monkey cells or chimpanzee cells) or non-primate cells.
- the cells are human cells, for example, human liver cells.
- the expression of complement component C3 in the cells is inhibited by at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90% or 95%, or is below the detection level of the assay.
- the in vivo method of the present disclosure can include administering to the subject a composition comprising RNAi, wherein the RNAi comprises a nucleotide sequence complementary to at least a portion of the RNA transcript of the complement component C3 gene of the mammal administered with the RNAi agent.
- the composition can be administered by any means known in the art, including but not limited to oral, intraperitoneal or parenteral routes, including intracranial (e.g., intraventricular, intraparenchymal and intrathecal), intravenous, intramuscular, subcutaneous, transdermal, airway (aerosol), nasal cavity, rectal and topical (including oral and sublingual) administration.
- the composition is administered by intravenous infusion or injection.
- the composition is administered by subcutaneous administration.
- the composition is administered by intramuscular injection.
- the present disclosure also provides a method for inhibiting the expression of complement component C3 gene in mammals.
- the method comprises administering an oligonucleotide or a pharmaceutically acceptable salt thereof, a conjugate thereof, a salt thereof, or a composition thereof to a mammal.
- the oligonucleotide is a double-stranded RNA (dsRNA) that targets the complement component C3 gene in mammalian cells and maintains the mammal for a sufficient time to obtain degradation of the mRNA transcript of the complement component C3 gene, thereby inhibiting the expression of the complement component C3 protein in the cell.
- dsRNA double-stranded RNA
- autoimmune hemolytic anemia Approximately half of cases of warm autoimmune hemolytic anemia are primary because no specific cause can be found, while the remainder are thought to be secondary to lymphoproliferative syndromes; malignant disorders, including chronic lymphocytic leukemia (CLL), non-Hodgkin's lymphoma, and solid tumors; rheumatic diseases, particularly systemic lupus erythematosus; infections (primarily viral); drugs; frequent use of cephalosporins and piperacillin; or previous transfusion or transplantation (see, e.g., Berentsen (2015) Transfus Med Hemother 42:303-310).
- CLL chronic lymphocytic leukemia
- non-Hodgkin's lymphoma non-Hodgkin's lymphoma
- solid tumors solid tumors
- rheumatic diseases particularly systemic lupus erythematosus
- infections primarily viral
- drugs frequent use of cephalosporins and piperacillin; or
- the complement component C3-associated disease is paroxysmal nocturnal hemoglobinuria (PNH).
- PNH can be classic PNH or PNH in the context of another bone marrow failure syndrome and/or myelodysplastic syndrome (MDS), e.g., cytopenias.
- MDS myelodysplastic syndrome
- PNH is an acquired autoimmune disease that can lead to premature death and impaired hematopoiesis and is characterized by complement-mediated hemolytic anemia, thrombophilia, and bone marrow failure (see, e.g., Risitano (2013) Adv Exp Med Biol 735:155).
- the complement component C3-associated disease is bullous pemphigoid.
- Bullous pemphigoid is an autoimmune blistering disease caused by autoantibodies against type XVII collagen (COL17), which activates complement and subsequently recruits inflammatory cells at the dermal/epidermal junction.
- Bullous pemphigoid is the most common autoimmune blistering disorder and is characterized by tight blisters accompanied by itchy urticarial erythema and plaques throughout the body.
- the complement component C3-associated disease is C3 glomerulopathy.
- C3 glomerulopathy is characterized by activation of the alternative complement cascade and deposition of complement component C3 without any immunoglobulin deposition in the glomeruli of the kidney.
- RNAi disclosed herein can be administered as "free RNAi".
- Free RNAi is administered without a pharmaceutical composition.
- Naked RNAi can be in a suitable buffer solution.
- the buffer solution can contain acetate, citrate, lactate, tartrate, carbonate or phosphate, or any combination thereof.
- the buffer solution is phosphate buffered saline (PBS).
- PBS phosphate buffered saline
- the pH and osmotic pressure of the buffer solution containing RNAi can be adjusted to make it suitable for administration to a subject.
- RNAi is administered at a fixed dose of about 10 mg to about 800 mg. In some embodiments, RNAi is administered to a subject at a fixed dose of about 10 to 50 mg, about 50 mg to about 200 mg, about 200 mg to about 400 mg, or about 400 mg to about 800 mg. In some embodiments, RNAi is administered to a subject at a fixed dose of about 10 mg, about 50 mg, about 100 mg, about 200 mg, about 300 mg, about 400 mg, 500 mg, about 600 mg, about 700 mg, or about 800 mg.
- RNAi is administered from about once a month to about once every three months, or from about once every three months to about once every six months, or even once a year.
- RNAi agents or pharmaceutical compositions thereof with other drugs and/or other treatments (e.g., known drugs and/or known treatments, such as, for example, those currently used to treat these conditions) for the treatment of subjects who would benefit from the reduction and/or inhibition of C3 gene expression, e.g., subjects with a C3-related disease.
- other drugs and/or other treatments e.g., known drugs and/or known treatments, such as, for example, those currently used to treat these conditions
- C3 expression e.g., subjects with a complement component C3-related disease
- thrombolytic therapy e.g., streptokinase
- antiplatelet drugs folic acid, corticosteroids
- immunosuppressants antithrombotic agents
- complement inhibitors e.g., adrenergic drugs
- drugs that interfere with proinflammatory cytokine signaling e.g., TNF- ⁇ or IL-1) (e.g., IRAK, NIK, IKK, p38 or MAP kinase inhibitors); C3 cyclic peptide inhibitors
- other therapeutic agents also include anti-complement component C5 antibodies or antigen-binding fragments thereof (e.g., eculizumab).
- reagent can be obtained from any molecular biology reagent supplier at quality/purity standards appropriate for molecular biology.
- nucleotide monomers used in nucleic acid sequence representation.
- a computer-based algorithm was used to generate candidate oligonucleotide sequences complementary to human C3 mRNA (NM_000064.3, Table 1). Some of these sequences were also complementary to or had no more than two mismatches with cynomolgus macaque C3 mRNA (XM_005587719.3, Table 1). Some of these sequences were designed as double-stranded siRNAs with a 19/21 sense/antisense pairing, with the antisense strand having two overhangs complementary to the mRNA sequence; in some cases, the antisense strand had non-complementary UU overhangs.
- sequences were designed as double-stranded siRNAs with a 21/23 sense/antisense pairing, with the antisense strand having two overhangs complementary to the mRNA sequence.
- Other sequences were designed as double-stranded siRNAs with 21/21 or 23/23 pairings. In some of these complementary pairs, the first base at the 5' end of the antisense strand (the last base at the 3' end of the sense strand) was replaced with a base that did not match the C3 mRNA.
- siRNA sequence is synthesized separately on a solid support via the sense strand (SS) and antisense strand (AS), and is obtained after deprotection, cleavage, purification, annealing, purification, and freeze-drying.
- Solid-phase synthesis ( Figure 2): Sense and antisense strands are synthesized separately on a solid support using phosphoramidite technology using an automated oligonucleotide synthesizer. Examples of such synthesizers include the AKTA Oligopilot (Cytiva) and the Dr. Oligo 192XLc (Kunshan Berleke Precision Instrument Co., Ltd.). Solid-phase synthesis begins at the 3' end of the sequence and couples monomers sequentially into the sequence. Each coupling of a phosphoramidite monomer involves four chemical steps: 1) unblocking or deprotection (removal of the hydroxyl protecting group); 2) coupling; 3) oxidation; and 4) capping.
- phosphoramidite monomers, reagents, and purification consumables used were commercially available, including various phosphoramidite monomers (e.g., 5'-O-(4,4'-Dimethoxytrityl)-2'-O-methyl-Uridine-3'-CE-Phosphoramidite) purchased from Shanghai Zhaowei Technology Development Co., Ltd., and reaction reagents (e.g., 40 wt% aqueous methylamine solution, 28 wt% aqueous ammonium hydroxide solution) purchased from Sigma-Aldrich LLC.
- various phosphoramidite monomers e.g., 5'-O-(4,4'-Dimethoxytrityl)-2'-O-methyl-Uridine-3'-CE-Phosphoramidite
- reaction reagents e.g., 40 wt% aqueous methylamine solution, 28 wt% aqueous ammonium hydroxide solution
- siRNA synthesis and purification methods used in this article are described in US20130178612A1 and US2015100197A1, among others; the synthesis methods for sequences containing VPUm and APU structures are described in J. Med. Chem. 2018, 61, 734-744.
- the synthesis of the antisense chain is similar to that of the sense chain.
- Different raw materials, reagents and solvents are injected into different pipelines in the order of 3' to 5' of the sequence through a solid phase synthesizer to connect the phosphoramidite nucleoside monomers one by one.
- the reaction process includes four cycles of DMT protection group removal reaction, condensation reaction, oxidation or thiolation reaction, and end-capping reaction. Each cycle connects one nucleotide unit to obtain an oligonucleotide sequence of 21 or 23 nucleotide units.
- the protecting group (2-cyanoethyl) is removed on the solid phase synthesis column, and then the synthesized sequence is cut from the solid phase support by aminolysis reaction, filtered, and the filter cake is washed with ethanol. The filtrate and washing liquid are collected and concentrated to obtain the crude antisense chain.
- the crude product is purified by chromatography (SOURCE 15Q), ultrafiltered, and freeze-dried to obtain the target product antisense chain siRNA.
- the double-stranded siRNA agents shown in Tables 2, 3 and 4 below were prepared.
- G,” “C,” “A,” “U,” “T,” and “I” generally represent nucleotides based on guanine, cytosine, adenine, uracil, thymine, and hypoxanthine, respectively.
- the naked sequences in Tables 2, 3, and 4 refer to unmodified oligonucleotide sequences.
- Human hepatocellular carcinoma cells (undifferentiated) (also known as HLE cells) (Wuhan Punosai Life Science Technology Co., Ltd., catalog number CL-0651) and Hep3B cells (Wuhan Punosai Life Science Technology Co., Ltd., catalog number CL-0102) were taken and placed in an incubator at 37°C and 5% CO2 . They were cultured using DMEM medium (Sybio (Shanghai) Biotechnology Co., Ltd., catalog number iCell-0001) supplemented with 10% FBS (GIBCO, 12483020) and 1% penicillin-streptomycin (GIBCO, 15140-122).
- RNAiMAX LipofectamineTM RNAiMAX (thermofisher, 13778150) was used for transfection. 2.2 ⁇ l (2 ⁇ M) diluted compound, 19.1 ⁇ l Opti-MEM (thermofisher, 1105821), and 0.7 ⁇ l RNAiMAX were mixed to form a transfection complex. After incubation for 5 minutes, the transfection complex was added to the cells (two technical replicates for each complex), 10 ⁇ l per well, and the final concentration of siRNA was 10 nM. The cells were cultured in a 37°C, 5% CO2 incubator for 24 hours.
- RNA-Quick Purification Kit (RN001, Yishan Biotechnology):
- the data were exported to EXCEL format and normalized to the control group using CT C3 -CT GAPDH .
- CT C3 -CT GAPDH CT C3 -CT GAPDH .
- the data were analyzed using the ⁇ CT method, and the mean and standard deviation of the three replicates were calculated.
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Abstract
Description
本公开涉及一种寡核苷酸,特别是针对补体C3基因表达的抑制和补体表达异常相关疾病治疗的寡核苷酸。The present disclosure relates to an oligonucleotide, in particular to an oligonucleotide for inhibiting the expression of complement C3 gene and treating diseases associated with abnormal complement expression.
补体系统是免疫系统最古老的分支之一,在一百多年前就已经被发现。之所以称为补体,是因为人们发现身体中除了抗体以外,还有一些蛋白对免疫系统有补充作用。The complement system is one of the oldest branches of the immune system, discovered over a century ago. It is called complement because people discovered that in addition to antibodies, there are other proteins in the body that have a supplementary effect on the immune system.
补体是一种血清蛋白质,主要介导免疫应答和炎症反应,能够被抗原-抗体复合物或微生物所激活,进而导致病原微生物裂解或被吞噬。补体系统不仅是机体发挥天然免疫防御的重要效应机制,同时也是主要的体液免疫效应机制之一。当参与防卫时,会迅速产生大量的补体前体蛋白来响应和检测威胁,对消除外来抗原的侵害,对维护机体内环境的平衡具有重要作用。虽然补体激活属宿主的免疫防御反应,但异常过度激活时可造成组织器官损伤,引起PNH(阵发性睡眠性血红蛋白尿症)、非典型溶血性尿毒症综合征(aHUS)、C3肾小球病、老年黄斑变性(AMD)等多种疾病。所以靶向补体类药物具有广阔的市场前景。Complement is a serum protein that primarily mediates immune and inflammatory responses. It can be activated by antigen-antibody complexes or microorganisms, leading to the lysis or phagocytosis of pathogenic microorganisms. The complement system is not only an important effector mechanism for the body's natural immune defense, but also one of the main humoral immune effector mechanisms. When involved in defense, a large amount of complement precursor proteins are rapidly produced to respond to and detect threats, playing an important role in eliminating the invasion of foreign antigens and maintaining the balance of the body's internal environment. Although complement activation is an immune defense response of the host, abnormal overactivation can cause tissue and organ damage, leading to a variety of diseases such as PNH (paroxysmal nocturnal hemoglobinuria), atypical hemolytic uremic syndrome (aHUS), C3 glomerulopathy, and age-related macular degeneration (AMD). Therefore, targeted complement drugs have broad market prospects.
补体系统的整个活化过程表现为一系列丝氨酸蛋白酶的级联酶解反应,最终形成膜攻击复合物导致靶细胞损伤。补体系统的活化主要通过经典途径(Classical pathway),旁路途径(Alternative pathway)和凝集素途径(Lectin pathway)3条既相对独立又相互联系的途径实现(图1),三条途径产生的C5转化酶,均可裂解C5,引发共同终末效应,进而发挥调理吞噬、裂解细胞、介导炎症、免疫调节和清除免疫复合物等多种生物学效应。目前靶向三条路径相关靶点的药物开发均已经成功转化。鉴于一些罕见病补体相关的发病机制明确和特异,目前罕见病病人从中获益最为显著。The entire activation process of the complement system is manifested as a cascade of enzymatic reactions of a series of serine proteases, ultimately forming a membrane attack complex that causes target cell damage. The activation of the complement system is mainly achieved through three relatively independent yet interconnected pathways: the classical pathway, the alternative pathway, and the lectin pathway (Figure 1). The C5 convertases produced by the three pathways can all cleave C5, triggering a common terminal effect, and then exerting a variety of biological effects such as regulating phagocytosis, lysing cells, mediating inflammation, immunomodulation, and clearing immune complexes. At present, the development of drugs targeting targets related to the three pathways has been successfully transformed. Given that the complement-related pathogenesis of some rare diseases is clear and specific, patients with rare diseases currently benefit the most from it.
补体C3是血清中含量最高的补体成分,位于C5的上游,是补体多种活化途径末端效应分子。补体C3在C3转化酶的作用下,可裂解成C3a和C3b,在补体经典激活途径和旁路激活途径中发挥重要作用。Complement C3 is the most abundant complement component in serum, located upstream of C5. It is the terminal effector molecule in multiple complement activation pathways. Complement C3 is cleaved into C3a and C3b by C3 convertase, playing a crucial role in both the classical and alternative complement activation pathways.
补体C5是补体系统中膜攻击复合物(MAC)的代表性分子,是在靶向补体的药物研发中的热门靶标。C5抑制剂是最早获批应用的补体药物。2007年3月,FDA批准了Alexion公司的补体C5单抗Eculizumab(Soliris)上市,用于治疗阵发性睡眠性血红蛋白尿症(PNH)。Complement C5, a representative member of the membrane attack complex (MAC) in the complement system, is a popular target in complement-targeted drug development. C5 inhibitors are among the earliest approved complement drugs. In March 2007, the FDA approved Alexion's C5-targeting monoclonal antibody, eculizumab (Soliris), for the treatment of paroxysmal nocturnal hemoglobinuria (PNH).
Soliris是全球第一个C5补体抑制剂,通过每两周一次注射Eculizumab。Soliris也是PNH患者首款特异性用药。此后,Soliris还获批了非典型溶血性尿毒症综合征(aHUS),全身性重症肌无力(gMG)以及成人视神经脊髓炎等适应症。Soliris is the world's first C5 complement inhibitor, administered via biweekly injection of eculizumab. It is also the first specific treatment for patients with paroxysmal nocturnal hemorrhage (PNH). Since then, Soliris has also been approved for atypical hemolytic uremic syndrome (aHUS), generalized myasthenia gravis (gMG), and neuromyelitis optica in adults.
Apellis制药公司开发了一种补体C3抑制剂pegcetacoplan(APL-2)。pegcetacoplan是一种合成的环肽,与一种聚乙二醇聚合物结合,并特异性地与C3和C3b结合。目前正被开发用于治疗PNH、地图样萎缩(GA)和C3肾小球病等多种疾病。Apellis Pharmaceuticals has developed a complement C3 inhibitor, pegcetacoplan (APL-2). Pegcetacoplan is a synthetic cyclic peptide conjugated to a polyethylene glycol polymer that specifically binds to C3 and C3b. It is currently being developed for the treatment of various diseases, including paroxysmal nocturnal hemoglobinuria (PNH), geographic atrophy (GA), and C3 glomerulopathy.
补体系统的不适当激活是很多不同疾病传播和/或引发病理过程的原因,包括,例如,阵发性睡眠性血红蛋白尿(PNH)、非典型溶血性尿毒症综合征(aHUS)、视神经脊髓炎(NMO)、多灶性运动神经病(MMN)、重症肌无力(MG)、C3肾小球肾炎、系统性红斑狼疮、类风湿性关节炎、缺血再灌注损伤和神经退行性疾病。可用于治疗补体成分C3相关疾病的疗法有限,这些疾病需要耗时和侵入性的施用,且成本高昂。因此,本领域需要用于患有补体成分C3相关疾病的受试者的替代疗法和联合疗法。Inappropriate activation of the complement system is responsible for the propagation and/or initiation of pathological processes in many different diseases, including, for example, paroxysmal nocturnal hemoglobinuria (PNH), atypical hemolytic uremic syndrome (aHUS), neuromyelitis optica (NMO), multifocal motor neuropathy (MMN), myasthenia gravis (MG), C3 glomerulonephritis, systemic lupus erythematosus, rheumatoid arthritis, ischemia-reperfusion injury, and neurodegenerative diseases. There are limited therapies available for treating diseases associated with complement component C3, which require time-consuming and invasive administration and are costly. Therefore, there is a need in the art for alternative therapies and combination therapies for subjects with diseases associated with complement component C3.
本公开的目的在于提供疗效好、安全性高、药效持久的抑制补体成分C3表达的抑制剂。The purpose of the present disclosure is to provide an inhibitor for inhibiting the expression of complement component C3 with good efficacy, high safety and long-lasting efficacy.
本公开提供了寡核苷酸或其药学上可接受的盐和使用该寡核苷酸或其药学上可接受的盐抑制细胞或哺乳动物中补体成分C3基因表达的方法,其中该寡核苷酸靶向补体成分C3基因。本文还提供了用于治疗由补体成分C3基因表达引起的哺乳动物中的病理状况和疾病的组合物和方法。该寡核苷酸为双链RNA(dsRNA),通过称为RNA干扰(RNAi)的过程指导mRNA的序列特异性降解。The present disclosure provides oligonucleotides or pharmaceutically acceptable salts thereof and methods of using the oligonucleotides or pharmaceutically acceptable salts thereof to inhibit the expression of complement component C3 gene in cells or mammals, wherein the oligonucleotide targets the complement component C3 gene. Also provided herein are compositions and methods for treating pathological conditions and diseases in mammals caused by the expression of complement component C3 gene. The oligonucleotide is a double-stranded RNA (dsRNA) that directs the sequence-specific degradation of mRNA through a process known as RNA interference (RNAi).
在一方面,本公开提供了用于抑制补体成分C3基因表达的寡核苷酸或其药学上可接受的盐,前述寡核苷酸包含正义链和反义链,前述正义链具有与SEQ ID NO.SEQ ID NO.1-49和51-305中任一所示的序列或其片段、或前述序列或其片段的修饰序列至少80%以上的序列同一性的序列,优选具有85%、90%、95%、96%、97%、98%、99%以上的序列同一性的序列;前述反义链具有与SEQ ID NO.306-586、588-586和1002-1009中任一所示的序列或其片段、或前述序列或其片段的修饰序列至少80%以上的序列同一性的序列,优选具有85%、90%、95%、96%、97%、98%、99%以上的序列同一性的序列。In one aspect, the present disclosure provides an oligonucleotide or a pharmaceutically acceptable salt thereof for inhibiting the expression of the complement component C3 gene, wherein the oligonucleotide comprises a sense chain and an antisense chain, wherein the sense chain has a sequence having at least 80% sequence identity with a sequence shown in any one of SEQ ID NO. SEQ ID NO. 1-49 and 51-305 or a fragment thereof, or a modified sequence of the aforementioned sequence or its fragment, and preferably has a sequence identity of 85%, 90%, 95%, 96%, 97%, 98%, or 99% or more; and the antisense chain has a sequence having at least 80% sequence identity with a sequence shown in any one of SEQ ID NO. 306-586, 588-586 and 1002-1009 or a fragment thereof, or a modified sequence of the aforementioned sequence or its fragment, and preferably has a sequence identity of 85%, 90%, 95%, 96%, 97%, 98%, or 99% or more.
在另一方面,本公开提供了一种用于抑制补体成分C3表达的缀合物或其药学上可接受的盐,其包括:(i)寡核苷酸或其药学上可接受的盐,及(ii)与寡核苷酸或其药学上可接受的盐缀合的配体,其中,寡核苷酸的至少一个核苷酸缀合至一个靶向配体。In another aspect, the present disclosure provides a conjugate for inhibiting the expression of complement component C3 or a pharmaceutically acceptable salt thereof, comprising: (i) an oligonucleotide or a pharmaceutically acceptable salt thereof, and (ii) a ligand conjugated to the oligonucleotide or a pharmaceutically acceptable salt thereof, wherein at least one nucleotide of the oligonucleotide is conjugated to a targeting ligand.
在另一方面,本公开提供了一种组合物,其包含前述寡核苷酸或其药学上可接受的盐,或前述缀合物或其药学上可接受的盐,以及任选地药学上可接受的载体。In another aspect, the present disclosure provides a composition comprising the aforementioned oligonucleotide or a pharmaceutically acceptable salt thereof, or the aforementioned conjugate or a pharmaceutically acceptable salt thereof, and optionally a pharmaceutically acceptable carrier.
在另一方面,本公开提供了前述的寡核苷酸或其药学上可接受的盐、缀合物或其药学上可接受的盐或组合物在制备用于治疗或/和预防补体成分C3相关病症的药物中的用途。In another aspect, the present disclosure provides use of the aforementioned oligonucleotide or a pharmaceutically acceptable salt, conjugate or a pharmaceutically acceptable salt or composition thereof in the preparation of a medicament for treating and/or preventing a complement component C3-related disorder.
