WO2025223537A1 - Dsrna, use thereof, and preparation method therefor - Google Patents
Dsrna, use thereof, and preparation method thereforInfo
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- WO2025223537A1 WO2025223537A1 PCT/CN2025/091175 CN2025091175W WO2025223537A1 WO 2025223537 A1 WO2025223537 A1 WO 2025223537A1 CN 2025091175 W CN2025091175 W CN 2025091175W WO 2025223537 A1 WO2025223537 A1 WO 2025223537A1
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
- A61K31/712—Nucleic acids or oligonucleotides having modified sugars, i.e. other than ribose or 2'-deoxyribose
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
- A61K31/7125—Nucleic acids or oligonucleotides having modified internucleoside linkage, i.e. other than 3'-5' phosphodiesters
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
- A61K31/713—Double-stranded nucleic acids or oligonucleotides
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P3/00—Drugs for disorders of the metabolism
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
Definitions
- This invention relates to modulators, such as double-stranded RNA (dsRNA) activators or antisense polynucleotide formulations, that can modulate, for example, the expression and/or activity of inhibin subunit ⁇ E (INHBE).
- dsRNA double-stranded RNA
- INHBE inhibin subunit ⁇ E
- the invention also relates to methods for inhibiting INHBE expression and/or activity using such modulators, and methods for preventing or treating INHBE-related diseases in subjects (such as metabolic disorders or obesity or cardiovascular diseases such as metabolic syndrome).
- lipid metabolism disorders include lifestyle modifications, diet, exercise, and the use of lipid-lowering drugs (such as statins) and other medications.
- lipid-lowering drugs such as statins
- these therapies and treatments are often limited by patient adherence, are not always effective, can even cause side effects, and lead to drug interactions. Therefore, there is a need in the field for alternative therapies for patients with metabolic disorders.
- INHBE Inhibin subunit ⁇ E
- TGF- ⁇ transforming growth factor- ⁇ family.
- INHBE is primarily expressed in the liver and is a liver factor that has been shown to be positively correlated with insulin resistance and body mass index in humans.
- Quantitative real-time PCR analysis has also shown increased INHBE gene expression in liver samples from insulin-resistant humans.
- increased INHBE gene expression has also been shown in the liver of a well-established animal model of metabolic disorder (i.e., type 2 diabetes, db/db mouse model). Inhibition of INHBE expression in db/db mice suppressed weight gain; the weight loss was due to a reduction in fat rather than lean muscle.
- INHBE can serve as an effective target for treating metabolic disorders.
- Figure 1 shows the effect of INHBE siRNA on the body weight of humanized INHBE mice induced by a high-fat diet.
- Figure 2 shows the effect of INHBE siRNA on body fat in humanized INHBE mice induced by a high-fat diet.
- RNAi inhibitors capable of effectively reducing the expression and/or activity of INHBE.
- the RNAi activator of this invention can affect RNA-induced silencing complex (RISC)-mediated cleavage of the INHBE gene mRNA, thereby inhibiting INHBE expression in cells.
- RISC RNA-induced silencing complex
- this invention can specifically inhibit the expression of the INHBE gene (e.g., in hepatocytes and/or adipocytes), which may help prevent or treat INHBE-related diseases in subjects (such as metabolic disorders or obesity, or cardiovascular diseases such as metabolic syndrome).
- the dsRNAs targeting INHBE of this invention can more effectively knock out INHBE (e.g., in hepatocytes and/or adipocytes), thereby specifically inhibiting INHBE gene expression.
- This invention provides a double-stranded ribonucleic acid (dsRNA) activator for inhibiting the expression of INHBE target genes in cells, such as adipocytes and/or liver cells; wherein the dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the sense strand comprises at least 15 consecutive nucleotides, for example, 15, 16, 17, 18, or 19, that differ from any sense nucleotide sequence in Table 1 by no more than 0, 1, 2, or 3 nucleotides, and the antisense strand comprises at least 15 consecutive nucleotides, for example, 15, 16, 17, 18, 19, 20, or 21, that differ from any antisense nucleotide sequence in Table 1 by no more than 0, 1, 2, or 3 nucleotides, and the antisense strand comprises at least 15 consecutive nucleotides, for example, 15, 16, 17, 18, 19, 20, or 21, that differ from any antisense nucleotide sequence in Table 1 by no more than 0, 1, 2, or 3 nu
- these dsRNA activators further include, for example, one or more ligands conjugated to at least one strand of the dsRNA, the ligands being capable of targeted delivery of the dsRNA to liver tissue or hepatocytes, for example, via a linker, such as a bivalent or trivalent branched linker conjugated to at least one strand of the dsRNA activator, such as a ligand targeting ASPGR, such as a GalNAc ligand comprising GalNAc or a derivative thereof.
- a linker such as a bivalent or trivalent branched linker conjugated to at least one strand of the dsRNA activator, such as a ligand targeting ASPGR, such as a GalNAc ligand comprising GalNAc or a derivative thereof.
- the present invention also provides a cell comprising the dsRNA activator described herein.
- the present invention provides a pharmaceutical composition
- a pharmaceutical composition comprising the dsRNA activator described herein and optionally a pharmaceutically acceptable carrier.
- This invention provides a pharmaceutical combination comprising the dsRNA activator described herein and one or more other therapeutic agents, which are any therapeutic agents effective, for example, in preventing or treating INHBE-related diseases and/or conditions, covering a wide range of therapeutic agents for treating metabolic disorders or obesity or cardiovascular diseases.
- This invention provides the use of the dsRNA activators and/or pharmaceutical compositions and/or drug combinations described herein in the preparation of medicaments for treating diseases and/or conditions caused by INHBE gene expression.
- This invention provides the use of the dsRNA activator described herein in the preparation of a drug that inhibits INHBE gene expression in cells, preferably inhibiting INHBE expression in liver tissue or hepatocytes.
- the present invention provides a method for preventing or treating diseases and/or conditions caused by INHBE gene expression, the method comprising administering an effective amount of the dsRNA activator and/or pharmaceutical composition and/or combination of drugs described herein to a subject in need.
- the present invention provides a method for inhibiting INHBE gene expression, the method comprising contacting cells, preferably hepatocytes, with an effective amount of the dsRNA activator and/or pharmaceutical composition and/or drug combination described herein, and optionally maintaining the cells produced in this step for a period of time sufficient to degrade the mRNA transcript of the INHBE gene, thereby inhibiting the expression of the INHBE gene in cells such as hepatocytes.
- the term “about” or “approximately” means to encompass a range of numerical values having a lower limit of 1%, 2%, 3%, 4%, or 5% smaller than the specified numerical value and an upper limit of 1%, 2%, 3%, 4%, or 5% larger than the specified numerical value. It should be understood that the specific value referred to by the term “about” or “approximately” is itself specific and preferably disclosed.
- the terms “comprising” or “including” mean to include the stated elements, integers, or steps, but do not exclude any other elements, integers, or steps.
- the terms “comprising” or “including” are used, unless otherwise specified, they also cover situations consisting of the stated elements, integers, or steps. For example, when referring to a justice chain that “comprising” a specific sequence, it is also intended to cover a justice chain consisting of that specific sequence.
- regulator is a molecule that can reduce or increase INHBE expression and/or activity.
- the regulator is a molecule that can reduce or inhibit INHBE expression and/or activity, such as an RNAi activator or a dsRNA activator.
- INHBE transforming growth factor- ⁇
- INHBE mRNA is mainly expressed in the liver (Fang J. et al. Biochemical & Biophysical Res. Comm. 1997; 231(3):655-61), and INHBE remnants regulate stem cell growth and differentiation. INHBE is also known as inhibin ⁇ E chain, activin ⁇ E, inhibin ⁇ E subunit, inhibin ⁇ E and MGC4638.
- the sequence of human INHBE mRNA transcript can be found, for example, in GenBank Accession No.
- GL:1877089956 (NM_031479.5; SEQ ID NO:664; reverse complementary sequence SEQ ID NO:665).
- the sequence of mouse INHBE mRNA can be found, for example, in GenBank Accession No. GL:1061899809 (NM_008382.3).
- the sequence of rat INHBE mRNA can be found, for example, in GenBank Accession No. GL:1061899809 (NM_008382.3).
- No. GI: 148747589 (NM_031815.2).
- Examples of other INHBE mRNA sequences are available in publicly available databases such as GenBank, UniProt, and OMIM.
- a “target sequence” refers to a continuous portion of the nucleotide sequence of an mRNA molecule formed during INHBE gene transcription, containing the mRNA as a primary transcription product of RNA processing.
- the target portion of the sequence will be at least long enough to serve as a substrate for dsRNA-directed cleavage at or near that portion of the nucleotide sequence of the mRNA molecule formed during INHBE gene transcription.
- the length of the target sequence can be, for example, 15-36 nucleotides (“nt”), or any sub-length therein.
- the length of the target sequence can be 15-30 nt, 15-26 nt, 15-23 nt, 15-22 nt, 15-21 nt, 15-20 nt, 15-19 nt, 15-18 nt, 15-17 nt, 18-30 nt, 18-26 nt, 18-23 nt, 18-22 nt, 18-21 nt, 18-20 nt, 18 nt, 19-30 nt, 19-26 nt,
- the target sequence is 19-23 nucleotides, 19-22 nucleotides, 19-21 nucleotides, 19-20 nucleotides, 19 nucleotides, 20-30 nucleotides, 20-26 nucleotides, 20-25 nucleotides, 20-24 nucleotides, 20-23 nucleotides, 20-22 nucleotides, 20-21 nucleotides, 20 nucleotides, 21-30 nucleotides, 21-26 nucleotides, 21-25
- the target sequence is preferably at least 18, 19, 20, or 21 nucleotides long. In some embodiments of the invention, the target sequence is about 19 to about 23 nucleotides long. In some embodiments of the invention, the target sequence is about 20 or 21 nucleotides long.
- G,” “C,” “A,” “T,” and “U” generally represent nucleotides containing guanine, cytosine, adenine, thymine, and uracil as bases, respectively, and unless otherwise specified, encompass both native and modified nucleotides.
- ribonucleotide or “nucleotide” can also refer to a modified nucleotide or a surrogate replacement moiety.
- guanine, cytosine, adenine, and uracil can be substituted with other moieties without substantially altering the base-pairing properties of oligonucleotides including those containing such substitution moieties.
- nucleotides containing inosine a nucleoside compound formed by the combination of hypoxanthine and ribose
- nucleotides containing adenine, cytosine, or uracil can pair with nucleotides containing adenine, cytosine, or uracil. Therefore, in the nucleotide sequence of the dsRNA characteristic of this invention, nucleotides containing uracil, guanine, or adenine can be substituted with nucleotides containing, for example, inosine.
- adenine and cytosine at any position in the oligonucleotide can be replaced by guanine and uracil, respectively, to form a G-U swinging base pairing with the target mRNA.
- Sequences containing such substitution moieties are suitable for the compositions and methods characteristic of the present invention.
- nucleotide sequence means a continuous nucleotide sequence, which can be a natural nucleotide or a modified nucleotide.
- dsRNA double-stranded RNA
- double-stranded RNA molecule refers to a complex of ribonucleic acid molecules having a double-stranded structure comprising two antiparallel and substantially complementary nucleic acid strands having “sense” and “antisense” orientations relative to the target RNA (i.e., the INHBE gene).
- the double-stranded RNA dsRNA
- the double-stranded RNA triggers the degradation of the target RNA (e.g., mRNA) through a post-transcriptional gene silencing mechanism referred to herein as RNA interference or RNAi.
- the dsRNA of the invention is a small interfering RNA (siRNA).
- siRNA small interfering RNA
- it when referred to herein as a dsRNA activator, it may also comprise a ligand linked to the double-stranded structure, the ligand facilitating the delivery of the dsRNA to a target tissue or target cell.
- siRNA refers to a class of double-stranded RNA molecules that can mediate the silencing of their complementary target RNA (e.g., mRNA, the transcript of a gene encoding a protein).
- target RNA e.g., mRNA, the transcript of a gene encoding a protein
- siRNA is typically double-stranded, consisting of an antisense strand complementary to the target RNA and a sense strand complementary to that antisense strand.
- mRNA is also referred to herein as the mRNA to be silenced.
- genes are also called target genes.
- the RNA to be silenced is an endogenous gene or a pathogen gene.
- antisense strand or "guide strand” refers to an oligonucleotide chain in dsRNA that contains a region substantially complementary to the target sequence (e.g., INHBE mRNA).
- sense chain or “follower chain” or “sense chain” refer to an oligonucleotide chain containing a region substantially complementary to the antisense chain as defined herein, which can complement the antisense chain to form dsRNA, and which can complement the antisense chain to form the double-stranded region of dsRNA.
- complementarity refers to the ability of an oligonucleotide or polynucleotide containing a first nucleotide sequence to hybridize with an oligonucleotide or polynucleotide containing a second nucleotide sequence under certain conditions and form a double-stranded structure.
- Those skilled in the art can determine the optimal complementarity of the two sequences and the conditions used to determine this complementarity based on the intended application of the hybridized oligonucleotide or polynucleotide.
- complementarity when describing the base pairing between the sense and antisense strands of RNAi, or between the antisense strand and the target sequence of RNAi, the terms "complementarity” or “complementarity” should be understood to cover not only 100% complementarity (i.e., perfect complementarity) but also less than 100% complementarity (i.e., substantially complementarity), that is, the presence of base mismatches in the complementary double-stranded nucleotide region that do not substantially affect the RNAi's intended function.
- the bases at that position on both strands are considered to be “complementarily paired” or “matched.”
- the purine base adenine (A) is complementary to the pyrimidine base thymine (T) or uracil (U);
- the purine base guanine (C) is complementary to the pyrimidine base cytosine (G).
- a mismatch refers to a situation in double-stranded nucleic acids where corresponding bases on one strand are not complementary to each other.
- nucleoside base “complementarity” encompasses Watson-Crick base pairing between unmodified and modified nucleobases (see, for example, Hirao et al. (2012) Accounts of Chemical Research, Vol. 45, p. 2055 and Bergstrom (2009) Current Protocols in Nucleic Acid Chemistry, Suppl. 37, 1.4.1).
- the expression “complementary” or “complementarity” associated with double-stranded RNAi activators is preferably not less than 70%, meaning that at least 70% of the base positions in the double-stranded region formed by complementary hybridization are complementary, i.e., the number of mismatched positions in the continuous nucleotide sequence forming the double-stranded region is less than 30%.
- the expression “complementary” or “complementarity” associated with double-stranded RNAi activators is preferably not less than 70%, meaning that at least 70% of the base positions in the double-stranded region formed by complementary hybridization are complementary, i.e., the number of mismatched positions in the continuous nucleotide sequence forming the double-stranded region is less than 30%.
- not less than 70% complementarity means that the double-stranded region forms no more than 6, 5, 4, 3, 2, 1, or 0 mismatched base pairs during hybridization.
- RNAi activators capable of calculating the complementarity of the continuous nucleotide sequence in the double-stranded region.
- the expression associated with RNAi activators, "complementary (antisense) sequence” to the target sequence, or “complementary (sense) sequence” to a portion of the antisense sequence can be “completely complementary” or “substantially complementary.” “Completely complementary” means that the two sequences have 100% complementarity.
- the two sequences may contain one or more, but typically no more than 30%, 20%, or 10%, mismatched base pairs in the hybridized duplex and still retain the ability to hybridize under conditions most relevant to their final application (e.g., repressing gene expression via a RISC pathway).
- perfect complementarity means perfect complementarity between the two strands. It should be understood that when referring to perfect complementarity of complementary regions or duplexes, it means perfect complementarity between two identical nucleotide chains that match at alignment.
- RNAi containing a 19-nucleotide-long sense oligonucleotide chain and a 21-nucleotide-long antisense oligonucleotide chain could still be considered “perfectly complementary” if the longer antisense oligonucleotide contains a 19-nucleotide sequence that is perfectly complementary to the shorter sense oligonucleotide.
- the term "complementary region” refers to a region on the antisense strand that is complementary (substantially complementary or perfectly complementary) to a sequence defined herein (e.g., a target sequence, such as the INHBE mRNA target sequence).
- a target sequence such as the INHBE mRNA target sequence
- mismatches can be located within the molecule or in terminal regions.
- the most tolerable mismatches are in terminal regions, such as within 5, 4, 3, 2, or 1 nucleotides at the 5' or 3' end of the dsRNA; for example, the first nucleotide at the 5' end of the antisense strand can tolerate a mismatch.
- the double-stranded RNA activator of the present invention comprises nucleotide mismatches in the antisense strand.
- the antisense strand of the double-stranded RNA activator of the present invention comprises no more than 4 mismatches with the target mRNA; for example, the antisense strand comprises 4, 3, 2, 1, or 0 mismatches with the target mRNA.
- the 5' end nucleotide of the antisense strand of the double-stranded RNA activator of the present invention is mismatched with the target mRNA, for example, the 5' end of the antisense strand of the double-stranded RNA activator of the present invention is U, regardless of whether the 3' end of the target mRNA is A, which pairs with U.
- the antisense strand of the double-stranded RNA activator of the present invention has no more than four mismatches with the sense strand; for example, the antisense strand contains four, three, two, one, or zero mismatches with the sense strand.
- the nucleotide mismatch is, for example, within five, four, or three nucleotides from the 3' end of the antisense strand or the corresponding 5' end of the sense strand. In some embodiments, the nucleotide mismatch is, for example, within five, four, or three nucleotides from the 3' end of the sense strand or the corresponding 5' end of the antisense strand. In another embodiment, the nucleotide mismatch is, for example, at the 3' end nucleotide of the sense or antisense strand.
- nucleotide overhang refers to at least one unpaired nucleotide that protrudes from the double-stranded structure or double-stranded region of dsRNA.
- a nucleotide overhang exists, for example, when the 3' end of one strand of dsRNA extends beyond the 5' end of the other strand, or vice versa.
- dsRNA may contain an overhang having at least one nucleotide; alternatively, the overhang may contain at least two, three, four, five, or more nucleotides.
- the nucleotide overhang may contain or consist of nucleotide/nucleoside analogs (including deoxynucleotides/nucleosides).
- One or more overhangs may be located on the sense strand, antisense strand, or any combination thereof. Additionally, one or more nucleotides of the overhang may be present at the 5' end, 3' end, or both ends of the antisense strand or sense strand of siRNA. In some embodiments, the overhang is located at the 3' end of the antisense strand, and is, for example, 1, 2, 3, 4, or 5 nucleotides, such as 2 nucleotides.
- “Flat-ended” or “flat-ended” means that there are no unpaired nucleotides at that end of the dsRNA, i.e., no nucleotide overhang.
- a “flat-ended” dsRNA is a double-stranded dsRNA along its entire length, meaning that there are no nucleotide overhangs at either end of the molecule.
- the dsRNA of this invention encompasses dsRNAs with flat ends at both the 5' and 3' ends.
- double-stranded region or “double-stranded body” or “double-stranded body region” are used interchangeably to refer to the double-stranded structure formed by the hybridization of the sense and antisense strands in dsRNA.
- nucleotides in each strand of a dsRNA molecule are ribonucleotides, but as described in detail herein, each or both strands may also contain one or more modified ribonucleotides, such as deoxyribonucleotides or chemically modified nucleotides.
- dsRNA may contain chemically modified ribonucleotides; dsRNA may contain substantial modifications at multiple nucleotide sites.
- modified nucleotide refers to a nucleotide that independently has a modified sugar moiety, a modified internucleotide bond, or a modified nucleobase, or any combination thereof.
- modified nucleotide encompasses substitution, addition, or removal of, for example, functional groups or atoms, of internucleotide bonds, sugar moieties, or nucleobases.
- Modifications of the active agents suitable for use in this invention include all types of modifications disclosed herein or known in the art.
- internucleotide bonds include phosphate groups that form phosphodiester bonds between adjacent nucleosides.
- modified internucleotide bond is defined as a bond that covalently links two nucleosides together, other than a phosphodiester (PO) bond.
- the nucleotide chain of the RNAi according to the invention may contain one or more internucleotide bonds modified from natural phosphodiester bonds.
- Modified internucleotide bonds contemplated according to the invention include, but are not limited to: thiophosphate bonds, dithiophosphate bonds, methylphosphate bonds, selenophosphate bonds, phosphoramidite bonds, etc.
- the modified internucleotide bond in the oligonucleotide used for the RNAi of the invention is a thiophosphate bond.
- ligand moiety refers to a chemical portion conjugated to the double strand of dsRNA that can alter the distribution, targeting, or half-life of dsRNA.
- dsRNA or “dsRNA activator” is mentioned herein, it also encompasses dsRNA containing a ligand moiety unless the context explicitly contradicts this description.
- siRNA siRNA containing a ligand moiety unless the context explicitly contradicts this description.
- the ligand moiety is a "GalNAc ligand.”
- GalNAc ligand refers to an asialic acid glycoprotein receptor (ASGPR) ligand containing a structural moiety of N-acetylgalactosamine (GalNAc) or a derivative thereof. This term encompasses monovalent, divalent, trivalent, tetravalent, and multivalent GalNAc ligands providing one, two, three, four, or more structural moieties of GalNAc or GalNAc derivatives.
- nucleotide sequences contained in the sense and/or antisense strands of dsRNA in this article the nucleotide sequences conjugated with ligands are also included unless the context clearly indicates otherwise.
- inhibitortion is used interchangeably with “reduction,” “silence,” “downregulation,” and other similar terms, and includes any level of inhibition.
- inhibitor INHBE refers to the inhibition of the activity or expression of any INHBE gene.
- inhibitor INHBE expression refers to the inhibition of the expression of any INHBE gene, as well as variants or mutants of the INHBE gene. Therefore, the INHBE gene can be a wild-type INHBE gene, a mutant INHBE gene, or a transgenic INHBE gene in the case of genetically manipulated cells, cell groups, or organisms.
- INHBE gene expression includes inhibition of any level of the INHBE gene, such as at least partial repression of INHBE gene expression.
- INHBE gene expression can be assessed based on the level or change in the level of any variable associated with INHBE gene expression, such as INHBE mRNA level or INHBE protein level. This level can be assessed in individual cells or in a group of cells (including, for example, samples derived from an individual). Inhibition can be assessed by a decrease in the absolute or relative level of one or more variables associated with INHBE expression compared to a control level.