在另一方面,本公开提供了一种用于通过向受试者施用治疗剂(例如,前述寡核苷酸或其药学上可接受的盐,或前述缀合物或其药学上可接受的盐,或前述组合物,或编码寡核苷酸的载体或转基因)治疗和/或预防受试者中的补体成分C3相关病症、病症和/或病状的方法。In another aspect, the present disclosure provides a method for treating and/or preventing complement component C3-associated disorders, disorders and/or conditions in a subject by administering a therapeutic agent (e.g., the aforementioned oligonucleotide or a pharmaceutically acceptable salt thereof, or the aforementioned conjugate or a pharmaceutically acceptable salt thereof, or the aforementioned composition, or a vector or transgene encoding the oligonucleotide) to the subject.
在另一方面,本公开提供了前述寡核苷酸或其药学上可接受的盐或、缀合物或其药学上可接受的盐、或组合物与其他药物和/或其他治疗方法联合治疗和/或预防受试者中的补体C3相关病症、病症和/或病状的方法。In another aspect, the present disclosure provides methods for treating and/or preventing complement C3-associated disorders, disorders and/or conditions in a subject using the aforementioned oligonucleotides or pharmaceutically acceptable salts thereof, conjugates or pharmaceutically acceptable salts thereof, or compositions in combination with other drugs and/or other therapeutic methods.
实验证明,本公开的寡核苷酸可以有效的降低体内的补体成分C3含量,是补体成分C3的有效抑制剂。Experiments have shown that the oligonucleotide disclosed herein can effectively reduce the level of complement component C3 in the body and is an effective inhibitor of complement component C3.
图1示处了补体激活路径。Figure 1 shows the complement activation pathway.
图2示出了siRNA固相合成流程图。FIG2 shows a flow chart of siRNA solid phase synthesis.
图3示出了RA177 pFB-AAV-CAG-Gluc-2A-HsC3_P1酶切图谱。Figure 3 shows the enzyme cleavage map of RA177 pFB-AAV-CAG-Gluc-2A-HsC3_P1.
图4示出了RA178 pFB-AAV-CAG-Gluc-2A-HsC3_P2酶切图谱。Figure 4 shows the enzyme cleavage map of RA178 pFB-AAV-CAG-Gluc-2A-HsC3_P2.
图5示出了hC3 siRNA的体内药效(AAV hC3转基因小鼠)。Figure 5 shows the in vivo efficacy of hC3 siRNA (AAV hC3 transgenic mice).
图6示出了hC3 siRNA的体内药效(hC3转基因小鼠)。Figure 6 shows the in vivo efficacy of hC3 siRNA (hC3 transgenic mice).
在本公开中,除非另有说明,否则本文中使用的科学和技术名词具有本领域技术人员所通常理解的含义。并且,本文中所用的蛋白质和核酸化学、分子生物学、细胞和组织培养、微生物学、免疫学相关术语和实验室操作步骤均为相应领域内广泛使用的术语和常规步骤。同时,为了更好地理解本公开,下面提供相关术语的定义和解释。In this disclosure, unless otherwise indicated, scientific and technical terms used herein have the meanings commonly understood by those skilled in the art. Furthermore, terms and laboratory procedures related to protein and nucleic acid chemistry, molecular biology, cell and tissue culture, microbiology, and immunology used herein are those widely used in the respective fields and are common procedures. To facilitate a better understanding of this disclosure, definitions and explanations of relevant terms are provided below.
如本文所用,如应用于一种或多种目标值的术语“约”或“近似”是指与参考值类似的值。在某些实施方案中,除非另有说明或另外从上下文显而易见,否则术语“近似”或“约”是指落入所述参考值在任一方向(大于或小于)的20%、19%、18%、17%、16%、15%、14%、13%、12%、11%、10%、9%、8%、7%、6%、5%、4%、3%、2%、1%或更少内的值的范围(除非这种数字将超过可能值的100%)。As used herein, the term "approximately" or "approximately" as applied to one or more target values refers to a value similar to a reference value. In certain embodiments, unless otherwise indicated or in addition apparent from context, the term "approximately" or "approximately" refers to a value falling within 20%, 19%, 18%, 17%, 16%, 15%, 14%, 13%, 12%, 11%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1% or less of the reference value in either direction (greater than or less than) or less (unless such numerals will exceed 100% of possible values).
本文描述了补体成分C3的RNAi剂以用于选择性且有效地抑制补体成分C3基因的表达。本文所述的补体成分C3的RNAi剂可用于预防或治疗以下疾病或者制备预防或治疗以下疾病所用的药物,所述疾病包括但不限于:冷凝集素病(CAD),温性自身免疫性溶血性贫血,和阵发性夜间血红蛋白尿(PNH),狼疮肾炎(LN),大疱性类天疱疮,天疱疮,例如寻常型天疱疮(PV)和叶型天疱疮(PF),或C3肾小球病。The RNAi agents of complement component C3 are described herein for selectively and effectively inhibiting the expression of complement component C3 gene. The RNAi agents of complement component C3 described herein can be used to prevent or treat the following diseases or to prepare medicaments for preventing or treating the following diseases, including but not limited to: cold agglutinin disease (CAD), warm autoimmune hemolytic anemia, and paroxysmal nocturnal hemoglobinuria (PNH), lupus nephritis (LN), bullous pemphigoid, pemphigus, such as pemphigus vulgaris (PV) and pemphigus foliaceus (PF), or C3 glomerulopathy.
如本文所用,“靶序列”是指在补体成分C3基因的转录过程中形成的mRNA分子的核苷酸序列的连续部分,包括作为初级转录产物的RNA加工产物的mRNA。As used herein, "target sequence" refers to a contiguous portion of the nucleotide sequence of an mRNA molecule formed during transcription of a complement component C3 gene, including mRNA that is a product of RNA processing of the primary transcript.
如本文所用,术语“互补”是指核苷酸(例如,在相对的核酸上或在单一核酸链的相对区域上的两个核苷酸上)之间允许核苷酸彼此形成碱基对的结构关系。例如,一个核酸的与相对核酸的嘧啶核苷酸互补的嘌呤核苷酸可以通过彼此形成氢键而碱基配对在一起。在一些实施方案中,互补的核苷酸可以以沃森-克里克(Watson-Crick)方式或以允许形成稳定双链体的任何其他方式碱基配对。在一些实施方案中,两个核酸可以具有与彼此互补以便形成互补区域的核苷酸序列,如本文所述。As used herein, term " complementary " refers to the structural relationship that allows nucleotide to form base pairs with each other between nucleotide (for example, on relative nucleic acid or on two nucleotides on the relative region of single nucleic acid chain).For example, the purine nucleotides complementary to the pyrimidine nucleotides of a nucleic acid can be base paired together by forming hydrogen bonds with each other.In some embodiments, complementary nucleotides can be base paired in Watson-Crick (Watson-Crick) mode or in any other manner that allows to form a stable duplex.In some embodiments, two nucleic acids can have and be complementary to each other to form the nucleotide sequence of complementary region, as described herein.
如本文所用,术语“链”是指通过核苷酸间键(例如,磷酸二酯键、硫代磷酸酯键)连接在一起的核苷酸的单一连续序列。在一些实施方案中,链具有两个游离末端,例如5'-末端和3'-末端。As used herein, the term "strand" refers to a single continuous sequence of nucleotides linked together by internucleotide bonds (e.g., phosphodiester bonds, phosphorothioate bonds). In some embodiments, the strand has two free ends, e.g., a 5'-end and a 3'-end.
如本文所用,术语“脱氧核糖核苷酸”是指与核糖核苷酸相比在其戊糖的2'位置处具有氢的核苷酸。修饰的脱氧核糖核苷酸是除了在2'位置以外具有一个或多个原子的修饰或取代(包括糖、磷酸酯基团或碱基中的修饰或取代或糖、磷酸酯基团或碱基的修饰或取代)的脱氧核糖核苷酸。As used herein, the term "deoxyribonucleotide" refers to a nucleotide that has a hydrogen at the 2' position of its pentose sugar compared to a ribonucleotide. A modified deoxyribonucleotide is a deoxyribonucleotide that has a modification or substitution of one or more atoms other than the 2' position, including a modification or substitution in or of a sugar, a phosphate group, or a base.
如本文所用,术语“寡核苷酸”是指短核酸,例如长度小于100个核苷酸的短核酸。寡核苷酸可以包含核糖核苷酸、脱氧核糖核苷酸和/或修饰的核苷酸,包括例如修饰的核糖核苷酸。寡核苷酸可以是单链或双链的。寡核苷酸可以具有或可以不具有双链体区域。作为一组非限制性实例,寡核苷酸可以是,但不限于,小干扰RNA(siRNA)、微RNA(miRNA)、短发夹RNA(shRNA)、Dicer底物干扰RNA(dsiRNA)、反义寡核苷酸、短siRNA或单链siRNA。在一些实施方案中,双链寡核苷酸是RNAi寡核苷酸。As used herein, the term "oligonucleotide" refers to a short nucleic acid, for example, a short nucleic acid less than 100 nucleotides in length. The oligonucleotide can comprise ribonucleotides, deoxyribonucleotides and/or modified nucleotides, including, for example, modified ribonucleotides. The oligonucleotide can be single-stranded or double-stranded. The oligonucleotide may or may not have a duplex region. As one group of non-limiting examples, the oligonucleotide can be, but is not limited to, small interfering RNA (siRNA), microRNA (miRNA), short hairpin RNA (shRNA), Dicer substrate interfering RNA (dsiRNA), antisense oligonucleotide, short siRNA or single-stranded siRNA. In some embodiments, the double-stranded oligonucleotide is an RNAi oligonucleotide.
如本文所用,术语“双链寡核苷酸”是指基本上呈双链体形式的寡核苷酸。在一些实施方案中,在共价分离的核酸链的核苷酸的反向平行序列之间形成双链寡核苷酸的一个或多个双链体区域的互补碱基配对。在一些实施方案中,在共价连接的核酸链的核苷酸的反向平行序列之间形成双链寡核苷酸的一个或多个双链体区域的互补碱基配对。在一些实施方案中,从单一核酸链形成双链寡核苷酸的一个或多个双链体区域的互补碱基配对,所述单一核酸链被折叠(例如,经由发夹),以提供在一起碱基配对的核苷酸的互补的反向平行序列。在一些实施方案中,双链寡核苷酸包含彼此完全双链体化的两条共价分离的核酸链。然而,在一些实施方案中,双链寡核苷酸包含部分双链体化、例如在一个或两个末端具有突出端的两条共价分离的核酸链。在一些实施方案中,双链寡核苷酸包含核苷酸的反向平行序列,其部分互补,且因此,可以具有一个或多个错配,所述错配可以包括内部错配或末端错配。As used herein, the term "double-stranded oligonucleotide" refers to an oligonucleotide that is substantially in duplex form. In some embodiments, the complementary base pairing of one or more duplex regions of a double-stranded oligonucleotide is formed between the antiparallel sequence of the nucleotides of the covalently separated nucleic acid chains. In some embodiments, the complementary base pairing of one or more duplex regions of a double-stranded oligonucleotide is formed between the antiparallel sequence of the nucleotides of the covalently attached nucleic acid chains. In some embodiments, the complementary base pairing of one or more duplex regions of a double-stranded oligonucleotide is formed from a single nucleic acid chain, and the single nucleic acid chain is folded (for example, via a hairpin) to provide the complementary antiparallel sequence of the nucleotides of base pairing together. In some embodiments, a double-stranded oligonucleotide comprises two covalently separated nucleic acid chains that are completely duplexed from each other. However, in some embodiments, a double-stranded oligonucleotide comprises partially duplexed, for example, two covalently separated nucleic acid chains with an overhang at one or both ends. In some embodiments, a double-stranded oligonucleotide comprises the antiparallel sequence of nucleotides, which are partially complementary, and therefore, can have one or more mispairings, and the mispairings can include internal mispairings or terminal mispairings.
如本文所用,术语“双链RNA”或“dsRNA”是指核糖核酸分子的复合物,具有双链体结构,所述双链体结构包括两条反平行且基本上互补的核酸链,相对于靶RNA(即,补体成分C3基因)具有“正义”和“反义”取向。在本公开的一些实施例中,双链RNA(dsRNA)通过本文中称为RNA干扰或RNAi的转录后基因沉默机制触发靶RNA(例如,mRNA)的降解。一般而言,dsRNA分子的每条链的大多数核苷酸是核糖核苷酸,但如本文详细描述的,每条链或两条链也可以包含一种或多种非核糖核苷酸,例如脱氧核糖核苷酸或经修饰的核苷酸。另外,如本文所用,“RNAi”可以包含具有化学修饰的核糖核苷酸;RNAi可以包含在多个核苷酸处的实质性修饰。As used herein, the term "double-stranded RNA" or "dsRNA" refers to a complex of ribonucleic acid molecules having a duplex structure comprising two antiparallel and substantially complementary nucleic acid strands having "sense" and "antisense" orientations relative to a target RNA (i.e., a complement component C3 gene). In some embodiments of the present disclosure, double-stranded RNA (dsRNA) triggers degradation of a target RNA (e.g., mRNA) through a post-transcriptional gene silencing mechanism referred to herein as RNA interference or RNAi. Generally, the majority of the nucleotides of each strand of a dsRNA molecule are ribonucleotides, but as described in detail herein, each strand or both strands may also comprise one or more non-ribonucleotides, such as deoxyribonucleotides or modified nucleotides. Additionally, as used herein, "RNAi" may comprise ribonucleotides having chemical modifications; RNAi may comprise substantial modifications at multiple nucleotides.
如本文所用,术语“iRNA”、“RNAi剂”、“iRNA剂”、“RNA干扰剂”在本文中可互换使用,是指包含本文定义的所述术语的RNA并且介导RNA转录物的靶向裂解的剂通过RNA诱导型缄黙化复合体(RISC)途径。RNA干扰(RNAi)是指导mRNA序列特异性降解的制程。RNAi调节,例如,抑制补体成分C3在细胞中的表达,例如个体内的细胞,例如哺乳动物个体。As used herein, the terms "iRNA," "RNAi agent," "iRNA agent," and "RNA interference agent" are used interchangeably herein and refer to an agent that comprises RNA, as such terms are defined herein, and that mediates targeted cleavage of RNA transcripts via the RNA-induced silencing complex (RISC) pathway. RNA interference (RNAi) is a process that directs sequence-specific degradation of mRNA. RNAi modulates, for example, inhibits expression of complement component C3 in cells, for example, cells within an individual, such as a mammalian individual.
如本文所用,“缀合”是指两个或多个各自具有特定功能的化学部分之间以共价连接的方式彼此连接;相应地,“缀合物”是指该各个化学部分之间通过共价连接而形成的化合物。进一步地,“siRNA缀合物”表示一个或多个具有特定功能的化学部分共价连接至siRNA上而形成的化合物。在下文中,有时也将本公开的siRNA缀合物简称为“缀合物”。siRNA缀合物应根据上下文,理解为siRNA缀合物的总称,第一种siRNA缀合物或第二种siRNA缀合物,或siRNA正义链缀合物或siRNA反义链缀合物。As used herein, "conjugation" refers to the covalent attachment of two or more chemical moieties, each with a specific function, to each other; accordingly, "conjugate" refers to a compound formed by covalent attachment of the chemical moieties. Furthermore, "siRNA conjugate" refers to a compound formed by covalent attachment of one or more chemical moieties with a specific function to siRNA. Hereinafter, the siRNA conjugates of the present disclosure will sometimes be referred to as "conjugates." siRNA conjugates should be understood as a general term for siRNA conjugates, the first siRNA conjugate or the second siRNA conjugate, or the siRNA sense strand conjugate or the siRNA antisense strand conjugate, depending on the context.
如本文所用,术语“经修饰的核苷酸”是指独立地具有经修饰的糖部分、经修饰的核苷酸间键或经修饰的核碱基或其任何组合的核苷酸。因此,术语“经修饰的核苷酸”涵盖对核苷间键、糖部分或核碱基的取代、添加或去除,例如官能团或原子。适用于本公开的药剂的修饰包含本文所公开的或本领域已知的所有类型的修饰。As used herein, the term "modified nucleotide" refers to a nucleotide that independently has a modified sugar moiety, a modified internucleotide linkage, or a modified nucleobase, or any combination thereof. Thus, the term "modified nucleotide" encompasses substitutions, additions, or removals of internucleoside linkages, sugar moieties, or nucleobases, such as functional groups or atoms. Modifications suitable for use with the agents of the present disclosure include all types of modifications disclosed herein or known in the art.
如本文所使用的,术语“核苷酸突出端”是指从双链RNAi的双链体结构突出的至少一个未配对的核苷酸。例如,当dsRNA的一条链的3'端延伸超过另一条链的5'端时,或者反之亦然,则存在核苷酸突出端。dsRNA可以包括至少一个核苷酸的突出端;可替代地,突出端可以包括至少两个核苷酸、至少三个核苷酸、至少四个核苷酸、至少五个核苷酸或更多。核苷酸突出端可以包括以下或由以下组成:核苷酸/核苷类似物,包含脱氧核苷酸/核苷。突出端可以在正义链、反义链或其任何组合上。此外,突出端的核苷酸可以存在于dsRNA的反义链或正义链的5'端、3'端或两端上。As used herein, the term "nucleotide overhang" refers to at least one unpaired nucleotide that protrudes from the duplex structure of a double-stranded RNAi. For example, a nucleotide overhang exists when the 3' end of one strand of a dsRNA extends beyond the 5' end of the other strand, or vice versa. The dsRNA may include an overhang of at least one nucleotide; alternatively, the overhang may include at least two nucleotides, at least three nucleotides, at least four nucleotides, at least five nucleotides or more. The nucleotide overhang may include or consist of nucleotide/nucleoside analogs, including deoxynucleotides/nucleosides. The overhang may be on the sense strand, the antisense strand, or any combination thereof. In addition, the nucleotides of the overhang may be present on the 5' end, the 3' end, or both ends of the antisense strand or the sense strand of the dsRNA.
如本文所用,术语“裸序列”是指未经修饰的核苷酸序列。As used herein, the term "naked sequence" refers to an unmodified nucleotide sequence.
如本文所用,术语“抑制”可与“敲低”、“减少”、“沉默”、“下调”、“压制”及其他类似术语互换使用,并且包括任何程度的抑制作用。As used herein, the term "inhibit" is used interchangeably with "knockdown," "reduction," "silencing," "downregulate," "suppression," and other similar terms, and includes any degree of inhibition.
短语“抑制补体成分C3的表达”旨在指抑制任何补体成分C3基因(比如,例如,小鼠补体成分C3基因、大鼠补体成分C3基因、猴补体成分C3基因或人补体成分C3基因)以及补体成分C3基因的变体或突变体的表达。因此,在基因操纵细胞、细胞群或生物体的背景下,补体成分C3基因可以是野生型补体成分C3基因、突变补体成分C3基因或转基因补体成分C3基因。The phrase "inhibiting the expression of complement component C3" is intended to refer to inhibiting the expression of any complement component C3 gene (such as, for example, a mouse complement component C3 gene, a rat complement component C3 gene, a monkey complement component C3 gene, or a human complement component C3 gene), as well as variants or mutants of complement component C3 genes. Thus, in the context of genetically manipulated cells, cell populations, or organisms, the complement component C3 gene can be a wild-type complement component C3 gene, a mutant complement component C3 gene, or a transgenic complement component C3 gene.
“抑制补体成分C3基因的表达”包括任何水平补体成分C3基因的抑制,例如,至少部分抑制补体成分C3基因的表达。可以基于与补体成分C3基因表达相关的任何变量的水平或水平的变化评估补体成分C3基因的表达,例如,补体成分mRNA水平或补体成分C3蛋白水平,或通过抑制Gluc和C3融合蛋白基因的mRNA水平,进而抑制Gluc蛋白的水平间接反映C3蛋白水平的抑制。"Inhibiting complement component C3 gene expression" includes inhibition of complement component C3 gene expression at any level, for example, at least partial inhibition of complement component C3 gene expression. Complement component C3 gene expression can be assessed based on the level or change in the level of any variable associated with complement component C3 gene expression, for example, complement component mRNA levels or complement component C3 protein levels, or indirectly reflects inhibition of C3 protein levels by inhibiting the mRNA levels of Gluc and C3 fusion protein genes, thereby inhibiting the level of Gluc protein.
可以在个体细胞或细胞群中评估该水平,包括例如,来自受试者的样品。可以理解的是,补体成分C3主要在肝脏中表达,但也在脑、胆囊、心脏和肾脏中表达,并且存在于循环中。Levels can be assessed in individual cells or cell populations, including, for example, a sample from a subject. It is understood that complement component C3 is primarily expressed in the liver, but is also expressed in the brain, gall bladder, heart, and kidneys, and is present in the circulation.
抑制可以通过与对照水平相比与补体成分C3表达相关的一种或多种变量的绝对或相对水平的降低来评估。对照水平可以是本领域中使用的任何类型的对照水平,例如,给药前基线水平,或从未经处理或使用对照(比如,例如,仅缓冲液对照或非活性剂对照)处理的相似受试者中确定的水平。Inhibition can be assessed by a decrease in the absolute or relative level of one or more variables associated with complement component C3 expression compared to a control level. The control level can be any type of control level used in the art, for example, a pre-dose baseline level, or a level determined from a similar subject that has not been treated or that has been treated with a control, such as, for example, a buffer-only control or an inactive agent control.
术语“药学上可接受的盐”是指那些保留游离碱或游离酸的生物有效性和特性的盐,其并非在生物学上或其它方面所不希望的。这些盐用无机酸诸如盐酸、氢溴酸、硫酸、硝酸、磷酸(特别是盐酸)和有机酸诸如乙酸、丙酸、乙醇酸、丙酮酸、草酸、马来酸、丙二酸、琥珀酸、富马酸、酒石酸、柠檬酸、苯甲酸、肉桂酸、扁桃酸、甲基磺酸、乙基磺酸、对甲苯磺酸、水杨酸、N-乙酰基半胱氨酸形成。此外,这些盐可以通过向游离酸添加无机碱或有机碱制备。衍生自无机碱的盐包括但不限于碱金属盐(如钠盐、钾盐和锂盐)、铵盐、碱土金属盐(如钙盐和镁盐)。衍生自有机碱的盐包括但不限于与下述有机碱(例如有机胺)形成的盐:伯胺、仲胺和叔胺,取代胺包括天然出现的取代胺、环状胺和碱性离子交换树脂,诸如异丙胺、三甲胺、二乙胺、三乙胺、三丙胺、乙醇胺、赖氨酸、精氨酸、N-乙基哌啶、哌啶、聚胺树脂。本公开的寡核苷酸也可以呈两性离子的形式存在。特别优选的本公开的药用盐是钠盐、锂盐、钾盐和三烷基铵盐。The term "pharmaceutically acceptable salt" refers to salts that retain the biological effectiveness and characteristics of free alkali or free acid, which are not biologically or otherwise undesirable. These salts are formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid (particularly hydrochloric acid) and organic acids such as acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methylsulfonic acid, ethylsulfonic acid, p-toluenesulfonic acid, salicylic acid, N-acetylcysteine. In addition, these salts can be prepared by adding inorganic bases or organic bases to the free acid. Salts derived from inorganic bases include but are not limited to alkali metal salts (such as sodium salts, potassium salts and lithium salts), ammonium salts, alkaline earth metal salts (such as calcium salts and magnesium salts). Salts derived from organic bases include, but are not limited to, salts formed with the following organic bases (e.g., organic amines): primary amines, secondary amines, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines, and basic ion exchange resins such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, ethanolamine, lysine, arginine, N-ethylpiperidine, piperidine, and polyamine resins. The oligonucleotides of the present disclosure may also exist in the form of zwitterions. Particularly preferred pharmaceutically acceptable salts of the present disclosure are sodium salts, lithium salts, potassium salts, and trialkylammonium salts.
如本文所用,术语“受试者”是内源性或异源性表达靶基因的动物,如哺乳动物,包含灵长类动物(如人、非人灵长类动物,例如猴子和黑猩猩)、非灵长类动物(如牛、猪、马、山羊、兔子、绵羊、仓鼠、豚鼠、猫、狗、大鼠或小鼠)或鸟类。在一个实施例中,受试者是人。As used herein, the term "subject" refers to an animal that expresses the target gene endogenously or heterologously, such as a mammal, including primates (such as humans, non-human primates, such as monkeys and chimpanzees), non-primates (such as cows, pigs, horses, goats, rabbits, sheep, hamsters, guinea pigs, cats, dogs, rats or mice) or birds. In one embodiment, the subject is a human.
如本文所用,术语“治疗(treating)”或“治疗(treatment)”是指有益或期望的结果,如减少受试者的补体成分C3相关病症的至少一种体征或症状。治疗还包含减少与不期望的补体成分C3表达相关的一种或多种体征或症状;减轻不期望的补体成分C3激活或稳定的程度;改善或缓和不期望的补体成分C3激活或稳定。治疗还包含减少与不期望的补体成分C3表达相关的一种或多种体征或症状。“治疗”也可以意指与没有治疗的预期存活期相比,延长存活期。As used herein, the term "treating" or "treatment" refers to a beneficial or desired result, such as reducing at least one sign or symptom of a complement component C3-associated disorder in a subject. Treatment also includes reducing one or more signs or symptoms associated with undesirable complement component C3 expression; reducing the extent of undesirable complement component C3 activation or stabilization; ameliorating or alleviating undesirable complement component C3 activation or stabilization. Treatment also includes reducing one or more signs or symptoms associated with undesirable complement component C3 expression. "Treatment" can also mean prolonging survival compared to expected survival in the absence of treatment.
如本文所用,术语“预防(prevention)”或“预防(preventing)”当用于提及疾病或病症时,将受益于补体成分C3基因表达或补体成分C3蛋白产生的减少。As used herein, the terms "prevention" or "preventing" when used in reference to a disease or condition that would benefit from a reduction in complement component C3 gene expression or complement component C3 protein production.
如本文所用,术语“治疗有效量”旨在包含当向患有补体成分C3相关病症的受试者施用时足以影响疾病的治疗(例如,通过减少、改善或维持现有疾病或一种或多种疾病症状)的RNAi药剂的量。“治疗有效量”可能因RNAi药剂、药剂如何施用、疾病和其严重程度以及病史、年龄、体重、家族史、基因组成、先前或伴随治疗的类型(如果有的话)以及待治疗受试者的其它个体特征而异。As used herein, the term "therapeutically effective amount" is intended to encompass an amount of an RNAi agent that, when administered to a subject suffering from a complement component C3-associated disorder, is sufficient to affect treatment of the disease (e.g., by reducing, ameliorating, or maintaining an existing disease or one or more disease symptoms). A "therapeutically effective amount" may vary depending on the RNAi agent, how the agent is administered, the disease and its severity, as well as medical history, age, weight, family history, genetic makeup, type of previous or concomitant treatment (if any), and other individual characteristics of the subject to be treated.
如本文所用,术语“预防有效量”旨在包含当向患有补体成分C3相关病症的受试者施用时足以预防或改善病症或所述病症的一种或多种症状的RNAi药剂的量。改善疾病包含减缓疾病的进程或降低后期发展的疾病的严重程度。“预防有效量”可能因RNAi药剂、药剂如何施用、疾病风险的程度以及病史、年龄、体重、家族史、基因构成、先前治疗或伴随治疗的类型(如果有的话)以及要治疗的患者的其它个体特征而变化。As used herein, the term "prophylactically effective amount" is intended to encompass an amount of an RNAi agent that, when administered to a subject suffering from a complement component C3-associated disorder, is sufficient to prevent or ameliorate the disorder or one or more symptoms of the disorder. Amelioration of the disease includes slowing the progression of the disease or reducing the severity of the disease that develops later. A "prophylactically effective amount" may vary depending on the RNAi agent, how the agent is administered, the degree of disease risk, and the patient's medical history, age, weight, family history, genetic makeup, type of previous or concomitant therapy (if any), and other individual characteristics of the patient being treated.
在一方面,本公开提供了一种用于抑制补体成分C3表达的寡核苷酸或其药学上可接受的盐,寡核苷酸包含正义链和反义链,正义链具有与SEQ ID NO.1-49和51-305中任一所示的序列或其片段、或所述序列或其片段的修饰序列至少80%以上的序列同一性的序列,优选具有85%、90%、95%、96%、97%、98%、99%以上的序列同一性的序列;反义链具有与SEQ ID NO.306-586、588-586和1002-1009中任一所示的序列或其片段、或所述序列或其片段的修饰序列至少80%以上的序列同一性的序列,优选具有85%、90%、95%、96%、97%、98%、99%以上的序列同一性的序列。In one aspect, the present disclosure provides an oligonucleotide or a pharmaceutically acceptable salt thereof for inhibiting the expression of complement component C3, the oligonucleotide comprising a sense chain and an antisense chain, the sense chain having a sequence having at least 80% sequence identity with a sequence shown in any one of SEQ ID NOs. 1-49 and 51-305, or a fragment thereof, or a modified sequence of the sequence or its fragment, preferably a sequence having 85%, 90%, 95%, 96%, 97%, 98%, or 99% sequence identity; the antisense chain having a sequence having at least 80% sequence identity with a sequence shown in any one of SEQ ID NOs. 306-586, 588-586, and 1002-1009, or a fragment thereof, or a modified sequence of the sequence or its fragment, preferably a sequence having 85%, 90%, 95%, 96%, 97%, 98%, or 99% sequence identity.
在本公开的一些实施方案中,其中每个链在长度上独立地为19至25个核苷酸。In some embodiments of the present disclosure, wherein each strand is independently 19 to 25 nucleotides in length.
在本公开的一些实施方案中,反义链长度为19至23个核苷酸。In some embodiments of the present disclosure, the antisense strand is 19 to 23 nucleotides in length.
在本公开的一些实施方案中,正义链长度为19至23个核苷酸。In some embodiments of the present disclosure, the sense strand is 19 to 23 nucleotides in length.
在本公开的一些实施方案中,寡核苷酸包含长度为一个或多个核苷酸的5'和/或3'-突出端序列,其中5'和/或3'-突出端序列存在于反义链和/或正义链上。在一个实施例中,寡核苷酸的反义链在3'端或5'端处的突出端具有1个至10个核苷酸,例如1个、2个、3个、4个、5个、6个、7个、8个、9个或10个核苷酸。在一个实施例中,dsRNA的正义链在3'端或5'端处的突出端具有1个至10个核苷酸,例如,1个、2个、3个、4个、5个、6个、7个、8个、9个或10个核苷酸。在另一个实施例中,突出端中的一个或多个核苷酸被核苷硫代磷酸盐替代。In some embodiments of the present disclosure, the oligonucleotide comprises a 5' and/or 3'-overhang sequence having a length of one or more nucleotides, wherein the 5' and/or 3'-overhang sequence is present on the antisense strand and/or the sense strand. In one embodiment, the antisense strand of the oligonucleotide has 1 to 10 nucleotides at the 3' end or the 5' overhang at the end. For example, 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 nucleotides. In one embodiment, the sense strand of the dsRNA has 1 to 10 nucleotides at the 3' end or the 5' overhang at the end. For example, 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 nucleotides. In another embodiment, the one or more nucleotides in the overhang are replaced by nucleoside thiophosphates.
在本公开的一些实施方案中,反义链带有1个或2个突出端。In some embodiments of the present disclosure, the antisense strand has one or two overhangs.
在本公开的一些实施方案中,正义链带有1个或2个突出端。In some embodiments of the present disclosure, the sense strand has one or two overhangs.
在本公开的一些实施方案中,寡核苷酸包含长度为1个或2个核苷酸的3'-突出端序列。In some embodiments of the present disclosure, the oligonucleotide comprises a 3'-overhang sequence that is 1 or 2 nucleotides in length.
在本公开的一些实施方案中,寡核苷酸包含长度为1个或2个核苷酸的5'-突出端序列。In some embodiments of the present disclosure, the oligonucleotide comprises a 5'-overhang sequence that is 1 or 2 nucleotides in length.
在本公开的一些实施方案中,3'-突出端序列存在于反义链上。在一些实施方案中,突出端序列选自:AA、AC、AG、AU、CA、CC、CU、GA、GC、GG、GU、UA、UC、UG、UU。In some embodiments of the present disclosure, the 3'-overhang sequence is present on the antisense strand. In some embodiments, the overhang sequence is selected from the group consisting of: AA, AC, AG, AU, CA, CC, CU, GA, GC, GG, GU, UA, UC, UG, UU.
在本公开的一些实施方案中,寡核苷酸包含长度各自在19至23个核苷酸的范围内的反义链和正义链。In some embodiments of the present disclosure, the oligonucleotide comprises an antisense strand and a sense strand each ranging from 19 to 23 nucleotides in length.
在本公开的一些实施方案中,正义链与反义链形成双链体区域。In some embodiments of the present disclosure, the sense strand and the antisense strand form a duplex region.
在本公开的一些实施方案中,正义链和反义链分别为19/21配对、21/21配对、21/23配对或23/23配对的双链体结构。In some embodiments of the present disclosure, the sense strand and the antisense strand are respectively in a 19/21 paired, 21/21 paired, 21/23 paired or 23/23 paired duplex structure.
在本公开的一些实施方案中,寡核苷酸包含长度为1个核苷酸的5'突出端和1个3'-突出端序列,其中5'突出端和3'-突出端序列存在于反义链上,且其中正义链长度为19个核苷酸且反义链长度为21个核苷酸,使得正义链和反义链形成长度为19个核苷酸的双链体。In some embodiments of the present disclosure, the oligonucleotide comprises a 5' overhang of 1 nucleotide in length and a 3'-overhang sequence, wherein the 5' overhang and the 3'-overhang sequence are present on the antisense strand, and wherein the sense strand is 19 nucleotides in length and the antisense strand is 21 nucleotides in length, such that the sense strand and the antisense strand form a duplex of 19 nucleotides in length.
在本公开的一些实施方案中,寡核苷酸包含长度为2个核苷酸的3'-突出端序列,其中3'-突出端序列存在于反义链上,且其中正义链长度为19个核苷酸且反义链长度为21个核苷酸,使得正义链和反义链形成长度为19个核苷酸的双链体。In some embodiments of the present disclosure, the oligonucleotide comprises a 3'-overhang sequence that is 2 nucleotides in length, wherein the 3'-overhang sequence is present on the antisense strand, and wherein the sense strand is 19 nucleotides in length and the antisense strand is 21 nucleotides in length, such that the sense strand and the antisense strand form a duplex that is 19 nucleotides in length.
在本公开的一些实施方案中,寡核苷酸包含长度为2个核苷酸的3'-突出端序列,其中3'-突出端序列存在于反义链和正义链上,且其中正义链长度为21个核苷酸且反义链长度为21个核苷酸,使得正义链和反义链形成长度为19个核苷酸的双链体。In some embodiments of the present disclosure, the oligonucleotide comprises a 3'-overhang sequence that is 2 nucleotides in length, wherein the 3'-overhang sequence is present on the antisense strand and the sense strand, and wherein the sense strand is 21 nucleotides in length and the antisense strand is 21 nucleotides in length, such that the sense strand and the antisense strand form a duplex that is 19 nucleotides in length.
在本公开的一些实施方案中,寡核苷酸包含长度为2个核苷酸的3'-突出端序列,其中3'-突出端序列存在于反义链上,且其中正义链长度为21个核苷酸且反义链长度为23个核苷酸,使得正义链和反义链形成长度为21个核苷酸的双链体。In some embodiments of the present disclosure, the oligonucleotide comprises a 3'-overhang sequence that is 2 nucleotides in length, wherein the 3'-overhang sequence is present on the antisense strand, and wherein the sense strand is 21 nucleotides in length and the antisense strand is 23 nucleotides in length, such that the sense strand and the antisense strand form a duplex that is 21 nucleotides in length.
在本公开的一些实施方案中,寡核苷酸包含长度为2个核苷酸的3'-突出端序列,其中3'-突出端序列存在于反义链和正义链上,且其中正义链长度为23个核苷酸且反义链长度为23个核苷酸,使得正义链和反义链形成长度为21个核苷酸的双链体。In some embodiments of the present disclosure, the oligonucleotide comprises a 3'-overhang sequence that is 2 nucleotides in length, wherein the 3'-overhang sequence is present on the antisense strand and the sense strand, and wherein the sense strand is 23 nucleotides in length and the antisense strand is 23 nucleotides in length, such that the sense strand and the antisense strand form a duplex that is 21 nucleotides in length.
在本公开的一些实施方案中,寡核苷酸的药学上可接受的盐可以通过向游离酸添加无机碱或有机碱制备。衍生自无机碱的盐包括但不限于碱金属盐(如钠盐、钾盐和锂盐)、铵盐、碱土金属盐(如钙盐和镁盐)。衍生自有机碱(例如有机胺)的盐包括但不限于与下述有机碱形成的盐:伯胺、仲胺和叔胺,取代胺包括天然出现的取代胺、环状胺和碱性离子交换树脂,诸如异丙胺、三甲胺、二乙胺、三乙胺、三丙胺、乙醇胺、赖氨酸、精氨酸、N-乙基哌啶、哌啶、聚胺树脂。In some embodiments of the present disclosure, the pharmaceutically acceptable salt of the oligonucleotide can be prepared by adding an inorganic base or an organic base to the free acid. Salts derived from inorganic bases include but are not limited to alkali metal salts (such as sodium salts, potassium salts and lithium salts), ammonium salts, alkaline earth metal salts (such as calcium salts and magnesium salts). Salts derived from organic bases (such as organic amines) include but are not limited to salts formed with the following organic bases: primary amines, secondary amines and tertiary amines, substituted amines include naturally occurring substituted amines, cyclic amines and basic ion exchange resins, such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, ethanolamine, lysine, arginine, N-ethylpiperidine, piperidine, polyamine resins.
在本公开的一些实施方案中,寡核苷酸的药学上可接受的盐的实例包括但不限于铵盐,例如叔烷基胺化合物的盐(例如三乙胺盐),金属盐例如钠盐、钾盐和镁盐等。In some embodiments of the present disclosure, examples of pharmaceutically acceptable salts of oligonucleotides include, but are not limited to, ammonium salts, such as salts of tertiary alkylamine compounds (e.g., triethylamine salts), metal salts such as sodium salts, potassium salts, and magnesium salts.
在本公开的一些实施方案中,寡核苷酸或其盐可以是水合物或溶剂合物的形式。In some embodiments of the present disclosure, the oligonucleotide or a salt thereof may be in the form of a hydrate or a solvate.
在本公开的一些实施方案中,寡核苷酸包含至少一个经修饰的核苷酸。In some embodiments of the present disclosure, the oligonucleotide comprises at least one modified nucleotide.
在本公开的一些实施方案中,寡核苷酸包含至少一个2'-修饰的核苷酸。In some embodiments of the present disclosure, the oligonucleotide comprises at least one 2'-modified nucleotide.
在本公开的一些实施方案中,2'-修饰的核苷酸选自2'-烷氧基修饰的核苷酸、2'-经取代的烷氧基修饰的核苷酸、2'-烷基修饰的核苷酸、2'-经取代的烷基修饰的核苷酸、2'-氨基修饰的核苷酸、2'-经取代的氨基修饰的核苷酸、2'-氟代修饰的核苷酸、2'-脱氧核苷酸中的一种或多种。In some embodiments of the present disclosure, the 2'-modified nucleotides are selected from one or more of 2'-alkoxy modified nucleotides, 2'-substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-amino modified nucleotides, 2'-substituted amino modified nucleotides, 2'-fluoro modified nucleotides, and 2'-deoxy nucleotides.
在本公开的一些实施方案中,2'-修饰是选自以下的修饰:2'-甲氧基、2'-乙酰氨基、2'-氨基乙基、2'-氟、2'-O-甲氧基乙基。In some embodiments of the present disclosure, the 2'-modification is a modification selected from the group consisting of 2'-methoxy, 2'-acetamido, 2'-aminoethyl, 2'-fluoro, 2'-O-methoxyethyl.
在本公开的一些实施方案中,寡核苷酸在5'末端具有5'-磷酸酯类似物修饰的核苷酸;优选地,5'-磷酸酯类似物修饰的核苷酸具有式(I)所示的乙烯基膦酸酯修饰的核苷酸,其中,R选自H、OH、氟、2'-甲氧基、2'-乙酰氨基、2'-氨基乙基和2'-O-甲氧基乙基,Base表示核酸碱基,选自A、G、C、T和U;优选地,5'-磷酸酯类似物修饰的核苷酸具有式(II)所示的乙烯基磷酸酯修饰的核苷酸,其中,R选自H、OH、氟、2'-甲氧基、2'-乙酰氨基、2'-氨基乙基和2'-O-甲氧基乙基;更优选地,5'-膦酸酯类似物修饰的核苷酸为式(III)所示的APU或式(IV)所示的VPUm;
In some embodiments of the present disclosure, the oligonucleotide has a 5'-phosphate analog modified nucleotide at the 5'end; preferably, the 5'-phosphate analog modified nucleotide has a vinyl phosphonate modified nucleotide as shown in formula (I), wherein R is selected from H, OH, fluorine, 2'-methoxy, 2'-acetylamino, 2'-aminoethyl and 2'-O-methoxyethyl, and Base represents a nucleic acid base selected from A, G, C, T and U; preferably, the 5'-phosphate analog modified nucleotide has a vinyl phosphate modified nucleotide as shown in formula (II), wherein R is selected from H, OH, fluorine, 2'-methoxy, 2'-acetylamino, 2'-aminoethyl and 2'-O-methoxyethyl; more preferably, the 5'-phosphonate analog modified nucleotide is APU as shown in formula (III) or VPUm as shown in formula (IV);
在本公开的一些实施方案中,寡核苷酸包含6-(3-(2-羧乙基)苯基)嘌呤修饰的核苷酸;优选地,寡核苷酸包含式M,其为式(V)所示的2'-O-甲基-6-(3-(2-羧乙基)苯基)-嘌呤核苷酸;
In some embodiments of the present disclosure, the oligonucleotide comprises a 6-(3-(2-carboxyethyl)phenyl)purine modified nucleotide; preferably, the oligonucleotide comprises formula M, which is a 2'-O-methyl-6-(3-(2-carboxyethyl)phenyl)-purine nucleotide shown in formula (V);
在本公开的一些实施方案中,寡核苷酸包含选自式(VI)所示的尿苷-2'-磷酸酯(U-2'5')、式(VII)所示的鸟苷-2'-磷酸酯(G-2'5');式(VIII)所示的胞苷-2'-磷酸酯(C-2'5');式(IX)所示腺苷-2'-磷酸酯(A-2'5')和式(X))所示的胸苷-2'-磷酸酯(T-2'5');
In some embodiments of the present disclosure, the oligonucleotide comprises a uridine-2'-phosphate (U-2'5') selected from the group consisting of uridine-2'-phosphate (U-2'5') of formula (VI), guanosine-2'-phosphate (G-2'5') of formula (VII); cytidine-2'-phosphate (C-2'5') of formula (VIII); adenosine-2'-phosphate (A-2'5') of formula (IX); and thymidine-2'-phosphate (T-2'5') of formula (X);
在本公开的一些实施方案中,寡核苷酸包含至少一个经修饰的核苷酸间键。In some embodiments of the present disclosure, the oligonucleotide comprises at least one modified internucleotide linkage.
在本公开的一些实施方案中,至少一个修饰的核苷酸间键是硫代磷酸酯键。硫代磷酸酯核苷酸间键修饰可以发生在链的任何位置中的正义链、反义链或两条链的任何核苷酸上。例如,核苷酸间键修饰可以发生在正义链或反义链上的每个核苷酸上;每个核苷酸间键修饰可以在正义链或反义链上以交替模式发生;或正义链或反义链可以以交替模式含有两种核苷酸间键修饰。正义链上的核苷酸间键修饰的交替模式可以与反义链相同或不同,并且正义链上核苷酸间键修饰的交替模式可以相对于反义链上核苷酸间键的交替模式具有偏移。在一个实施例中,双链RNAi药剂包括4个至8个硫代磷酸酯核苷酸间键。在一些实施例中,反义链在5'端处包括两个硫代磷酸酯核苷酸间键,并且在3'端处包括两个硫代磷酸酯核苷酸间键,并且正义链在5'端或3'端处包括至少两个硫代磷酸酯核苷酸间键。In some embodiments of the present disclosure, at least one modified internucleotide bond is a phosphorothioate bond. The phosphorothioate internucleotide bond modification can occur on any nucleotide of the sense strand, antisense strand, or both strands at any position in the strand. For example, the internucleotide bond modification can occur on each nucleotide on the sense strand or antisense strand; each internucleotide bond modification can occur in an alternating pattern on the sense strand or antisense strand; or the sense strand or antisense strand can contain two internucleotide bond modifications in an alternating pattern. The alternating pattern of the internucleotide bond modification on the sense strand can be the same or different from the antisense strand, and the alternating pattern of the internucleotide bond modification on the sense strand can have an offset relative to the alternating pattern of the internucleotide bond on the antisense strand. In one embodiment, the double-stranded RNAi agent includes 4 to 8 phosphorothioate internucleotide bonds. In some embodiments, the antisense strand includes two phosphorothioate internucleotide bonds at the 5' end and two phosphorothioate internucleotide bonds at the 3' end, and the sense strand includes at least two phosphorothioate internucleotide bonds at the 5' end or the 3' end.
在本公开的一些实施方案中,正义链选自SEQ ID NO.2、5、6、15、18、20、37、41、48、67、81、91、115、117、119、125、133、163、175、183、189、208、213、215、216、217、224、225、227、229、230、235、237、244、247、250、251、252、253、255、256、257、264、267、271、277、278、288、289、291、302、303中任一所述的未修饰寡核苷酸,或SEQ ID NO.588-791中任一所述的修饰寡核苷酸;反义链选自SEQ ID NO.307、310、311、320、323、325、342、346、353、372、386、396、420、422、424、430、438、468、480、488、494、513、518、520、521、522、529、530、532、534、535、540、542、549、552、555、556、557、558、560、561、562、569、572、573、574、575、576、578、579、580、581、582、584、585、1009中任一所述的未修饰寡核苷酸,或SEQ ID NO.793-1001、1010-1021中任一所述的修饰寡核苷酸。In some embodiments of the present disclosure, the sense strand is selected from SEQ ID NO. 2, 5, 6, 15, 18, 20, 37, 41, 48, 67, 81, 91, 115, 117, 119, 125, 133, 163, 175, 183, 189, 208, 213, 215, 216, 217, 224, 225, 227, 229, 230, 235 , 237, 244, 247, 250, 251, 252, 253, 255, 256, 257, 264, 267, 271, 277, 278, 288, 289, 291, 302, 303, or a modified oligonucleotide of any one of SEQ ID NOs. 588-791; the antisense strand is selected from SEQ ID NO. 307, 310, 311, 320, 323, 325, 342, 346, 353, 372, 386, 396, 420, 422, 424, 430, 438, 468, 480, 488, 494, 513, 518, 520, 521, 522, 529, 530, 532, 534, 535, 540, 542, 549, 552, An unmodified oligonucleotide as described in any one of 555, 556, 557, 558, 560, 561, 562, 569, 572, 573, 574, 575, 576, 578, 579, 580, 581, 582, 584, 585, 1009, or a modified oligonucleotide as described in any one of SEQ ID NO.793-1001, 1010-1021.