- the control level can be any type of control level utilized in the art, such as baseline levels before administration or levels determined from similar untreated or controlled (e.g., buffer-only control or inert agent control) individuals, cells, or samples.
- INHBE-related disease or condition refers to a disease or condition caused by or associated with abnormal expression and/or activity of INHBE.
- INHBE-related disease or condition includes diseases, disorders, or conditions from which one may benefit from decreased INHBE gene expression, replication, or protein activity.
- an INHBE-related disease or condition is a metabolic disorder or obesity or cardiovascular disease, such as obesity or metabolic syndrome.
- metabolic disorder refers to any disease or condition that disrupts normal metabolism, which is the process of converting food into energy at the cellular level. Metabolic disorders affect a cell’s ability to carry out key biochemical reactions involving the processing or transport of proteins (amino acids), carbohydrates (sugars and starches), or lipids (fatty acids).
- dsRNA active agent refers to such an amount or dose of the dsRNA active agent or composition or combination of the present invention, which, when administered to a patient in a single or multiple doses, produces the intended effect in a patient requiring treatment or prevention. Depending on the intended effect, it may include “therapeutic effective amount” and “preventive effective amount”.
- “Therapeutic effective amount” refers to the amount that, at the required dose and for the required duration, effectively achieves the desired therapeutic outcome. Therapeutic effective amount is also a amount in which any toxic or harmful effects of the dsRNA active agent or composition or combination are less than the beneficial therapeutic effect. Relative to untreated subjects, "therapeutic effective amount” preferably inhibits a measurable parameter by at least about 30%, and more preferably at least about 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, or even 100%.
- prophylactic effective dose refers to the amount of medication administered at the required dose for the required duration to effectively achieve the desired preventive outcome. Typically, because prophylactic doses are administered to individuals before or at an early stage of the disease, the prophylactic effective dose will be less than the therapeutic effective dose.
- host cell refers to cells in which foreign nucleic acids have been introduced, including the progeny of such cells.
- mammals include, but are not limited to, domesticated animals (e.g., cattle, sheep, cats, dogs, and horses), primates (e.g., human and non-human primates such as monkeys), rabbits, and rodents (e.g., mice and rats).
- domesticated animals e.g., cattle, sheep, cats, dogs, and horses
- primates e.g., human and non-human primates such as monkeys
- rabbits e.g., mice and rats
- rodents e.g., mice and rats.
- the individual or subject is a human.
- pharmaceutical excipients refers to diluents, adjuvants (e.g., Freund's adjuvants (complete and incomplete)), excipients, carriers, or stabilizers that are applied together with the active substance.
- adjuvants e.g., Freund's adjuvants (complete and incomplete)
- excipients e.g., carriers, or stabilizers that are applied together with the active substance.
- composition refers to a composition that is present in a form that allows for the biological activity of the active ingredient contained therein, and that does not contain any additional ingredients that would have unacceptable toxicity to a subject administering the composition.
- pharmaceutical composition when referring to “pharmaceutical composition,” it also encompasses pharmaceutical preparations formulated as formulations or articles.
- drug combination refers to non-fixed combination products or fixed combination products, including but not limited to pillboxes and pharmaceutical compositions.
- non-fixed combination means that active ingredients (e.g., (i) the dsRNA active agent of the present invention, and (ii) other therapeutic agents) are administered to a patient simultaneously, without a specific time limit, or sequentially at the same or different time intervals, in separate entities, wherein such administration to the patient provides a preventive or therapeutically effective level.
- the dsRNA active agent of the present invention and other therapeutic agents used in the drug combination are administered at levels not exceeding those obtained when used alone.
- fixed combination means that two or more active agents are administered to a patient simultaneously in the form of a single entity.
- the dosage and/or time interval of the two or more active agents are selected so that the combined use of the components produces an effect greater than that achieved by using any one component alone in treating a disease or condition.
- the components may each be in a separate formulation, and their formulations may be the same or different.
- combination therapy refers to the administration of two or more therapeutic agents or modes of treatment to treat the disease described herein.
- administration includes the co-administration of these therapeutic agents in a substantially simultaneous manner, such as in a single capsule containing active ingredients in a fixed proportion.
- administration includes the co-administration of individual active ingredients in multiple or separate containers (e.g., tablets, capsules, powders, and liquids). Powders and/or liquids may be reconstituted or diluted to the desired dose prior to administration.
- such administration includes the sequential administration of each type of therapeutic agent at substantially the same time or at different times. In either case, the treatment regimen will provide the beneficial effect of the combination of drugs in treating the condition or symptom described herein.
- other therapeutic agents encompasses any therapeutic agent, other than the dsRNA active agent of the present invention or pharmaceutical compositions comprising it, that is effective in preventing or treating INHBE-related diseases and/or conditions (e.g., diseases and/or conditions caused by abnormal expression of the INHBE gene), and includes various therapeutic agents for treating metabolic disorders or obesity or cardiovascular diseases, such as obesity or metabolic syndrome.
- INHBE-related diseases and/or conditions e.g., diseases and/or conditions caused by abnormal expression of the INHBE gene
- metabolic disorders or obesity or cardiovascular diseases such as obesity or metabolic syndrome.
- treatment means to slow down, interrupt, block, alleviate, stop, reduce, or reverse the progression or severity of existing symptoms, conditions, illnesses, or diseases.
- prevention includes the suppression of the occurrence or development of a disease or condition or the symptoms of a particular disease or condition.
- vector refers to a nucleic acid molecule capable of replicating another nucleic acid linked to it. This term includes vectors that function as self-replicating nucleic acid structures as well as vectors that bind to the genome of a host cell that has already been introduced therein. Some vectors are capable of directing the expression of nucleic acids operatively linked to them. Such vectors are referred to herein as "expression vectors.”
- tissue samples refers to a collection of cells or fluids obtained from a patient or subject.
- the source of the tissue or cell sample can be solid tissue, such as fresh, frozen, and/or preserved organ or tissue samples, biopsy samples, or puncture samples; blood or any blood component; body fluids, such as cerebrospinal fluid, amniotic fluid, peritoneal fluid, or interstitial fluid; or cells from any stage of pregnancy or development in the subject.
- Tissue samples may contain compounds that are naturally occurring and do not mix with tissues, such as preservatives, anticoagulants, buffers, fixatives, nutrients, antibiotics, etc.
- RNAi activators for inhibiting INHBE, such as dsRNA activators.
- the dsRNA activator is siRNA.
- the siRNA comprises a double-stranded ribonucleic acid (dsRNA) molecule for inhibiting the expression of the INHBE gene in cells such as hepatocytes in a subject (e.g., mammals, such as individuals susceptible to INHBE-related diseases or conditions).
- dsRNA double-stranded ribonucleic acid
- RNA interference Intrinsic RNAi (RNA interference) mechanisms in organisms typically involve a series of processes, including: Dicer processing long dsRNA into short 19-21 base pairs (bp) siRNA; siRNA binding to Ago protein to form an RNA-induced silencing complex (RISC); Ago protein cleaving the sense strand of the siRNA and releasing it; subsequently, the mature RISC bound to the antisense strand cleaves the mRNA that is anticomplementary to the antisense strand through a sequence complementation mechanism. Based on this RNA interference mechanism, various artificial RNAi molecules with different structures have been developed. These structures can enter the RNAi pathway at different stages to achieve sequence-specific cleavage of target gene transcripts.
- RISC RNA-induced silencing complex
- RNAi molecules with such structures include, for example, siRNA molecules having a double-stranded region (and optionally one or two overhangs), long-chain siRNA molecules that can serve as substrates for the Dicer enzyme, short hairpin RNA (shRNA) that can be processed by Dicer to produce siRNA structures, and long single-stranded siRNA molecules containing only the antisense strand. It is understood that these molecular forms all fall within the scope of the RNAi activators of this invention.
- the dsRNA activators of this disclosure inhibit the expression of the INHBE gene (e.g., the human INHBE gene) by at least about 40%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, or about 94% in cells, such as in hepatocytes, such as in human primary hepatocytes, as determined by, for example, PCR or by protein-based methods (e.g., by immunofluorescence analysis, using, for example, Western blotting or flow cytometry).
- siRNA including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands
- inhibition of expression is determined in suitable biological cell lines using dsRNA, such as siRNA, at concentrations of, for example, about 10 nM, about 1 nM, about 0.1 nM, or about 0.01 nM, by the qPCR method provided herein.
- inhibition of expression is determined in suitable biological cell lines using the qPCR method provided herein, with, for example, serially diluted concentrations (e.g., starting at 100 nM) of dsRNA, such as siRNA.
- the dsRNA active agents of this disclosure such as siRNAs (including siRNAs containing modified nucleotides and siRNAs containing modified nucleotides and ligands), have a low off-target risk, for example, both the sense and antisense strands have a low off-target risk.
- the dsRNA active agents of this disclosure such as siRNAs (including siRNAs containing modified nucleotides and siRNAs containing modified nucleotides and ligands), have a lower off-target risk than control siRNAs, for example, compared to known control siRNAs, such as AD-1708473 in WO2023003922A1.
- the dsRNA activators of this disclosure can be freely taken up by hepatocytes and inhibit the expression of the INHBE gene in hepatocytes, such as human primary hepatocytes, for example, by determining the inhibition of expression in a suitable biological cell line using, for example, serially diluted concentrations (e.g., starting concentration of 500 nM) of dsRNA, such as siRNA, as provided herein by the qPCR method.
- the dsRNA activators of this disclosure are capable of effectively inhibiting the expression of the INHBE gene in vivo, for example, in liver tissue or hepatocytes.
- the dsRNA activators of the present invention such as siRNA activators (particularly siRNA activators with specific modifications), have better inhibitory effects on INHBE in vivo, for example, their inhibitory level on INHBE mRNA in vivo is higher than their expected inhibitory effect on INHBE mRNA in in vitro screening.
- the dsRNA activator of this disclosure such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), inhibits the expression of the INHBE gene (e.g., the human INHBE gene) in vivo (e.g., in liver tissue, such as in mouse liver tissue) by at least about 40%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, or about 90%, for example by a single subcutaneous administration to mice or by detection of mouse liver tissue homogenate, as described in Example 10.
- siRNA including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands
- the dsRNA active agents of this disclosure such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), exhibit long-lasting inhibitory effects on the target gene INHBE, for example, maintaining inhibition of the target gene INHBE 1 week, 2 weeks, 3 weeks, or 5 weeks after in vitro contact with cells or in vivo administration.
- the dsRNA active agents of this disclosure such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), exhibit long-lasting inhibition (knockdown) of the target gene INHBE in vivo, for example, maintaining inhibition of the target gene INHBE 1 week, 2 weeks, 3 weeks, or 5 weeks after administration.
- the dsRNA active agents of this disclosure are effective in treating or reducing obesity in patients, for example, maintaining or reducing patient weight and/or body fat, for example, their effects are superior to or comparable to known control siRNAs (e.g., AD-1708473 or AD-1708473.1 in WO2023003922A1).
- the dsRNA active agents such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), have a long-lasting effect, for example, remaining effective in treating patient obesity, for example, maintaining or reducing patient weight and/or body fat, even 1 week, 2 weeks, 3 weeks, or 60 days after the last administration.
- the dsRNA activators of this disclosure such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), exhibit in vivo inhibitory and/or therapeutic effects (e.g., weight loss and/or body fat reduction) on the target gene INHBE that exceed expectations based on in vitro screening assays, i.e., they have better target gene inhibitory activity and/or therapeutic effects in vivo compared to the activity expected during in vitro screening.
- siRNA including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands
- the dsRNA activator of the present invention has the properties described in (i) and (ii), (i) and (iii), or (i), (ii) and (iii):
- the dsRNA activator inhibits INHBE mRNA expression in hepatocytes, but at a level lower than that of a known control siRNA, such as AD-1708473 in WO2023003922A1, for example, by using the qPCR method provided herein, in suitable biological cell lines (e.g., in hepatocytes such as Hep3B), to determine the inhibition of expression with, for example, a concentration of about 1 nM or about 0.1 nM of dsRNA, such as siRNA (e.g., nucleotide-modified siRNA), as described in Example 3;
- siRNA e.g., nucleotide-modified siRNA
- the dsRNA activator inhibits INHBE mRNA expression in hepatocytes, but at a level lower than that of a known control siRNA, such as AD-1708473.1 in WO2023003922A1, for example, by the qPCR method provided herein, in suitable biological cell lines (e.g., in hepatocytes such as human primary hepatocytes or monkey primary hepatocytes), using, for example, different concentrations such as serially diluted concentrations (e.g., 100 nM starting, 5-fold or 10-fold serial dilutions; or 500 nM 4-fold serial dilutions) or using, for example, 100 nM, 10 nM, 1 nM or 0.1 nM concentrations of dsRNA, such as siRNA (e.g., siRNA with nucle
- the dsRNA activator inhibits INHBE mRNA expression in vivo at a level higher than that of a known control siRNA, such as AD-1708473.1 in WO2023003922A1, for example by the in vivo detection methods described herein; in some embodiments, the method includes extracting liver tissue from an animal, such as a mouse, to which the dsRNA activator of the present invention has been administered, and determining the inhibition of expression by PCR methods provided herein (e.g., the method described in Example 10).
- the dsRNA activators of this disclosure exhibit lower in vitro inhibitory effects on the target gene INHBE than known control siRNAs, such as AD-1708473.1 in WO2023003922A1, but are superior to the same control in vivo in terms of inhibitory and/or therapeutic effects (e.g., reduction of weight and/or body fat) on the target gene INHBE.
- the dsRNA activator comprises an antisense strand containing a complementary region that is complementary (substantially complementary or fully complementary) to at least a portion (e.g., a target sequence) of the mRNA formed during INHBE gene expression.
- the length of the complementary region is about 15 to 30 nucleotides, such as 16 to 30, 17 to 30, or 18 to 30 nucleotides (e.g., lengths of about 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, or 15 nucleotides).
- the length of the complementary region is between 18 and 23 nucleotides. In some embodiments, the length of the complementary region is 19 to 23 nucleotides.
- the length of the complementary region is 18 to 21 nucleotides. In some embodiments, the length of the complementary region is 18, 19, 20, or 21 nucleotides. In some embodiments, the length of the complementary region is 15, 16, 17, 18, 19, or 20 nucleotides.
- the antisense strand is complementary to the mRNA target sequence starting from the second nucleotide from the 5' end. In some embodiments, the complementary region of the antisense strand comprises the second nucleotide from the 5' end to the 3rd, 2nd, or 1st nucleotide from the 3' end.
- the complementary region of the antisense strand comprises all antisense strand nucleotides starting from the second nucleotide from the 5' end. In some embodiments, the complementary region of the antisense strand comprises at least nucleotides 2-16, 2-17, 2-18, 2-19, 2-20, or 2-21 from the 5' end of the antisense strand. In some embodiments, the complementary region of the antisense strand comprises at least 2-19 consecutive nucleotides from the 5' end of the antisense strand. In some implementations, the complementary region of the antisense strand comprises, or is composed of, consecutive nucleotides at positions 2-19, 2-20, or 2-21, starting from the 5' end of the antisense strand.
- the dsRNA comprises two complementary RNA strands that form a double-stranded structure (double-stranded region or double-stranded region) under conditions that will cause the dsRNA to hybridize, namely the antisense strand and the sense strand.
- one strand of the dsRNA contains a complementary region (antisense complement) that is substantially or completely complementary to the target sequence. Therefore, the antisense complement of the dsRNA can be substantially or completely complementary to the target sequence.
- the target sequence can be derived from the sequence of mRNA formed during INHBE gene expression.
- the antisense complement is substantially complementary to the target sequence, for example, it is mismatched with the target sequence at 1, 2, 3, 4, or 5 nucleotides (preferably 1 or 2 nucleotides at the 5' and/or 3' ends, e.g., the first nucleotide at the 5' end of the antisense strand).
- the antisense complement is completely complementary to the target sequence.
- the other chain (the justice chain) contains regions complementary to the antisense chain, allowing the two chains to hybridize and form a bistranded structure (bistranded region) when combined under appropriate conditions.
- the antisense strand of the dsRNA is completely complementary to the corresponding portion of the target sequence. In some embodiments, the antisense strand of the dsRNA, from the second nucleotide from the 5' end to the first, second, or third nucleotide from the 3' end, is completely complementary to the corresponding portion of the target sequence. In some embodiments, the entire length of the antisense strand of the dsRNA, starting from the second nucleotide from the 5' end, is completely complementary to the corresponding portion of the target sequence.
- nucleotides 2-16, 2-17, 2-18, 2-19, 2-20, or 2-21 of the antisense strand of the dsRNA, starting from the 5' end are completely complementary to the corresponding portion of the target sequence. In some embodiments, consecutive nucleotides from positions 2-19, 2-20, or 2-21 of the antisense strand of the dsRNA, starting from the 5' end, are completely complementary to the corresponding portion of the target sequence.
- the antisense strand of the dsRNA has the same number of nucleotides as the target sequence and is completely complementary to the target sequence in all nucleotide sequences except for the first nucleotide at the 5' end, wherein the first nucleotide of the antisense strand is U or A. In some embodiments, the full length of the antisense strand is completely complementary to the target sequence.
- the corresponding portion of the target sequence refers to a consecutive nucleotide sequence in the target sequence that is completely complementary to the antisense strand.
- the target sequence is 21 nucleotides and its consecutive nucleotides from position 1 to 20 are completely complementary to the nucleotides from position 2 to 21 of the antisense strand
- the “corresponding portion of the target sequence” refers to the consecutive nucleotides from position 1 to 20 of the target sequence.
- the dsRNA described herein targets the INHBE gene sequence at or near the location of the INHBE genome mRNA shown in Table 1 (e.g., NM_031479.5).
- the dsRNA described herein targets any 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, or 35 consecutive nucleotides, such as 19-23, of the INHBE genome mRNA (e.g., NM_031479.5) or the nucleic acid sequence shown in SEQ ID NO:664 or its complementary sequence.
- the dsRNA described herein targets a nucleotide sequence (target sequence) of the mRNA of the INHBE gene selected from the following:
- INHBE mRNA at or near the location of the INHBE genome e.g., NM_031479.5
- Table 1 A continuous sequence of INHBE mRNA at or near the location of the INHBE genome (e.g., NM_031479.5) mRNA as shown in Table 1, for example, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34 or 35 consecutive nucleotides at or near the location;
- INHBE genome e.g., NM_031479.5
- INHBE genome e.g., NM_031479.5
- mRNA or nucleic acid sequences of SEQ ID NO: 664 numbers 35-55, 36-56, 40-60, 501-521, 503-523, 504-524, 507-527, 638-658, 880-900, 978-998, 980-1000, and 1096-11.
- the mRNA sequence targeted by the dsRNA described herein includes, or is composed of, the mRNA target sequence corresponding to the location of the INHBE gene shown in Table 1.
- the antisense strand of the dsRNA disclosed herein contains a complementary region that is completely, substantially, or at least partially complementary to the target sequence corresponding to the INHBE genome (e.g., NM_031479.5) mRNA location shown in Table 1.
- the antisense strand of the dsRNA disclosed herein contains a core sequence (complementary region) that is completely, substantially, or at least partially complementary to the mRNA sequence (target sequence) disclosed in Table 2.
- the INHBE mRNA target sequence targeted by the dsRNA described herein comprises or is composed of the nucleotide sequence shown in any of SEQ ID NO: 221-330.
- the target sequence comprises a continuous sequence of INHBE mRNA at or near the INHBE genome (e.g., NM_031479.5) mRNA location shown in Table 1.
- the antisense strand of the dsRNA has the same number of nucleotides as the INHBE target sequence (e.g., the target sequence shown in Table 2).
- the antisense strand of the dsRNA is fully complementary, substantially complementary, or at least partially complementary to the INHBE mRNA target sequence (e.g., the mRNA target sequence corresponding to the position shown in Table 1 or the mRNA target sequence shown in Table 2).
- the antisense strand of the dsRNA has the same number of nucleotides as or differs from the INHBE mRNA target sequence (e.g., the mRNA target sequence corresponding to the position shown in Table 1 or the mRNA target sequence shown in Table 2) by 1, 2, or 3 nucleotides.
- the antisense strand of the dsRNA is fully complementary to the INHBE mRNA target sequence (e.g., the mRNA target sequence corresponding to the position shown in Table 1 or the mRNA target sequence shown in Table 2).
- the antisense strand contains 1, 2, 3, 4, or 5 non-complementary sites (mismatches), for example, 1-3 nucleotide mismatches.
- the antisense strand of the dsRNA is completely complementary to the INHBE gene target sequence (e.g., the target sequence corresponding to the position shown in Table 1 or the mRNA target sequence shown in Table 2) in the region excluding the first nucleotide at the 5' end, and to the region excluding the first or second nucleotide at the 3' end of the target sequence.
- the first nucleotide at the 5' end of the antisense strand of the dsRNA is U or A, for example, U, to facilitate recognition by the Ago2 protein to form the RICS complex.
- the length of the positive and negative strands is independently 15-30 nucleotides, such as 17-27, 19-25, 18-24, 18-23, 19-22, or 19-21 nucleotides. In some embodiments, the length of the positive or negative strand is independently no more than 27, 26, 25, 24, 23, 22, 21, 20, or 19 nucleotides. In some embodiments, the length of the positive or negative strand is independently not less than 15, 16, 17, 18, or 19 nucleotides. In some embodiments, the length of the positive or negative strand is 18-21 nucleotides (e.g., 18, 19, 20, or 21 nucleotides), and the length of the negative strand is 19-22 nucleotides (e.g., 19, 20, 21, or 22 nucleotides).
- the length of the sense strand is 18 or 19 nucleotides, and the length of the antisense strand is 19-21 nucleotides. In some embodiments, the length of the sense strand is 19 nucleotides, and the length of the antisense strand is 21 nucleotides.
- the length of the double-stranded region is 15 to 30 nucleotide pairs. In some embodiments, the length of the double-stranded region is 15 to 25 nucleotide pairs or 16 to 25 nucleotide pairs. In some embodiments, the length of the double-stranded region is 16 to 24 nucleotide pairs or 17 to 24 nucleotide pairs. In some embodiments, the length of the double-stranded region is 17 to 23 nucleotide pairs or 18 to 23 nucleotide pairs. In some embodiments, the length of the double-stranded region is 16 to 22 nucleotide pairs, 17 to 22 nucleotide pairs, 18 to 22 nucleotide pairs, or 19 to 22 nucleotide pairs.