在本公开的一些实施方案中,寡核苷酸包含选自下述正义链和反义链组合中的任一:In some embodiments of the present disclosure, the oligonucleotide comprises any one selected from the following sense and antisense strand combinations:
(1)正义链包含SEQ ID NO.2所示的序列,和反义链包含SEQ ID NO.307所示的序列;(1) the sense strand comprises the sequence shown in SEQ ID NO. 2, and the antisense strand comprises the sequence shown in SEQ ID NO. 307;
(2)正义链包含SEQ ID NO.5所示的序列,和反义链包含SEQ ID NO.310所示的序列;(2) the sense strand comprises the sequence shown in SEQ ID NO. 5, and the antisense strand comprises the sequence shown in SEQ ID NO. 310;
(3)正义链包含SEQ ID NO.6所示的序列,和反义链包含SEQ ID NO.311所示的序列;(3) the sense strand comprises the sequence shown in SEQ ID NO. 6, and the antisense strand comprises the sequence shown in SEQ ID NO. 311;
(4)正义链包含SEQ ID NO.15所示的序列,和反义链包含SEQ ID NO.320所示的序列;(4) the sense strand comprises the sequence shown in SEQ ID NO. 15, and the antisense strand comprises the sequence shown in SEQ ID NO. 320;
(5)正义链包含SEQ ID NO.18所示的序列,和反义链包含SEQ ID NO.323所示的序列;(5) the sense strand comprises the sequence shown in SEQ ID NO. 18, and the antisense strand comprises the sequence shown in SEQ ID NO. 323;
(6)正义链包含SEQ ID NO.37所示的序列,和反义链包含SEQ ID NO.342所示的序列;(6) the sense strand comprises the sequence shown in SEQ ID NO. 37, and the antisense strand comprises the sequence shown in SEQ ID NO. 342;
(7)正义链包含SEQ ID NO.41所示的序列,和反义链包含SEQ ID NO.346所示的序列;(7) the sense strand comprises the sequence shown in SEQ ID NO. 41, and the antisense strand comprises the sequence shown in SEQ ID NO. 346;
(8)正义链包含SEQ ID NO.48所示的序列,和反义链包含SEQ ID NO.353所示的序列;(8) the sense strand comprises the sequence shown in SEQ ID NO. 48, and the antisense strand comprises the sequence shown in SEQ ID NO. 353;
(9)正义链包含SEQ ID NO.67所示的序列,和反义链包含SEQ ID NO.372所示的序列;(9) the sense strand comprises the sequence shown in SEQ ID NO. 67, and the antisense strand comprises the sequence shown in SEQ ID NO. 372;
(10)正义链包含SEQ ID NO.91所示的序列,和反义链包含SEQ ID NO.396所示的序列;(10) the sense strand comprises the sequence shown in SEQ ID NO. 91, and the antisense strand comprises the sequence shown in SEQ ID NO. 396;
(11)正义链包含SEQ ID NO.117所示的序列,和反义链包含SEQ ID NO.422所示的序列;(11) the sense strand comprises the sequence shown in SEQ ID NO. 117, and the antisense strand comprises the sequence shown in SEQ ID NO. 422;
(12)正义链包含SEQ ID NO.81所示的序列,和反义链包含SEQ ID NO.386所示的序列;(12) the sense strand comprises the sequence shown in SEQ ID NO. 81, and the antisense strand comprises the sequence shown in SEQ ID NO. 386;
(13)正义链包含SEQ ID NO.189所示的序列,和反义链包含SEQ ID NO.494所示的序列;(13) the sense strand comprises the sequence shown in SEQ ID NO. 189, and the antisense strand comprises the sequence shown in SEQ ID NO. 494;
(14)正义链包含SEQ ID NO.213所示的序列,和反义链包含SEQ ID NO.518所示的序列;(14) the sense strand comprises the sequence shown in SEQ ID NO. 213, and the antisense strand comprises the sequence shown in SEQ ID NO. 518;
(15)正义链包含SEQ ID NO.217所示的序列,和反义链包含SEQ ID NO.522所示的序列;(15) the sense strand comprises the sequence shown in SEQ ID NO. 217, and the antisense strand comprises the sequence shown in SEQ ID NO. 522;
(16)正义链包含SEQ ID NO.225所示的序列,和反义链包含SEQ ID NO.530所示的序列;(16) the sense strand comprises the sequence shown in SEQ ID NO. 225, and the antisense strand comprises the sequence shown in SEQ ID NO. 530;
(17)正义链包含SEQ ID NO.230所示的序列,和反义链包含SEQ ID NO.535所示的序列;(17) the sense strand comprises the sequence shown in SEQ ID NO. 230, and the antisense strand comprises the sequence shown in SEQ ID NO. 535;
(18)正义链包含SEQ ID NO.237所示的序列,和反义链包含SEQ ID NO.542所示的序列;(18) the sense strand comprises the sequence shown in SEQ ID NO. 237, and the antisense strand comprises the sequence shown in SEQ ID NO. 542;
(19)正义链包含SEQ ID NO.247所示的序列,和反义链包含SEQ ID NO.552所示的序列;(19) the sense strand comprises the sequence shown in SEQ ID NO. 247, and the antisense strand comprises the sequence shown in SEQ ID NO. 552;
(20)正义链包含SEQ ID NO.267所示的序列,和反义链包含SEQ ID NO.572所示的序列;(20) the sense strand comprises the sequence shown in SEQ ID NO. 267, and the antisense strand comprises the sequence shown in SEQ ID NO. 572;
(21)正义链包含SEQ ID NO.271所示的序列,和反义链包含SEQ ID NO.572所示的序列;(21) the sense strand comprises the sequence shown in SEQ ID NO. 271, and the antisense strand comprises the sequence shown in SEQ ID NO. 572;
(22)正义链包含SEQ ID NO.277所示的序列,和反义链包含SEQ ID NO.573所示的序列;(22) the sense strand comprises the sequence shown in SEQ ID NO. 277, and the antisense strand comprises the sequence shown in SEQ ID NO. 573;
(23)正义链包含SEQ ID NO.278所示的序列,和反义链包含SEQ ID NO.574所示的序列;(23) the sense strand comprises the sequence shown in SEQ ID NO. 278, and the antisense strand comprises the sequence shown in SEQ ID NO. 574;
(24)正义链包含SEQ ID NO.288所示的序列,和反义链包含SEQ ID NO.575所示的序列;(24) the sense strand comprises the sequence shown in SEQ ID NO. 288, and the antisense strand comprises the sequence shown in SEQ ID NO. 575;
(25)正义链包含SEQ ID NO.289所示的序列,和反义链包含SEQ ID NO.576所示的序列;(25) the sense strand comprises the sequence shown in SEQ ID NO. 289, and the antisense strand comprises the sequence shown in SEQ ID NO. 576;
(26)正义链包含SEQ ID NO.115所示的序列,和反义链包含SEQ ID NO.420所示的序列;(26) the sense strand comprises the sequence shown in SEQ ID NO. 115, and the antisense strand comprises the sequence shown in SEQ ID NO. 420;
(27)正义链包含SEQ ID NO.291所示的序列,和反义链包含SEQ ID NO.578所示的序列;(27) the sense strand comprises the sequence shown in SEQ ID NO. 291, and the antisense strand comprises the sequence shown in SEQ ID NO. 578;
(28)正义链包含SEQ ID NO.271所示的序列,和反义链包含SEQ ID NO.579所示的序列;(28) the sense strand comprises the sequence shown in SEQ ID NO. 271, and the antisense strand comprises the sequence shown in SEQ ID NO. 579;
(29)正义链包含SEQ ID NO.302所示的序列,和反义链包含SEQ ID NO.584所示的序列;(29) the sense strand comprises the sequence shown in SEQ ID NO. 302, and the antisense strand comprises the sequence shown in SEQ ID NO. 584;
(30)正义链包含SEQ ID NO.303所示的序列,和反义链包含SEQ ID NO.585所示的序列;(30) the sense strand comprises the sequence shown in SEQ ID NO. 303, and the antisense strand comprises the sequence shown in SEQ ID NO. 585;
(31)正义链包含SEQ ID NO.289所示的序列,和反义链包含SEQ ID NO.582所示的序列;(31) the sense strand comprises the sequence shown in SEQ ID NO. 289, and the antisense strand comprises the sequence shown in SEQ ID NO. 582;
(32)正义链包含SEQ ID NO.277所示的序列,和反义链包含SEQ ID NO.580所示的序列;(32) the sense strand comprises the sequence shown in SEQ ID NO. 277, and the antisense strand comprises the sequence shown in SEQ ID NO. 580;
(33)正义链包含SEQ ID NO.288所示的序列,和反义链包含SEQ ID NO.581所示的序列;(33) the sense strand comprises the sequence shown in SEQ ID NO. 288, and the antisense strand comprises the sequence shown in SEQ ID NO. 581;
(34)正义链包含SEQ ID NO.278所示的序列,和反义链包含SEQ ID NO.1005所示的序列;(34) the sense strand comprises the sequence shown in SEQ ID NO. 278, and the antisense strand comprises the sequence shown in SEQ ID NO. 1005;
(35)正义链包含SEQ ID NO.278所示的序列,和反义链包含SEQ ID NO.1009所示的序列;(35) the sense strand comprises the sequence shown in SEQ ID NO. 278, and the antisense strand comprises the sequence shown in SEQ ID NO. 1009;
其中每个链在长度上独立地为19至25个核苷酸。wherein each strand is independently 19 to 25 nucleotides in length.
在本公开的一些实施方案中,寡核苷酸包含选自下述正义链和反义链组合中的任一:In some embodiments of the present disclosure, the oligonucleotide comprises any one selected from the following sense and antisense strand combinations:
(1)正义链包含SEQ ID NO.2所示的序列,和反义链包含SEQ ID NO.307所示的序列;(1) the sense strand comprises the sequence shown in SEQ ID NO. 2, and the antisense strand comprises the sequence shown in SEQ ID NO. 307;
(2)正义链包含SEQ ID NO.18所示的序列,和反义链包含SEQ ID NO.323所示的序列;(2) the sense strand comprises the sequence shown in SEQ ID NO. 18, and the antisense strand comprises the sequence shown in SEQ ID NO. 323;
(3)正义链包含SEQ ID NO.48所示的序列,和反义链包含SEQ ID NO.353所示的序列;(3) the sense strand comprises the sequence shown in SEQ ID NO. 48, and the antisense strand comprises the sequence shown in SEQ ID NO. 353;
(4)正义链包含SEQ ID NO.115所示的序列,和反义链包含SEQ ID NO.420所示的序列;(4) the sense strand comprises the sequence shown in SEQ ID NO. 115, and the antisense strand comprises the sequence shown in SEQ ID NO. 420;
(5)正义链包含SEQ ID NO.117所示的序列,和反义链包含SEQ ID NO.422所示的序列;(5) the sense strand comprises the sequence shown in SEQ ID NO. 117, and the antisense strand comprises the sequence shown in SEQ ID NO. 422;
(6)正义链包含SEQ ID NO.278所示的序列,和反义链包含SEQ ID NO.574所示的序列;(6) the sense strand comprises the sequence shown in SEQ ID NO. 278, and the antisense strand comprises the sequence shown in SEQ ID NO. 574;
(7)正义链包含SEQ ID NO.271所示的序列,和反义链包含SEQ ID NO.579所示的序列;(7) the sense strand comprises the sequence shown in SEQ ID NO. 271, and the antisense strand comprises the sequence shown in SEQ ID NO. 579;
(8)正义链包含SEQ ID NO.302所示的序列,和反义链包含SEQ ID NO.584所示的序列;(8) the sense strand comprises the sequence shown in SEQ ID NO. 302, and the antisense strand comprises the sequence shown in SEQ ID NO. 584;
(9)正义链包含SEQ ID NO.303所示的序列,和反义链包含SEQ ID NO.585所示的序列;(9) the sense strand comprises the sequence shown in SEQ ID NO. 303, and the antisense strand comprises the sequence shown in SEQ ID NO. 585;
(10)正义链包含SEQ ID NO.289所示的序列,和反义链包含SEQ ID NO.582所示的序列;(10) the sense strand comprises the sequence shown in SEQ ID NO. 289, and the antisense strand comprises the sequence shown in SEQ ID NO. 582;
(11)正义链包含SEQ ID NO.271所示的序列,和反义链包含SEQ ID NO.572所示的序列;(11) the sense strand comprises the sequence shown in SEQ ID NO. 271, and the antisense strand comprises the sequence shown in SEQ ID NO. 572;
(12)正义链包含SEQ ID NO.289所示的序列,和反义链包含SEQ ID NO.576所示的序列;(12) the sense strand comprises the sequence shown in SEQ ID NO. 289, and the antisense strand comprises the sequence shown in SEQ ID NO. 576;
(13)正义链包含SEQ ID NO.278所示的序列,和反义链包含SEQ ID NO.1009所示的序列。(13) The positive strand comprises the sequence shown in SEQ ID NO.278, and the antisense strand comprises the sequence shown in SEQ ID NO.1009.
在本公开的一些实施方案中,寡核苷酸包含选自下述正义链和反义链组合中的任一:In some embodiments of the present disclosure, the oligonucleotide comprises any one selected from the following sense and antisense strand combinations:
(1)正义链包含SEQ ID NO.588所示的序列,和反义链包含SEQ ID NO.793所示的序列;(1) the sense strand comprises the sequence shown in SEQ ID NO. 588, and the antisense strand comprises the sequence shown in SEQ ID NO. 793;
(2)正义链包含SEQ ID NO.589所示的序列,和反义链包含SEQ ID NO.794所示的序列;(2) the sense strand comprises the sequence shown in SEQ ID NO. 589, and the antisense strand comprises the sequence shown in SEQ ID NO. 794;
(3)正义链包含SEQ ID NO.590所示的序列,和反义链包含SEQ ID NO.795所示的序列;(3) the sense strand comprises the sequence shown in SEQ ID NO. 590, and the antisense strand comprises the sequence shown in SEQ ID NO. 795;
(4)正义链包含SEQ ID NO.591所示的序列,和反义链包含SEQ ID NO.796所示的序列;(4) the sense strand comprises the sequence shown in SEQ ID NO. 591, and the antisense strand comprises the sequence shown in SEQ ID NO. 796;
(5)正义链包含SEQ ID NO.592所示的序列,和反义链包含SEQ ID NO.797所示的序列;(5) the sense strand comprises the sequence shown in SEQ ID NO. 592, and the antisense strand comprises the sequence shown in SEQ ID NO. 797;
(6)正义链包含SEQ ID NO.593所示的序列,和反义链包含SEQ ID NO.798所示的序列;(6) the sense strand comprises the sequence shown in SEQ ID NO. 593, and the antisense strand comprises the sequence shown in SEQ ID NO. 798;
(7)正义链包含SEQ ID NO.594所示的序列,和反义链包含SEQ ID NO.799所示的序列;(7) the sense strand comprises the sequence shown in SEQ ID NO. 594, and the antisense strand comprises the sequence shown in SEQ ID NO. 799;
(8)正义链包含SEQ ID NO.595所示的序列,和反义链包含SEQ ID NO.800所示的序列;(8) the sense strand comprises the sequence shown in SEQ ID NO. 595, and the antisense strand comprises the sequence shown in SEQ ID NO. 800;
(9)正义链包含SEQ ID NO.596所示的序列,和反义链包含SEQ ID NO.801所示的序列;(9) the sense strand comprises the sequence shown in SEQ ID NO. 596, and the antisense strand comprises the sequence shown in SEQ ID NO. 801;
(10)正义链包含SEQ ID NO.597所示的序列,和反义链包含SEQ ID NO.802所示的序列;(10) the sense strand comprises the sequence shown in SEQ ID NO. 597, and the antisense strand comprises the sequence shown in SEQ ID NO. 802;
(11)正义链包含SEQ ID NO.599所示的序列,和反义链包含SEQ ID NO.804所示的序列;(11) the sense strand comprises the sequence shown in SEQ ID NO. 599, and the antisense strand comprises the sequence shown in SEQ ID NO. 804;
(12)正义链包含SEQ ID NO.601所示的序列,和反义链包含SEQ ID NO.806所示的序列;(12) the sense strand comprises the sequence shown in SEQ ID NO. 601, and the antisense strand comprises the sequence shown in SEQ ID NO. 806;
(13)正义链包含SEQ ID NO.634所示的序列,和反义链包含SEQ ID NO.839所示的序列;(13) the sense strand comprises the sequence shown in SEQ ID NO. 634, and the antisense strand comprises the sequence shown in SEQ ID NO. 839;
(14)正义链包含SEQ ID NO.674所示的序列,和反义链包含SEQ ID NO.879所示的序列;(14) the sense strand comprises the sequence shown in SEQ ID NO. 674, and the antisense strand comprises the sequence shown in SEQ ID NO. 879;
(15)正义链包含SEQ ID NO.698所示的序列,和反义链包含SEQ ID NO.903所示的序列;(15) the sense strand comprises the sequence shown in SEQ ID NO. 698, and the antisense strand comprises the sequence shown in SEQ ID NO. 903;
(16)正义链包含SEQ ID NO.702所示的序列,和反义链包含SEQ ID NO.907所示的序列;(16) the sense strand comprises the sequence shown in SEQ ID NO. 702, and the antisense strand comprises the sequence shown in SEQ ID NO. 907;
(17)正义链包含SEQ ID NO.710所示的序列,和反义链包含SEQ ID NO.915所示的序列;(17) the sense strand comprises the sequence shown in SEQ ID NO. 710, and the antisense strand comprises the sequence shown in SEQ ID NO. 915;
(18)正义链包含SEQ ID NO.715所示的序列,和反义链包含SEQ ID NO.920所示的序列;(18) the sense strand comprises the sequence shown in SEQ ID NO. 715, and the antisense strand comprises the sequence shown in SEQ ID NO. 920;
(19)正义链包含SEQ ID NO.722所示的序列,和反义链包含SEQ ID NO.927所示的序列;(19) the sense strand comprises the sequence shown in SEQ ID NO. 722, and the antisense strand comprises the sequence shown in SEQ ID NO. 927;
(20)正义链包含SEQ ID NO.732所示的序列,和反义链包含SEQ ID NO.937所示的序列;(20) the sense strand comprises the sequence shown in SEQ ID NO. 732, and the antisense strand comprises the sequence shown in SEQ ID NO. 937;
(21)正义链包含SEQ ID NO.752所示的序列,和反义链包含SEQ ID NO.957所示的序列;(21) the sense strand comprises the sequence shown in SEQ ID NO. 752, and the antisense strand comprises the sequence shown in SEQ ID NO. 957;
(22)正义链包含SEQ ID NO.756所示的序列,和反义链包含SEQ ID NO.957所示的序列;(22) the sense strand comprises the sequence shown in SEQ ID NO. 756, and the antisense strand comprises the sequence shown in SEQ ID NO. 957;
(23)正义链包含SEQ ID NO.762所示的序列,和反义链包含SEQ ID NO.958所示的序列;(23) the sense strand comprises the sequence shown in SEQ ID NO. 762, and the antisense strand comprises the sequence shown in SEQ ID NO. 958;
(24)正义链包含SEQ ID NO.763所示的序列,和反义链包含SEQ ID NO.959所示的序列;(24) the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 959;
(25)正义链包含SEQ ID NO.773所示的序列,和反义链包含SEQ ID NO.969所示的序列;(25) the sense strand comprises the sequence shown in SEQ ID NO. 773, and the antisense strand comprises the sequence shown in SEQ ID NO. 969;
(26)正义链包含SEQ ID NO.774所示的序列,和反义链包含SEQ ID NO.970所示的序列;(26) the sense strand comprises the sequence shown in SEQ ID NO. 774, and the antisense strand comprises the sequence shown in SEQ ID NO. 970;
(27)正义链包含SEQ ID NO.776所示的序列,和反义链包含SEQ ID NO.972所示的序列;(27) the sense strand comprises the sequence shown in SEQ ID NO. 776, and the antisense strand comprises the sequence shown in SEQ ID NO. 972;
(28)正义链包含SEQ ID NO.776所示的序列,和反义链包含SEQ ID NO.973所示的序列;(28) the sense strand comprises the sequence shown in SEQ ID NO. 776, and the antisense strand comprises the sequence shown in SEQ ID NO. 973;
(29)正义链包含SEQ ID NO.595所示的序列,和反义链包含SEQ ID NO.974所示的序列;(29) the sense strand comprises the sequence shown in SEQ ID NO. 595, and the antisense strand comprises the sequence shown in SEQ ID NO. 974;
(30)正义链包含SEQ ID NO.763所示的序列,和反义链包含SEQ ID NO.979所示的序列;(30) the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 979;
(31)正义链包含SEQ ID NO.756所示的序列,和反义链包含SEQ ID NO.987所示的序列;(31) the sense strand comprises the sequence shown in SEQ ID NO. 756, and the antisense strand comprises the sequence shown in SEQ ID NO. 987;
(32)正义链包含SEQ ID NO.762所示的序列,和反义链包含SEQ ID NO.989所示的序列;(32) the sense strand comprises the sequence shown in SEQ ID NO. 762, and the antisense strand comprises the sequence shown in SEQ ID NO. 989;
(33)正义链包含SEQ ID NO.773所示的序列,和反义链包含SEQ ID NO.991所示的序列;(33) the sense strand comprises the sequence shown in SEQ ID NO. 773, and the antisense strand comprises the sequence shown in SEQ ID NO. 991;
(34)正义链包含SEQ ID NO.752所示的序列,和反义链包含SEQ ID NO.987所示的序列;(34) the sense strand comprises the sequence shown in SEQ ID NO. 752, and the antisense strand comprises the sequence shown in SEQ ID NO. 987;
(35)正义链包含SEQ ID NO.786所示的序列,和反义链包含SEQ ID NO.993所示的序列;(35) the sense strand comprises the sequence shown in SEQ ID NO. 786, and the antisense strand comprises the sequence shown in SEQ ID NO. 993;
(36)正义链包含SEQ ID NO.763所示的序列,和反义链包含SEQ ID NO.995所示的序列;(36) the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 995;
(37)正义链包含SEQ ID NO.752所示的序列,和反义链包含SEQ ID NO.996所示的序列;(37) the sense strand comprises the sequence shown in SEQ ID NO. 752, and the antisense strand comprises the sequence shown in SEQ ID NO. 996;
(38)正义链包含SEQ ID NO.788所示的序列,和反义链包含SEQ ID NO.997所示的序列;(38) the sense strand comprises the sequence shown in SEQ ID NO. 788, and the antisense strand comprises the sequence shown in SEQ ID NO. 997;
(39)正义链包含SEQ ID NO.789所示的序列,和反义链包含SEQ ID NO.998所示的序列;(39) the sense strand comprises the sequence shown in SEQ ID NO. 789, and the antisense strand comprises the sequence shown in SEQ ID NO. 998;
(40)正义链包含SEQ ID NO.786所示的序列,和反义链包含SEQ ID NO.999所示的序列;(40) the sense strand comprises the sequence shown in SEQ ID NO. 786, and the antisense strand comprises the sequence shown in SEQ ID NO. 999;
(41)正义链包含SEQ ID NO.756所示的序列,和反义链包含SEQ ID NO.996所示的序列;(41) the sense strand comprises the sequence shown in SEQ ID NO. 756, and the antisense strand comprises the sequence shown in SEQ ID NO. 996;
(42)正义链包含SEQ ID NO.762所示的序列,和反义链包含SEQ ID NO.1000所示的序列;(42) the sense strand comprises the sequence shown in SEQ ID NO. 762, and the antisense strand comprises the sequence shown in SEQ ID NO. 1000;
(43)正义链包含SEQ ID NO.773所示的序列,和反义链包含SEQ ID NO.1001所示的序列;(43) the sense strand comprises the sequence shown in SEQ ID NO. 773, and the antisense strand comprises the sequence shown in SEQ ID NO. 1001;
(44)正义链包含SEQ ID NO.763所示的序列,和反义链包含SEQ ID NO.1013所示的序列;(44) the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 1013;
(45)正义链包含SEQ ID NO.788所示的序列,和反义链包含SEQ ID NO.1017所示的序列;(45) the sense strand comprises the sequence shown in SEQ ID NO. 788, and the antisense strand comprises the sequence shown in SEQ ID NO. 1017;
(46)正义链包含SEQ ID NO.789所示的序列,和反义链包含SEQ ID NO.1018所示的序列;(46) the sense strand comprises the sequence shown in SEQ ID NO. 789, and the antisense strand comprises the sequence shown in SEQ ID NO. 1018;
(47)正义链包含SEQ ID NO.763所示的序列,和反义链包含SEQ ID NO.1021所示的序列;(47) the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 1021;
(48)正义链包含SEQ ID NO.789所示的序列,和反义链包含SEQ ID NO.985所示的序列;(48) the sense strand comprises the sequence shown in SEQ ID NO. 789, and the antisense strand comprises the sequence shown in SEQ ID NO. 985;
其中每个链在长度上独立地为19至25个核苷酸。wherein each strand is independently 19 to 25 nucleotides in length.
在本公开的一些实施方案中,寡核苷酸包含选自下述正义链和反义链组合中的任一:In some embodiments of the present disclosure, the oligonucleotide comprises any one selected from the following sense and antisense strand combinations:
(1)正义链包含SEQ ID NO.588所示的序列,和反义链包含SEQ ID NO.793所示的序列;(1) the sense strand comprises the sequence shown in SEQ ID NO. 588, and the antisense strand comprises the sequence shown in SEQ ID NO. 793;
(2)正义链包含SEQ ID NO.592所示的序列,和反义链包含SEQ ID NO.797所示的序列;(2) the sense strand comprises the sequence shown in SEQ ID NO. 592, and the antisense strand comprises the sequence shown in SEQ ID NO. 797;
(3)正义链包含SEQ ID NO.595所示的序列,和反义链包含SEQ ID NO.800所示的序列;(3) the sense strand comprises the sequence shown in SEQ ID NO. 595, and the antisense strand comprises the sequence shown in SEQ ID NO. 800;
(4)正义链包含SEQ ID NO.599所示的序列,和反义链包含SEQ ID NO.804所示的序列;(4) the sense strand comprises the sequence shown in SEQ ID NO. 599, and the antisense strand comprises the sequence shown in SEQ ID NO. 804;
(5)正义链包含SEQ ID NO.601所示的序列,和反义链包含SEQ ID NO.806所示的序列;(5) the sense strand comprises the sequence shown in SEQ ID NO. 601, and the antisense strand comprises the sequence shown in SEQ ID NO. 806;
(6)正义链包含SEQ ID NO.763所示的序列,和反义链包含SEQ ID NO.995所示的序列;(6) the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 995;
(7)正义链包含SEQ ID NO.752所示的序列,和反义链包含SEQ ID NO.996所示的序列;(7) the sense strand comprises the sequence shown in SEQ ID NO. 752, and the antisense strand comprises the sequence shown in SEQ ID NO. 996;
(8)正义链包含SEQ ID NO.788所示的序列,和反义链包含SEQ ID NO.997所示的序列;(8) the sense strand comprises the sequence shown in SEQ ID NO. 788, and the antisense strand comprises the sequence shown in SEQ ID NO. 997;
(9)正义链包含SEQ ID NO.789所示的序列,和反义链包含SEQ ID NO.998所示的序列;(9) the sense strand comprises the sequence shown in SEQ ID NO. 789, and the antisense strand comprises the sequence shown in SEQ ID NO. 998;
(10)正义链包含SEQ ID NO.786所示的序列,和反义链包含SEQ ID NO.999所示的序列;(10) the sense strand comprises the sequence shown in SEQ ID NO. 786, and the antisense strand comprises the sequence shown in SEQ ID NO. 999;
(11)正义链包含SEQ ID NO.752所示的序列,和反义链包含SEQ ID NO.987所示的序列;(11) the sense strand comprises the sequence shown in SEQ ID NO. 752, and the antisense strand comprises the sequence shown in SEQ ID NO. 987;
(12)正义链包含SEQ ID NO.786所示的序列,和反义链包含SEQ ID NO.993所示的序列。(12) The positive strand comprises the sequence shown in SEQ ID NO.786, and the antisense strand comprises the sequence shown in SEQ ID NO.993.
(13)正义链包含SEQ ID NO.788所示的序列,和反义链包含SEQ ID NO.1017所示的序列;(13) the sense strand comprises the sequence shown in SEQ ID NO. 788, and the antisense strand comprises the sequence shown in SEQ ID NO. 1017;
(14)正义链包含SEQ ID NO.789所示的序列,和反义链包含SEQ ID NO.1018所示的序列;(14) the sense strand comprises the sequence shown in SEQ ID NO. 789, and the antisense strand comprises the sequence shown in SEQ ID NO. 1018;
(15)正义链包含SEQ ID NO.763所示的序列,和反义链包含SEQ ID NO.1021所示的序列;(15) the sense strand comprises the sequence shown in SEQ ID NO. 763, and the antisense strand comprises the sequence shown in SEQ ID NO. 1021;
(16)正义链包含SEQ ID NO.789所示的序列,和反义链包含SEQ ID NO.985所示的序列。(16) The sense strand comprises the sequence shown in SEQ ID NO.789, and the antisense strand comprises the sequence shown in SEQ ID NO.985.
本公开还提供了一种用于抑制补体成分C3表达的缀合物或其药学上可接受的盐,其包含:(i)前述寡核苷酸或其药学上可接受的盐,及(ii)与前述寡核苷酸或其药学上可接受的盐缀合的配体,其中,寡核苷酸的至少一个核苷酸缀合至一个靶向配体。在一些实施方案中,前述寡核苷酸或其盐的至少一个核苷酸缀合至一个靶向配体,形成siRNA缀合物。前述siRNA缀合物含有上述siRNA以及缀合连接至该siRNA的缀合基团。术语“寡核苷酸盐”是指盐形式的寡核苷酸化合物。寡核苷酸盐包括寡核苷酸缀合化合物的盐以及未缀合的寡核苷酸化合物的盐。寡核苷酸盐有利地以固体粉末形式存在。The present disclosure also provides a conjugate for inhibiting the expression of complement component C3 or a pharmaceutically acceptable salt thereof, which comprises: (i) the aforementioned oligonucleotide or a pharmaceutically acceptable salt thereof, and (ii) a ligand conjugated to the aforementioned oligonucleotide or a pharmaceutically acceptable salt thereof, wherein at least one nucleotide of the oligonucleotide is conjugated to a targeting ligand. In some embodiments, at least one nucleotide of the aforementioned oligonucleotide or a salt thereof is conjugated to a targeting ligand to form an siRNA conjugate. The aforementioned siRNA conjugate contains the aforementioned siRNA and a conjugated group connected to the siRNA. The term "oligonucleotide salt" refers to an oligonucleotide compound in the form of a salt. Oligonucleotide salts include salts of oligonucleotide conjugated compounds and salts of unconjugated oligonucleotide compounds. Oligonucleotide salts are advantageously present in the form of solid powder.
一般来说,缀合基团包含药学上可接受的至少一个靶向配体和任选的接头(linker),并且,siRNA、接头和靶向配体依次连接。靶向基团可以是siRNA给药领域常规使用的配体,例如WO2009082607A2中描述的各种配体,以引用的方式将其全部公开内容并入本文。在一些实施方案中,靶向配体为2-4个。siRNA分子可以非共价或共价缀合至缀合基团,例如可以共价缀合至缀合基团。siRNA与缀合基团的缀合位点可以在siRNA正义链或反义链的3'端或5'端,还可以在siRNA的内部序列中。在一些实施方案中,siRNA与缀合基团的缀合位点在siRNA正义链的3'末端或5'末端。在一些实施方案中,siRNA与缀合基团的缀合位点在siRNA反义链的3'末端或5'末端。在一些优选的实施方案中,siRNA与缀合基团的缀合位点在siRNA正义链的3'末端。In general, the conjugated group comprises at least one pharmaceutically acceptable targeting ligand and an optional linker, and the siRNA, linker and targeting ligand are connected in sequence. The targeting group can be a ligand conventionally used in the field of siRNA administration, such as the various ligands described in WO2009082607A2, the entire disclosure of which is incorporated herein by reference. In some embodiments, the targeting ligand is 2-4. The siRNA molecule can be non-covalently or covalently conjugated to the conjugated group, for example, it can be covalently conjugated to the conjugated group. The conjugation site of the siRNA and the conjugated group can be at the 3' end or 5' end of the siRNA sense strand or antisense strand, or can be in the internal sequence of the siRNA. In some embodiments, the conjugation site of the siRNA and the conjugated group is at the 3' end or 5' end of the siRNA sense strand. In some embodiments, the conjugation site of the siRNA and the conjugated group is at the 3' end or 5' end of the siRNA antisense strand. In some preferred embodiments, the conjugation site of the siRNA and the conjugated group is at the 3' end of the siRNA sense strand.
在一些实施方案中,靶向配体包含脱唾液酸糖蛋白受体配体。在一些实施方案中,脱唾液酸糖蛋白受体配体包括一种或多种半乳糖衍生物或由其组成。如本公开所用,术语“半乳糖衍生物”包括半乳糖和对脱唾液酸糖蛋白受体的亲和力等于或大于半乳糖的亲和力的乳糖衍生物。半乳糖衍生物包括但不限于:半乳糖、半乳糖胺、N-甲酰半乳糖胺、N-乙酰基半乳糖胺、N-丙酰基-半乳糖胺、N-正丁酰基-半乳糖胺和N-异丁酰基半乳糖胺。可用于寡核苷酸和其他分子在体内靶向肝脏的半乳糖衍生物和半乳糖衍生物簇是本领域已知的。半乳糖衍生物已被用于通过其与肝细胞表面上表达的脱唾液酸糖蛋白受体(ASGPR)的结合而在体内将分子靶向肝细胞。ASGPR配体与ASGPR(s)的结合有利于细胞特异性靶向肝细胞以及内吞分子进入肝细胞。ASGPR配体可以是单体(例如,具有单个半乳糖衍生物)或多聚体(例如,具有多个半乳糖衍生物)。可使用本领域已知的方法将半乳糖衍生物或半乳糖衍生物簇连接至siRNA的3'端或5'端。In some embodiments, the targeting ligand comprises an asialoglycoprotein receptor ligand. In some embodiments, the asialoglycoprotein receptor ligand comprises or consists of one or more galactose derivatives. As used herein, the term "galactose derivative" includes galactose and lactose derivatives having an affinity for the asialoglycoprotein receptor equal to or greater than that of galactose. Galactose derivatives include, but are not limited to, galactose, galactosamine, N-formylgalactosamine, N-acetylgalactosamine, N-propionyl-galactosamine, N-n-butyryl-galactosamine, and N-isobutyrylgalactosamine. Galactose derivatives and clusters of galactose derivatives that can be used to target oligonucleotides and other molecules to the liver in vivo are known in the art. Galactose derivatives have been used to target molecules to hepatocytes in vivo by binding to the asialoglycoprotein receptor (ASGPR) expressed on the surface of hepatocytes. Binding of ASGPR ligands to ASGPR(s) facilitates cell-specific targeting to hepatocytes and endocytosis of molecules into hepatocytes. ASGPR ligands can be monomeric (eg, having a single galactose derivative) or polymeric (eg, having multiple galactose derivatives). Galactose derivatives or clusters of galactose derivatives can be linked to the 3' or 5' end of the siRNA using methods known in the art.
在一些实施方案中,siRNA缀合物中药学上可接受的靶向配体可以是半乳糖或N-乙酰基半乳糖胺(GalNAc),其中,半乳糖或N-乙酰基半乳糖胺分子可以是一价、二价、三价、四价。应当理解的是,所述的一价、二价、三价、四价分别指siRNA分子与含有作为靶向配体的半乳糖或N-乙酰基半乳糖胺分子的缀合基团形成siRNA缀合物后,该siRNA缀合物中siRNA分子与半乳糖或N-乙酰基半乳糖胺分子的摩尔比为1:1、1:2、1:3或1:4。在一些实施方式中,药学上可接受的靶向配体是N-乙酰基半乳糖胺。在在一些实施方案中,当本公开所述的siRNA与含有N-乙酰基半乳糖胺的缀合基团缀合时,N-乙酰基半乳糖胺分子是三价或四价。在一些实施方案中,当本公开所述的siRNA与含有N-乙酰基半乳糖胺的缀合基团缀合时,N-乙酰基半乳糖胺分子是三价。In some embodiments, the pharmaceutically acceptable targeting ligand in the siRNA conjugate can be galactose or N-acetylgalactosamine (GalNAc), wherein the galactose or N-acetylgalactosamine molecule can be monovalent, divalent, trivalent, or tetravalent. It should be understood that the monovalent, divalent, trivalent, and tetravalent refer to the formation of an siRNA conjugate by a conjugated group containing a galactose or N-acetylgalactosamine molecule as a targeting ligand, and the molar ratio of the siRNA molecule to the galactose or N-acetylgalactosamine molecule in the siRNA conjugate is 1: 1, 1: 2, 1: 3, or 1: 4. In some embodiments, the pharmaceutically acceptable targeting ligand is N-acetylgalactosamine. In some embodiments, when the siRNA described in the present disclosure is conjugated to a conjugated group containing N-acetylgalactosamine, the N-acetylgalactosamine molecule is trivalent or tetravalent. In some embodiments, when the siRNA described herein is conjugated to a conjugation group containing N-acetylgalactosamine, the N-acetylgalactosamine molecule is trivalent.
在本公开的一些实施方案中,靶向配体包含碳水化合物、氨基糖、胆固醇、多肽或脂质。In some embodiments of the present disclosure, the targeting ligand comprises a carbohydrate, an amino sugar, cholesterol, a polypeptide, or a lipid.
在本公开的一些实施方案中,靶向配体包含N-乙酰基半乳糖胺(GalNAc)部分。In some embodiments of the present disclosure, the targeting ligand comprises an N-acetylgalactosamine (GalNAc) moiety.
在本公开的一些实施方案中,GalNac部分是单价GalNAc部分、二价GalNAc部分、三价GalNAc部分或四价GalNAc部分。In some embodiments of the present disclosure, the GalNac moiety is a monovalent GalNAc moiety, a divalent GalNAc moiety, a trivalent GalNAc moiety, or a tetravalent GalNAc moiety.
在本公开的一些实施方案中,靶向配体为L96;
In some embodiments of the present disclosure, the targeting ligand is L96;
在本公开方法的一些实施方式中,补体成分C3基因的表达抑制至少50%、55%、60%、65%、70%、75%、80%、85%、90%或95%,或者达到检测水平以下。在优选实施方式中,补体成分C3的表达抑制至少70%。还应当理解的是,抑制补体成分C3在某些组织(例如,肝脏)中的表达,而不会显著抑制其他组织(例如,脑)中的表达可能是所需的。在优选实施方式中,表达水平使用实施例2中提供的测定方法用50nM、10nM和1nM siRNA浓度在适宜的物种匹配细胞系中确定。In some embodiments of the disclosed methods, expression of the complement component C3 gene is inhibited by at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90% or 95%, or to below the level of detection. In a preferred embodiment, expression of complement component C3 is inhibited by at least 70%. It will also be appreciated that it may be desirable to inhibit the expression of complement component C3 in certain tissues (e.g., liver) without significantly inhibiting expression in other tissues (e.g., brain). In a preferred embodiment, expression levels are determined using the assay provided in Example 2 using 50 nM, 10 nM and 1 nM siRNA concentrations in an appropriate species-matched cell line.
在某些实施方式中,体内表达的抑制通过敲低表达人类基因的啮齿动物中的人类基团来确定,例如,表达人靶基因(即,补体成分C3)的AAV感染的小鼠,例如,当作为单剂量施用时,例如以3mg/kg皮下注射后C3表达的最低点来确认对人类基因的抑制效果。当人基因和模型动物基因的核酸序列足够接近以使得人RNAi提供模型动物基因有效敲低时,此类系统是有用的。使用实施例2中提供的PCR方法确定肝脏中的RNA表达。In certain embodiments, inhibition of in vivo expression is determined by knocking down human genes in rodents expressing human genes, for example, AAV-infected mice expressing human target genes (i.e., complement component C3), for example, when administered as a single dose, for example, at the lowest point of C3 expression after subcutaneous injection at 3 mg/kg to confirm the inhibitory effect on the human gene. Such systems are useful when the nucleic acid sequences of the human gene and the model animal gene are close enough to allow human RNAi to effectively knock down the model animal gene. RNA expression in the liver is determined using the PCR method provided in Example 2.
补体成分C3基因表达的抑制可以由细胞系(此类细胞可以在例如来源于受试者的样品中存在)表达的mRNA的量的减少表示,在细胞或细胞群中转录了补体成分C3基因并且其是被处理的(例如,通过使一个或多个细胞与本公开的RNAi接触,或者通过向其中存在或曾经存在细胞的受试者施用本公开的RNAi),以使得与同细胞系基本上相同但未被处理的细胞系(未使用RNAi处理或者未使用靶向目标基因的RNAi处理的对照细胞)相比补体成分C3基因的表达抑制。在优选实施方式中,抑制通过实施例2中提供的方法在物种匹配细胞系中使用10nM siRNA浓度评估抑制,使用下述公式,由所处理的细胞中的mRNA表达量相对于对照细胞中的mRNA水平的2^-△△CT表示:
△CT=CTC3-CTGAPDH
△△CT=△CT处理细胞-△CT对照细胞
mRNA水平=2^-△△CTInhibition of complement component C3 gene expression can be represented by a decrease in the amount of mRNA expressed by a cell line (such cells can be present, for example, in a sample derived from a subject) in which the complement component C3 gene is transcribed and which is treated (e.g., by contacting one or more cells with an RNAi of the disclosure, or by administering an RNAi of the disclosure to a subject in which cells are or were present) such that expression of the complement component C3 gene is inhibited compared to a substantially identical cell line but untreated (control cells not treated with RNAi or not treated with RNAi targeting the target gene). In a preferred embodiment, inhibition is assessed using a 10 nM siRNA concentration in a species-matched cell line using the method provided in Example 2 and is represented by the mRNA expression level in the treated cells relative to the mRNA level in the control cells using the following formula:
△CT=CT C3 -CT GAPDH
△△CT=△CT treated cells- △CT control cells
mRNA level = 2^-△△CT
在其他实施方式中,补体成分C3基因表达的抑制可以根据与补体成分C3基因表达功能相关的参数的降低来评估,例如,来自受试者的血液或血清中的补体成分C3蛋白水平。补体成分C3基因沉默可以在任何表达补体成分C3的细胞中确定,无论是内源的还是来自表达构建体的异源的,并且通过本领域公知的任何测定。In other embodiments, inhibition of complement component C3 gene expression can be assessed based on a reduction in a parameter functionally associated with complement component C3 gene expression, e.g., complement component C3 protein levels in blood or serum from a subject. Complement component C3 gene silencing can be determined in any cell expressing complement component C3, whether endogenous or heterologous from an expression construct, and by any assay known in the art.
补体成分C3蛋白表达的抑制可以通过由细胞或细胞群或者在受试者样品(例如,在来自受试者的血液样品中的蛋白水平)中表达的补体成分C3蛋白水平或分泌性荧光素酶水平的降低来体现。如上所述,为评估mRNA抑制,在处理的细胞或细胞群中蛋白表达水平的抑制可以类似地表示为对照细胞或细胞群中蛋白水平的百分比,或者在受试者样品(例如,来自其的血液或血清)中蛋白水平的变化,抑制通过实施例3或实施例4中提供的方法在评估抑制,使用下述公式,由所处理的样本中(例如,来自其的血液或血清)的C3表达量或Gluc表达量相对于对照细胞中的C3表达量或Gluc表达量的百分比表示。
mRNA的抑制百分比=(蛋白表达量处理细胞-蛋白表达量对照细胞)/蛋白表达量对照细胞*100%Inhibition of complement component C3 protein expression can be demonstrated by a decrease in the level of complement component C3 protein or secreted luciferase expressed by a cell or cell population or in a subject sample (e.g., protein levels in a blood sample from a subject). As described above, to assess mRNA inhibition, inhibition of protein expression levels in treated cells or cell populations can be similarly expressed as a percentage of protein levels in control cells or cell populations, or as a change in protein levels in a subject sample (e.g., blood or serum thereof), inhibition is assessed by the methods provided in Example 3 or Example 4, using the following formula, expressed as a percentage of C3 expression or Gluc expression in the treated sample (e.g., blood or serum thereof) relative to C3 expression or Gluc expression in the control cells.
Percentage of mRNA inhibition = (protein expression level in treated cells - protein expression level in control cells ) / protein expression level in control cells * 100%
可用于评估补体成分C3基因表达的抑制的对照细胞、细胞群或受试者样品包括尚未与本公开的RNAi剂接触的细胞、细胞群或受试者样品。例如,在用RNAi剂处理受试者或者适当匹配的群对照之前,对照细胞、细胞系或者受试者样品可以来自个体受试者(例如,人或动物受试者)。Control cells, cell populations, or subject samples that can be used to assess inhibition of complement component C3 gene expression include cells, cell populations, or subject samples that have not been contacted with the RNAi agents of the present disclosure. For example, control cells, cell lines, or subject samples can be derived from individual subjects (e.g., human or animal subjects) prior to treatment of the subject or an appropriately matched group control with an RNAi agent.