- the length of the double-stranded region is 16 to 21 nucleotide pairs, for example, 16, 17, 18, 19, 20, or 21 nucleotide pairs. In some embodiments, the length of the double-stranded region is 19 to 21 nucleotide pairs. In some implementations, the length of the double-stranded region is 18, 19, 20, or 21 nucleotide pairs, for example, 19 nucleotide pairs.
- the double-stranded region formed by the sense and antisense strands is completely complementary. In other embodiments, the double-stranded region formed by the sense and antisense strands is substantially complementary, and may contain one, two, three, four, or five non-complementary sites (mismatches). In some embodiments, the length of the completely complementary double-stranded region is at least 15, 16, 17, 18, or 19 nucleotides.
- the length of the completely complementary double-stranded region is between 15 and 25 nucleotides, 16 and 25 nucleotide pairs, 16 and 24 nucleotide pairs, 17 and 24 nucleotide pairs, 17 and 23 nucleotide pairs, 18 and 23 nucleotide pairs, or 19 and 22 nucleotides. In some embodiments, the length of the completely complementary double-stranded region is 16, 17, 18, 19, 20, or 21 nucleotides, for example, 19 nucleotides.
- the dsRNA described herein may further comprise one or more single-stranded nucleotide overhangs, for example, 1 to 4, 2 to 4, 1 to 3, 2 to 3, 1, 2, 3, or 4 nucleotides.
- dsRNA having at least one nucleotide overhang has better repressive properties relative to its blunt-ended counterpart.
- the nucleotide overhang may include or consist of nucleotide/nucleoside analogs comprising deoxynucleotides/nucleosides.
- the overhang may be on the sense strand, antisense strand, or any combination thereof.
- the overhanging nucleotide may be present at the 5' end, 3' end, or both ends of the antisense strand or sense strand of the dsRNA.
- one or both of the sense strand and the antisense strand include a 3' overhang and/or a 5' overhang having at least 1, 2, or 3 nucleotides; for example, one or both of the sense strand and the antisense strand include a 3' overhang and/or a 5' overhang having at least 1 nucleotide.
- at least one strand includes a 3' overhang or a 5' overhang having at least 1 nucleotide.
- at least one strand includes a 3' overhang or a 5' overhang having at least 2 nucleotides.
- at least one strand includes a 3' overhang or a 5' overhang having at least 3 nucleotides.
- the antisense strand has a 3' overhang of at least one nucleotide and/or a 5' overhang; for example, the antisense strand comprises a 3' overhang of one nucleotide and/or a 5' overhang. In some preferred embodiments, the antisense strand has a 3' overhang of at least two nucleotides and/or a 5' overhang; for example, the antisense strand comprises a 3' overhang of two nucleotides and/or a 5' overhang.
- the antisense strand has a 3' overhang of at least three nucleotides and/or a 5' overhang; for example, the antisense strand comprises a 3' overhang of three nucleotides and/or a 5' overhang. In a preferred embodiment, the antisense strand has a 3' overhang of one, two, or three nucleotides at the 3' end, for example, a 3' overhang of two nucleotides.
- the sense strand includes a 5' overhang with at least 1, 2, or 3 nucleotides
- the antisense strand includes a 3' overhang with at least 1, 2, or 3 nucleotides
- the antisense strand of the dsRNA has a 3' overhang, for example, a 2-nucleotide 3' overhang, and a blunt end at the 5' end.
- the present invention relates to a double-stranded RNA (dsRNA) activator for inhibiting the expression of repressin subunit ⁇ E (INHBE), wherein the dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the antisense strand is completely complementary to the corresponding portion of the target sequence of the INHBE gene at least from the 5' end at positions 2-19 (e.g., positions 2-20 or 2-21 or the full length), for example, wherein the first nucleotide at the 5' end of the antisense strand is A or U, such as U.
- dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the antisense strand is completely complementary to the corresponding portion of the target sequence of the INHBE gene at least from the 5' end at positions 2-19 (e.g., positions 2-20 or 2-21 or the full length), for example, wherein the
- the present invention relates to a double-stranded RNA (dsRNA) activator for inhibiting the expression of repressin subunit ⁇ E (INHBE), wherein the dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the antisense strand is at least partially complementary to the mRNA encoding INHBE.
- the antisense strand is completely complementary to the target sequence of the INHBE gene in the region except for the first nucleotide from the 5' end, wherein the first nucleotide from the 5' end of the antisense strand is A or U, for example, U.
- the dsRNA activator of the present invention comprises a sense strand and an antisense strand, wherein the sense strand comprises 19 nucleotides and the antisense strand comprises 21 nucleotides, wherein the antisense strand comprises a 3' overhang of 2 nucleotides compared to the sense strand, and wherein the sense strand and the antisense strand are completely complementary at 19 nucleotides, for example, at 19 consecutive nucleotides (e.g., at the 1st to 19th consecutive nucleotides of the antisense strand counting from the 5' end).
- the dsRNA of the present invention comprises a sense strand and an antisense strand forming a double-stranded region, wherein
- the positive strand contains or is 19 nucleotides.
- the antisense strand comprises or is 21 nucleotides and is completely complementary to the target sequence of the INHBE gene in the region except for the first nucleotide at the 5' end, wherein the first nucleotide from the 5' end of the antisense strand is A or U, for example U;
- the antisense strand contains a 3' overhang of 2 nucleotides compared to the sense strand, and the sense strand and the antisense strand are completely complementary over 19 consecutive nucleotides, for example, completely complementary over 1-19 consecutive nucleotides starting from the 5' end of the antisense strand.
- the invention relates to a double-stranded ribonucleic acid (dsRNA) activator for inhibiting the expression of repressin subunit ⁇ E (INHBE), wherein the dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the antisense strand comprises at least 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides differing from any antisense strand nucleotide sequence in Table 1 by no more than 3, 2, or 1 nucleotide, wherein the first nucleotide at the 5' end of the antisense strand is A or U, for example, U.
- dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the antisense strand comprises at least 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides differing from any antisense strand nucleotide sequence in Table 1 by no more than 3, 2, or 1 nucleot
- the dsRNA activator comprises a sense strand and an antisense strand, the sense strand comprising at least 15, 16, 17, 18, or 19 consecutive nucleotides differing by no more than 3 nucleotides from any nucleotide sequence of the sense strand in Table 1, and the antisense strand comprising at least 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides differing by no more than 3 nucleotides from any nucleotide sequence of the antisense strand in Table 1 (e.g., the antisense strand corresponding to the sense strand (i.e., the antisense strand under the same siRNA name as the sense strand)), wherein the first nucleotide at the 5' end of the antisense strand is A or U, for example, U.
- the dsRNA activator comprises a sense strand and an antisense strand, the sense strand comprising at least 15, 16, 17, 18, or 19 consecutive nucleotides differing by no more than 2 nucleotides from any nucleotide sequence of the sense strand in Table 1, and the antisense strand (e.g., corresponding to the sense strand (i.e., the antisense strand under the same siRNA name as the sense strand)) comprising at least 15, 16, 17, 18, or 19, 20, or 21 consecutive nucleotides differing by no more than 2 nucleotides from any nucleotide sequence of the antisense strand in Table 1, wherein the first nucleotide at the 5' end of the antisense strand is A or U, for example, U.
- the dsRNA activator comprises a sense strand and an antisense strand, the sense strand comprising at least 15, 16, 17, 18, or 19 consecutive nucleotides differing by no more than one nucleotide from any nucleotide sequence of the sense strand in Table 1, and the antisense strand (e.g., corresponding to the sense strand (i.e., the antisense strand under the same siRNA name as the sense strand)) comprising at least 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides differing by no more than one nucleotide from any nucleotide sequence of the antisense strand in Table 1, wherein the first nucleotide at the 5' end of the antisense strand is A or U, for example, U.
- the positive strand comprises a nucleotide sequence of at least 15, 16, 17, 18, or 19 consecutive nucleotides of the nucleotide sequence shown in any one of SEQ ID NO: 1-110. In some specific embodiments, the positive strand differs from the nucleotide sequence shown in any one of SEQ ID NO: 1-110 by no more than 1, 2, or 3 nucleotides. In some specific embodiments, the positive strand comprises or is composed of the nucleotide sequence shown in SEQ ID NO: 1-110.
- the antisense strand comprises a nucleotide sequence of at least 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides of the nucleotide sequence shown in any one of SEQ ID NO: 111-220. In some specific embodiments, the antisense strand differs from the nucleotide sequence shown in any one of SEQ ID NO: 111-220 by no more than 1, 2, or 3 nucleotides. In some specific embodiments, the antisense strand comprises or consists of the nucleotide sequence shown in any one of SEQ ID NO: 111-220.
- the dsRNA activator comprises a sense strand and an antisense strand, the sense strand comprising a nucleotide sequence selected from the nucleotide sequences of the sense strands in Table 1, and the antisense strand comprising a nucleotide sequence selected from the nucleotide sequences of the antisense strands in Table 1 (e.g., corresponding to the sense strand (i.e., the antisense strand under the same siRNA name as the sense strand)).
- the combination of the antisense and sense strands in the dsRNA activator is as shown in Table 1 for any combination of antisense and sense strands.
- the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and the antisense strand respectively comprise SEQ ID NO:1/111, SEQ ID NO:2/112, SEQ ID NO:3/113, SEQ ID NO:4/114, SEQ ID NO:5/115, SEQ ID NO:6/116, SEQ ID NO:7/117, SEQ ID NO:8/118, SEQ ID NO:9/119, SEQ ID NO:10/120, SEQ ID NO:11/121, SEQ ID NO:12/122, SEQ ID NO:N O:13/123 ⁇ SEQ ID NO:14/124 ⁇ SEQ ID NO:15/125 ⁇ SEQ ID NO:16/126 ⁇ SEQ ID NO:17/127 ⁇ SEQ ID NO:18/128 ⁇ SEQ ID NO:19/129 ⁇ SEQ ID NO:20/1 30.
- the antisense strand comprises at least 15, 16, 17, 18, or 19 consecutive nucleotides in the nucleotide sequences shown in SEQ ID NO:102/212, SEQ ID NO:103/213, SEQ ID NO:104/214, S
- the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and the antisense strand respectively comprise SEQ ID NO:1/111, SEQ ID NO:2/112, SEQ ID NO:3/113, SEQ ID NO:4/114, SEQ ID NO:5/115, SEQ ID NO:6/116, SEQ ID NO:7/117, SEQ ID NO:8/118, SEQ ID NO:9/119, SEQ ID NO:10/120, SEQ ID NO:11/121, and SEQ ID NO:12/122.
- the dsRNA activator comprises a sense strand and an antisense strand, wherein
- the sense strand comprises or is composed of the nucleotide sequence shown in SEQ ID NO:60
- the antisense strand comprises or is composed of the nucleotide sequence shown in SEQ ID NO:170; or
- the sense strand contains or is composed of the nucleotide sequence shown in SEQ ID NO:101
- the antisense strand contains or is composed of the nucleotide sequence shown in SEQ ID NO:211.
- the oligonucleotide used as the sense strand does not participate in direct complementary binding to the target sequence, and does not need to have perfectly complementary base pairing with the antisense oligonucleotide in the duplex region.
- the sense strand (passenger strand) according to the invention may include at least one or more of the following properties: substantially complementary to the consecutive nucleotides of the antisense strand in the duplex region with the antisense strand, for example, at least 70%, at least 80%, at least 90%, or 100% complementary; having one or more additional nucleotides forming a protrusion or loop relative to the consecutive nucleotides of the antisense strand in the duplex region; and having one or more nucleotide gaps or vacancies relative to the consecutive nucleotides of the antisense strand in the duplex region.
- the antisense strand serving as a guide RNAi for the specific binding of the target mRNA, may also contain sequences that are not 100% complementary to the consecutive nucleotide regions of the target sequence; for example, the complementarity may be at least 80%, at least 90%, or 95% complementary; however, in some cases, 100% complementarity is preferred.
- the sequence motif of the antisense strand when considering the sequence motif of the antisense strand to be complementary to the consecutive nucleotide regions of the target sequence, the presence of insertions and deletions is preferably not permitted.
- the mismatch when the complementary region is not perfectly complementary to the said consecutive nucleotide region, the mismatch may be located inside or at the end of that region, for example, a mismatch of 3, 2, or 1 nucleotides at the 5' and/or 3' ends.
- the antisense strand is complementary to the sense strand over at least 18 consecutive nucleotides.
- the antisense strand is complementary to the sense strand over 19 consecutive nucleotides (e.g., consecutive nucleotides 1-19 from the 5' end of the antisense strand), for example, perfectly complementary.
- the dsRNA activator is prepared or provided in the form of a salt, a mixed salt, or a free acid. In some embodiments, the dsRNA activator is prepared as a sodium salt. Such forms are within the scope of the invention disclosed herein.
- the dsRNA molecule according to the invention can be unmodified (i.e., containing naturally occurring RNA nucleosides), but can also be (and preferably) modified, as long as it retains the desired functional activity (i.e., capable of forming the desired double-stranded structure and allowing or mediating specific degradation of the target RNA via the RISC pathway).
- RNA modification can occur at the base moiety, sugar moiety, and/or phosphate ester linker of the nucleotide.
- modified RNAi activators can be constructed using methods known in the art, employing chemical synthesis and enzymatic ligation reactions.
- modified RNAi activators can be chemically synthesized using naturally occurring nucleotides or nucleotides with various modifications (designed to reduce off-target effects and/or increase the biological stability of the molecule, or increase the physical stability of the double-stranded structure formed between antisense and sense nucleic acids).
- At least one nucleotide of the dsRNA activator of the present invention is a modified nucleotide.
- substantially all nucleotides of the sense strand are modified nucleotides; or substantially all nucleotides of the antisense strand are modified nucleotides; or substantially all nucleotides of both the sense strand and the antisense strand are modified nucleotides.
- the dsRNA activator comprises one or more modified nucleotides.
- a “modified nucleotide” is a nucleotide other than a ribonucleotide (2’-hydroxynucleotide).
- at least 50% (e.g., at least 60%, at least 70%, at least 80%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100%) of the nucleotides are modified nucleotides.
- all or substantially all nucleotides of the dsRNA activator of the present invention are modified nucleotides.
- a dsRNA activator in which substantially all nucleotides are modified nucleotides refers to a dsRNA activator having a total of 4 or fewer (i.e., 0, 1, 2, 3, or 4) nucleotides that are native ribonucleotides in both the sense and antisense strands.
- a sense strand in which substantially all nucleotides are modified nucleotides refers to a sense strand in which 2 or fewer (i.e., 0, 1, or 2) nucleotides are native ribonucleotides in the sense strand.
- an antisense strand in which substantially all nucleotides are modified nucleotides refers to an antisense strand in which 2 or fewer (i.e., 0, 1, or 2) nucleotides are native ribonucleotides in the antisense strand.
- all nucleotides in the sense strand of the dsRNA activator are modified nucleotides and/or all nucleotides in the antisense strand are modified nucleotides; or all nucleotides in both the sense strand and the antisense strand are modified nucleotides.
- nucleotide modifications suitable for the dsRNA activator of the present invention encompass modifications to nucleoside bases, ribose moieties, and/or the phosphate backbone. Exemplary modifications can be found in PCT Publication WO 200370918, which is incorporated herein by reference in its entirety.
- nucleoside base modifications that can be used to generate dsRNA activators include the substitution of nucleotides containing uracil, guanine, or adenine with nucleotides containing, for example, inosine; and the substitution of adenine and cytosine in oligonucleotides with guanine and uracil, respectively, to form G-U Wobble base pairing with the target mRNA.
- modified nucleoside bases that can be used to generate RNAi activators include, but are not limited to: 5-fluorouracil, 5-bromouracil, 5-chlorouracil, 5-iodouracil, hypoxanthine, xantine, 4-acetylcytosine, 5-(carboxyhydroxymethyl)uracil, 5-carboxymethylaminomethyl-2-thiouracil, 5-carboxymethylaminomethyluracil, dihydrouracil, ⁇ -D-galactosylqueosine, inosine, N6-isopentenyladenine, 1-methylguanine, 1-methylinosine, 2,2-dimethylguanine, 2-methyladenine, 2-methylguanine, 3-methylcytosine, 5-methylcytosine, N6-adenine, 7 -Methylguanine, 5-methylaminomethyluracil, 5-methoxyaminomethyl-2-thiouracil, ⁇ -D-mannosyl
- ribosome modifications that can be used to generate dsRNA active agents include ribosome structures modified by replacing one of the following: a hexose ring (HNA), a threonose ring (TNA), locked nucleic acid (LNA, a bicyclic ring with a bimolecular bridge between the C2 and C4 carbons on the ribosome), or a non-locked nucleic acid (UNA, a ribosome lacking a bond between the C2 and C3 carbons).
- HNA hexose ring
- TAA locked nucleic acid
- LNA locked nucleic acid
- UNA non-locked nucleic acid
- usable sugar-modified nucleosides also include, for example, bicyclic hexose nucleic acids (WO 2011/017521) or tricyclic nucleic acids (WO 2013/154798).
- Modified nucleosides also include nucleosides in which the sugar portion is replaced by a non-sugar portion, such as in the case of peptide nucleic acids (PNA) or morpholino nucleic acids.
- Sugar modification also includes modifications by replacing the naturally occurring 2'-OH group on the ribosome ring of the RNA nucleoside with other groups.
- substituents can be introduced, for example, at the 2', 3', 4', or 5' positions of the sugar ring.
- the dsRNA activator of the present invention may comprise a 2'-sugar-modified nucleotide, such as a 2'-substituted nucleoside.
- 2'-substituted modified nucleosides are 2'-O-alkyl-RNA nucleoside, 2'-O-methyl-RNA nucleoside, 2'-alkoxy-RNA nucleoside, 2'-O-methoxyethyl-RNA nucleoside (MOE), 2'-amino-DNA nucleoside, 2'-fluoro-RNA nucleoside, and 2'-F-ANA nucleoside.
- MOE 2'-amino-DNA nucleoside
- 2'-fluoro-RNA nucleoside and 2'-F-ANA nucleoside.
- Other examples may be found, for example, in Freier and Altmann; Nucl.
- the RNAi activator according to the present invention comprises at least one 2'-modified nucleotide.
- the 2'-modification is selected from 2'-deoxy, 2'-fluorinated, 2'-O-methyl, 2'-O-methoxyethyl (2'-O-MOE), 2'-O-allyl, 2'-O-aminopropyl (2'-O-AP), 2'-O-dimethylaminoethyl (2'-O-DMAOE), 2'-O-dimethylaminopropyl (2'-O-DMAP), 2'-O-dimethylaminoethoxyethyl (2'-O-DMAEOE), and 2'-O-N-methylacetamido (2'-O-NMA).
- the RNAi activator according to the invention comprises at least one 2'-modified nucleoside selected from the following: 2'-O-alkyl-RNA nucleoside, 2'-O-methyl-RNA nucleoside, 2'-alkoxy-RNA nucleoside, 2'-O-methoxyethyl-RNA nucleoside (MOE), 2'-amino-DNA nucleoside, 2'-fluoro-RNA nucleoside and 2'-F-ANA nucleoside.
- 2'-O-alkyl-RNA nucleoside 2'-O-methyl-RNA nucleoside
- 2'-alkoxy-RNA nucleoside 2'-O-methoxyethyl-RNA nucleoside (MOE)
- MOE methoxyethyl-RNA nucleoside
- 2'-amino-DNA nucleoside 2'-fluoro-RNA nucleoside
- 2'-F-ANA nucleoside 2'-F-ANA nu
- the dsRNA activator according to the invention may optionally also comprise a chemical modification at the 5' and/or 3' ends, i.e., a non-nucleotide or nucleoside chemical moiety linked to the end of the oligonucleotide chain (sense and/or antisense strand) of RNAi.
- a chemical modification at the 5' and/or 3' ends i.e., a non-nucleotide or nucleoside chemical moiety linked to the end of the oligonucleotide chain (sense and/or antisense strand) of RNAi.
- Examples of chemical moieties linked to the 3' end of the oligonucleotide chain can be found, for example, in WO 2005/021749 and WO 2007/128477.
- Examples of chemical moieties linked to the 5' end of the oligonucleotide chain may include, but are not limited to, 5'-terminal phosphate ester modifications, such as 5'-(E)-vinylphosphonate (5'-(E)-VP), 5'-methylphosphonate (5'-MP), (S)-5'-C-methyl analogues, and 5'-thiophosphate (5'-PS).
- 5'-terminal phosphate ester modifications such as 5'-(E)-vinylphosphonate (5'-(E)-VP), 5'-methylphosphonate (5'-MP), (S)-5'-C-methyl analogues, and 5'-thiophosphate (5'-PS).
- At least one of the modified nucleotides is selected from the group consisting of: deoxynucleotides, 3'-terminal deoxythymidine (dT) nucleotides, 2'-O-methyl modified nucleotides, 2'-fluorine modified nucleotides, 2'-deoxy modified nucleotides, locked nucleotides, 2'-5'-linked ribonucleotides (3'-RNA), unlocked nucleotides, conformation-restricted nucleotides, restricted ethyl nucleotides, base-free nucleotides, 2'-amino modified nucleotides, 2'-O-allyl modified nucleotides, 2'-C-alkyl modified nucleotides, 2'-methoxyethyl modified nucleotides, 2'- O-alkyl modified nucleotides, morpholinonucleotides, aminophosphates, nucleotides, deoxyn
- At least one of the modified nucleotides in the dsRNA activator is selected from the group consisting of: nonlocked nucleotides (UNA), locked nucleotides (LNA), HNA, threonucleotides (TNA), CeNA, 2′-methoxyethyl, 2′-O-alkyl, 2′-O-allyl, 2′-C-allyl, 2′-fluoro, 2′-deoxy, and ethylene glycol; and combinations thereof.
- UNA nonlocked nucleotides
- LNA locked nucleotides
- HNA HNA
- TAA threonucleotides
- CeNA CeNA
- At least one of the modified nucleotides in the dsRNA activator is selected from the group consisting of: deoxynucleotides, 2′-O-methyl modified nucleotides, 2′-fluoro modified nucleotides, 2′-deoxy modified nucleotides, nucleotides comprising 2′ phosphate groups, and nucleotides comprising thiophosphate groups; and combinations thereof.