在本公开方法的一些实施方式中,将RNAi施用于受试者,以使得将RNAi递送至受试者内的特定位点。补体成分C3表达的抑制可以通过测量来自受试者特定部位(例如,肝脏或血液)的流体或组织的样品中补体成分C3mRNA或补体成分C3蛋白或融合分泌型荧光素酶的水平或变化来评估。In some embodiments of the disclosed methods, RNAi is administered to a subject so that the RNAi is delivered to a specific site within the subject. The inhibition of complement component C3 expression can be assessed by measuring the level or change of complement component C3 mRNA or complement component C3 protein or fusion secretory luciferase in a sample of fluid or tissue from a subject's specific site (e.g., liver or blood).
本公开还提供了使用本公开的RNAi或包含本公开的RNAi的组合物以抑制补体成分C3表达的方法,从而预防或治疗补体成分C3相关病症,例如,冷凝集素病(CAD),温性自身免疫性溶血性贫血,和阵发性夜间血红蛋白尿(PNH),狼疮肾炎(LN),大疱性类天疱疮,天疱疮,例如寻常型天疱疮(PV)和叶型天疱疮(PF),以及C3肾小球病。The present disclosure also provides methods of using the RNAi of the present disclosure or compositions comprising the RNAi of the present disclosure to inhibit the expression of complement component C3, thereby preventing or treating complement component C3-related disorders, e.g., cold agglutinin disease (CAD), warm autoimmune hemolytic anemia, and paroxysmal nocturnal hemoglobinuria (PNH), lupus nephritis (LN), bullous pemphigoid, pemphigus, e.g., pemphigus vulgaris (PV) and pemphigus foliaceus (PF), and C3 glomerulopathy.
适于使用本公开的方法治疗的细胞可以是表达补体成分C3基因的任何细胞,例如,肝细胞、脑细胞、胆囊细胞、心脏细胞或肾细胞,但优选肝细胞。适于在本公开的方法中使用的细胞可以是哺乳动物细胞,例如,灵长类细胞(如人细胞,包括在嵌合非人动物中的人细胞,或非人灵长类细胞,例如,猴细胞或黑猩猩细胞)或非灵长类细胞。在某些实施方式中,细胞是人细胞,例如,人肝细胞。在本公开方法中,补体成分C3在细胞中的表达抑制至少50%、55%、60%、65%、70%、75%、80%、85%、90%或95%,或者低于测定的检测水平。Cells suitable for treatment using the methods of the present disclosure can be any cells that express the complement component C3 gene, for example, liver cells, brain cells, gallbladder cells, heart cells or kidney cells, but preferably liver cells. Cells suitable for use in the methods of the present disclosure can be mammalian cells, for example, primate cells (such as human cells, including human cells in chimeric non-human animals, or non-human primate cells, for example, monkey cells or chimpanzee cells) or non-primate cells. In certain embodiments, the cells are human cells, for example, human liver cells. In the methods of the present disclosure, the expression of complement component C3 in the cells is inhibited by at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90% or 95%, or is below the detection level of the assay.
本公开的体内方法可以包括向受试者施用包含RNAi的组合物,其中RNAi包含与RNAi剂施用的哺乳动物的补体成分C3基因的RNA转录物的至少一部分互补的核苷酸序列。组合物可以通过本领域公知的任何方式施用,包括但不限于口服、腹膜内或肠胃外途径,包括颅内(例如,脑室内、实质内和鞘内)、静脉内、肌内、皮下、透皮、气道(气雾剂)、鼻腔、直肠和局部(包括口腔和舌下)施用。在某些实施方式中,通过静脉内输注或注射施用组合物。在某些实施方式中,通过皮下施用组合物。在某些实施方式中,通过肌内注射施用组合物。The in vivo method of the present disclosure can include administering to the subject a composition comprising RNAi, wherein the RNAi comprises a nucleotide sequence complementary to at least a portion of the RNA transcript of the complement component C3 gene of the mammal administered with the RNAi agent. The composition can be administered by any means known in the art, including but not limited to oral, intraperitoneal or parenteral routes, including intracranial (e.g., intraventricular, intraparenchymal and intrathecal), intravenous, intramuscular, subcutaneous, transdermal, airway (aerosol), nasal cavity, rectal and topical (including oral and sublingual) administration. In certain embodiments, the composition is administered by intravenous infusion or injection. In certain embodiments, the composition is administered by subcutaneous administration. In certain embodiments, the composition is administered by intramuscular injection.
在一个方面中,本公开还提供了用于抑制哺乳动物补体成分C3基因表达的方法。所述方法包括向哺乳动物施用寡核苷酸或其药学上可接受的盐、其缀合物或其盐或其组合物。所述寡核苷酸为双链RNA(dsRNA),所述dsRNA靶向哺乳动物细胞中的补体成分C3基因,并维持哺乳动物足够的时间以获得补体成分C3基因的mRNA转录物的降解,从而抑制细胞中补体成分C3蛋白的表达。基因表达的降低可以通过本领域公知的任何方法和通过方法,例如,本文所述的qRT-PCR,例如,在实施例2中评估。在蛋白产物中的减少可以通过本领域公知的任何方法(例如,ELISA)评估。在其他实施方式中,血液样品作为受试者样品,用于监测补体成分C3蛋白表达的降低。In one aspect, the present disclosure also provides a method for inhibiting the expression of complement component C3 gene in mammals. The method comprises administering an oligonucleotide or a pharmaceutically acceptable salt thereof, a conjugate thereof, a salt thereof, or a composition thereof to a mammal. The oligonucleotide is a double-stranded RNA (dsRNA) that targets the complement component C3 gene in mammalian cells and maintains the mammal for a sufficient time to obtain degradation of the mRNA transcript of the complement component C3 gene, thereby inhibiting the expression of the complement component C3 protein in the cell. The reduction in gene expression can be by any method known in the art and by methods, for example, qRT-PCR as described herein, for example, as assessed in Example 2. The reduction in protein product can be assessed by any method known in the art (e.g., ELISA). In other embodiments, a blood sample is used as a subject sample to monitor the reduction in complement component C3 protein expression.
本公开还提供了在有需要的受试者中治疗的方法,例如,诊断为患有补体成分C3相关病症的受试者,如冷凝集素病(CAD),温性自身免疫性溶血性贫血,和阵发性夜间血红蛋白尿(PNH),狼疮肾炎(LN),大疱性类天疱疮,天疱疮,例如寻常型天疱疮(PV)和叶型天疱疮(PF),或C3肾小球病。The present disclosure also provides methods of treating in a subject in need thereof, e.g., a subject diagnosed with a complement component C3-associated disorder, such as cold agglutinin disease (CAD), warm autoimmune hemolytic anemia, and paroxysmal nocturnal hemoglobinuria (PNH), lupus nephritis (LN), bullous pemphigoid, pemphigus, e.g., pemphigus vulgaris (PV) and pemphigus foliaceus (PF), or C3 glomerulopathy.
在一个实施方式中,补体成分C3相关疾病是冷凝集素病(CAD)。CAD是一种自身免疫性补体成分C3诱导的溶血性贫血,其中冷暴露会导致与身体寒冷部位红细胞(RBC)凝集相关的临床症状(例如,网状青斑或肢端发绀)和溶血性贫血。冷凝集素是IgM抗体,可在低于正常核心体温的温度下识别红细胞(RBC)上的抗原。其可以引起RBC凝集、补体激活和血管外溶血,导致贫血,通常没有血红蛋白尿。CAD可以是原发性CAD(也成为特发性CAD)或继发性CAD。在患有原发性CAD的受试者中,冷凝集素会在没有潜在疾病的情况下引起RBC凝集。和血管外溶血。在患有继发性CAD(也称为冷凝集素综合征,或CAS)的受试者中,冷凝集素出现在潜在疾病的背景下,如病毒干扰、自身免疫性疾病或淋巴恶性肿瘤(参见,例如,Berentsen(2015)Transfus Med Hemother 42:303-310)。In one embodiment, the complement component C3 related disease is cold agglutinin disease (CAD). CAD is an autoimmune complement component C3-induced hemolytic anemia, in which cold exposure can cause clinical symptoms (e.g., livedo reticularis or acrocyanosis) and hemolytic anemia associated with red blood cell (RBC) agglutination in cold parts of the body. Cold agglutinins are IgM antibodies that can recognize antigens on red blood cells (RBC) at temperatures below normal core body temperature. They can cause RBC agglutination, complement activation, and extravascular hemolysis, leading to anemia, usually without hemoglobinuria. CAD can be primary CAD (also known as idiopathic CAD) or secondary CAD. In subjects suffering from primary CAD, cold agglutinins can cause RBC agglutination in the absence of underlying disease. And extravascular hemolysis. In subjects with secondary CAD (also known as cold agglutinin syndrome, or CAS), cold agglutinins appear in the context of an underlying disease, such as viral interference, autoimmune disease, or lymphoid malignancy (see, e.g., Berentsen (2015) Transfus Med Hemother 42:303-310).
在一个实施方式中,补体成分C3相关疾病是温性自身免疫性溶血性贫血。温性自身免疫性溶血性贫血是一种自身免疫性补体成分C3诱导的溶血性贫血,其中红细胞(RBC)在等于或高于正常体温的温度下在身体部位凝集,以及由于IgG抗体导向针对血型抗原激活补体系统,导致溶血性贫血。温性自身免疫性溶血性贫血是最常见的自身免疫性溶血性贫血类型,约占所有成人病例的70%至80%,以及约占儿童病例的50%。大约一半的温性自身免疫性溶血性贫血病例是原发性的,因为找不到特定病因,而其余病例则被认为是继发于淋巴组织增生综合征;恶性疾病,包括慢性淋巴细胞白血病(CLL)、非霍奇金氏淋巴瘤和实体瘤;风湿性疾病,特别是系统性红斑狼疮;感染(主要是病毒);药物;频繁使用头孢菌素和哌拉西林;或者既往输血或移植(参见,例如,Berentsen(2015)Transfus Med Hemother 42:303-310)。In one embodiment, the complement component C3-related disease is warm autoimmune hemolytic anemia. Warm autoimmune hemolytic anemia is an autoimmune complement component C3-induced hemolytic anemia in which red blood cells (RBCs) agglutinate at body sites at temperatures equal to or higher than normal body temperature and the complement system is activated due to IgG antibodies directed against blood group antigens, resulting in hemolytic anemia. Warm autoimmune hemolytic anemia is the most common type of autoimmune hemolytic anemia, accounting for approximately 70% to 80% of all adult cases and approximately 50% of pediatric cases. Approximately half of cases of warm autoimmune hemolytic anemia are primary because no specific cause can be found, while the remainder are thought to be secondary to lymphoproliferative syndromes; malignant disorders, including chronic lymphocytic leukemia (CLL), non-Hodgkin's lymphoma, and solid tumors; rheumatic diseases, particularly systemic lupus erythematosus; infections (primarily viral); drugs; frequent use of cephalosporins and piperacillin; or previous transfusion or transplantation (see, e.g., Berentsen (2015) Transfus Med Hemother 42:303-310).
在一个实施方式中,补体成分C3相关疾病是阵发性夜间血红蛋白尿(PNH)。PNH可以是经典PNH或者在另一种骨髓衰竭综合征和/或骨髓增生异常综合征(MDS)情况下的PNH,例如,血细胞减少。PNH是一种获得性自身免疫性疾病,可导致过早死亡和血细胞生成受损,其特征是补体介导的溶血性贫血、血栓形成倾向和骨髓衰竭(参见,例如,Risitano(2013)Adv Exp Med Biol 735:155)。In one embodiment, the complement component C3-associated disease is paroxysmal nocturnal hemoglobinuria (PNH). PNH can be classic PNH or PNH in the context of another bone marrow failure syndrome and/or myelodysplastic syndrome (MDS), e.g., cytopenias. PNH is an acquired autoimmune disease that can lead to premature death and impaired hematopoiesis and is characterized by complement-mediated hemolytic anemia, thrombophilia, and bone marrow failure (see, e.g., Risitano (2013) Adv Exp Med Biol 735:155).
在一个实施方式中,补体成分C3相关疾病是狼疮性肾炎(LN),即I类至VI类狼疮性肾炎中的任何一种。LN是一种由系统性红斑狼疮(SLE)引起的肾小球肾炎。狼疮性肾炎的发生是由于免疫复合物沉积在任何或所有肾区室,包括肾小球、肾小管和间质。IgG是最常见的抗体,但也可见IgM和IgA。这些自身抗体导致经典和替代补体途径的激活,因此可以在活检中发现C1、C3和备解素(properdin)。In one embodiment, the complement component C3-associated disease is lupus nephritis (LN), any of class I to class VI lupus nephritis. LN is a glomerulonephritis caused by systemic lupus erythematosus (SLE). Lupus nephritis occurs due to the deposition of immune complexes in any or all renal compartments, including the glomeruli, tubules, and interstitium. IgG is the most common antibody, but IgM and IgA can also be seen. These autoantibodies lead to activation of the classical and alternative complement pathways, and therefore C1, C3, and properdin can be found in biopsies.
在一个实施方式中,补体成分C3相关疾病是大疱性类天疱疮。大疱性类天疱疮是一种由针对XVII型胶原蛋白(COL17)的自身抗糖引起的自身免疫性水疱病,可激活补体并随后在真皮/表皮交界处募集炎症细胞。大疱性类天疱疮是最常见的自身免疫性疱性病症,其特征是在紧绷的水疱伴发痒的荨麻疹性红斑和遍布全身的斑块。In one embodiment, the complement component C3-associated disease is bullous pemphigoid. Bullous pemphigoid is an autoimmune blistering disease caused by autoantibodies against type XVII collagen (COL17), which activates complement and subsequently recruits inflammatory cells at the dermal/epidermal junction. Bullous pemphigoid is the most common autoimmune blistering disorder and is characterized by tight blisters accompanied by itchy urticarial erythema and plaques throughout the body.
在一个实施方式中,补体成分C3相关疾病是天疱疮,例如,寻常型天疱疮(PV)和叶型天疱疮(PF)。天疱疮是一组罕见的慢性疱性疾病,其特征是针对多种桥粒跨膜糖蛋白的IgG自身抗体以及IgG和C3c的细胞内沉积。寻常型天疱疮患者通常表现为口腔粘膜病变,随后皮肤受累,且自身抗体针对上皮粘附蛋白桥粒芯蛋白3和/或桥粒芯蛋白1。在叶型天疱疮中,病变局限于皮肤,不涉及粘膜,自身抗体针对桥粒芯蛋白1。在一个实施方式中,天疱疮是寻常型天疱疮(PV)。在另一个实施方式中,天疱疮是叶型天疱疮(PF)。In one embodiment, the complement component C3 related disease is pemphigus, for example, pemphigus vulgaris (PV) and pemphigus foliaceus (PF). Pemphigus is a group of rare chronic herpes diseases characterized by IgG autoantibodies and intracellular deposition of IgG and C3c to multiple desmosomal transmembrane glycoproteins. Pemphigus vulgaris patients typically present with oral mucosal lesions, followed by skin involvement, and autoantibodies to epithelial adhesion proteins desmoglein 3 and/or desmoglein 1. In pemphigus foliaceus, the lesions are confined to the skin, do not involve mucosa, and autoantibodies are to desmoglein 1. In one embodiment, pemphigus is pemphigus vulgaris (PV). In another embodiment, pemphigus is pemphigus foliaceus (PF).
在一个实施方式中,补体成分C3相关疾病是C3肾小球病。C3肾小球病的特征是替代补体级联反应的激活和补体成分C3的沉积,而肾脏的肾小球中没有任何免疫球蛋白沉积。In one embodiment, the complement component C3-associated disease is C3 glomerulopathy. C3 glomerulopathy is characterized by activation of the alternative complement cascade and deposition of complement component C3 without any immunoglobulin deposition in the glomeruli of the kidney.
本公开的RNAi可以作为“游离RNAi”施用。在没有药物组合物的情况下施用游离RNAi。裸RNAi可以在适宜的缓冲溶液中。缓冲溶液可以包含乙酸盐、柠檬酸盐、乳酸盐、酒石酸盐、碳酸盐或磷酸盐,或其任何组合。在一个实施方式中,缓冲溶液是磷酸盐缓冲盐水(PBS)。可以调节含有RNAi的缓冲溶液的pH值和渗透压,使其适合施用于受试者。The RNAi disclosed herein can be administered as "free RNAi". Free RNAi is administered without a pharmaceutical composition. Naked RNAi can be in a suitable buffer solution. The buffer solution can contain acetate, citrate, lactate, tartrate, carbonate or phosphate, or any combination thereof. In one embodiment, the buffer solution is phosphate buffered saline (PBS). The pH and osmotic pressure of the buffer solution containing RNAi can be adjusted to make it suitable for administration to a subject.
根据本公开的方法施用RNAi可导致补体成分C3相关病症的预防或治疗,例如,冷凝集素病(CAD),温性自身免疫性溶血性贫血,和阵发性夜间血红蛋白尿(PNH),狼疮肾炎(LN),大疱性类天疱疮,天疱疮,例如寻常型天疱疮(PV)和叶型天疱疮(PF),和C3肾小球病。可以向受试者施用治疗量的RNAi,如约0.01mg/kg至约200mg/kg。优选1mg/kg至约50mg/kg。RNAi优选皮下施用,即,通过皮下注射。可以将一次或多次注射用于向受试者递送所需剂量的RNAi。注射可以在一段时间内重复。Administration of RNAi according to the methods disclosed herein can result in the prevention or treatment of complement component C3 related disorders, for example, cold agglutinin disease (CAD), warm autoimmune hemolytic anemia, and paroxysmal nocturnal hemoglobinuria (PNH), lupus nephritis (LN), bullous pemphigoid, pemphigus, such as pemphigus vulgaris (PV) and pemphigus foliaceus (PF), and C3 glomerulopathy. A therapeutic amount of RNAi can be administered to the subject, such as from about 0.01 mg/kg to about 200 mg/kg. Preferably, 1 mg/kg to about 50 mg/kg. RNAi is preferably administered subcutaneously, that is, by subcutaneous injection. One or more injections can be used to deliver the desired dose of RNAi to the subject. The injection can be repeated over a period of time.
在一些实施方案中,RNAi以约10mg至约800mg的固定剂量施用。在一些实施方案中,RNAi以约10至50mg、约50mg至约200mg、约200mg至约400mg或约400mg至约800mg的固定剂量向受试者施用。在一些实施方案中,RNAi以约10mg、约50mg、约100mg、约200mg、约300mg、约400mg、500mg、约600mg、约700mg或约800mg的固定剂量向受试者施用。In some embodiments, RNAi is administered at a fixed dose of about 10 mg to about 800 mg. In some embodiments, RNAi is administered to a subject at a fixed dose of about 10 to 50 mg, about 50 mg to about 200 mg, about 200 mg to about 400 mg, or about 400 mg to about 800 mg. In some embodiments, RNAi is administered to a subject at a fixed dose of about 10 mg, about 50 mg, about 100 mg, about 200 mg, about 300 mg, about 400 mg, 500 mg, about 600 mg, about 700 mg, or about 800 mg.
可以定期重复施用。在某些实施方式中,在初始治疗方案之后,可以以较低频率进行治疗。重复给药方案可包括定期施用治疗量的RNAi,如每月一次至每年一次。在某些实施方式中,RNAi施用大约每月一次至大约每三个月一次,或者大约每三个月一次至大约每六个月一次,甚至是每年一次。Can be regularly repeated administration. In certain embodiments, after the initial treatment regimen, treatment can be carried out at a lower frequency. Repeated dosing regimens may include regular administration of a therapeutic amount of RNAi, such as once a month to once a year. In certain embodiments, RNAi is administered from about once a month to about once every three months, or from about once every three months to about once every six months, or even once a year.
本公开进一步提供了RNAi剂或其药物组合物与其他药物和/或其他治疗方法(例如,已知药物和/或已知治疗方法,比如,例如,目前用于治疗这些病症的那些)联合治疗将获益于C3基因表达的降低和/或抑制的受试者,例如,患有C3相关疾病的受试者。例如,适于治疗将从C3表达降低中获益的受试者(例如,患有补体成分C3相关疾病的受试者)的其他治疗剂和治疗方法,包括血浆电泳、溶栓治疗(例如,链激酶)、抗血小板药物、叶酸、皮质类固醇;免疫抑制剂;抗血栓剂、补体抑制剂、肾上腺素能药物、干扰促炎性细胞因子信(如TNF-α或IL-1)号传导的药物(例如,IRAK、NIK、IKK、p38或MAP激酶抑制剂);C3环肽抑制剂;其他治疗剂也包括抗补体成分C5抗体或其抗原结合片段(例如,依库珠单抗)。The present disclosure further provides for the combination of RNAi agents or pharmaceutical compositions thereof with other drugs and/or other treatments (e.g., known drugs and/or known treatments, such as, for example, those currently used to treat these conditions) for the treatment of subjects who would benefit from the reduction and/or inhibition of C3 gene expression, e.g., subjects with a C3-related disease. For example, other therapeutic agents and treatments suitable for treating subjects who would benefit from the reduction of C3 expression (e.g., subjects with a complement component C3-related disease) include plasma electrophoresis, thrombolytic therapy (e.g., streptokinase), antiplatelet drugs, folic acid, corticosteroids; immunosuppressants; antithrombotic agents, complement inhibitors, adrenergic drugs, drugs that interfere with proinflammatory cytokine signaling (e.g., TNF-α or IL-1) (e.g., IRAK, NIK, IKK, p38 or MAP kinase inhibitors); C3 cyclic peptide inhibitors; other therapeutic agents also include anti-complement component C5 antibodies or antigen-binding fragments thereof (e.g., eculizumab).
实施例Example
实施例1.靶向配体和siRNA的制备Example 1. Preparation of targeting ligands and siRNA
在本文没有具体给出试剂来源的情况下,此类试剂可以从任何分子生物学试剂供应商处获得,其质量/纯度标准适用于分子生物学。Unless the source of a reagent is specifically given herein, such reagent can be obtained from any molecular biology reagent supplier at quality/purity standards appropriate for molecular biology.
核酸序列表示中使用的核苷酸单体的缩写。Abbreviation for nucleotide monomers used in nucleic acid sequence representation.
表A.用于核酸序列表示的核苷酸单体的缩写
Table A. Nucleotide monomer abbreviations used in nucleic acid sequence representation
靶向配体的制备Preparation of targeting ligands
L96的制备参照专利CN104717982B描述的方法进行。The preparation of L96 was carried out according to the method described in patent CN104717982B.
寡核苷酸的制备Preparation of oligonucleotides
(1)siRNA的制备(1) Preparation of siRNA
首先,使用基于计算机的算法生成了与人C3 mRNA(NM_000064.3,表1)互补的候选寡核苷酸序列,其中某些序列也与食蟹猴的C3 mRNA(XM_005587719.3,表1)互补或不多于2个错配。其中某些设计为正义链和反义链分别为19/21配对的双链siRNA,反义链带有两个与mRNA序列互补的悬垂末端,在某些情况下反义链的悬垂末端为非互补的UU;其中某些序列设计为正义链和反义链分别为21/23配对的双链siRNA,反义链带有两个与mRNA序列互补的悬垂末端;其中某些序列设计为21/21、23/23配对的双链siRNA。其中某些互补配对序列反义链的5'端第1位(正义链3'端最后1位)碱基替换为与C3 mRNA不匹配的碱基。First, a computer-based algorithm was used to generate candidate oligonucleotide sequences complementary to human C3 mRNA (NM_000064.3, Table 1). Some of these sequences were also complementary to or had no more than two mismatches with cynomolgus macaque C3 mRNA (XM_005587719.3, Table 1). Some of these sequences were designed as double-stranded siRNAs with a 19/21 sense/antisense pairing, with the antisense strand having two overhangs complementary to the mRNA sequence; in some cases, the antisense strand had non-complementary UU overhangs. Other sequences were designed as double-stranded siRNAs with a 21/23 sense/antisense pairing, with the antisense strand having two overhangs complementary to the mRNA sequence. Other sequences were designed as double-stranded siRNAs with 21/21 or 23/23 pairings. In some of these complementary pairs, the first base at the 5' end of the antisense strand (the last base at the 3' end of the sense strand) was replaced with a base that did not match the C3 mRNA.
表1人、食蟹猴C3 mRNA序列
Table 1 Human and cynomolgus macaque C3 mRNA sequences
siRNA序列经由正义链(sense strand,SS)和反义链(antisense strand,AS)在固相支持物上单独合成,经脱保护、切割、纯化、退火、纯化并冻干后得到。The siRNA sequence is synthesized separately on a solid support via the sense strand (SS) and antisense strand (AS), and is obtained after deprotection, cleavage, purification, annealing, purification, and freeze-drying.
固相合成(图2):使用亚磷酰胺技术在固相支持物上使用寡核苷酸自动合成仪分别合成正义链和反义链。所述合成仪如AKTA Oligopilot(Cytiva公司),Dr.Oligo 192XLc(昆山伯利克精密仪器有限公司)。固相合成从序列的3’端开始,按照序列顺序依次将单体偶联进序列,每偶联一个亚磷酰胺单体,均包含四个化学步骤:1)解封或脱保护(脱羟基保护基);2)偶联;3)氧化;4)封端。所用亚磷酰胺单体、试剂、纯化耗材均为商业化流通试剂及耗材,如购自上海兆维科技发展有限公司多种亚磷酰胺单体(如5'-O-(4,4'-Dimethoxytrityl)-2'-O-methyl-Uridine-3'-CE-Phosphoramidite),购自Sigma-Aldrich LLC反应试剂(如40wt%甲胺水溶液,28wt%氢氧化铵水溶液等)等。本文所使用的siRNA合成及纯化方法如US20130178612A1,US2015100197A1等所描述;含VPUm、APU结构序列合成方法如J.Med.Chem.2018,61,734-744所描述。Solid-phase synthesis (Figure 2): Sense and antisense strands are synthesized separately on a solid support using phosphoramidite technology using an automated oligonucleotide synthesizer. Examples of such synthesizers include the AKTA Oligopilot (Cytiva) and the Dr. Oligo 192XLc (Kunshan Berleke Precision Instrument Co., Ltd.). Solid-phase synthesis begins at the 3' end of the sequence and couples monomers sequentially into the sequence. Each coupling of a phosphoramidite monomer involves four chemical steps: 1) unblocking or deprotection (removal of the hydroxyl protecting group); 2) coupling; 3) oxidation; and 4) capping. All phosphoramidite monomers, reagents, and purification consumables used were commercially available, including various phosphoramidite monomers (e.g., 5'-O-(4,4'-Dimethoxytrityl)-2'-O-methyl-Uridine-3'-CE-Phosphoramidite) purchased from Shanghai Zhaowei Technology Development Co., Ltd., and reaction reagents (e.g., 40 wt% aqueous methylamine solution, 28 wt% aqueous ammonium hydroxide solution) purchased from Sigma-Aldrich LLC. The siRNA synthesis and purification methods used in this article are described in US20130178612A1 and US2015100197A1, among others; the synthesis methods for sequences containing VPUm and APU structures are described in J. Med. Chem. 2018, 61, 734-744.
(2)双链RNA试剂的制备(2) Preparation of double-stranded RNA reagent
(a)正义链的合成(a) Synthesis of the positive chain
固相亚磷酰胺法是一种技术成熟的寡核酸合成方法。采用计算机控制的合成仪,在不锈钢合成柱中进行反应。正义链合成中以负载有靶向配体(例如L96)的固相支持物为起始,或直接以固相支持物为起始,通过固相合成仪控制不同的管路按照序列3'到5'的顺序注入不同的原料、试剂和溶剂,逐个连接亚磷酰胺核苷单体。反应过程包含脱除DMT保护基反应、缩合反应、氧化或硫代反应、封端反应共四步循环,每次循环连接上一个核苷酸单元,得到19或21个核苷酸单元的寡核酸序列。合成完成后,在固相合成柱上脱去保护基(2-氰乙基),再通过氨解反应将合成好的序列从固相支持物上切割下来,过滤,用乙醇洗涤滤饼,收集滤液及洗涤液,浓缩得到正义链粗品。粗品经色谱纯化(SOURCE 15Q),冻干得目标产品正义链。其中,在合成仪中,以负载有靶向配体(例如L96)的固相支持物为起始,合成了siRNA正义链缀合物;直接以固相支持物为起始,合成了siRNA。The solid-phase phosphoramidite method is a well-established method for oligonucleotide synthesis. Reactions are carried out in a stainless steel synthesis column using a computer-controlled synthesizer. Sense strand synthesis begins with a solid-phase support loaded with a targeting ligand (e.g., L96), or directly with the solid-phase support. The solid-phase synthesizer controls different pipelines to inject different raw materials, reagents, and solvents in the order of 3' to 5' of the sequence, connecting the phosphoramidite nucleoside monomers one by one. The reaction process involves four cycles: DMT protection group removal, condensation, oxidation or thiolation, and end-capping. Each cycle connects one nucleotide unit to produce an oligonucleotide sequence of 19 or 21 nucleotide units. After synthesis, the protecting group (2-cyanoethyl) is removed on the solid-phase synthesis column, and the synthesized sequence is cleaved from the solid-phase support by aminolysis. The resulting product is filtered, the filter cake is washed with ethanol, and the filtrate and washings are collected and concentrated to obtain the crude sense strand. The crude product is purified by chromatography (SOURCE 15Q) and lyophilized to obtain the target sense strand. Among them, in the synthesizer, the siRNA sense chain conjugate is synthesized starting from the solid support loaded with the targeting ligand (such as L96); and the siRNA is synthesized directly starting from the solid support.
(b)反义链的合成(b) Synthesis of antisense strand
反义链合成与正义链类似,通过固相合成仪控制不同的管路按照序列3'到5'的顺序注入不同的原料、试剂和溶剂,逐个连接亚磷酰胺核苷单体。反应过程包含脱除DMT保护基反应、缩合反应、氧化或硫代反应、封端反应共四步循环,每次循环连接上一个核苷酸单元,得到21或23个核苷酸单元的寡核酸序列。合成完成后,在固相合成柱上脱去保护基(2-氰乙基),再通过氨解反应将合成好的序列从固相支持物上切割下来,过滤,用乙醇洗涤滤饼,收集滤液及洗涤液,浓缩得到反义链粗品。粗品经色谱纯化(SOURCE 15Q),超滤,冻干得目标产品反义链siRNA。The synthesis of the antisense chain is similar to that of the sense chain. Different raw materials, reagents and solvents are injected into different pipelines in the order of 3' to 5' of the sequence through a solid phase synthesizer to connect the phosphoramidite nucleoside monomers one by one. The reaction process includes four cycles of DMT protection group removal reaction, condensation reaction, oxidation or thiolation reaction, and end-capping reaction. Each cycle connects one nucleotide unit to obtain an oligonucleotide sequence of 21 or 23 nucleotide units. After the synthesis is completed, the protecting group (2-cyanoethyl) is removed on the solid phase synthesis column, and then the synthesized sequence is cut from the solid phase support by aminolysis reaction, filtered, and the filter cake is washed with ethanol. The filtrate and washing liquid are collected and concentrated to obtain the crude antisense chain. The crude product is purified by chromatography (SOURCE 15Q), ultrafiltered, and freeze-dried to obtain the target product antisense chain siRNA.
(c)双链siRNA制备(c) Preparation of double-stranded siRNA
将AS链和SS链分别溶解在注射水中,以确定的比例(1.01:1.0-1.2:1.0)混合,30-50℃孵育时间30-90min,降温至室温。经冷冻干燥,得到双链siRNA产品。Dissolve the AS and SS strands separately in injection water, mix at a defined ratio (1.01:1.0-1.2:1.0), incubate at 30-50°C for 30-90 minutes, cool to room temperature, and freeze-dry to obtain double-stranded siRNA.
根据同样的方法,制备得到下表2、表3和表4的双链siRNA药剂。According to the same method, the double-stranded siRNA agents shown in Tables 2, 3 and 4 below were prepared.
表2、表3和表4中,“G”、“C”、“A”、“U”、“T”和“I”通常分别代表以鸟嘌呤、胞嘧啶、腺嘌呤、尿嘧啶、胸腺嘧啶和次黄嘌呤为碱基的核苷酸。表2、表3和表4中的裸序列是指未经修饰的寡核苷酸序列。In Tables 2, 3, and 4, "G," "C," "A," "U," "T," and "I" generally represent nucleotides based on guanine, cytosine, adenine, uracil, thymine, and hypoxanthine, respectively. The naked sequences in Tables 2, 3, and 4 refer to unmodified oligonucleotide sequences.
修饰:m代表2'-甲氧基;f代表2'-脱氧-2'-氟;s代表硫代磷酸酯;VPUm为2'-甲氧基修饰尿苷;M式为2'-O-甲基-6-(3-(2-羧乙基)苯基)-嘌呤核苷酸;L96为N-[tris(GalNAc-烷基)酰胺基癸酰基]-4-羟基脯氨醇(Hyp-(GalNAc-烷基)3);dA代表2'-脱氧腺苷-3'-磷酸酯;dG代表2'-脱氧鸟苷-3'-磷酸酯;dC代表2'-脱氧胞苷-3'-磷酸酯;dU代表2'-脱氧尿苷-3'-磷酸酯。Modifications: m represents 2'-methoxy; f represents 2'-deoxy-2'-fluoro; s represents phosphorothioate; VPUm is 2'-methoxy-modified uridine; M formula is 2'-O-methyl-6-(3-(2-carboxyethyl)phenyl)-purine nucleotide; L96 is N-[tris(GalNAc-alkyl)amidodecanoyl]-4-hydroxyprolinol (Hyp-(GalNAc-alkyl)3); dA represents 2'-deoxyadenosine-3'-phosphate; dG represents 2'-deoxyguanosine-3'-phosphate; dC represents 2'-deoxycytidine-3'-phosphate; dU represents 2'-deoxyuridine-3'-phosphate.
VPUm:
VPUm:
M:
M:
L96:
L96:
表2寡核苷酸裸序列
Table 2 Oligonucleotide naked sequences
表3寡核苷酸修饰序列
Table 3 Oligonucleotide modified sequences
表4带靶向配体siRNA序列
Table 4 siRNA sequences with targeting ligands
实施例2.C3-siRNA裸序列的体外活性筛选Example 2. In vitro activity screening of naked C3-siRNA sequences
(1)细胞培养和转染:(1) Cell culture and transfection:
取人肝癌细胞(未分化)(也称HLE细胞)(武汉普诺赛生命科技有限公司,货号CL-0651)和Hep3B细胞(武汉普诺赛生命科技有限公司,货号CL-0102),置于37℃,5% CO2的培养箱中,使用DMEM培养基(赛百慷(上海)生物技术股份有限公司,货号iCell-0001),添加10%FBS(GIBCO,12483020)、1%青霉素-链霉素(GIBCO,15140-122)培养,待细胞汇合度达到90%,通过胰蛋白酶-EDTA(Thermo,25200-072)进行消化,用计数仪(Countstar,IC1000)计数,190μl细胞悬液/孔,接种于96孔板中,HLE细胞的接种数为:5*104细胞/孔,Hep3B细胞的接种数为2*104细胞/孔,待次日贴壁进行转染。Human hepatocellular carcinoma cells (undifferentiated) (also known as HLE cells) (Wuhan Punosai Life Science Technology Co., Ltd., catalog number CL-0651) and Hep3B cells (Wuhan Punosai Life Science Technology Co., Ltd., catalog number CL-0102) were taken and placed in an incubator at 37°C and 5% CO2 . They were cultured using DMEM medium (Sybio (Shanghai) Biotechnology Co., Ltd., catalog number iCell-0001) supplemented with 10% FBS (GIBCO, 12483020) and 1% penicillin-streptomycin (GIBCO, 15140-122). When the cell confluence reached 90%, they were digested with trypsin-EDTA (Thermo, 25200-072) and counted using a cell counter (Countstar, IC1000). 190 μl of cell suspension/well was inoculated into a 96-well plate. The inoculation number of HLE cells was 5* 104 cells/well, and the inoculation number of Hep3B cells was 2*10 4 cells/well, and wait for the cells to adhere to the wall for transfection the next day.
使用LipofectamineTM RNAiMAX(thermofisher,13778150)进行转染,将2.2μl(2μM)稀释化合物、19.1μlOpti-MEM(thermofisher,1105821),0.7μl RNAiMAX混合配成转染复合物,孵育5分钟后,将转染复合物加入细胞中(每个复合物两个技术重复),每孔10μl,siRNA的终浓度为10nM,在37℃、5%CO2培养箱中培养24小时。LipofectamineTM RNAiMAX (thermofisher, 13778150) was used for transfection. 2.2 μl (2 μM) diluted compound, 19.1 μl Opti-MEM (thermofisher, 1105821), and 0.7 μl RNAiMAX were mixed to form a transfection complex. After incubation for 5 minutes, the transfection complex was added to the cells (two technical replicates for each complex), 10 μl per well, and the final concentration of siRNA was 10 nM. The cells were cultured in a 37°C, 5% CO2 incubator for 24 hours.
(2)RNA提取和检测(2) RNA extraction and detection
(i)使用RNA-Quick Purification Kit(RNA快速提取试剂盒,奕杉生物,RN001)提取总RNA:(i) Total RNA was extracted using the RNA-Quick Purification Kit (RN001, Yishan Biotechnology):
从培养箱中取出12孔板,吸干培养基,用适量的PBS洗一次,每孔加入500μl的裂解缓冲液,将上清转移到新的1.5ml离心管中。向裂解的细胞中加入500μl的无水乙醇充分混匀(若出现沉淀,这是正常现象,继续进行操作即可)。将离心管颠倒几次,或用移液器用力吹吸10次使产生的沉淀分散开,然后将液体加入离心柱,将离心管对称放入离心机(eppendorf,5430),4000×g离心1min。取出离心管向柱中加入500μl的洗涤缓冲液,12000×g离心1min,离心结束后取出柱子,倒掉废液,将RNA柱装回收集管,空管离心一次,去除可能残留的洗涤缓冲液。将柱子放到干净的无RNA酶的1.5ml离心管上,开盖晾干2分钟。在RNA柱的膜中心部位加入30μl的洗脱缓冲液,室温静置2分钟,2000×g离心1min,RNA洗脱下来后,置于冰上。测定洗脱的RNA浓度,以便于后续实验使用。提取出来的RNA可立即用于后续实验,也可保存在-80℃备用。Remove the 12-well plate from the incubator, aspirate the medium, wash once with an appropriate amount of PBS, add 500 μl of lysis buffer to each well, and transfer the supernatant to a fresh 1.5 ml centrifuge tube. Add 500 μl of absolute ethanol to the lysed cells and mix thoroughly (if a precipitate forms, this is normal; continue with the procedure). Invert the centrifuge tube several times or pipette vigorously 10 times to disperse the precipitate. Then add the liquid to the spin column, place the tubes symmetrically in a centrifuge (Eppendorf, 5430), and centrifuge at 4000 × g for 1 minute. Remove the centrifuge tube and add 500 μl of wash buffer to the column. Centrifuge at 12000 × g for 1 minute. After centrifugation, remove the column, discard the waste liquid, and return the RNA column to the collection tube. Centrifuge the empty tube once to remove any residual wash buffer. Place the column in a clean RNase-free 1.5 ml centrifuge tube and air dry it with the lid open for 2 minutes. Add 30 μl of elution buffer to the center of the RNA column membrane. Let stand at room temperature for 2 minutes. Centrifuge at 2000 × g for 1 minute to elute the RNA, then place on ice. Measure the eluted RNA concentration for subsequent experiments. The extracted RNA can be used immediately for subsequent experiments or stored at -80°C for later use.
(ii)使用IIQ RT SuperMix for qPCR(+gDNA wiper)反转录试剂盒(诺唯赞,R223-01)合成cDNA:(ii) Use cDNA was synthesized using IIQ RT SuperMix for qPCR (+gDNA wiper) reverse transcription kit (Novozyme, R223-01):
使用无RNA酶的离心管中配制混合液4μl 4×gDNA wiper Mix、1μg模板RNA、加无RNA酶的ddH2O至16μl去除基因组DNA,用移液器轻轻吹打混匀,42℃2min。然后反应管中直接加入4μl 5×HiScript II qRT SuperMix II用移液器轻轻吹打混匀,置于PCR仪(Applied Biosystems,9700)50℃,15min;85℃,5sec,4℃保持。产物可立即用于qPCR反应,或在-20℃保存,并在半年内使用,长期存放需分装后在-80℃保存,cDNA应避免反复冻融。In an RNase-free centrifuge tube, prepare a mixture of 4 μl of 4×g DNA wiper mix, 1 μg of template RNA, and 16 μl of RNase-free ddH₂O to remove genomic DNA. Gently pipette to mix thoroughly and incubate at 42°C for 2 minutes. Then, add 4 μl of 5× HiScript II qRT SuperMix II directly to the reaction tube and gently pipette to mix thoroughly. Place the tube in a PCR instrument (Applied Biosystems, 9700) and cycle at 50°C for 15 minutes, 85°C for 5 seconds, and hold at 4°C. The product can be used immediately for qPCR reactions or stored at -20°C and used within six months. For long-term storage, aliquot and store at -80°C. Avoid repeated freeze-thaw cycles for cDNA.
(iii)使用ChamQ SYBR qPCR Master Mix(诺唯赞,Q311-02)qPCR定量:(iii) qPCR quantification using ChamQ SYBR qPCR Master Mix (Novozymes, Q311-02):
配置混合液10μl 2×ChamQ SYBR qPCR Master Mix、0.5μl Forword primer(睿博兴科)、0.5μl Reverse primer(睿博兴科)、1μl Template cDNA、8μl ddH2O至20μl体系,每个样品3个重复,将96孔板放到qPCR仪(ROCGENE,Archimed),执行程序:预变性,95℃,30sec;扩增,95℃,10sec,60℃,30sec,40个循环;溶解曲线,95℃,15sec,60℃,60sec,95℃,15sec。A mixture of 10 μl 2× ChamQ SYBR qPCR Master Mix, 0.5 μl Forword primer (Ruiboxing), 0.5 μl Reverse primer (Ruiboxing), 1 μl Template cDNA, and 8 μl ddH 2 O was prepared to a 20 μl system. Each sample was replicated three times. A 96-well plate was placed in a qPCR instrument (ROCGENE, Archimed) and the following program was performed: initial denaturation at 95°C for 30 seconds; amplification at 95°C for 10 seconds, 60°C for 30 seconds, for 40 cycles; and melting curve analysis at 95°C for 15 seconds, 60°C for 60 seconds, and 95°C for 15 seconds.
(3)数据统计分析:(3) Data statistical analysis:
将数据导出EXCEL格式,用CTC3-CTGAPDH,将对照组进行归一化处理,为了计算相对沉默效率的倍数变化,数据使用△△CT法进行分析,将得到的三个平行重复数据计算平均值和标准偏差。The data were exported to EXCEL format and normalized to the control group using CT C3 -CT GAPDH . To calculate the fold change of relative silencing efficiency, the data were analyzed using the ΔΔCT method, and the mean and standard deviation of the three replicates were calculated.
2次HLE细胞的筛选结果见表5-表6。The results of the two HLE cell screenings are shown in Tables 5 and 6.
由表5可见,在加药量为50nM时,有56条siRNA的C3 mRNA的抑制率可以的达到70%以上,某些序列对C3 mRNA的抑制率可以达到80%以上,甚至90%以上。为进一步评估更优选序列,取36条抑制率较好的序列,进行加药量10nM和1nM的双浓度筛选,检测结果见表6,结果可见,当加药量进一步下降时,AL0161002、AL0161005、AL0161006、AL0161015、AL0161018、AL0161020、AL0161037、AL0161041、AL0161048、AL0161067和AL0161091的双浓度筛选结果较优,10nM抑制率可以达到60%以上,或者1nM的抑制率也接近60%。As shown in Table 5, when the dosage is 50 nM, the inhibition rate of C3 mRNA by 56 siRNAs can reach more than 70%, and the inhibition rate of C3 mRNA by some sequences can reach more than 80%, or even more than 90%. To further evaluate more preferred sequences, 36 sequences with good inhibition rates were selected for dual-concentration screening at 10 nM and 1 nM. The test results are shown in Table 6. As can be seen, when the drug dosage was further decreased, AL0161002, AL0161005, AL0161006, AL0161015, AL0161018, AL0161020, AL0161037, AL0161041, AL0161048, AL0161067, and AL0161091 showed better results in dual-concentration screening, with inhibition rates exceeding 60% at 10 nM and close to 60% at 1 nM.
表5在HLE细胞中C3 siRNA裸序列敲低水平
Table 5 Knockdown levels of naked C3 siRNA sequences in HLE cells
表6在Hep3B中的C3 siRNA裸序列敲低水平
Table 6 C3 siRNA naked sequence knockdown level in Hep3B
实施例3.化学修饰的C3-siRNA体外活性筛选Example 3. In vitro activity screening of chemically modified C3-siRNA
(1)细胞细胞培养和转染:(1) Cell culture and transfection:
(i)Hep3B细胞的培养和转染同实施例2。(i) The culture and transfection of Hep3B cells were the same as in Example 2.