- the nucleotides in the antisense strand of the dsRNA activator of the present invention comprise 2'-methoxy (2'-O-methyl) modified nucleotides, for example, all nucleotides are 2'-methoxy modified nucleotides or 1-21 nucleotides are 2'-methoxy modified nucleotides, for example, 16 or 17 nucleotides are 2'-methoxy modified nucleotides.
- the nucleotides at positions 1, 3-5, 7-13, 15, and 17-21 from the 5' end of the antisense strand of the dsRNA activator of the present invention are 2'-methoxy modified nucleotides.
- the nucleotides at positions 1, 3-6, 8-11, 13, 15, and 17-21 from the 5' end of the antisense strand of the dsRNA activator of the present invention are 2'-methoxy modified nucleotides.
- the positive strand of the dsRNA activator of the present invention contains 2'-methoxy (2'-O-methyl) modified nucleotides, for example, all nucleotides are 2'-methoxy modified nucleotides or 1-19 nucleotides are 2'-methoxy modified nucleotides, for example, 15 or 16 nucleotides are 2'-methoxy modified nucleotides.
- the positive strand of the dsRNA activator of the present invention has nucleotides 1-6 and 10-19 from the 5' end of the positive strand of the positive strand of the dsRNA activator of the present invention having nucleotides 1-6 and 11-19 from the 5' end of the positive strand of the positive strand of the dsRNA activator of the present invention having nucleotides 2'-methoxy modified nucleotides.
- the antisense strand of the dsRNA activator of the present invention has nucleotides 1, 3-5, 7-13, 15 and 17-21 from the 5' end that are 2'-methoxy modified nucleotides, and the sense strand has nucleotides 1-6 and 10-19 from the 5' end that are 2'-methoxy modified nucleotides.
- the nucleotides at positions 1, 3-6, 8-11, 13, 15, and 17-21 of the antisense strand of the dsRNA activator of the present invention, starting from the 5' end are 2'-methoxy modified nucleotides
- the nucleotides at positions 1-6 and 11-19 of the sense strand, starting from the 5' end are 2'-methoxy modified nucleotides.
- the antisense strand of the dsRNA activator of the present invention contains 2'-fluorinated nucleotides, for example, 1-5 nucleotides are 2'-fluorinated nucleotides, for example, 4 or 5 nucleotides are 2'-fluorinated nucleotides.
- the 2nd, 6th, 14th, and 16th nucleotides from the 5' end of the antisense strand of the dsRNA activator of the present invention are 2'-fluorinated nucleotides.
- the 2nd, 7th, 12th, 14th, and 16th nucleotides from the 5' end of the antisense strand of the dsRNA activator of the present invention are 2'-fluorinated nucleotides.
- the sense strand of the dsRNA activator of the present invention contains 2'-fluorinated nucleotides, for example, 1-5 nucleotides are 2'-fluorinated nucleotides, for example, 3 or 4 nucleotides are 2'-fluorinated nucleotides.
- the 7th-9th or 7th-10th nucleotides from the 5' end of the sense strand of the dsRNA activator of the present invention are 2'-fluorinated nucleotides.
- the nucleotides at positions 2, 6, 14 and 16 of the antisense strand, counting from the 5' end are 2'-fluorinated nucleotides
- the nucleotides at positions 7-9 of the sense strand, counting from the 5' end are 2'-fluorinated nucleotides.
- the nucleotides at positions 2, 7, 12, 14 and 16 of the antisense strand, counting from the 5' end are 2'-fluorinated nucleotides
- the nucleotides at positions 7-10 of the sense strand, counting from the 5' end are 2'-fluorinated nucleotides.
- one or more nucleotides of the dsRNA activator are linked by a non-standard bond or backbone (i.e., a modified nucleotide bond or a modified backbone).
- the modified nucleotide bond is a covalent nucleotide bond containing a non-phosphate group.
- the modified nucleoside internucleotide bond or skeleton includes, but is not limited to: a 5'-thiophosphate group (represented herein as lowercase "s"), a chiral thiophosphate, a thiophosphate, a dithiophosphate, a triphosphate, an aminoalkyl phosphate triester, an alkylphosphonate (e.g., a methylphosphonate or a 3'-alkylenephosphonate), a chiral phosphonate, a hypophosphonate, a phosphoramide (e.g., a 3'-aminophosphoramide, an aminoalkylphosphoramide, or a thiophosphoramide), a thioalkyl-phosphonate, a thioalkyl phosphate, a morpholino bond, a borophosphate having a normal 3'-5' bond, a borophosphate analog having a 2'-5' bond, or
- the modified nucleoside internucleotide bond or skeleton does not contain a phosphorus atom.
- the modified nucleoside interbonds that do not contain phosphorus atoms include, but are not limited to: short-chain alkyl or cycloalkyl sugar interbonds, mixed heteroatom and alkyl or cycloalkyl sugar interbonds, or one or more short-chain heteroatom or heterocyclic sugar interbonds.
- the modified nucleoside interskeletons include, but are not limited to: siloxane skeletons, sulfide skeletons, sulfoxide skeletons, sulfone skeletons, formylacetyl and thioformylacetyl skeletons, methyleneformylacetyl and thioformylacetyl skeletons, olefin-containing skeletons, aminosulfonic acid skeletons, methyleneimino and methylenehydrazine skeletons, sulfonate and sulfonamide skeletons, amide skeletons, and other skeletons having mixed N, O, S, and CH2 components.
- the sense strand of the dsRNA activator may contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds.
- the antisense strand of the dsRNA activator may contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds.
- both the sense and antisense strands may independently contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds.
- the sense strand of the dsRNA activator may contain 1, 2, 3, or 4 phosphate-thioester bonds.
- the antisense strand of the dsRNA activator may contain 1, 2, 3, or 4 phosphate-thioester bonds.
- both the sense and antisense strands may independently contain 1, 2, 3, or 4 phosphate-thioester bonds.
- the sense strand of the dsRNA activator may contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds
- the antisense strand of the dsRNA activator may contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds
- both the sense and antisense strands may independently contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds.
- the sense strand of the dsRNA activator may contain 1, 2, 3, or 4 phosphate-thioester bonds
- the antisense strand of the dsRNA activator may contain 1, 2, 3, or 4 phosphate-thioester bonds
- both the sense and antisense strands may independently contain 1, 2, 3, or 4 phosphate-thioester bonds.
- the dsRNA activator's sense strand contains two phosphate-thioester nucleoside bonds. In some embodiments, these two phosphate-thioester nucleoside bonds are located between nucleotides at positions 1-3 starting from the 5' end of the sense strand. In some embodiments, the dsRNA activator's antisense strand contains four phosphate-thioester nucleoside bonds. In some embodiments, these four phosphate-thioester nucleoside bonds are located between nucleotides at positions 1-3 starting from the 5' end and between nucleotides at positions 1-3 starting from the 3' end of the antisense strand.
- the dsRNA activator contains two phosphate-thioester nucleoside bonds in the sense strand and four phosphate-thioester nucleoside bonds in the antisense strand. In some embodiments, the dsRNA activator contains two phosphate-thioester nucleoside bonds between nucleotides at positions 1-3 starting from the 5' end in the sense strand and four phosphate-thioester nucleoside bonds between nucleotides at positions 1-3 starting from the 5' end and 1-3 starting from the 3' end in the antisense strand.
- dsRNA activator can be found in, for example, those listed in WO2023044094A1, WO2023245060A2, or WO2018/027106, the entire contents of which are incorporated herein by reference.
- the modified nucleotides in the sense and antisense strands of the dsRNA activator have the following modification patterns:
- Nf any 2'-fluorine modified nucleotide
- Nfs any 2'-fluorine modified nucleoside-3' thiophosphate
- Nm any 2'-methoxynucleotide
- Nms any 2'-methoxynucleoside-3'-thiophosphate
- the modified nucleotides in the sense and antisense strands of the dsRNA activator have the following modification patterns:
- Nf any 2'-fluorine modified nucleotide
- Nfs any 2'-fluorine modified nucleoside-3' thiophosphate
- Nm any 2'-methoxynucleotide
- Nms any 2'-methoxynucleoside-3'-thiophosphate
- specific modification patterns of the present invention are particularly suitable for the dsRNA activators of the present disclosure.
- dsRNA activators of the present invention with specific modification patterns exhibit superior levels of inhibition against the target gene INHBE mRNA in vivo compared to control siRNA, although their levels of inhibition against the target gene INHBE mRNA are lower than those against control siRNA in in vitro screening.
- specific nucleotide sequences of the sense and antisense strands are combined with specific modification patterns (optionally also including ligands of the present disclosure) to obtain dsRNA activators having one or more of the following characteristics:
- control siRNAs e.g., AD-1708473 or AD-1708473.1 in WO2023003922A1
- reducing weight and/or body fat e.g., AD-1708473 or AD-1708473.1 in WO2023003922A1
- It has a long-lasting therapeutic effect in vivo, such as a therapeutic effect on obesity, such as the ability to maintain a long-lasting effect on reducing the patient's weight and/or body fat; in some embodiments, it can still effectively treat the patient's obesity 1 week, 2 weeks, 3 weeks or 60 days after the last administration, such as maintaining the patient's weight and/or body fat, or reducing the patient's weight and/or body fat.
- the antisense strand of the dsRNA activator comprises any modified nucleotide sequence of the antisense strand in Table 2 of the specification, and/or the sense strand comprises any modified nucleotide sequence of the sense strand in Table 2 of the specification.
- the combination of modified antisense and sense strands in the dsRNA activator is shown in Table 2 as any combination of antisense and sense strands.
- the dsRNA activator is any of the dsRNA activators shown in Table 2.
- the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and the antisense strand respectively comprise SEQ ID NO:331/441, SEQ ID NO:332/442, SEQ ID NO:333/443, SEQ ID NO:334/444, SEQ ID NO:335/445, SEQ ID NO:336/446, SEQ ID NO:337/447, SEQ ID NO:338/448, SEQ ID NO:339/449, SEQ ID NO:340/450, SEQ ID NO:341/451, SEQ ID NO:342/452, SEQ ID NO:331/441, SEQ ID NO:332/452, SEQ ID NO:331/441, SEQ ID NO:332/442, SEQ ID NO:331/441, SEQ ID NO:332/442, SEQ ID NO:333/443, SEQ ID NO:334/444, SEQ ID NO:335/445, SEQ ID NO:336/446, SEQ ID NO:337/447, S
- the antisense strand also has a 3' overhang of one or two nucleotides.
- the first nucleotide at the 5' end of the antisense strand is a modified A or U, such as a modified U, such as Um, or Am, such as Um.
- the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and antisense strand respectively comprise SEQ ID NO:331/441, SEQ ID NO:332/442, SEQ ID NO:333/443, SEQ ID NO:334/444, SEQ ID NO:335/445, SEQ ID NO:336/446, SEQ ID NO:337/447, SEQ ID NO:338/448, SEQ ID NO:339/449, SEQ ID NO:340/450, SEQ ID NO:341/451, SEQ ID NO:342/ 452.
- the dsRNA activator comprises a sense strand and an antisense strand, wherein
- the sense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:390
- the antisense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:500.
- the sense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:431, and the antisense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:541.
- the sense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:661
- the antisense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:662.
- modified nucleotides As used herein (e.g., in Tables 1, 2, and 3), the following symbols are used to denote modified nucleotides, targeting groups, and linking groups. Unless otherwise specified in the sequence, it will be readily understood by those skilled in the art that, when present in oligonucleotides, these monomers are interconnected by 5'-3'-phosphodiester bonds (where 's' represents a phosphothioester bond connecting the two nucleotides when the first nucleotide of the two nucleotides is a phosphothioester (s)):
- Nf any 2'-fluorine modified nucleotide
- Nfs any 2'-fluorine-modified nucleoside-3'-thiophosphate ester
- Tfs 2'-Fluoro-5'-methyluridine-3'-thiophosphate
- Nm any 2'-methoxynucleotide
- Nms any 2'-methoxynucleoside-3'-thiophosphate
- Tm 2'-methoxythymidine-3'-phosphate
- Tms 2'-methoxythymidine-3'-thiophosphate
- the dsRNA activator of the present invention further includes a ligand.
- a ligand When the present invention refers to "dsRNA” or “dsRNA activator,” it also encompasses dsRNA conjugated with a ligand, also known as a dsRNA-ligand conjugate.
- a "ligand” refers to a chemical moiety conjugated to an oligonucleotide of dsRNA that can alter the distribution, targeting, or half-life of the dsRNA.
- a ligand provides enhanced affinity for selected targets (e.g., molecules, cells or cell types, compartments (e.g., cell or organ compartments, tissues, organs, or regions of the body) compared to, for example, dsRNA without the ligand.
- ligands modulate or enhance the pharmacokinetic properties of dsRNA by improving the cellular distribution, bioavailability, metabolism, excretion, permeability, and/or cellular uptake of nucleotides.
- ligands can direct oligonucleotides to specific organs, tissues, or cell types and thus enhance the effectiveness of dsRNA in such organs, tissues, or cell types.
- ligands can reduce the activity of dsRNA in non-target cell types, tissues, or organs (e.g., off-target activity or activity in non-target cell types, tissues, or organs).
- the ligands used in the RNAi activator of the present invention may be selected from sugars, cell surface receptor ligands, antibodies, drugs, hormones, lipophilic substances, polymers, proteins, peptides, toxins (e.g., bacterial toxins), vitamins, viral proteins (e.g., capsids), or combinations thereof.
- the ligands used in the RNAi activator of the present invention are sugars, including but not limited to galactose, lactose, N-acetylgalactosamine, mannose, and mannose-6-phosphate.
- Sugar ligands can be used to enhance delivery or activity in a range of tissues such as the liver and/or muscle.
- the ligand is a monosaccharide.
- the ligand for example, a monosaccharide, is N-acetylgalactosamine (GalNAc) or a derivative thereof.
- GalNAc ligands comprising one or more N-acetylgalactosamine (GalNAc) or derivatives thereof are described, for example, in US 8,106,022, the full contents of which are hereby incorporated herein by reference.
- GalNAc ligands are used as ligands to target dsRNA activators to specific cells.
- GalNAc ligands target dsRNA to hepatocytes, for example, by acting as ligands for desialylate glycoprotein receptors of hepatocytes (e.g., hepatocytes).
- exemplary GalNac ligands suitable for delivering dsRNA include, for example, Alnylam's three-touch GalNAc delivery system (see, for example, PCT/US2008/085574, US8828956B2) or "(1+1+1) trivalent GalNAc" (non-nucleosidic trivalent GalNAc) (see, for example, US986788B2, Rajeev, Kallanthottathil G et al.
- Dicerna's GalXC TM platform or GalXC-Plus TM (This involves monovalent GalNAc-coupled tetraloop structures) (see, for example, WO2016100401A1), or Arrowhead's Dynamic PolyConjugates (DPC TM , which contains PBAVE polymers of butylaminovinyl ether) or TriM TM (Targeted RNNI molecule). All cited references are incorporated herein by reference in full.
- ligands conjugated with dsRNA can also be found in, for example, those disclosed in WO2023044094A1, WO2023245060A2, or WO2018/027106, or those disclosed in WO2012083185A2, WO2015021092, WO2018044350A1, WO2024/197017A2, or WO2023/076451A1, the full contents of which are hereby incorporated herein by reference.
- the ligand used for the RNAi activator of the present invention is an asialic acid glycoprotein receptor (ASPGR) ligand.
- ASPGR asialic acid glycoprotein receptor
- the ASPGR ligand comprises a moiety selected from galactose or galactose derivatives (e.g., galactosamine, N-formylgalactosamine, N-acetylgalactosamine (GalNAc), N-propionylgalactosamine, N-butyrylgalactosamine, N-isobutyrylgalactosamine, etc.).
- the ASPGR ligand may or may not have a linker group (also referred to as a "connector").
- the galactose derivative in the ligand is N-acetylgalactosamine (GalNAc) or a GalNAc derivative
- the ligand is also referred to as a GalNAc ligand, encompassing monovalent, divalent, trivalent, or tetravalent GalNAc ligands capable of providing 1, 2, 3, or 4 structural moieties of GalNAc or GalNAc derivatives.
- the molar ratio of the dsRNA oligonucleotide to the galactose derivative can be any suitable ratio, for example, 1:1.
- the dsRNA activator of the present invention comprises GalNAc or GalNAc derivatives linked to an oligonucleotide of dsRNA. In some embodiments, the dsRNA activator of the present invention comprises one or more (e.g., two, three, four, five, or six) GalNAc or GalNAc derivatives, each of which is independently linked to multiple nucleotides of the dsRNA activator via multiple monovalent linkers.
- the ligand is an N-acetylgalactosamine (GalNAc) derivative.
- the ligand is one or more GalNAc derivatives linked via monovalent, divalent, or trivalent branched linkers.
- the dsRNA for example, its nucleotides, are conjugated to a ligand portion containing N-acetylgalactosamine via a phosphate ester group or a thiophosphate ester group.
- the ligand is conjugated to the 5' or 3' end of the sense and/or antisense strand of the dsRNA activator.
- the RNAi activator of the present invention comprises one or more GalNAc or GalNAc derivatives as ligands.
- the GalNAc or GalNAc derivative can be linked to the oligonucleotide of the RNAi via a linker group, such as a divalent, trivalent, or tetravalent branching point linker group.
- the ligand is conjugated to the 5' or 3' end of the sense and/or antisense strand of the dsRNA activator.
- the GalNAc ligand is conjugated to the 3' end of the sense strand of the RNAi.
- the GalNAc ligand is linked to the 3' end of the sense strand of the RNAi oligonucleotide via a linker group. In some embodiments, the GalNAc ligand binds to the 5' end of the sense strand. In some embodiments, the GalNAc ligand is linked to the 5' end of the sense strand of the RNAi oligonucleotide via a linker group. In some embodiments, the GalNAc ligand binds to the 3' end of the antisense strand. In some embodiments, the GalNAc ligand is linked to the 3' end of the antisense strand of the RNAi oligonucleotide via a linker group.
- GalNAc or a GalNAc derivative is linked to the oligonucleotide of the RNAi of the present invention via a divalent linker. In other embodiments, GalNAc or a GalNAc derivative is linked to the oligonucleotide of the RNAi of the present invention via a trivalent linker. In still other embodiments, GalNAc or a GalNAc derivative is linked to the oligonucleotide of the RNAi of the present invention via a tetravalent linker.
- one or more of GalNAc or GalNAc derivatives may be individually linked to the RNAi oligonucleotide via a linker group, independent of any other GalNAc or GalNAc derivative.
- any two or more of GalNAc or GalNAc derivatives may be linked to the RNAi oligonucleotide in a tandem cluster via a common linker group moiety.
- dsRNA activators comprising multiple GalNAc or GalNAc derivatives linked thereto, either independently or in a tandem cluster, are also included in this invention.
- the dsRNA oligonucleotide is conjugated to a ligand moiety comprising N-acetylgalactosamine via a phosphate ester group or a thiophosphate ester group.
- the ligand is a lipid or lipid-based molecule.
- such a lipid or lipid-based molecule binds to a serum protein, such as human serum albumin (HSA).
- HSA human serum albumin
- the HSA-binding ligand allows the conjugate to be distributed to a target tissue, such as a non-renal target tissue of the body.
- the target tissue could be the liver, containing hepatic parenchymal cells.
- Other molecules that can bind to HSA can also be used as ligands. For example, naproxen or aspirin can be used.
- Lipids or lipid-based ligands can (a) increase resistance to conjugate degradation, (b) increase targeting or transport to target cells or cell membranes, or (c) be used to modulate binding to serum proteins (e.g., HSA).
- the ligand is a lipid nanoparticle, such as a lipid nanoparticle (LNP).
- LNP delivery systems include DLin-DMA, DLin-MC3-DMA, L319, PNP (peptide nanoparticles) delivery platforms, and the EDV (EnGeneIC Dream Vector) endogenous delivery carrier nanocell platform.
- antibodies can also be used as ligands for the delivery of dsRNA, such as antibody-oligonucleotide conjugates (AOCs).
- AOCs antibody-oligonucleotide conjugates
- polymer matrix copolymerization can also be used to deliver dsRNA, such as the LODER (Local Drug EluteR) delivery platform.
- LODER Local Drug EluteR
- a ligand suitable for the dsRNA activator of the present invention is attached to the 5' and/or 3' terminal nucleotide of the sense strand and optionally the 5' and/or 3' terminal nucleotide of the antisense strand of the dsRNA oligonucleotide of the present invention, optionally via a phosphate thioester group or a phosphate ester group.
- the dsRNA activator is conjugated to the ligand via a phosphate ester group or a phosphate thioester group, for example, the phosphate thioester nucleotide bond is located at the 3' end of the sense strand or antisense strand; or the phosphate thioester nucleotide bond is located at the 5' end of the sense strand or antisense strand; or the phosphate thioester nucleotide bond is located at both the 5' and 3' ends of the sense strand, and/or the phosphate thioester nucleotide bond is located at both the 5' and 3' ends of the antisense strand.
- the ligands of the present invention can also be conjugated to the internal sequence of the oligonucleotide of dsRNA.
- the ligand can be attached to the phosphate group, the 2′-hydroxyl group, or a base of the nucleotide.
- the ligand can be attached to the 3′-hydroxyl group of the nucleotide, in which case the nucleotides are linked by a 2′-5′ phosphodiester bond.
- the ligand when the ligand is attached to the end of the dsRNA (such as siRNA) nucleotide chain, the ligand is typically attached to the phosphate group of the nucleotide; when the ligand is attached to the internal sequence of the dsRNA (such as siRNA) nucleotide, the ligand is typically attached to the sugar ring of the ribose or a base.
- the dsRNA such as siRNA
- the ligands of the present invention can be directly linked to the nucleotide double strand of the dsRNA of the present invention or linked via a linker portion (e.g., a adapter or linker group, such as a linker group contained in the ligand).
- a linker portion e.g., a adapter or linker group, such as a linker group contained in the ligand.
- the adapter is a biocleavable adapter.
- the adapter need not be biocleavable.
- the adapter may include a branching region.
- the term "branching region" means a compound portion capable of covalently coupling two or more entities together.
- adapters having branching regions can be used to conjugate multiple entities, such as N-acetylgalactosamine moieties, to the oligonucleotide of the dsRNA of the present invention.
- Adapters having branching regions that can be used for this purpose are known in the art and include, but are not limited to, amino acids (including natural and non-natural amino acids), peptides and their derivatives, glycounits and their derivatives, aromatic-substituted compounds and their derivatives, substituted hydrocarbon groups and their derivatives, triazole-containing derivatives, etc. See, for example, CN104651408A, CN113286888A, WO2015/173208, and WO2023/076451.
- ligand when referring to "ligand” or "ligand portion”, it may also refer to a ligand or ligand portion that includes a connector.
- an RNAi activator such as a dsRNA activator
- a dsRNA activator comprising one or more (e.g., one) ligands linked to the dsRNA oligonucleotide of the present invention, wherein each ligand independently has the structure of formula (I):
- Gal represents terminal galactose derivatives independently
- n is an integer selected from 1, 2, 3, and 4;
- the wavy line indicates the linking of the ligand to the oligonucleotide of the dsRNA of the present invention via this valence bond. It is understood that the ligand is linked to the 5' and/or 3' ends of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention, preferably via a phosphate ester bond or a thiophosphate ester bond.
- the connector L may or may not have branching components.
- the branching components may be in the form of two antennas, three antennas, or other multi-branched shapes.
- each Gal is individually linked to the oligonucleotide of the dsRNA of the present invention via a linker L, independently of the other Gals.
- Gals are linked to the oligonucleotide of the dsRNA of the present invention via linker L in a tandem cluster.
- the ligands of formula (I) of the present invention each independently have the structure of formula (Ia):
- LA1 represents the connection base used to connect the Gal part to the LA2 part
- LA2 represents a bivalent, trivalent, quadrivalent, or pentavalent adapter used to link n Gal- LA1 portions to the RNAi of this invention
- Gal independently represents terminal galactose derivatives
- n is an integer selected from 1, 2, 3, and 4;
- the wavy line indicates the oligonucleotide linked to the dsRNA of the present invention via this valence bond. It will be understood that the ligand is linked to the 5' and/or 3' ends of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention, and optionally the 3' end of the antisense strand, preferably via a phosphate ester bond or a thiophosphate ester bond.
- Gal independently represents GalNAc (N-acetylgalactosamine) or a GalNAc derivative.
- Gal independently represents a galactose derivative moiety having the following structure:
- R1 is an H or hydroxyl protecting group
- R2 is selected from hydrogen, hydroxyl, C1-20 alkyl, C2-20 alkenyl, C1-20 alkoxy, C1-20 alkylthio, -NRaRb, C6-20 aryl - C0-8 alkylene-O-, C6-20 aryl - C0-8 alkylene-S-, and CH3O- ( CH2CH2O ) q - CH2CH2O- , wherein Ra and Rb are each independently H or C1-20 alkyl, q represents an integer from 1 to 16, and wherein the aryl group is optionally substituted with one or more C1-8 alkyl groups; and
- a wavy valence bond indicates that the bond is connected to the rest of the molecule.
- suitable hydroxyl protecting groups are known to those skilled in the art, including but not limited to acetyl (Ac), benzoyl (Bz), phenoxyacetyl, tertvalyl, monomethoxytriphenylmethyl (MMTr), dimethoxytriphenylmethyl (DMTr), isobutyryl, tert-butyldimethylsilyl, tert-butyldiphenylsilyl (TBDPS), triisopropylsilyl and isopropyldimethylsilyl.
- R1 is independently H, acetyl (Ac), benzoyl (Bz), monomethoxytriphenylmethyl (MMTr), dimethoxytriphenylmethyl (DMTr), or tert-butyldiphenylsilyl (TBDPS).
- R1 is independently H, acetyl (Ac), benzoyl (Bz), dimethoxytriphenylmethyl (DMTr), or tert-butyldiphenylsilyl (TBDPS).
- R1 is independently H or benzoyl (Bz).
- R1 is independently H.
- R2 is independently selected from: hydrogen, hydroxyl, C1-6 alkyl, C2-6 alkenyl, C1-16 alkoxy (e.g., C1-6 alkoxy), C1-6 alkylthio, -NRaRb, phenyl- C0-4 alkylene-O-, phenyl- C0-4 alkylene-S-, and CH3O- ( CH2CH2O ) q - CH2CH2O- , wherein Ra and Rb are each independently H or C1-6 alkyl such as C1-4 alkyl, q represents an integer from 1 to 12 , and wherein the phenyl is optionally substituted with one or more C1-4 alkyl groups.
- R2 is each independently C1-16 alkoxy, such as C1-6 alkoxy .
- R2 is independently H, OH,
- R2 is independently OH, More preferably, R2 is independently OH or in particular
- Gal is represented independently. Preferred The variables are defined as described in this paper, and the wavy valence bond represents the connection to the rest of the molecule via this valence bond.
- Gal is represented independently. Preferred The variables are defined as described in this paper, and the wavy valence bond represents the connection to the rest of the molecule via this valence bond.
- Gal is represented independently.
- the wavy valence bond indicates that the valence bond is connected to the rest of the molecule.
- LA1 independently represents a linker having the following structure:
- m1, m2, m3 and m4 are each independently 1, 2, 3, 4, 5, 6, 7 or 8; and the left side of the group is connected to Gal, and the right side is connected to the rest of the molecule.
- m1 is preferably 3, 4, 5, 6, 7 or 8, more preferably 3, 4, 5 or 6, and most preferably 4.
- m2 is preferably 1, 2, 3, 4, 5 or 6, more preferably 1, 2 or 3.
- m3 is preferably 1, 2, 3, 4, 5 or 6, more preferably 1, 2 or 3, and most preferably 2.
- m4 is preferably 1, 2, 3, 4, 5 or 6, more preferably 1, 2, 3 or 4, and most preferably 1 or 3.
- LA1 independently represents a linker selected from the following:
- m1, m2 and m4 are each independently 1, 2, 3, 4, 5, 6, 7 or 8; and wherein the 1 position of the group is connected to Gal, and the 2 position is connected to the rest of the molecule.
- LA1 independently represents a linker selected from the following:
- the group is connected to Gal at position 1 and to the rest of the molecule at position 2.
- LA2 represents a divalent, trivalent, or tetravalent linker comprising a monohydroxymethylmethane, dihydroxymethylmethane, or trihydroxymethylmethane member, wherein the LA2 is linked to the LA1 portion via an ether bond through an oxygen atom in the hydroxymethyl group and is linked (directly or indirectly) to the dsRNA of the present invention via a methane carbon atom.
- LA2 indicates a connector having a structure selected from the following:
- LA3 indicates absence or represents a spacer group; the oxygen atom on the left side of the group is connected to the LA1 portion via an ether bond, and the right side is connected to the oligonucleotide of the dsRNA of this invention.
- the carbon atom marked with an asterisk can be regarded as a branch point of the LA2 portion.
- LA3 represents a spacer base having the following structure:
- q is an integer selected from 1 to 16, for example, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16; preferably, q is an integer selected from 1 to 12, for example, an integer selected from 8 to 12; the 1st position of the group is connected to the branch point in the LA2 portion, and the 2nd position is connected to the oligonucleotide of the dsRNA of the present invention, for example, through a phosphate ester bond or a thiophosphate bond.
- LA3 represents a spacer base having the following structure:
- the group is connected at position 1 to a branch point in the LA2 portion and at position 2 to an oligonucleotide of the dsRNA of the present invention, for example, via a phosphate ester bond or a thiophosphate ester bond.
- the ligands of formula (I) or (Ia) each independently have the structure of formula (Ia-i):
- each variable is defined as such, for example, as defined in formula (I) or (Ia); the wavy line indicates the oligonucleotide linked to the dsRNA via the valence bond. It is understood that the ligand is linked to the 5' and/or 3' ends of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention, preferably via a phosphate ester bond or a thiophosphate ester bond.
- R1 is independently H; m1 and m2 are independently 1, 2, 3, 4, 5, 6, 7, or 8, preferably 3 or 4; q is an integer selected from 1 to 16, preferably an integer selected from 1 to 12, more preferably an integer from 8 to 12, such as 8, 9, 10, 11, or 12.
- ligands of formula (I) or (Ia) are each independently an L96 moiety having the following structure:
- the wavy line indicates the linking of the ligand to the oligonucleotide of the dsRNA via this valence bond. It is understood that the ligand is linked to the 5' and/or 3' ends of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention, preferably via a phosphate ester bond or a thiophosphate ester bond. In some embodiments, the ligand is linked to the 3' end of the sense strand of the oligonucleotide of the dsRNA of the present invention.
- dsRNA activators of the present invention having ligands of formula (Ia-i) are shown below:
- the '3' represents the oligonucleotide double strand of the dsRNA described herein, '3' represents the 3' end of the RNAi positive strand, X represents oxygen or sulfur, and other variables are as defined herein.
- dsRNA activator of the present invention having a ligand with an L96 structure is shown below:
- the '3' represents the oligonucleotide double strand of the dsRNA described herein, '3' represents the 3' end of the positive strand of the oligonucleotide of the dsRNA, and 'X' represents oxygen or sulfur.
- the dsRNA oligonucleotide duplex is linked to an ASPGR ligand, wherein the ASPGR ligand has any structure selected from formula (I) or any subform thereof, for example, a structure selected from (I-a), (Ia-i), or L96, and the ASPGR ligand is linked to the 5' or 3' end of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention.
- the ligand is linked via a phosphate ester bond or a thiophosphate ester bond.
- the dsRNA oligonucleotide duplex is linked to an ASPGR ligand, wherein the ASPGR ligand has a structure of formula (I-a), preferably (Ia-i), more preferably L96, and the ASPGR ligand is linked to the 3' end of the sense strand of the oligonucleotide of the dsRNA of the present invention.
- the ligand is linked via a phosphate ester bond or a thiophosphate ester bond.
- the ligand is L96, see, for example, WO2009073809 and WO2009082607, which are incorporated herein by reference in their entirety.
- the dsRNA oligonucleotide double strand is linked to a GalNac ligand, such as a ligand having an L96 structure, and the ligand is linked to the 3' end of the sense strand of the oligonucleotide of the dsRNA of the present invention, wherein the ligand is linked by a phosphate ester bond or a thiophosphate ester bond (preferably a phosphate ester bond).
- the antisense strand of the dsRNA activator comprises any modified nucleotide sequence of the antisense strand in Table 2 of the specification
- the sense strand comprises any modified nucleotide sequence of the sense strand in Table 2 of the specification, wherein the sense strand is conjugated at the 3' end to a ligand of the present invention, such as an ASGPR ligand or a GalNac ligand, having, for example, the structure of formula (I-a), preferably formula (Ia-i), more preferably L96, and preferably, the ligand is linked by a phosphate ester bond or a thiophosphate bond.
- a ligand of the present invention such as an ASGPR ligand or a GalNac ligand, having, for example, the structure of formula (I-a), preferably formula (Ia-i), more preferably L96, and preferably, the ligand is linked by a phosphate ester bond or a thiophosphate bond
- the combination of antisense and sense strands in the dsRNA activator is shown in Table 2 as any combination of antisense and sense strands, wherein the sense strand is conjugated at the 3' end to a GalNac ligand of the present invention, which has, for example, an L96 structure, and preferably, the ligand is linked by a phosphate ester bond or a thiophosphate ester bond.
- the dsRNA activator is any of the dsRNA activators shown in Table 2, and wherein the positive strand is conjugated at the 3' end with a GalNac ligand of the present invention, which has, for example, an L96 structure, and preferably, the ligand is linked by a phosphate ester bond or a thiophosphate ester bond.
- the antisense strand of the dsRNA activator comprises any modified nucleotide sequence of the antisense strand in Table 3 of the specification
- the sense strand comprises any modified nucleotide sequence of the sense strand in Table 3 of the specification that is conjugated to an L96 structural ligand at the 3' end via a phosphate ester bond.
- the combination of the antisense and sense strands in the dsRNA activator is shown in Table 3 as any combination of antisense and sense strands.
- the dsRNA activator is any of the dsRNA activators shown in Table 3.
- the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and antisense strand respectively comprise SEQ ID NO:551/441, SEQ ID NO:552/442, SEQ ID NO:553/443, SEQ ID NO:554/444, SEQ ID NO:555/445, SEQ ID NO:556/446, SEQ ID NO:557/447, SEQ ID NO:558/448, SEQ ID NO:559/449, SEQ ID NO:560/450, SEQ ID NO:561/451, SEQ ID NO:562/452, SEQ ID NO: 563/453 ⁇ SEQ ID NO:564/454 ⁇ SEQ ID NO:565/455 ⁇ SEQ ID NO:566/456 ⁇ SEQ ID NO:567/457 ⁇ SEQ ID NO:568/458 ⁇ SEQ ID NO:569/459 ⁇ SEQ ID NO:570/460 ⁇ SEQ ID NO:571/461 ⁇ SEQ ID NO:572/462 ⁇ S
- the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and the antisense strand respectively comprise SEQ ID NO:551/441, SEQ ID NO:552/442, SEQ ID NO:553/443, SEQ ID NO:554/444, SEQ ID NO:555/445, SEQ ID NO:556/446, SEQ ID NO:557/447, SEQ ID NO:558/448, SEQ ID NO:559/449, SEQ ID NO:560/450, SEQ ID NO:561/451, SEQ ID NO:562/452 ...0/450, SEQ ID NO:561/451, SEQ ID NO:562/452, SEQ ID NO:560/450, SEQ ID NO:560/450, SEQ ID NO:561/451, SEQ ID NO:562/452, SEQ ID NO:560/450, SEQ ID NO:561/451, SEQ ID NO:562/452, SEQ ID NO:560/450, SEQ ID NO
- the dsRNA activator comprises a sense strand and an antisense strand, wherein
- the sense strand comprises or is composed of a modified nucleotide sequence with an L96 ligand conjugated to the 3' end as shown in SEQ ID NO:610
- the antisense strand comprises or is composed of a modified nucleotide sequence as shown in SEQ ID NO:500.
- the sense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:651, which has an L96 structure ligand attached to its 3' end
- the antisense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:541.
- the sense strand comprises or is composed of a modified nucleotide sequence with an L96 structural ligand conjugated to the 3' end as shown in SEQ ID NO:663, and the antisense strand comprises or is composed of a modified nucleotide sequence as shown in SEQ ID NO:662.
- the dsRNA activator comprises a sense strand and an antisense strand, wherein
- the sense strand consists of a modified nucleotide sequence with an L96 ligand attached to the 3' end, as shown in SEQ ID NO:610, and the antisense strand consists of a modified nucleotide sequence, as shown in SEQ ID NO:500.
- the sense strand consists of a modified nucleotide sequence with an L96 ligand attached to the 3' end, as shown in SEQ ID NO:651, and the antisense strand consists of a modified nucleotide sequence, as shown in SEQ ID NO:541.
- the sense strand consists of a modified nucleotide sequence with an L96 structural ligand attached to the 3' end, as shown in SEQ ID NO:663, and the antisense strand consists of a modified nucleotide sequence, as shown in SEQ ID NO:662.
- dsRNA can be synthesized using standard methods known in the art.
- the double-stranded RNA of the present invention can be prepared using a two-step procedure. First, a single strand of the double-stranded RNA molecule is prepared separately. Then, the component strands are annealed.
- the single strand of dsRNA such as siRNA, can be prepared using solution-phase or solid-phase organic synthesis, or both.
- Organic synthesis offers the advantage of readily preparing oligonucleotide chains comprising non-natural or modified nucleotides.
- the dsRNA of the present invention is prepared by RNA solid-phase synthesis.
- RNA solid-phase synthesis is a commonly used technique for synthesizing RNA molecules, which allows for the stepwise construction of RNA chains on a solid support. This method is characterized by high throughput, high efficiency, and automation, and is widely used in biotechnology and research fields.
- RNA solid-phase synthesis comprises the following basic methods and steps:
- a template is first required, typically a single-stranded DNA sequence containing a sequence complementary to the desired RNA sequence.
- This template DNA is immobilized on a solid support, such as controlled-pore glass (CPG) or polystyrene beads.
- RNA polymerase recognizes and binds to the promoter sequence on template DNA. In solid-phase synthesis, this process typically does not require primers because RNA polymerase can directly initiate RNA chain synthesis at the promoter region.
- RNA polymerase Once RNA polymerase binds to the promoter, it begins synthesizing an RNA chain on the template DNA. In this process, RNA polymerase moves along the DNA template, adding one nucleotide triphosphate (NTP) complementary to the template DNA bases one by one. Each time an NTP is added, the RNA chain extends by one nucleotide at its 3' end.
- NTP nucleotide triphosphate
- a key feature of solid-phase synthesis is its ability to be performed in multiple cycles. Each cycle involves adding a new NTP, removing unreacted NTPs, and eluting and rebinding with RNA polymerase. This process can be automated, significantly improving synthetic efficiency.
- the transcription process needs to terminate. This is typically achieved by adding a specific termination signal or chemical substance.
- RNA strands need to be released from the solid support, and any unreacted NTPS, protecting groups, and other impurities need to be removed. This is typically achieved through chemical or enzymatic methods, such as using specific enzymes to cleave the links on the solid support.
- the synthesized RNA needs to be purified using appropriate purification methods (such as gel electrophoresis, column chromatography, etc.).
- the purified RNA can then be verified for its length, purity, and sequence correctness using various analytical methods (such as capillary electrophoresis, mass spectrometry, etc.).
- the solid support is a blank solid support, such as a blank CPG solid support. In some embodiments, the solid support is a solid support containing ligands.
- the present invention provides compositions comprising the dsRNA active agent of the present invention or a pharmaceutically acceptable salt thereof, preferably pharmaceutical compositions or pharmaceutical formulations.
- the composition further comprises a pharmaceutical excipient.
- the composition for example a pharmaceutical composition, comprises the dsRNA active agent of the present invention, and a combination of one or more other therapeutic agents.
- compositions comprising the dsRNA active agent of the present invention or a pharmaceutically acceptable salt thereof.
- compositions may also contain suitable pharmaceutical excipients, such as pharmaceutical carriers, pharmaceutical excipients, including buffers, known in the art.
- pharmaceutical carrier includes any and all physiologically compatible solvents, dispersion media, isotonic agents, and absorption delay agents.
- Such carriers include, but are not limited to, saline, buffered saline, glucose, water, glycerol, ethanol, or combinations thereof.
- compositions of the present invention can be in a variety of forms. These forms include, for example, liquid, semi-solid, and solid dosage forms, such as liquid solutions (e.g., injectable and infusionable solutions), powders or suspensions, liposomes, and suppositories. Preferred forms depend on the intended administration method and therapeutic use.
- a drug or pharmaceutical composition comprising the dsRNA active agent of the present invention can be prepared by mixing the dsRNA active agent of the present invention having the desired purity with one or more optional pharmaceutical excipients.
- the dsRNA activator is present in an unbuffered solution, such as saline or water. In some embodiments, the dsRNA activator is present in a buffered solution, such as an acetate, citrate, prolyl, carbonate, or phosphate, or any combination thereof, such as phosphate-buffered saline (PBS).
- PBS phosphate-buffered saline
- compositions or formulations of the present invention may also comprise more than one active ingredient, said active ingredient being required for the specific indication being treated, preferably those active ingredients having complementary activities that do not adversely affect each other.
- active ingredients such as insulin, glucagon-like peptide-1 agonists, sulfonylureas, sitaglinides, biguanides, thiazolidinediones, ⁇ -glucosidase inhibitors, SGLT2 inhibitors, DPP-4 inhibitors, HMG-CoA reductase inhibitors, statins, and combination formulations of any of the above.
- the active ingredients are suitably combined in an amount effective for the intended use.
- the pharmaceutical composition or formulation of the present invention may be contained in a vial or in a syringe.
- the present invention also provides pharmaceutical combinations or pharmaceutical combination products comprising the dsRNA activator of the present invention, and one or more other therapeutic agents.
- Another object of the present invention is to provide a complete pillbox containing the drug combination of the present invention, preferably said pillbox in the form of drug dosage units. This allows dosage units to be provided according to a dosing regimen or drug administration interval.
- the complete medicine box of the present invention comprises, within the same package:
- a second container containing a pharmaceutical composition comprising other therapeutic agents A second container containing a pharmaceutical composition comprising other therapeutic agents.
- other therapeutic agents such as any therapeutic agent effective in preventing or treating INHBE-related diseases and/or conditions, encompass a wide range of therapeutic agents used to treat metabolic disorders or obesity or cardiovascular diseases, such as insulin, glucagon-like peptide-1 agonists, sulfonylureas, sitaglinides, biguanides, thiazolidinediones, alpha-glucosidase inhibitors, SGLT2 inhibitors, DPP-4 inhibitors, HMG-CoA reductase inhibitors, statins, and combination preparations of any of the above drugs.
- therapeutic agents used to treat metabolic disorders or obesity or cardiovascular diseases such as insulin, glucagon-like peptide-1 agonists, sulfonylureas, sitaglinides, biguanides, thiazolidinediones, alpha-glucosidase inhibitors, SGLT2 inhibitors, DPP-4 inhibitors, HMG-CoA reductase inhibitors, statins, and combination preparation
- One aspect of the present invention provides a method for inhibiting the expression and/or activity of the INHBE gene in cells, comprising deactivating the cells from the dsRNA activator, pharmaceutical composition, or combination of drugs of the present invention, thereby inhibiting the expression of the INHBE gene in the cells.
- the cells are in a subject.
- the subject suffers from an INHBE-related disease and/or condition.
- contacting the cells with the dsRNA activator thereby inhibiting INHBE expression by at least about 40%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, or about 94%.
- inhibition of INHBE expression reduces the level of INHBE protein in the serum of the subject by at least about 40%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, or about 94%.
- administration of the dsRNA activator to the subject results in a decrease in INHBE concentration or a reduction in the accumulation of INHBE protein in the subject. In some embodiments, administration of the dsRNA activator to the subject results in a decrease in INHBE concentration or content, or a decrease in INHBE protein accumulation or content in the subject's body. In some embodiments, administration of the dsRNA activator to the subject results in a decrease in INHBE concentration or content in the subject's body fluids. In some embodiments, administration of the dsRNA formulation to the subject results in a decrease in INHBE expression or protein content in the subject's liver or hepatocytes.