(ii)食蟹猴肝细胞的培养和转染(ii) Culture and transfection of cynomolgus monkey hepatocytes
使用食蟹猴肝细胞(北京瑞德百奥生物科技有限公司,cmTCSC)。先预热培养基,取出解冻培养基(北京瑞德百奥生物科技有限公司,HEPO24)到生物安全柜,在36ml解冻培养基(TPCS,HEPO24)中加入4mL的FBS,制成完全解冻培养基,在37℃水浴中加热10分钟。用涂层介质(北京瑞德百奥生物科技有限公司,HEPO44)在CO2培养箱中的37℃处理0.5h。从液氮中取出细胞,37℃水浴锅复苏细胞,约2min后取出,将细胞悬液转至预热的40ml解冻培养基中,用2ml完全解冻培养基清洗细胞冻存管,将细胞悬液在180×g下离心1min,弃去上清,加入2ml提前预热的CM播种培养基(北京瑞德百奥生物科技有限公司,CMHEP054),轻缓吹散混匀细胞悬液,取20μl细胞悬液计数。根据计数结果,接种12孔板,3*105/孔,置于37℃,5% CO2的培养箱中培养。贴壁4-5h后,吸出CM播种培养基,更换为预热的培养基(北京瑞德百奥生物科技有限公司,CMHEP064),贴壁6h后转染。Cynomolgus macaque hepatocytes (cmTCSC, Beijing Red Biotech Co., Ltd.) were used. The culture medium was preheated. Thawing culture medium (HEPO24, Beijing Red Biotech Co., Ltd.) was taken to a biosafety cabinet. 4 mL of FBS was added to 36 mL of thawing culture medium (TPCS, HEPO24) to prepare a complete thawing culture medium. The culture medium was heated in a 37°C water bath for 10 minutes. The cells were treated with coating medium (HEPO44, Beijing Red Biotech Co., Ltd.) in a CO2 incubator at 37°C for 0.5 h. The cells were removed from liquid nitrogen and revived in a 37°C water bath. After approximately 2 minutes, the cells were removed and the cell suspension was transferred to 40 mL of preheated thawing culture medium. The cell cryovial was rinsed with 2 mL of complete thawing culture medium. The cell suspension was centrifuged at 180 × g for 1 minute, the supernatant was discarded, and 2 mL of preheated CM seeding medium (CMHEP054, Beijing Red Biotech Co., Ltd.) was added. The cell suspension was gently dispersed and mixed, and 20 μl of the cell suspension was taken for counting. Based on the count results, 12-well plates were seeded at 3*10 5 /well and cultured in a 37°C, 5% CO 2 incubator. After 4-5 hours of adherence, the CM seeding medium was aspirated and replaced with pre-warmed culture medium (Beijing Red Biotech Co., Ltd., CMHEP064). Transfection was performed 6 hours after adherence.
使用LipofectamineTM3000 Transfection Reagent(thermofisher,L3000150)进行转染,体系①用50μl Opti-MEM(thermofisher,1105821)稀释50nM修饰后siRNA(苏州贝信生物技术有限公司),体系②用50μl Opti-MEM稀释3μl Lipo3000,分别静置5min后,将体系①与②混合再静置15min,滴加到12孔板,转染4h后更换DMEM/F12完全培养基,将12孔板置于培养箱中孵育48h。Transfection was performed using Lipofectamine ™ 3000 Transfection Reagent (thermofisher, L3000150). System ① was diluted with 50 μl Opti-MEM (thermofisher, 1105821) to contain 50 nM modified siRNA (Suzhou Beixin Biotechnology Co., Ltd.). System ② was diluted with 3 μl Lipo3000 in 50 μl Opti-MEM. After standing for 5 min, systems ① and ② were mixed and allowed to stand for another 15 min before being added dropwise to a 12-well plate. DMEM/F12 complete medium was replaced 4 h after transfection, and the 12-well plate was incubated in an incubator for 48 h.
(2)RNA提取和检测(2) RNA extraction and detection
同实施例2。Same as Example 2.
(3)数据统计分析:(3) Data statistical analysis:
同实施例2。Same as Example 2.
由表7可见,在食蟹猴原代肝细胞中,当给药量为1nM时,除了AL0165002和AL0165008以外,所有序列对C3 mRNA的抑制率均可以达到60%,特别是AL0165005、AL0165006、AL0165009、AL0165010和AL0165011序列对C3 mRNA的抑制率可以达到70%,甚至接近80%。As can be seen from Table 7, in primary crab-eating macaque hepatocytes, when the dosage was 1 nM, except for AL0165002 and AL0165008, the inhibition rate of C3 mRNA by all sequences could reach 60%, especially AL0165005, AL0165006, AL0165009, AL0165010 and AL0165011 sequences, the inhibition rate of C3 mRNA could reach 70%, or even close to 80%.
由表8可见,在Hep3B细胞中,当给药量为10nM时,AL0165017、AL0165023、AL0165031、AL0165048、AL0165062、AL0165074、AL0165082、AL0165088、AL0165107、AL0165112、AL0165114、AL0165115、AL0165116、AL0165123、AL0165124、AL0165126、AL0165128、AL0165129、AL0165134、AL0165136、AL0165143、AL0165146、AL0165149、AL0165150、AL0165151、AL0165152、AL0165154、AL0165155、AL0165156、AL0165161和AL0165164对C3 mRNA的抑制率可以大于80%,甚至接近90%,并且当给药量为1nM时,对C3 mRNA至少达到60%。将药效表现较优的序列进行部分碱基的错配或加入VPUm修饰后,药效可已经一步提高,如表9和表10所示。进一步将药效表现更优的序列进一步在食蟹猴原代肝细胞中进行测试,每批实验均与AL0165001进行对比,筛选出药效表现较优的序列,如表11-表13所示,AL0165048、AL0165088、AL0165112、AL0165116、AL0165124、AL0165129、AL0165136、AL0165146、AL0165167、AL0165171、AL0165177、AL0165178、AL0165188、AL0165189、AL0165191、AL0165192、AL0165193、AL0165195、AL0165205、AL0165207、AL0165210、AL0165221、AL0165223、AL0165225、AL0165227、AL0165229、AL0165231、AL0165232、AL0165233、AL0165234、AL0165235、AL0165236、AL0165237和AL0165238表现更优。As shown in Table 8, in Hep3B cells, when the dosage was 10 nM, AL0165017, AL0165023, AL0165031, AL0165048, AL0165062, AL0165074, AL0165082, AL0165088, AL0165107, AL0165112, AL0165114, AL0165115, AL0165116, AL0165123, AL0165124, AL0165126, AL0165128 AL0165129, AL0165134, AL0165136, AL0165143, AL0165146, AL0165149, AL0165150, AL0165151, AL0165152, AL0165154, AL0165155, AL0165156, AL0165161, and AL0165164 showed inhibition rates of greater than 80% and even approaching 90% against C3 mRNA. Furthermore, at a 1 nM dose, inhibition of C3 mRNA reached at least 60%. Modification of the sequences with superior efficacy by mispairing some bases or adding VPUm further enhanced their efficacy, as shown in Tables 9 and 10. The sequences with better efficacy were further tested in primary cynomolgus monkey hepatocytes. Each batch of experiments was compared with AL0165001 to screen out the sequences with better efficacy, as shown in Tables 11-13: AL0165048, AL0165088, AL0165112, AL0165116, AL0165124, AL0165129, AL0165136, AL0165146, AL0165167, AL0165171, AL0165177, AL0165178, AL0165188, and AL0165190. 65189, AL0165191, AL0165192, AL0165193, AL0165195, AL0165205, AL0165207, AL0165210, AL0165221, AL0165223, AL0165225, AL0165227, AL0165229, AL0165231, AL0165232, AL0165233, AL0165234, AL0165235, AL0165236, AL0165237 and AL0165238 performed better.
另一组Hep3B的体外活性筛选实验中,结果如表14可以看出,当给药量为1nM和0.1nM时,不同修饰的序列药效可以得到进一步提升,如AL0165242、AL0165217、AL0165246、AL0165218、AL0165247和AL0165248对C3 mRNA的抑制率可以超过85%,甚至超过90%,特别是反义链中含有2'-5'-磷酸二酯键或部分位置Im的取代修饰时,可以提高药效。In another set of in vitro activity screening experiments on Hep3B, the results are shown in Table 14. When the dosage is 1 nM and 0.1 nM, the efficacy of the differently modified sequences can be further improved. For example, the inhibition rate of AL0165242, AL0165217, AL0165246, AL0165218, AL0165247 and AL0165248 on C3 mRNA can exceed 85%, or even exceed 90%. In particular, when the antisense chain contains a 2'-5'-phosphodiester bond or a substitution modification at position Im, the efficacy can be improved.
另一组猴原代肝细胞中体外活性的筛选实验中,结果如表15所示,当给药量为1nM和0.1nM时,不同修饰的序列药效可以得到进一步提升,如AL0165242、AL0165217、AL0165246、AL0165218、AL0165247和AL0165248对C3 mRNA的抑制率可以超过85%,甚至超过90%,特别是反义链中含有2'-5'-磷酸二酯键的修饰或部分位置Im取代修饰时,可以提高药效。In another set of in vitro activity screening experiments in primary monkey hepatocytes, the results are shown in Table 15. When the dosage is 1 nM and 0.1 nM, the efficacy of the differently modified sequences can be further enhanced. For example, the inhibition rate of AL0165242, AL0165217, AL0165246, AL0165218, AL0165247 and AL0165248 on C3 mRNA can exceed 85%, or even exceed 90%. In particular, when the antisense chain contains a 2'-5'-phosphodiester bond modification or an Im substitution modification at some positions, the efficacy can be improved.
表7食蟹猴原代肝细胞中化学修饰C3 siRNA的敲低水平
Table 7 Knockdown levels of chemically modified C3 siRNA in primary cynomolgus monkey hepatocytes
表8在Hep3B中化学修饰的C3-siRNA的敲低水平
Table 8 Knockdown levels of chemically modified C3-siRNA in Hep3B
表9在Hep3B中化学修饰的C3-siRNA的敲低水平
Table 9 Knockdown levels of chemically modified C3-siRNA in Hep3B
表10在Hep3B中化学修饰的C3-siRNA的敲低水平
Table 10 Knockdown levels of chemically modified C3-siRNA in Hep3B
表11食蟹猴原代肝细胞中化学修饰C3 siRNA的敲低水平
Table 11 Knockdown levels of chemically modified C3 siRNA in primary cynomolgus monkey hepatocytes
表12食蟹猴原代肝细胞中化学修饰C3 siRNA的敲低水平
Table 12 Knockdown levels of chemically modified C3 siRNA in primary cynomolgus monkey hepatocytes
表13食蟹猴原代肝细胞中化学修饰C3 siRNA的敲低水平
Table 13 Knockdown levels of chemically modified C3 siRNA in primary cynomolgus monkey hepatocytes
表14Hep3B细胞中化学修饰C3 siRNA的敲低水平
Table 14 Knockdown levels of chemically modified C3 siRNA in Hep3B cells
表15猴原代肝细胞中化学修饰C3 siRNA的敲低水平
Table 15 Knockdown levels of chemically modified C3 siRNA in primary monkey hepatocytes
实施例4.C3 RNAi剂在C3的AAV转基因小鼠中的体内测试Example 4. In vivo testing of C3 RNAi agents in C3 AAV transgenic mice
Gluc易分泌、灵敏度高,直接可以测定全血中Gluc表达活性。Gluc通过P2A连接外源基因,Gluc的表达水平,直接反应外源基因mRNA水平。在NCBI数据库中获得人C3基因的mRNA序列(NM_000064.3),通过常规的酶切连接等分子生物学技术获得重组质粒,C3 mRNA序列中的93-2893片段(HsC3_P1)和2293-4531片段(HsC3_P2)分别与Gaussia分泌型荧光素酶(Gluc)以融合蛋白形式分泌表达(其融合蛋白的基因序列见SEQ ID NO.1022和SEQ ID NO.1023)。首先将包含CAG启动子的序列(SEQ ID NO.1024)插入pFB载体(购自Agilent,货号013001)的EcoRI和XhoI之间,获得pFB-AAV-CAG,然后将融合蛋白的基因序列seq2和seq3通过常规的酶切连接等分子生物学技术将片段分别插入pFB-AAV-CAG载体的EcoRI和BamHI之间,获得RA177pFB-AAV-CAG-Gluc-2A-HsC3_P1(图3)和RA178 pFB-AAV-CAG-Gluc-2A-HsC3_P2(图4)载体。两个质粒分别转染Sf9细胞(ATCC CRL-1711TM),获得含有hC3基因的AAV病毒146-177和146-178,然后通过尾静脉注射,并且在施用C3 RNAi试剂或对照之前至少29天施用。Gluc is easily secreted and highly sensitive, and can directly measure Gluc expression activity in whole blood. Gluc is connected to exogenous genes through P2A, and the expression level of Gluc directly reflects the exogenous gene mRNA level. The mRNA sequence of human C3 gene (NM_000064.3) was obtained from the NCBI database, and recombinant plasmids were obtained by molecular biology techniques such as conventional enzyme digestion and ligation. The 93-2893 fragment (HsC3_P1) and the 2293-4531 fragment (HsC3_P2) in the C3 mRNA sequence were respectively secreted and expressed as fusion proteins with Gaussia secretory luciferase (Gluc) (the gene sequence of its fusion protein is shown in SEQ ID NO.1022 and SEQ ID NO.1023). First, a sequence containing the CAG promoter (SEQ ID NO. 1024) was inserted between EcoRI and XhoI of the pFB vector (purchased from Agilent, Catalog No. 013001) to obtain pFB-AAV-CAG. The fusion protein gene sequences seq2 and seq3 were then inserted between EcoRI and BamHI of the pFB-AAV-CAG vector using conventional molecular biology techniques such as enzyme digestion and ligation to obtain the RA177 pFB-AAV-CAG-Gluc-2A-HsC3_P1 ( FIG. 3 ) and RA178 pFB-AAV-CAG-Gluc-2A-HsC3_P2 ( FIG. 4 ) vectors. The two plasmids were transfected into Sf9 cells (ATCC CRL-1711 ™ ) to obtain AAV viruses 146-177 and 146-178 containing the hC3 gene, which were then injected via tail vein at least 29 days prior to administration of the C3 RNAi agent or control.
试验采用SPF级雄性、6~8周周龄的C57BL/6小鼠(斯贝福(北京)生物技术有限公司)。每只小鼠尾静脉注射1.00E+12vg/mL 146-177或146-178AAV病毒颗粒,注射14天后眼眶采血,分离血清进行Gluc发光检测(PierceTMGaussia荧光素酶辉光检测试剂盒,Thermo,16160),根据C3-Gluc发光检测值随机分为两个溶媒对照组(NC组),受试物AL0167001、AL0167002、AL0167003、AL0167004、AL0167005、AL0167006、AL0167007、AL0167008、AL0167009、AL0167010、AL0167011、AL0167012、AL0167013、AL0167014和AL0167015,组共15组。其中,图5A中,AL0167001、AL0167002、AL0167003、AL0167004、AL0167005、AL0167006、AL0167007、AL0167008、AL0167009、AL0167012和AL0167013为注射146-177AAV病毒;图5B中,AL0167001、AL0167008、AL0167009、AL0167010、AL0167011、AL0167014和AL0167015组注射146-178AAV病毒,共17组,每组均为5只。分组后小鼠单次皮下给予对应C3 RNAi剂、溶媒对照。分别在给药前和给药后第8天、15天和22天小鼠采血,分离血清进行luc发光检测,评价siRNA对外源基因mRNA的抑制作用,结果见图5。其中对C3抑制效果最显著的组为AL0167002、AL0167006、AL0167009 AL0167013和AL0167015组。The experiment used SPF male C57BL/6 mice aged 6 to 8 weeks (Beijing Biotechnology Co., Ltd.). Each mouse was injected with 1.00E+12 vg/mL 146-177 or 146-178 AAV virus particles via the tail vein. 14 days after injection, orbital blood was collected and serum was separated for Gluc luminescence detection (Pierce ™ The cells were randomly divided into two groups according to the C3-Gluc luminescence detection value: vehicle control group (NC group) and test group (AL0167001, AL0167002, AL0167003, AL0167004, AL0167005, AL0167006, AL0167007, AL0167008, AL0167009, AL0167010, AL0167011, AL0167012, AL0167013, AL0167014 and AL0167015), for a total of 15 groups. In Figure 5A , groups AL0167001, AL0167002, AL0167003, AL0167004, AL0167005, AL0167006, AL0167007, AL0167008, AL0167009, AL0167012, and AL0167013 were injected with 146-177 AAV virus; in Figure 5B , groups AL0167001, AL0167008, AL0167009, AL0167010, AL0167011, AL0167014, and AL0167015 were injected with 146-178 AAV virus, for a total of 17 groups, each containing 5 mice. After grouping, mice were subcutaneously administered a single dose of the corresponding C3 RNAi agent or a vehicle control. Blood was collected from mice before administration and on days 8, 15, and 22 after administration. Serum was separated and analyzed for luciferase luminescence to evaluate the inhibitory effect of siRNA on exogenous gene mRNA. The results are shown in Figure 5. The groups with the most significant C3 inhibitory effects were AL0167002, AL0167006, AL0167009, AL0167013, and AL0167015.
实施例5.C3 RNAi剂在转基因小鼠中的体内测试Example 5. In vivo testing of C3 RNAi agents in transgenic mice
试验采用SPF级雄性、8~9周周龄的hC3,NM-HU-2000079小鼠(购自南模生物)。在给药第0天获得给药前血清样品,按照hC3水平随机分组。hC3,NM-HU-2000079小鼠单次皮下给予3mg/kg的C3 RNAi剂AL0167001、AL0167006、AL0167009、AL0167013和AL0167015。分别给药后第1周、2周、3周、4周和5周取小鼠血液(眼球取血,取血后1h内送检),hC3表达水平,以给药前为对照,检测C3的敲低水平。实验期间,所有动物未见死亡或濒死症状。临床观察所有动物均未见明显异常。hC3变化水平见图6A。The experiment used SPF male hC3, NM-HU-2000079 mice (purchased from Shanghai Model Organisms), 8-9 weeks old. Pre-dose serum samples were obtained on day 0 of dosing, and the mice were randomly divided into groups according to hC3 levels. hC3, NM-HU-2000079 mice were subcutaneously administered a single 3 mg/kg dose of the C3 RNAi agents AL0167001, AL0167006, AL0167009, AL0167013, and AL0167015. Blood samples were collected from the eyeballs and sent for analysis within 1 hour after administration at 1, 2, 3, 4, and 5 weeks after dosing to assess hC3 expression levels, using pre-dose control as the control. During the experiment, no animals showed signs of death or dying. Clinical observation revealed no significant abnormalities in any of the animals. Changes in hC3 levels are shown in Figure 6A.
另外两组转基因小鼠体内活性测试,hC3,NM-HU-2000079小鼠单次皮下给予3mg/kg的C3 RNAi剂,其中,一组药物为AL0167016、AL0167017、AL0167018、AL0167019、AL0167020、AL0167021和AL0167022,另一组药物为AL0167023、AL0167024、AL0167025和AL0167026,两组实验分别给药后第1周、2周、3周、4周和5周取小鼠血液(眼球取血,取血后1h内送检),hC3表达水平,以给药前为对照,检测C3的敲低水平。实验期间,所有动物未见死亡或濒死症状。临床观察所有动物均未见明显异常。hC3变化水平见图6B和6C。Two additional groups of transgenic mice were tested for in vivo activity. hC3, NM-HU-2000079 mice were subcutaneously administered a single 3 mg/kg dose of C3 RNAi. One group received AL0167016, AL0167017, AL0167018, AL0167019, AL0167020, AL0167021, and AL0167022, while the other group received AL0167023, AL0167024, AL0167025, and AL0167026. Blood samples were collected from the eyeballs of the mice at 1, 2, 3, 4, and 5 weeks after administration, and hC3 expression levels were measured. C3 knockdown levels were measured using pre-dose control as the control. During the experiment, no animals showed signs of death or dying. Clinical observations revealed no significant abnormalities in any of the animals. The changes in hC3 levels are shown in Figures 6B and 6C.
由图6可以得出,与给药前相比,在药物干预后第7天所有C3 siRNA的敲低效果达到最低,第14天逐渐缓慢回升,在第35天检测期内血液中hC3的水平一直有明显的敲低。所有受试组均未出现药物相关死亡,药物干预都可显著降低小鼠血液中hC3水平,所有受试组与溶媒对照组(NC组)相比,均有50%-70%不同程度的敲低。As shown in Figure 6, compared to pre-dose levels, the knockdown effect of all C3 siRNAs reached its lowest on day 7 after drug intervention, then gradually recovered on day 14. Blood hC3 levels remained significantly lower through day 35. No drug-related deaths occurred in any of the test groups, and drug intervention significantly reduced hC3 levels in the mice's blood. All test groups achieved varying degrees of knockdown, ranging from 50% to 70%, compared to the vehicle control group (NC group).
Claims (10)
Preferably, the oligonucleotide has a 5'-phosphate analogue modified nucleotide at the 5'end; preferably, the 5'-phosphate analogue modified nucleotide has a vinyl phosphonate modified nucleotide shown in formula (I), wherein R is selected from H, OH, fluorine, 2'-methoxy, 2'-acetylamino, 2'-aminoethyl and 2'-O-methoxyethyl, and Base represents a nucleic acid base selected from A, G, C, T and U; preferably, the 5'-phosphate analogue modified nucleotide has a vinyl phosphate modified nucleotide shown in formula (II), wherein R is selected from H, OH, fluorine, 2'-methoxy, 2'-acetylamino, 2'-aminoethyl and 2'-O-methoxyethyl; more preferably, the 5'-phosphonate analogue modified nucleotide is APU shown in formula (III) or VPUm shown in formula (IV);
Preferably, the oligonucleotide comprises a 6-(3-(2-carboxyethyl)phenyl)purine modified nucleotide; preferably, the oligonucleotide comprises formula M, which is a 2'-O-methyl-6-(3-(2-carboxyethyl)phenyl)-purine nucleotide represented by formula (V);
Preferably, the oligonucleotide comprises a uridine-2'-phosphate (U-2'5') represented by formula (VI), a guanosine-2'-phosphate (G-2'5') represented by formula (VII); a cytidine-2'-phosphate (C-2'5') represented by formula (VIII); adenosine-2'-phosphate (A-2'5') represented by formula (IX) and a thymidine-2'-phosphate (T-2'5') represented by formula (X);
Preferably, the targeting ligand is L96;
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| US20030096775A1 (en) * | 2001-10-23 | 2003-05-22 | Isis Pharmaceuticals Inc. | Antisense modulation of complement component C3 expression |
| CN115176004A (en) * | 2019-10-22 | 2022-10-11 | 阿尔尼拉姆医药品有限公司 | Complement component C3 iRNA compositions and methods of use thereof |
| WO2022251484A1 (en) * | 2021-05-26 | 2022-12-01 | Apellis Pharmaceuticals, Inc. | Treatment of complement-mediated disorders |
| US20230272382A1 (en) * | 2020-03-05 | 2023-08-31 | Alnylam Pharmaceuticals, Inc. | COMPLEMENT COMPONENT C3 iRNA COMPOSITIONS AND METHODS OF USE THEREOF FOR TREATING OR PREVENTING COMPLEMENT COMPONENT C3-ASSOCIATED DISEASES |
| WO2023240190A2 (en) * | 2022-06-08 | 2023-12-14 | Sirnaomics, Inc. | Products and compositions |
| CN117295819A (en) * | 2021-04-20 | 2023-12-26 | 阿斯利康(爱尔兰)有限公司 | Compositions and methods for inhibiting expression of complement component 3 |
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| US20030096775A1 (en) * | 2001-10-23 | 2003-05-22 | Isis Pharmaceuticals Inc. | Antisense modulation of complement component C3 expression |
| CN115176004A (en) * | 2019-10-22 | 2022-10-11 | 阿尔尼拉姆医药品有限公司 | Complement component C3 iRNA compositions and methods of use thereof |
| US20230272382A1 (en) * | 2020-03-05 | 2023-08-31 | Alnylam Pharmaceuticals, Inc. | COMPLEMENT COMPONENT C3 iRNA COMPOSITIONS AND METHODS OF USE THEREOF FOR TREATING OR PREVENTING COMPLEMENT COMPONENT C3-ASSOCIATED DISEASES |
| CN117295819A (en) * | 2021-04-20 | 2023-12-26 | 阿斯利康(爱尔兰)有限公司 | Compositions and methods for inhibiting expression of complement component 3 |
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