- This invention provides, in one aspect, a method for preventing or treating a disease in a subject, comprising administering to the subject an effective amount of the dsRNA active agent, pharmaceutical composition, drug combination, or kit of the invention.
- the disease is an INHBE-related disease and/or condition.
- the present invention also provides a method for reducing weight in subjects, comprising administering to the subject an effective amount of the dsRNA active agent, pharmaceutical composition, pharmaceutical combination or kit of the present invention.
- the present invention relates to the dsRNA activator, pharmaceutical composition, pharmaceutical combination or kit of the present invention for use in therapies, such as for treating INHBE-related diseases and/or conditions, and/or for weight loss.
- the present invention relates to methods for treating diseases, such as those mentioned herein, using the dsRNA active agent, pharmaceutical composition, pharmaceutical combination, or cassette of the present invention, or to uses for said treatment, or for weight loss, or to uses for preparing a medicament for said treatment or for weight loss.
- the INHBE-related diseases and/or conditions are associated with abnormal expression (e.g., overexpression or upregulation) or abnormal activity (e.g., increased activity) of INHBE.
- the disease or condition is an indication for which one benefits from reduced expression and/or activity of inhibin subunit ⁇ E (INHBE).
- a subject suffering from an INHBE-related disease and/or condition, or whose cells exhibit abnormal INHBE expression or activity has INHBE overexpression.
- the subject has (e.g., elevated levels, such as nucleic acid or protein levels or activity) INHBE (e.g., compared to a healthy subject).
- the subject's biological sample e.g., blood, serum, tissue such as liver tissue, or cells such as hepatocytes
- INHBE e.g., elevated levels, such as nucleic acid or protein levels or activity
- the subject has cells that overexpress INHBE, such as hepatocytes.
- the individual's cells e.g., hepatocytes
- overexpress INHBE for example, moderately or highly.
- abnormal INHBE expression refers to higher INHBE expression in cells (e.g., hepatocytes) compared to INHBE expression in control cells (e.g., healthy cells in the corresponding tissue of a healthy individual, such as healthy hepatocytes).
- abnormal expression of INHBE refers to higher INHBE expression in liver tissue or hepatocytes compared to control tissues or cells (e.g., corresponding tissues or corresponding healthy hepatocytes of a healthy individual).
- INHBE overexpression or upregulation refers to an increase in the protein level (e.g., protein concentration or accumulation) of INHBE compared to the corresponding tissues or cells of healthy individuals.
- the INHBE-related disease and/or condition is a metabolic disorder or obesity or cardiovascular disease, such as metabolic disorder being metabolic syndrome, or obesity being obesity.
- the dsRNA active agent or composition or drug or formulation comprising the present invention may also be administered in combination with one or more other therapies, such as other treatment modalities and/or other therapeutic agents, for the purposes described herein, such as for the prevention and/or treatment of the related diseases or conditions mentioned herein. Therefore, the present invention also relates to combination therapies of the dsRNA active agent or composition or drug or formulation comprising the present invention with one or more other therapies.
- the present invention provides the use of the dsRNA active agent of the present invention or a composition or drug or formulation thereof in the manufacture or preparation of a medicament for the purposes described herein, such as for the prevention or treatment of the related diseases or conditions mentioned herein.
- the present invention also provides the dsRNA activator of the present invention, or compositions, pharmaceuticals, formulations or combination products comprising the present invention, for use in therapies, such as for treating the related diseases or conditions mentioned herein.
- Subjects may be mammals, such as primates, preferably higher primates, such as humans (e.g., individuals who have the disease described herein or are at risk of having the disease described herein).
- the subject has the disease described herein or is at risk of having the disease described herein.
- the combination therapy of the present invention covers combined administration (e.g., two or more therapeutic agents contained in the same formulation or separate formulations) and separate administration.
- the dsRNA active agent or composition or drug or formulation of the present invention may be administered before, simultaneously with, and/or after the administration of other therapeutic agents and/or active agents.
- other therapeutic agents that may be combined or administered in combination with the dsRNA activator, drug, formulation, or composition of the present invention are selected from any therapeutic agent effective for, for example, the prevention or treatment of INHBE-related diseases and/or conditions, covering a variety of therapeutic agents for the treatment of metabolic disorders or obesity or cardiovascular diseases, such as insulin, glucagon-like peptide-1 agonists, sulfonylureas, sitaglinides, biguanides, thiazolidinediones, ⁇ -glucosidase inhibitors, SGLT2 inhibitors, DPP-4 inhibitors, HMG-CoA reductase inhibitors, statins, and combination formulations of any of the above drugs.
- any therapeutic agent effective for, for example, the prevention or treatment of INHBE-related diseases and/or conditions, covering a variety of therapeutic agents for the treatment of metabolic disorders or obesity or cardiovascular diseases, such as insulin, glucagon-like peptide-1 agonists, sulfonylureas,
- RNA solid-phase synthesis is a commonly used technique for synthesizing RNA molecules, allowing for the stepwise construction of RNA chains on a solid support. This method is characterized by high throughput, high efficiency, and automation, and is widely used in biotechnology and research fields.
- the INHBE RNAi agent duplexes shown in Table 2 were synthesized according to the following method:
- 2'-O-methylphosphoramides are used: (5'-O-dimethoxytriphenylmethyl-N6-(benzoyl)-2'-O-methyl-adenosine-3'-O-(2-cyanoethyl-N,N-diisopropylamino)phosphoramide, 5'-O-dimethoxytriphenylmethyl-N4-(acetyl)-2'-O-methyl-cytidine-3'-O-(2-cyanoethyl-N,N-diisopropylamino)phosphoramide, (5'-O-dimethoxytriphenylmethyl-N4-(acetyl)-2'-O-methyl-cytidine-3'-O-(2-cyanoethyl-N,N-diisopropylamino)phosphoramide, (5'-O-dimethoxytriphenylmethyl-N6 ...
- 2’-Deoxy-2’-fluorophosphamide has the same protecting group as 2’-O-methylphosphamide.
- RNAi agent RNAi agent-containing phosphate-buffered saline (Corning, Cellgro) containing RNAi agent. A portion of the RNAi agent was lyophilized and stored at -15°C to -25°C. The duplex concentration was determined by measuring the absorbance of the solution in 1 ⁇ phosphate-buffered saline using a UV-Vis spectrometer. The absorbance at 260 nm was then multiplied by the conversion factor and dilution factor to determine the duplex concentration. Unless otherwise specified, all conversion factors were 0.037 mg/(mL ⁇ cm). For some experiments, the conversion factor was calculated from the extinction coefficient determined experimentally.
- the naked sequence i.e., the unmodified nucleotide sequence
- the nucleotide sequence shown in *SEQ ID NO is also listed in the sequence listing.
- siRNA ID without a decimal ".1” corresponds to a siRNA ID with a decimal ".1"
- XD000010.1 corresponds to XD000010.
- the naked sequence i.e., the unmodified nucleotide sequence without L96 conjugation
- the nucleotide sequence shown in *SEQ ID NO is also listed in the sequence listing.
- Example 2 Inhibition of human INHBE in HepG2 cells by siRNA
- HepG2 cells (Nanjing Kebai Biotechnology Co., Ltd., Cat#CBP60199) were cultured in EMEM medium (ATCC, Cat#30-2003) containing 10% fetal bovine serum at 37°C and 5% CO2.
- siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150).
- the specific method is as follows: SiRNA was prepared into a 1 ⁇ M working solution using DEPC-treated water. Solution A was prepared, with each aliquot containing 1 ⁇ l of siRNA working solution and 9 ⁇ l of Opti-MEM medium (GIBCO, Cat#31985070). Solution B was prepared, with each aliquot containing 0.3 ⁇ l of Lipofectamine RNAiMAX and 9.7 ⁇ l of Opti-MEM medium. After mixing solutions A and B, the mixture was placed in a 96-well plate and incubated at room temperature for 20 min.
- ⁇ Ct Ct(target gene) – Ct(internal reference gene)
- ⁇ Ct ⁇ Ct (drug administration group) - ⁇ Ct (negative siRNA control group)
- the relative expression level of INHBE mRNA 2 - ⁇ Ct ⁇ 100% (i.e., the remaining percentage of mRNA in the table below).
- Table 4 shows the inhibition of INHBE mRNA after transfection with the siRNA molecules in Table 2 in HepG2.
- Example 3 Inhibition of human INHBE in Hep3b cells by siRNA (dual concentration points)
- siRNA activity was screened at two concentration points: 1 nM and 0.1 nM.
- Hep3B cells (CyberKang Biotechnology Co., Ltd., Cat#iCell-h091) were cultured in MEM medium (Gibco, Cat#11090-081) containing 10% fetal bovine serum at 37°C and 5% CO2 .
- siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150). The specific method is as follows: SiRNA was prepared into 0.1 ⁇ M and 0.01 ⁇ M working solutions using DEPC-treated water. Solution A was prepared, with each aliquot containing 1 ⁇ l of siRNA working solution and 9 ⁇ l of Opti-MEM medium (Gibco, Cat#31985070). Solution B was prepared, with each aliquot containing 0.3 ⁇ l of Lipofectamine RNAiMAX and 9.7 ⁇ l of Opti-MEM medium. After mixing solutions A and B, the mixture was placed in a 96-well plate and incubated at room temperature for 20 min.
- Opti-MEM medium Gibco, Cat#31985070
- ⁇ Ct Ct(target gene) – Ct(internal reference gene)
- ⁇ Ct ⁇ Ct (drug administration group) - ⁇ Ct (negative siRNA control group)
- Relative expression level of INHBE mRNA 2 - ⁇ Ct ⁇ 100%
- XD000202 is AD-1708473 in WO2023003922A1.
- Example 4 Inhibition of human INHBE by siRNA in primary human hepatocytes
- siRNA was screened at four concentration points in human primary hepatocytes (IPHASE, Cat#085A12.21).
- siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150).
- the specific method was as follows: siRNA was diluted with DEPC-treated water to prepare four concentration gradients: 1 ⁇ M starting solution, 10-fold dilution, and so on.
- Solution A was prepared, with each aliquot containing 1 ⁇ l of siRNA working solution and 9 ⁇ l of Opti-MEM medium (Gibco, Cat#31985070).
- Solution B was prepared, with each aliquot containing 0.3 ⁇ l of Lipofectamine RNAiMAX and 9.7 ⁇ l of Opti-MEM medium. Equal volumes of solutions A and B were mixed and incubated in 96-well plates at room temperature for 20 min.
- siRNA was screened at four concentration points in primary monkey hepatocytes (IPHASE, Cat#01932B1.21).
- siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150).
- the specific method was as follows: siRNA was diluted with DEPC-treated water to prepare working solutions of 1 ⁇ M starting concentration, with 10-fold serial dilutions thereafter, for a total of four concentrations.
- Solution A was prepared, with each aliquot containing 1 ⁇ l of siRNA working solution and 9 ⁇ l of Opti-MEM medium (Gibco, Cat#31985070).
- Solution B was prepared, with each aliquot containing 0.3 ⁇ l of Lipofectamine RNAiMAX and 9.7 ⁇ l of Opti-MEM medium.
- INHBE mRNA expression levels were calculated using the ⁇ Ct relative quantification method, expressed as the percentage of remaining INHBE mRNA expression relative to the negative siRNA control group.
- PSCM is used to detect off-target effects of the sense strand.
- the target sequence is completely complementary to all 19 nucleotide sequences of the sense strand of the conjugate being detected.
- (2) GSSM is used to detect off-target effects in the seed region of the antisense strand.
- the target sequence is completely complementary to the nucleotide sequence at positions 1-8 of the 5' end of the antisense strand of the conjugate being detected.
- the nucleotide sequence at positions 9-21 of the 5' end of the antisense strand of the conjugate being detected is complementary to its corresponding target sequence but mismatched.
- the mismatch rule is that any G, C, A, or U nucleotide at any position 9-21 of the 5' end of the antisense strand of the conjugate being detected mismatches with the corresponding T, A, C, or G nucleotide in the target sequence.
- the GSSM-5hits off-target plasmid was constructed, consisting of five identical GSSM sequences linked by TTCC.
- the target sequence was embedded into the Xho I/Not I site of the psiCHECK-2 plasmid.
- Hepa1-6 cells (Nanjing Kebai Biotechnology Co., Ltd., Cat#CBP60574) were cultured in DMEM medium (Gibco, Cat#11965-092) containing 10% fetal bovine serum at 37°C and 5% CO2.
- siRNA was diluted with DEPC-treated water to prepare a 2 ⁇ M starting solution, followed by 10-fold serial dilutions to obtain six working solutions.
- the plasmid was diluted to a working solution of 200 ng/ ⁇ l.
- Solution A was prepared, with each aliquot containing 2 ⁇ l of siRNA working solution, 0.05 ⁇ l of plasmid working solution, and 2.95 ⁇ l of Opti-MEM medium.
- Solution B was prepared, with each aliquot containing 0.2 ⁇ l of siRNA working solution. 2000 Reagent and 4.8 ⁇ l Opti-MEM medium.
- siRNA concentration 40 nM, serially diluted 10-fold downwards for a total of 6 concentrations, with 10 ng of plasmid per well. After 4 h, add 100 ⁇ l of 20% FBSDMEM complete medium and continue culturing for 24 h.
- the results are shown in Tables 9 and 10.
- the off-target risk of the siRNA of this disclosure is low for the sense strand, and the off-target risk of the antisense strand seed region of the siRNA of this disclosure is lower than that of XD000202.
- the siRNA of this disclosure has a low off-target risk and high potential safety.
- Example 7 Inhibition of human INHBE in Hep3B cells by fluorinated siRNA
- the activity of fluorinated siRNA was screened in Hep3B cells at three concentration points: 10 nM, 1 nM, and 0.1 nM.
- Hep3B cells (CyberKang Biotechnology Co., Ltd., Cat#iCell-h091) were cultured in MEM medium (Gibco, Cat#11090-081) containing 10% fetal bovine serum at 37°C and 5% CO2 .
- siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150). The specific method is as follows: siRNA was prepared into 1 ⁇ M, 0.1 ⁇ M, and 0.01 ⁇ M working solutions using DEPC-treated water. Solution A was prepared, with each aliquot containing 1 ⁇ l of siRNA working solution and 9 ⁇ l of Opti-MEM medium (Gibco, Cat#31985070). Solution B was prepared, with each aliquot containing 0.3 ⁇ l of Lipofectamine RNAiMAX and 9.7 ⁇ l of Opti-MEM medium. After mixing solutions A and B, the mixture was placed in a 96-well plate and incubated at room temperature for 20 min.
- Opti-MEM medium Gibco, Cat#31985070
- Example 8 Inhibition of human INHBE in primary human hepatocytes (free uptake) by siRNA
- the compound enters human primary hepatocytes via free uptake, as described below:
- Resuscitated human primary hepatocytes (IPHASE, Cat#085A12.21) were added to 96-well plates, 90 ⁇ L per well, for a total of 40,000 cells.
- the final concentration of siRNA was 500 nM, with 7 concentration gradients of 4-fold dilution.
- INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ⁇ Ct relative quantification method, expressed as the percentage of remaining INHBE mRNA expression in cells treated with the negative siRNA control group.
- Example 9 Inhibition of monkey INHBE in primary monkey hepatocytes (free uptake) by siRNA
- the compound enters primary monkey hepatocytes via free uptake, as described below:
- Resuscitated primary monkey hepatocytes (IPHASE, Cat#01932B1.21) were added to 96-well plates, 90 ⁇ L per well, for a total of 50,000 cells.
- the final concentration of siRNA was 100 nM, with four 10-fold dilutions.
- INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ⁇ Ct relative quantification method, expressed as the percentage of remaining INHBE mRNA expression in cells treated with the negative siRNA control group.
- Example 10 Inhibitory effect of siRNA on human INHBE in humanized INHBE mice
- Humanized INHBE mice (all male) were randomly divided into groups of 15 each.
- RNA was then reverse transcribed into cDNA using a reverse transcription kit (Vazyme, Cat#R433), and the expression level of human INHBE mRNA in liver tissue was detected using real-time quantitative PCR (QPCR) using a qPCR kit (Vazyme, Cat#Q712). Primer sequences are shown in Table 14. INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ⁇ Ct relative quantification method, expressed as the percentage of remaining INHBE mRNA expression relative to the PBS control group.
- results are shown in Table 15.
- the results indicate that the disclosed siRNA exhibits high levels of inhibitory activity against the INHBE gene in humanized INHBE mice.
- XD000275.1 and XD000275.36 showed better knockdown of the INHBE gene in mice.
- XD000275.36 maintained a good knockdown effect even on day 35, demonstrating good long-term efficacy.
- XD000202.1 is AD-1708473.1 in WO2023003922A1.
- Example 11 Pharmacological effects of INHBE siRNA in high-fat diet-induced obese humanized INHBE mice
- This experiment used high-fat diet-induced obese humanized INHBE mice to determine the efficacy of INHBE siRNA drugs.
- Obese humanized INHBE mice induced by a high-fat diet (purchased from Biocytogen Jiangsu Gene Biotechnology Co., Ltd.) were divided into five groups of seven mice each, based on body weight and body fat percentage.
- the control group received PBS, while the experimental groups received XD000202.1, XD000155.1, XD000275.1, and XD000275.36, respectively, at a dose of 9 mg/kg, administered subcutaneously once a week for a total of four weeks.
- Body weight was measured twice a week during the treatment period and the observation period after treatment, and body fat percentage was measured weekly. The results are shown in Figures 1 and 2.
- siRNAs of the present invention exhibit superior in vivo activity, exceeding expectations based on their activity in in vitro screening, and surpassing or being comparable to siRNAs known in the prior art.
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Abstract
Description
相关申请的交叉引用CROSS-REFERENCE TO RELATED APPLICATIONS
本申请基于申请号为CN202410515535.6、申请日为2024年4月26日的中国专利申请,以及申请号为202410899508.3、申请日为2024年7月5日的中国专利申请提出,并要求该中国专利申请的优先权,该中国专利申请的全部内容在此引入本申请作为参考。This application is based on and claims priority to Chinese patent applications CN202410515535.6, filed on April 26, 2024, and 202410899508.3, filed on July 5, 2024, the entire contents of which are incorporated herein by reference.
本发明涉及可以调节,例如抑制抑制素亚基βE(INHBE)的表达和/或活性的调节剂,例如双链RNA(dsRNA)活性剂或反义多核苷酸制剂。本发明还涉及使用此类调节剂抑制INHBE表达和/或活性的方法,以及预防或治疗受试者INHBE相关疾病(如代谢紊乱或肥胖或心血管疾病,如代谢综合征)的方法。This invention relates to modulators, such as double-stranded RNA (dsRNA) activators or antisense polynucleotide formulations, that can modulate, for example, the expression and/or activity of inhibin subunit βE (INHBE). The invention also relates to methods for inhibiting INHBE expression and/or activity using such modulators, and methods for preventing or treating INHBE-related diseases in subjects (such as metabolic disorders or obesity or cardiovascular diseases such as metabolic syndrome).
发明背景Background of the Invention
现代社会很多人经常久坐不动、而且常常消费高热量、低纤维的快餐食品,同时体力活动减少,这导致在现代社会中谢综合征、2型糖尿病、高血压、心血管疾病、中风和其他疾病等代谢紊乱疾病蔓延。事实上,近年来,患有代谢紊乱(如代谢综合征)的人越来越多,这些人患有多种疾病,患心脏病、糖尿病、中风和其他疾病的风险也越来越高。In modern society, many people are sedentary and frequently consume high-calorie, low-fiber fast food, while also reducing physical activity. This has led to the spread of metabolic disorders such as metabolic syndrome, type 2 diabetes, hypertension, cardiovascular disease, stroke, and other illnesses. In fact, in recent years, the number of people suffering from metabolic disorders (such as metabolic syndrome) has been increasing, and these individuals have multiple diseases and a rising risk of heart disease, diabetes, stroke, and other ailments.
目前治疗脂质代谢紊乱的方法包括改变生活方式、节食、运动以及使用降脂药物(如他汀类药物)和其他药物进行治疗。然而,这些疗法和治疗方法往往受到患者依从性的限制,并不总是有效,甚至会产生副作用,并导致药物之间的相互作用。因此,本领域需要针对代谢紊乱患者的替代疗法。Current treatments for lipid metabolism disorders include lifestyle modifications, diet, exercise, and the use of lipid-lowering drugs (such as statins) and other medications. However, these therapies and treatments are often limited by patient adherence, are not always effective, can even cause side effects, and lead to drug interactions. Therefore, there is a need in the field for alternative therapies for patients with metabolic disorders.
抑制素亚基βE(INHBE)是转化生长因子-β(TGF-β)家族的成员。INHBE主要在肝脏中表达,是一种肝脏因子,已被证明与人类的胰岛素抵抗和体重指数呈正相关。定量实时PCR分析也显示,胰岛素抵抗人体肝脏样本中的INHBE基因表达增加。此外,在一种公认的代谢紊乱动物模型(即2型糖尿病,db/db小鼠模型)的肝脏中,也显示出INHBE基因表达的增加。在db/db小鼠中抑制INHBE的表达可抑制体重增加,体重减少的原因是脂肪而不是瘦肉减少。Inhibin subunit βE (INHBE) is a member of the transforming growth factor-β (TGF-β) family. INHBE is primarily expressed in the liver and is a liver factor that has been shown to be positively correlated with insulin resistance and body mass index in humans. Quantitative real-time PCR analysis has also shown increased INHBE gene expression in liver samples from insulin-resistant humans. Furthermore, increased INHBE gene expression has also been shown in the liver of a well-established animal model of metabolic disorder (i.e., type 2 diabetes, db/db mouse model). Inhibition of INHBE expression in db/db mice suppressed weight gain; the weight loss was due to a reduction in fat rather than lean muscle.
因此,INHBE可以作为治疗代谢紊乱的一个有效靶标。现阶段仍然需要具有更好活性的能有有效调节INHBE表达和/或活性的抑制剂,用于治疗代谢紊乱等。Therefore, INHBE can serve as an effective target for treating metabolic disorders. Currently, there is still a need for inhibitors with better activity that can effectively regulate INHBE expression and/or activity for the treatment of metabolic disorders.
图1显示了INHBE siRNA对高脂饮食诱导的肥胖人源化INHBE小鼠体重的影响。Figure 1 shows the effect of INHBE siRNA on the body weight of humanized INHBE mice induced by a high-fat diet.
图2显示了INHBE siRNA对高脂饮食诱导的肥胖人源化INHBE小鼠体脂的影响。Figure 2 shows the effect of INHBE siRNA on body fat in humanized INHBE mice induced by a high-fat diet.
本发明提供了能够有效降低INHBE的表达和/或活性的特异性RNAi抑制剂。本发明的RNAi活性剂可以影响RNA诱导的沉默复合体(RISC)介导的INHBE基因的mRNA的切割,从而用于抑制INHBE在细胞中的表达。本发明通过设计针对INHBE的dsRNA,可以特异性地抑制INHBE基因的表达(例如在肝脏细胞和/或脂肪细胞中),有助于预防或治疗受试者INHBE相关疾病(如代谢紊乱或肥胖或心血管疾病,如代谢综合征)。在一些实施方案中,本发明的针对INHBE的dsRNA能够更有效敲除INHBE(例如在肝脏细胞和/或脂肪细胞中),从而特异性地抑制INHBE的基因表达。This invention provides specific RNAi inhibitors capable of effectively reducing the expression and/or activity of INHBE. The RNAi activator of this invention can affect RNA-induced silencing complex (RISC)-mediated cleavage of the INHBE gene mRNA, thereby inhibiting INHBE expression in cells. By designing dsRNAs targeting INHBE, this invention can specifically inhibit the expression of the INHBE gene (e.g., in hepatocytes and/or adipocytes), which may help prevent or treat INHBE-related diseases in subjects (such as metabolic disorders or obesity, or cardiovascular diseases such as metabolic syndrome). In some embodiments, the dsRNAs targeting INHBE of this invention can more effectively knock out INHBE (e.g., in hepatocytes and/or adipocytes), thereby specifically inhibiting INHBE gene expression.
本发明提供了一种双链核糖核酸(dsRNA)活性剂,其用于抑制INHBE靶基因在细胞,如脂肪细胞和/或肝脏细胞中的表达;其中所述dsRNA活性剂包括形成双链区的正义链和反义链,其中所述正义链包括与表1中的正义核苷酸序列中的任一个正义核苷酸序列相差不超过0个、1个、2个或3个核苷酸的至少15个,例如,15个、16个、17个、18个、19个连续核苷酸,并且所述反义链包括与表1中的任一个反义核苷酸序列相差不超过0个、1个、2个或3个核苷酸的至少15个,例如,15个、16个、17个、18个、19个、20个、21个连续核苷酸。在一些实施方案中,这些dsRNA活性剂进一步包括例如,与所述dsRNA的至少一条链缀合的一种或多种配体,所述配体能够将所述dsRNA靶向递送到肝脏组织或肝细胞,例如通过接头,例如二价或三价支链接头与所述dsRNA活性剂的至少一条链缀合的一种或多种配体,例如靶向ASPGR的配体,例如包含GalNAc或其衍生物的GalNAc配体。This invention provides a double-stranded ribonucleic acid (dsRNA) activator for inhibiting the expression of INHBE target genes in cells, such as adipocytes and/or liver cells; wherein the dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the sense strand comprises at least 15 consecutive nucleotides, for example, 15, 16, 17, 18, or 19, that differ from any sense nucleotide sequence in Table 1 by no more than 0, 1, 2, or 3 nucleotides, and the antisense strand comprises at least 15 consecutive nucleotides, for example, 15, 16, 17, 18, 19, 20, or 21, that differ from any antisense nucleotide sequence in Table 1 by no more than 0, 1, 2, or 3 nucleotides, and the antisense strand comprises at least 15 consecutive nucleotides, for example, 15, 16, 17, 18, 19, 20, or 21, that differ from any antisense nucleotide sequence in Table 1 by no more than 0, 1, 2, or 3 nucleotides. In some embodiments, these dsRNA activators further include, for example, one or more ligands conjugated to at least one strand of the dsRNA, the ligands being capable of targeted delivery of the dsRNA to liver tissue or hepatocytes, for example, via a linker, such as a bivalent or trivalent branched linker conjugated to at least one strand of the dsRNA activator, such as a ligand targeting ASPGR, such as a GalNAc ligand comprising GalNAc or a derivative thereof.
本发明还提供一种细胞,其包含本文所述的dsRNA活性剂。The present invention also provides a cell comprising the dsRNA activator described herein.
本发明提供了一种药物组合物,所述药物组合物含有本文所述的dsRNA活性剂,和任选的药学上可接受的载体。The present invention provides a pharmaceutical composition comprising the dsRNA activator described herein and optionally a pharmaceutically acceptable carrier.
本发明提供了一种药物组合,所述的药物组合含有本文所述的dsRNA活性剂以及一种或多种其他治疗剂,所述其他治疗剂是例如预防或治疗INHBE相关的疾病和/或病症有效的任何治疗剂,涵盖用于治疗代谢紊乱或肥胖或心血管疾病的各种治疗剂。This invention provides a pharmaceutical combination comprising the dsRNA activator described herein and one or more other therapeutic agents, which are any therapeutic agents effective, for example, in preventing or treating INHBE-related diseases and/or conditions, covering a wide range of therapeutic agents for treating metabolic disorders or obesity or cardiovascular diseases.
本发明提供了本文所述的dsRNA活性剂和/或药物组合物和/或药物组合在制备用于治疗由INHBE基因表达引起的疾病和/或病症的药物中的用途。This invention provides the use of the dsRNA activators and/or pharmaceutical compositions and/or drug combinations described herein in the preparation of medicaments for treating diseases and/or conditions caused by INHBE gene expression.
本发明提供了本文所述的dsRNA活性剂在制备抑制细胞中INHBE基因表达的药物中的用途,优选抑制肝脏组织或肝细胞中INHBE表达。This invention provides the use of the dsRNA activator described herein in the preparation of a drug that inhibits INHBE gene expression in cells, preferably inhibiting INHBE expression in liver tissue or hepatocytes.
本发明提供了一种预防或治疗由INHBE基因表达引起的疾病和/或病症的方法,所述方法包括将有效量的本文所述的dsRNA活性剂和/或药物组合物和/或药物组合给予有此需要的受试者。The present invention provides a method for preventing or treating diseases and/or conditions caused by INHBE gene expression, the method comprising administering an effective amount of the dsRNA activator and/or pharmaceutical composition and/or combination of drugs described herein to a subject in need.
另一方面,本发明提供了一种抑制INHBE基因表达的方法,该方法包括将有效量的本文所述的dsRNA活性剂和/或药物组合物和/或药物组合与细胞接触,优选肝细胞,并任选地将该步骤中产生的细胞维持一段足以使INHBE基因的mRNA转录物降解的时间,从而抑制细胞例如肝细胞中INHBE基因的表达。On the other hand, the present invention provides a method for inhibiting INHBE gene expression, the method comprising contacting cells, preferably hepatocytes, with an effective amount of the dsRNA activator and/or pharmaceutical composition and/or drug combination described herein, and optionally maintaining the cells produced in this step for a period of time sufficient to degrade the mRNA transcript of the INHBE gene, thereby inhibiting the expression of the INHBE gene in cells such as hepatocytes.
发明详述Invention Details
在下文详细描述本发明前,应理解本发明不限于本文中描述的特定方法学、方案和试剂,因为这些可以变化。还应理解本文中使用的术语仅为了描述具体实施方案,而并不意图限制本发明的范围,其仅会由所附权利要求书限制。Before describing the invention in detail below, it should be understood that the invention is not limited to the specific methodologies, schemes, and reagents described herein, as these can vary. It should also be understood that the terminology used herein is for the purpose of describing particular embodiments only and is not intended to limit the scope of the invention, which is limited only by the appended claims.
I.定义I. Definition
除非另外定义,本文中使用的所有技术和科学术语与本发明所属领域中普通技术人员通常的理解具有相同的含义。Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention pertains.
为了解释本说明书,将使用以下定义,并且只要适当,以单数形式使用的术语也可以包括复数,并且反之亦然。要理解,本文所用的术语仅是为了描述具体的实施方案,并且不意欲是限制性的。To explain this specification, the following definitions will be used, and terms used in the singular may also include plural forms, where appropriate. It should be understood that the terminology used herein is for the purpose of describing particular embodiments only and is not intended to be restrictive.
术语“约”或“大约”在与数字数值联合使用时意为涵盖具有比指定数字数值小1%、2%、3%、4%或5%的下限和比指定数字数值大1%、2%、3%、4%或5%的上限的范围内的数字数值。应当理解,术语“约”或“大约”所涉及的该具体值本身也是具体且优选地公开的。When used in conjunction with a numerical value, the term "about" or "approximately" means to encompass a range of numerical values having a lower limit of 1%, 2%, 3%, 4%, or 5% smaller than the specified numerical value and an upper limit of 1%, 2%, 3%, 4%, or 5% larger than the specified numerical value. It should be understood that the specific value referred to by the term "about" or "approximately" is itself specific and preferably disclosed.
如本文所用,术语“和/或”意指可选项中的任一项或可选项的两项或多项。As used herein, the term “and/or” means any one of the options or two or more of the options.
如本文所用,术语“包含”或“包括”意指包括所述的要素、整数或步骤,但是不排除任意其他要素、整数或步骤。在本文中,当使用术语“包含”或“包括”时,除非另有指明,否则也涵盖由所述及的要素、整数或步骤组成的情形。例如,当提及“包含”某个具体序列的正义链时,也旨在涵盖由该具体序列组成的正义链。As used herein, the terms “comprising” or “including” mean to include the stated elements, integers, or steps, but do not exclude any other elements, integers, or steps. In this document, when the terms “comprising” or “including” are used, unless otherwise specified, they also cover situations consisting of the stated elements, integers, or steps. For example, when referring to a justice chain that “comprising” a specific sequence, it is also intended to cover a justice chain consisting of that specific sequence.
本文所用的“调节剂”是一种能减少或增加INHBE表达和/或活性的分子,优选地,所述调节剂是能减少或抑制INHBE表达和/或活性的分子,例如RNAi活性剂,例如dsRNA活性剂。As used herein, "regulator" is a molecule that can reduce or increase INHBE expression and/or activity. Preferably, the regulator is a molecule that can reduce or inhibit INHBE expression and/or activity, such as an RNAi activator or a dsRNA activator.
本文所用的“抑制素亚基βE”可与“INHBE”互换使用,是指一种属于转化生长因子-β(TGF-β)家族的生长因子。INHBE mRNA主要在肝脏中表达((Fang J.et al.Biochemical&Biophysical Res.Comm.1997;231(3):655-61),并且INHBE残余调节干细胞生长和分化。INHBE也被称为抑制素βE链、激活素βE、抑制素βE亚基、抑制素βE和MGC4638。人INHBE mRNA转录本的序列可在例如GenBank Accession No.Gl:1877089956(NM_031479.5;SEQ ID NO:664;reverse互补序列SEQ ID NO:665)。小鼠INHBE mRNA的序列可以在例如GenBank Accession No.Gl:1061899809(NM_008382.3)中找到。大鼠INHBE mRNA的序列可在例如GenBank Accession No.GI:148747589(NM_031815.2;)。其他INHBE mRNA序列的例子可通过公开的数据库,如GenBank、UniProt、OMIM。有关INHBE的更多信息,请访问www.ncbi.nlm.nih.gov/gene/?term=INHBE。上述GenBank编号和基因数据库编号的全部内容均作为参考资料纳入本文。本文所用术语INHBE也指INHBE基因的变体,包括SNP数据库中提供的变体。INHBE基因中的许多变异已被确定,并可在NCBI dbSNP和UniProt等数据库中找到(参见www.ncbi.nlm.nih.gov/snp/?term=INHBE,其全部内容已通过引用并入本文。
The term "inhibin subunit βE" used in this article can be used interchangeably with "INHBE" and refers to a growth factor belonging to the transforming growth factor-β (TGF-β) family. INHBE mRNA is mainly expressed in the liver (Fang J. et al. Biochemical & Biophysical Res. Comm. 1997; 231(3):655-61), and INHBE remnants regulate stem cell growth and differentiation. INHBE is also known as inhibin βE chain, activin βE, inhibin βE subunit, inhibin βE and MGC4638. The sequence of human INHBE mRNA transcript can be found, for example, in GenBank Accession No. GL:1877089956 (NM_031479.5; SEQ ID NO:664; reverse complementary sequence SEQ ID NO:665). The sequence of mouse INHBE mRNA can be found, for example, in GenBank Accession No. GL:1061899809 (NM_008382.3). The sequence of rat INHBE mRNA can be found, for example, in GenBank Accession No. GL:1061899809 (NM_008382.3). No. GI: 148747589 (NM_031815.2). Examples of other INHBE mRNA sequences are available in publicly available databases such as GenBank, UniProt, and OMIM. For more information on INHBE, please visit www.ncbi.nlm.nih.gov/gene/?term=INHBE. The full contents of the above GenBank and gene database numbers are incorporated herein by reference. The term INHBE as used herein also refers to variants of the INHBE gene, including those available in the SNP database. Many variants in the INHBE gene have been identified and can be found in databases such as NCBI dbSNP and UniProt (see www.ncbi.nlm.nih.gov/snp/?term=INHBE, the full contents of which are incorporated herein by reference).
如本文所使用的,“靶序列”是指在INHBE基因转录期间形成的mRNA分子的核苷酸序列的连续部分,包含作为初级转录产物的RNA加工产物的mRNA。在一个实施方案中,序列的靶部分将至少足够长,以在INHBE基因转录期间形成的mRNA分子的核苷酸序列的该部分处或附近用作dsRNA定向切割的底物。例如,靶序列的长度可以为例如15-36个核苷酸(“nt”),或其间的任何子长度。作为非限制性的例子,靶序列的长度可以为15-30nt,15-26nt、15-23nt、15-22nt、15-21nt、15-20nt、15-19nt、15-18nt、15-17nt、18-30nt、18-26nt、18-23nt、18-22nt、18-21nt、18-20nt、18nt、19-30nt、19-26nt、19-23nt、19-22nt、19-21nt、19-20nt、19nt、20-30nt、20-26nt、20-25nt、20-24nt、20-23nt、20-22nt、20-21nt、20nt、21-30nt、21-26nt、21-25nt、21-24nt、21-23nt或21-22nt、21nt、22nt或23nt。在根据本发明的一些实施方案中,靶序列的长度优选为至少18个、19个、20个或21个核苷酸。在根据本发明的一些实施方案中,靶序列的长度为约19个至约23个核苷酸。在根据本发明的一些实施方案中,靶序列的长度为约20个或21核苷酸。As used herein, a “target sequence” refers to a continuous portion of the nucleotide sequence of an mRNA molecule formed during INHBE gene transcription, containing the mRNA as a primary transcription product of RNA processing. In one embodiment, the target portion of the sequence will be at least long enough to serve as a substrate for dsRNA-directed cleavage at or near that portion of the nucleotide sequence of the mRNA molecule formed during INHBE gene transcription. For example, the length of the target sequence can be, for example, 15-36 nucleotides (“nt”), or any sub-length therein. As a non-limiting example, the length of the target sequence can be 15-30 nt, 15-26 nt, 15-23 nt, 15-22 nt, 15-21 nt, 15-20 nt, 15-19 nt, 15-18 nt, 15-17 nt, 18-30 nt, 18-26 nt, 18-23 nt, 18-22 nt, 18-21 nt, 18-20 nt, 18 nt, 19-30 nt, 19-26 nt, The target sequence is 19-23 nucleotides, 19-22 nucleotides, 19-21 nucleotides, 19-20 nucleotides, 19 nucleotides, 20-30 nucleotides, 20-26 nucleotides, 20-25 nucleotides, 20-24 nucleotides, 20-23 nucleotides, 20-22 nucleotides, 20-21 nucleotides, 20 nucleotides, 21-30 nucleotides, 21-26 nucleotides, 21-25 nucleotides, 21-24 nucleotides, 21-23 nucleotides, or 21-22 nucleotides, 21 nucleotides, 22 nucleotides, or 23 nucleotides. In some embodiments of the invention, the target sequence is preferably at least 18, 19, 20, or 21 nucleotides long. In some embodiments of the invention, the target sequence is about 19 to about 23 nucleotides long. In some embodiments of the invention, the target sequence is about 20 or 21 nucleotides long.
“G”、“C”、“A”、“T”和“U”通常分别代表含有鸟嘌呤、胞嘧啶、腺嘌呤、胸腺嘧啶和尿嘧啶作为碱基的核苷酸,如无特别说明,其涵盖天然核苷酸和修饰的核苷酸。然而,可以理解的是,术语“核糖核苷酸”或“核苷酸”也可以指经修饰的核苷酸,或具有替换部分的替代物(surrogate replacement moiety)。本领域技术人员清楚地知道,鸟嘌呤、胞嘧啶、腺嘌呤和尿嘧啶可以被其它部分取代,而不会实质性改变包括含有此类替代部分的核苷酸的寡核苷酸的碱基配对特性。例如但不限于,包括肌苷(由次黄嘌呤与核糖结合而成的核苷类化合物)作为其碱基的核苷酸可以与含有腺嘌呤、胞嘧啶或尿嘧啶的核苷酸碱基配对。因此,在本发明特征的dsRNA的核苷酸序列中,含有尿嘧啶、鸟嘌呤或腺嘌呤的核苷酸可以被含有例如肌苷的核苷酸取代。在另一个实例中,寡核苷酸中任何位置的腺嘌呤和胞嘧啶都可以分别被鸟嘌呤和尿嘧啶取代,以与靶mRNA形成G-U摆动碱基配对。含有此类取代部分的序列适用于本发明特征的组合物和方法。“G,” “C,” “A,” “T,” and “U” generally represent nucleotides containing guanine, cytosine, adenine, thymine, and uracil as bases, respectively, and unless otherwise specified, encompass both native and modified nucleotides. However, it is understood that the term “ribonucleotide” or “nucleotide” can also refer to a modified nucleotide or a surrogate replacement moiety. Those skilled in the art will readily recognize that guanine, cytosine, adenine, and uracil can be substituted with other moieties without substantially altering the base-pairing properties of oligonucleotides including those containing such substitution moieties. For example, but not limited to, nucleotides containing inosine (a nucleoside compound formed by the combination of hypoxanthine and ribose) as a base can pair with nucleotides containing adenine, cytosine, or uracil. Therefore, in the nucleotide sequence of the dsRNA characteristic of this invention, nucleotides containing uracil, guanine, or adenine can be substituted with nucleotides containing, for example, inosine. In another example, adenine and cytosine at any position in the oligonucleotide can be replaced by guanine and uracil, respectively, to form a G-U swinging base pairing with the target mRNA. Sequences containing such substitution moieties are suitable for the compositions and methods characteristic of the present invention.
当本文提及“核苷酸序列”时,其是指一段连续的核苷酸,其中所述的核苷酸可以是天然核苷酸,也可以是经修饰的核苷酸。When this article refers to a "nucleotide sequence", it means a continuous nucleotide sequence, which can be a natural nucleotide or a modified nucleotide.
如本文可互换使用的术语“dsRNA”、“dsRNA活性剂”、“双链RNA”和“双链RNA分子”可互换使用,是指核糖核酸分子的复合物,具有双链体结构,所述双链体结构包括两条反平行且基本上互补的核酸链,相对于靶RNA(即,INHBE基因)具有“有义”和“反义”取向。在本发明的一些实施方案中,双链RNA(dsRNA)通过本文中称为RNA干扰或RNAi的转录后基因沉默机制触发靶RNA(例如,mRNA)的降解。在一些实施方案中,本发明的dsRNA是小干扰RNA(siRNA)。在一些实施方案中,本文提及dsRNA活性剂时,其还可以包含与双链体结构连接的配体,所述配体有助于将所述dsRNA递送到靶组织或靶细胞。As used interchangeably herein, the terms “dsRNA,” “dsRNA activator,” “double-stranded RNA,” and “double-stranded RNA molecule” refer to a complex of ribonucleic acid molecules having a double-stranded structure comprising two antiparallel and substantially complementary nucleic acid strands having “sense” and “antisense” orientations relative to the target RNA (i.e., the INHBE gene). In some embodiments of the invention, the double-stranded RNA (dsRNA) triggers the degradation of the target RNA (e.g., mRNA) through a post-transcriptional gene silencing mechanism referred to herein as RNA interference or RNAi. In some embodiments, the dsRNA of the invention is a small interfering RNA (siRNA). In some embodiments, when referred to herein as a dsRNA activator, it may also comprise a ligand linked to the double-stranded structure, the ligand facilitating the delivery of the dsRNA to a target tissue or target cell.
本文术语“siRNA”是一类双链RNA分子,其可以介导与其互补的靶RNA(例如mRNA,编码蛋白质的基因的转录物)的沉默。siRNA通常是双链的,包括与靶RNA互补的反义链,和与该反义链互补的正义链。为方便起见,这样的mRNA在此也被称为有待被沉默的mRNA。这样的基因也称为靶基因。通常,有待被沉默的RNA是内源基因或病原体基因。The term "siRNA" in this article refers to a class of double-stranded RNA molecules that can mediate the silencing of their complementary target RNA (e.g., mRNA, the transcript of a gene encoding a protein). siRNA is typically double-stranded, consisting of an antisense strand complementary to the target RNA and a sense strand complementary to that antisense strand. For convenience, such mRNA is also referred to herein as the mRNA to be silenced. Such genes are also called target genes. Typically, the RNA to be silenced is an endogenous gene or a pathogen gene.
术语“反义链”或“引导链”是指dsRNA中的一条寡合苷酸链,其包含与靶序列(例如,INHBE mRNA)基本互补的区域。The term "antisense strand" or "guide strand" refers to an oligonucleotide chain in dsRNA that contains a region substantially complementary to the target sequence (e.g., INHBE mRNA).
如本文所使用的,术语“正义链”或“随从链”或“有义链”是指包含与如本文所定义的反义链基本互补的区域的寡合苷酸链,可与反义链互补形成dsRNA,其可以与反义链互补形成dsRNA的双链体区。As used herein, the terms “sense chain” or “follower chain” or “sense chain” refer to an oligonucleotide chain containing a region substantially complementary to the antisense chain as defined herein, which can complement the antisense chain to form dsRNA, and which can complement the antisense chain to form the double-stranded region of dsRNA.
在本文中,如无另行指明,术语“互补”或“互补性”表示,包含第一核苷酸序列的寡核苷酸或多核苷酸在某些条件下与包含第二核苷酸序列的寡核苷酸或多核苷酸杂交并形成双链体结构的能力。本领域技术人员能够根据杂交的寡核苷酸或多核苷酸的最终应用目的来确定最适用于两条序列的互补性和用于测定该互补性的条件。因此,在本文中,在用于描述RNAi的正义链序列和反义链序列之间的碱基配对情况,或RNAi的反义链序列和靶序列之间的碱基配对情况时,术语“互补”或“互补性”应理解为,不仅涵盖100%互补(即完全互补)的情况,也涵盖低于100%互补(即基本上互补)的情况,即,在互补形成的双链核苷酸区域中存在不实质性影响所述RNAi实现其预期功能的碱基错配。如本领域技术人员知晓,在双链核酸分子中,当一条链上的碱基与另一条链上对应位置的碱基以互补的方式形成Watson-Crick碱基对时,两条链在该位置上的碱基被认为是彼此“互补配对”的或“匹配的”。例如,嘌呤碱基腺嘌呤(A)与嘧啶碱基胸腺嘧啶(T)或尿嘧啶(U))彼此互补配对;嘌呤碱基鸟嘌呤(C)与嘧啶碱基胞嘧啶(G)彼此互补配对。与此相应地,“错配”是指在双链核酸中一条链与另一条链的对应位置上的碱基并未以互补的形式配对存在。然而,应当理解,在RNA核苷的碱基部分中具有修饰的核苷,如果允许保持Watson Crick碱基配对,则应认为该修饰的核苷也是互补配对的。因此,本文中,核苷碱基“互补”涵盖未修饰的核碱基和修饰的核碱基之间的Watson Crick碱基配对(参见例如Hirao等人(2012)Accounts of Chemical Research第45卷第2055页和Bergstrom(2009)Current Protocols in Nucleic Acid Chemistry Suppl.37 1.4.1)。In this document, unless otherwise specified, the terms "complementarity" or "complementarity" refer to the ability of an oligonucleotide or polynucleotide containing a first nucleotide sequence to hybridize with an oligonucleotide or polynucleotide containing a second nucleotide sequence under certain conditions and form a double-stranded structure. Those skilled in the art can determine the optimal complementarity of the two sequences and the conditions used to determine this complementarity based on the intended application of the hybridized oligonucleotide or polynucleotide. Therefore, in this document, when describing the base pairing between the sense and antisense strands of RNAi, or between the antisense strand and the target sequence of RNAi, the terms "complementarity" or "complementarity" should be understood to cover not only 100% complementarity (i.e., perfect complementarity) but also less than 100% complementarity (i.e., substantially complementarity), that is, the presence of base mismatches in the complementary double-stranded nucleotide region that do not substantially affect the RNAi's intended function. As those skilled in the art will appreciate, in double-stranded nucleic acid molecules, when a base on one strand forms a Watson-Crick base pair with a corresponding base on the other strand in a complementary manner, the bases at that position on both strands are considered to be "complementarily paired" or "matched." For example, the purine base adenine (A) is complementary to the pyrimidine base thymine (T) or uracil (U); the purine base guanine (C) is complementary to the pyrimidine base cytosine (G). Correspondingly, a "mismatch" refers to a situation in double-stranded nucleic acids where corresponding bases on one strand are not complementary to each other. However, it should be understood that nucleotides modified in the base portion of RNA nucleosides should also be considered complementary if Watson-Crick base pairing is permitted. Therefore, in this paper, nucleoside base “complementarity” encompasses Watson-Crick base pairing between unmodified and modified nucleobases (see, for example, Hirao et al. (2012) Accounts of Chemical Research, Vol. 45, p. 2055 and Bergstrom (2009) Current Protocols in Nucleic Acid Chemistry, Suppl. 37, 1.4.1).
在本文中,为了本发明的目的,与双链RNAi活性剂(例如本文所述的siRNA)相关的表述“互补”或“互补性”优选地不低于70%,即,在互补杂交形成的双链体区中存在不少于70%的碱基位置是互补配对的,即,在形成双链体区的连续核苷酸序列中出现错配的位置数少于30%。例如,对于21个碱基对的双链体区,不少于70%互补意味着,该双链体在杂交时形成不超过6、5、4、3、2、1或0个错配的碱基对。优选地,计算双链体区中连续核苷酸序列的互补性时不允许插入和缺失的存在。相应地,在本文中,与RNAi活性剂相关的表述,与靶序列“互补的(反义链)序列”、或与反义链的部分序列“互补的(正义链)序列”,可为“完全互补”或“基本上互补”。“完全互补”意味着两条序列具有100%的互补性。而当第一序列在本文中被称为与第二序列“基本上互补”时,两条序列在杂交形成的双链体中可包含一个或多个但通常不超过30%、20%或10%的错配碱基对,并且仍保持在与其最终应用(例如,经由RISC途径抑制基因表达)最相关的条件下杂交的能力。在本文中使用时,“完全互补”是指两条链之间完全互补。应当理解,当提及互补区或双链区完全互补时,是指比对时匹配的两条相同长度的核苷酸链之间完全互补。因此应当理解,当RNAi的两条寡核苷酸被设计来在杂交期间形成一个或多个单链突出端时,在确定互补性时此类突出端将被不认为是错配。例如,就本文所述的目的而言,包含长度为19个核苷酸的一条正义寡核苷酸链和长度为21个核苷酸的另一条反义寡核苷酸链的RNAi,如果较长的反义寡核苷酸包含了与较短的正义寡核苷酸完全互补的19个核苷酸的序列时,两条寡核苷酸链仍可被认为是“完全互补”的。In this document, for the purposes of this invention, the expression "complementary" or "complementarity" associated with double-stranded RNAi activators (such as siRNA as described herein) is preferably not less than 70%, meaning that at least 70% of the base positions in the double-stranded region formed by complementary hybridization are complementary, i.e., the number of mismatched positions in the continuous nucleotide sequence forming the double-stranded region is less than 30%. For example, for a 21-base-pair double-stranded region, not less than 70% complementarity means that the double-stranded region forms no more than 6, 5, 4, 3, 2, 1, or 0 mismatched base pairs during hybridization. Preferably, the presence of insertions and deletions is not allowed when calculating the complementarity of the continuous nucleotide sequence in the double-stranded region. Accordingly, in this document, the expression associated with RNAi activators, "complementary (antisense) sequence" to the target sequence, or "complementary (sense) sequence" to a portion of the antisense sequence, can be "completely complementary" or "substantially complementary." "Completely complementary" means that the two sequences have 100% complementarity. When the first sequence is referred to herein as “substantially complementary” to the second sequence, the two sequences may contain one or more, but typically no more than 30%, 20%, or 10%, mismatched base pairs in the hybridized duplex and still retain the ability to hybridize under conditions most relevant to their final application (e.g., repressing gene expression via a RISC pathway). As used herein, “perfect complementarity” means perfect complementarity between the two strands. It should be understood that when referring to perfect complementarity of complementary regions or duplexes, it means perfect complementarity between two identical nucleotide chains that match at alignment. Therefore, it should be understood that when the two oligonucleotides of an RNAi are designed to form one or more single-stranded overhangs during hybridization, such overhangs will not be considered mismatches when determining complementarity. For example, for the purposes described herein, an RNAi containing a 19-nucleotide-long sense oligonucleotide chain and a 21-nucleotide-long antisense oligonucleotide chain could still be considered “perfectly complementary” if the longer antisense oligonucleotide contains a 19-nucleotide sequence that is perfectly complementary to the shorter sense oligonucleotide.
如本文所使用的,术语“互补区”是指反义链上与本文所定义的序列(例如靶序列,例如INHBE mRNA靶序列)互补(基本上互补或完全互补)的区域。在互补区与靶序列不完全互补(基本上互补)的情况下,错配可以处于分子的内部或末端区中。通常,最可容忍的错配在末端区,例如在dsRNA的5'或3'端的5个、4个、3个、2个或1个核苷酸内,例如在反义链的5’端的第一个核苷酸可以耐受错配。在一些实施方案中,本发明的双链RNA活性剂包含反义链中的核苷酸错配。在一些实施方案中,本发明的双链RNA活性剂的反义链包含与靶mRNA的不超过4个错配,例如,反义链包含与靶mRNA的4个、3个、2个、1个或0个错配。在一些实施方案中,本发明的双链RNA活性剂的反义链在5’末端的核苷酸与靶mRNA错配,例如本发明的双链RNA活性剂的反义链在5’末端为U,而不考虑所述靶mRNA的3’末端是否为与U配对的A。在一些实施方案中,本发明的双链RNA活性剂的反义链与正义链的不超过4个错配,例如,反义链包含与正义链的4个、3个、2个、1个或0个错配。在一些实施方案中,核苷酸错配在例如距离反义链的3'端或相应的距离正义链的5’端的5个、4个、3个核苷酸内。在一些实施方案中,核苷酸错配在例如距离正义链的3'端或相应的距离反义链的5’端的5个、4个、3个核苷酸内。在另一个实施方案中,核苷酸错配在例如在正义链或反义链的3'末端核苷酸。As used herein, the term "complementary region" refers to a region on the antisense strand that is complementary (substantially complementary or perfectly complementary) to a sequence defined herein (e.g., a target sequence, such as the INHBE mRNA target sequence). In cases where the complementary region is not perfectly complementary (substantially complementary) to the target sequence, mismatches can be located within the molecule or in terminal regions. Typically, the most tolerable mismatches are in terminal regions, such as within 5, 4, 3, 2, or 1 nucleotides at the 5' or 3' end of the dsRNA; for example, the first nucleotide at the 5' end of the antisense strand can tolerate a mismatch. In some embodiments, the double-stranded RNA activator of the present invention comprises nucleotide mismatches in the antisense strand. In some embodiments, the antisense strand of the double-stranded RNA activator of the present invention comprises no more than 4 mismatches with the target mRNA; for example, the antisense strand comprises 4, 3, 2, 1, or 0 mismatches with the target mRNA. In some embodiments, the 5' end nucleotide of the antisense strand of the double-stranded RNA activator of the present invention is mismatched with the target mRNA, for example, the 5' end of the antisense strand of the double-stranded RNA activator of the present invention is U, regardless of whether the 3' end of the target mRNA is A, which pairs with U. In some embodiments, the antisense strand of the double-stranded RNA activator of the present invention has no more than four mismatches with the sense strand; for example, the antisense strand contains four, three, two, one, or zero mismatches with the sense strand. In some embodiments, the nucleotide mismatch is, for example, within five, four, or three nucleotides from the 3' end of the antisense strand or the corresponding 5' end of the sense strand. In some embodiments, the nucleotide mismatch is, for example, within five, four, or three nucleotides from the 3' end of the sense strand or the corresponding 5' end of the antisense strand. In another embodiment, the nucleotide mismatch is, for example, at the 3' end nucleotide of the sense or antisense strand.
如本文使用的,术语“核苷酸突出端”是指至少一个未配对的核苷酸,其从dsRNA的双链体结构或双链体区突出。例如当dsRNA的一条链的3'-末端延伸超过另一条链的5'-末端时或反之亦然,存在核苷酸突出端。dsRNA可以包含具有至少一个核苷酸的突出端;可选地,该突出端可以包含至少两个核苷酸、至少三个核苷酸、至少四个核苷酸、至少五个核苷酸或更多。核苷酸突出端可以包含核苷酸/核苷类似物(包括脱氧核苷酸/核苷)或由其组成。一个或多个突出端可以处于正义链、反义链或其任何组合上。另外,突出端的一个或多个核苷酸可以存在于siRNA的反义链或正义链的5'-末端、3'-末端或两个末端上。在一些实施方案中,突出端存在于反义链的3’端,例如是1、2、3、4或5个核苷酸,例如2个核苷酸。As used herein, the term "nucleotide overhang" refers to at least one unpaired nucleotide that protrudes from the double-stranded structure or double-stranded region of dsRNA. A nucleotide overhang exists, for example, when the 3' end of one strand of dsRNA extends beyond the 5' end of the other strand, or vice versa. dsRNA may contain an overhang having at least one nucleotide; alternatively, the overhang may contain at least two, three, four, five, or more nucleotides. The nucleotide overhang may contain or consist of nucleotide/nucleoside analogs (including deoxynucleotides/nucleosides). One or more overhangs may be located on the sense strand, antisense strand, or any combination thereof. Additionally, one or more nucleotides of the overhang may be present at the 5' end, 3' end, or both ends of the antisense strand or sense strand of siRNA. In some embodiments, the overhang is located at the 3' end of the antisense strand, and is, for example, 1, 2, 3, 4, or 5 nucleotides, such as 2 nucleotides.
“平端”或“平末端”意指在该dsRNA的该端处不存在不成对的核苷酸,即无核苷酸突出端。“平端”dsRNA是在其整个长度上为双链的dsRNA,即,在分子的任一端处没有核苷酸突出端。本发明的dsRNA涵盖在5’端和3’端均为平端的dsRNA。"Flat-ended" or "flat-ended" means that there are no unpaired nucleotides at that end of the dsRNA, i.e., no nucleotide overhang. A "flat-ended" dsRNA is a double-stranded dsRNA along its entire length, meaning that there are no nucleotide overhangs at either end of the molecule. The dsRNA of this invention encompasses dsRNAs with flat ends at both the 5' and 3' ends.
如本文使用的,术语“双链区”或“双链体”或“双链体区”可以互换使用,是指dsRNA中正义链和反义链杂交形成的双链结构。As used herein, the terms “double-stranded region” or “double-stranded body” or “double-stranded body region” are used interchangeably to refer to the double-stranded structure formed by the hybridization of the sense and antisense strands in dsRNA.
一般而言,dsRNA分子的每条链的大多数核苷酸是核糖核苷酸,但如本文详细描述的,每条链或两条链也可以包含一种或多种经修饰的核糖核苷酸,例如脱氧核糖核苷酸或具有化学修饰的核苷酸。如本文中所使用的,“dsRNA”可以包含具有化学修饰的核糖核苷酸;dsRNA可以包含在多个核苷酸处的实质性修饰。如本文所使用的,术语“经修饰的核苷酸”是指独立地具有经修饰的糖部分、经修饰的核苷酸间键或经修饰的核碱基或其任何组合的核苷酸。因此,术语经修饰的核苷酸涵盖对核苷间键、糖部分或核碱基的取代、添加或去除,例如官能团或原子。适用于本发明的活性剂的修饰包含本文所公开的或本领域已知的所有类型的修饰。Generally, most nucleotides in each strand of a dsRNA molecule are ribonucleotides, but as described in detail herein, each or both strands may also contain one or more modified ribonucleotides, such as deoxyribonucleotides or chemically modified nucleotides. As used herein, “dsRNA” may contain chemically modified ribonucleotides; dsRNA may contain substantial modifications at multiple nucleotide sites. As used herein, the term “modified nucleotide” refers to a nucleotide that independently has a modified sugar moiety, a modified internucleotide bond, or a modified nucleobase, or any combination thereof. Thus, the term modified nucleotide encompasses substitution, addition, or removal of, for example, functional groups or atoms, of internucleotide bonds, sugar moieties, or nucleobases. Modifications of the active agents suitable for use in this invention include all types of modifications disclosed herein or known in the art.
对于天然存在的寡核苷酸,核苷间键包括在毗邻核苷之间产生磷酸二酯键的磷酸酯基团。在本文中,术语“修饰的核苷间键”定义为,除了磷酸二酯(PO)键之外的将二个核苷共价连接在一起的键。根据本发明的RNAi的核苷酸链可以包含一个或多个从天然磷酸二酯修饰而来的核苷间键。根据本发明可以考虑的修饰核苷间键包括,但不限于:硫代磷酸酯键、二硫代磷酸酯键、甲基磷酸酯键、硒代磷酸酯键、磷酰胺酯键等。在一些实施方案中,用于本发明RNAi的寡核苷酸中的修饰的核苷间键是硫代磷酸酯键。For naturally occurring oligonucleotides, internucleotide bonds include phosphate groups that form phosphodiester bonds between adjacent nucleosides. Hereinafter, the term "modified internucleotide bond" is defined as a bond that covalently links two nucleosides together, other than a phosphodiester (PO) bond. The nucleotide chain of the RNAi according to the invention may contain one or more internucleotide bonds modified from natural phosphodiester bonds. Modified internucleotide bonds contemplated according to the invention include, but are not limited to: thiophosphate bonds, dithiophosphate bonds, methylphosphate bonds, selenophosphate bonds, phosphoramidite bonds, etc. In some embodiments, the modified internucleotide bond in the oligonucleotide used for the RNAi of the invention is a thiophosphate bond.
如本文所使用的,“配体部分”是指与dsRNA的双链体缀合的化学部分,其能够改变dsRNA的分布、靶向或半衰期。在本文中提及“dsRNA”或“dsRNA活性剂时”,除非上下文存在明确相反的描述,否则其也涵盖包含配体部分的dsRNA。在本文中提及“siRNA”或“siRNA活性剂时”,除非上下文存在明确相反的描述,否则其也涵盖包含配体部分的siRNA。在本发明的一些实施方案中,配体部分是“GalNAc配体”。在本文中,“GalNAc配体”是指包含N-乙酰半乳糖胺(GalNAc)或其衍生物结构部分的脱唾液酸糖蛋白受体(ASGPR)配体。该术语涵盖提供1个、2个、3个、4个、或更多个GalNAc或GalNAc衍生物结构部分的单价、二价、三价、四价以及多价GalNAc配体。As used herein, "ligand moiety" refers to a chemical portion conjugated to the double strand of dsRNA that can alter the distribution, targeting, or half-life of dsRNA. When "dsRNA" or "dsRNA activator" is mentioned herein, it also encompasses dsRNA containing a ligand moiety unless the context explicitly contradicts this description. Similarly, when "siRNA" or "siRNA activator" is mentioned herein, it also encompasses siRNA containing a ligand moiety unless the context explicitly contradicts this description. In some embodiments of the invention, the ligand moiety is a "GalNAc ligand." Herein, "GalNAc ligand" refers to an asialic acid glycoprotein receptor (ASGPR) ligand containing a structural moiety of N-acetylgalactosamine (GalNAc) or a derivative thereof. This term encompasses monovalent, divalent, trivalent, tetravalent, and multivalent GalNAc ligands providing one, two, three, four, or more structural moieties of GalNAc or GalNAc derivatives.
在本文中提及dsRNA的正义链和/或反义链所包含的核苷酸序列时,除非上下文存在明确相反的描述,否则也涵盖缀合有配体部分的核苷酸序列。When referring to the nucleotide sequences contained in the sense and/or antisense strands of dsRNA in this article, the nucleotide sequences conjugated with ligands are also included unless the context clearly indicates otherwise.
如在此使用的,术语“抑制”与“减少”、“沉默”、“下调”、以及其他类似术语可互换使用,并且包括任何水平的抑制。As used herein, the term “inhibition” is used interchangeably with “reduction,” “silence,” “downregulation,” and other similar terms, and includes any level of inhibition.
表述“抑制INHBE”旨在指抑制任何INHBE的活性或表达。表述“抑制INHBE的表达”旨在指抑制任何INHBE基因以及INHBE基因的变体或突变体的表达。因此,该INHBE基因可以是野生型INHBE基因、突变INHBE基因、或在遗传操作的细胞、细胞群组或生物体的情形下的转基因INHBE基因。The expression "inhibit INHBE" refers to the inhibition of the activity or expression of any INHBE gene. The expression "inhibit INHBE expression" refers to the inhibition of the expression of any INHBE gene, as well as variants or mutants of the INHBE gene. Therefore, the INHBE gene can be a wild-type INHBE gene, a mutant INHBE gene, or a transgenic INHBE gene in the case of genetically manipulated cells, cell groups, or organisms.
“抑制INHBE基因表达”包括INHBE基因的任何水平的抑制,例如INHBE基因表达的至少部分阻抑。基于与INHBE基因表达相关的任何变量的水平或水平变化,例如INHBE mRNA水平或INHBE蛋白水平,可以评估INHBE基因表达。此水平可以在个体细胞中或在一组细胞中(包括例如来源于个体的样品)进行评估。可以通过与对照水平相比的一个或多个与INHBE表达相关的变量的绝对或相对水平的降低来评估抑制。对照水平可以是本领域中利用的任何类型的对照水平,例如给药前基线水平或从类似的未经处理或经对照(例如,仅缓冲液对照或惰性剂对照)处理的个体、细胞、或样品确定的水平。"Inhibition of INHBE gene expression" includes inhibition of any level of the INHBE gene, such as at least partial repression of INHBE gene expression. INHBE gene expression can be assessed based on the level or change in the level of any variable associated with INHBE gene expression, such as INHBE mRNA level or INHBE protein level. This level can be assessed in individual cells or in a group of cells (including, for example, samples derived from an individual). Inhibition can be assessed by a decrease in the absolute or relative level of one or more variables associated with INHBE expression compared to a control level. The control level can be any type of control level utilized in the art, such as baseline levels before administration or levels determined from similar untreated or controlled (e.g., buffer-only control or inert agent control) individuals, cells, or samples.
本文所用术语“抑制素亚基beta E相关疾病或病症”或"INHBE相关疾病或病症"是指由INHBE异常表达和/或活性引起或与之相关的疾病或病症。术语“INHBE相关疾病或病症”包括可从INHBE基因表达、复制或蛋白活性下降中获益的疾病、紊乱或病症。在一些实施方案中,INHBE相关疾病或病症是代谢紊乱或肥胖或心血管疾病,例如肥胖症或代谢综合征。As used herein, the terms "inhibin subunit beta E-related disease or condition" or "INHBE-related disease or condition" refer to a disease or condition caused by or associated with abnormal expression and/or activity of INHBE. The term "INHBE-related disease or condition" includes diseases, disorders, or conditions from which one may benefit from decreased INHBE gene expression, replication, or protein activity. In some embodiments, an INHBE-related disease or condition is a metabolic disorder or obesity or cardiovascular disease, such as obesity or metabolic syndrome.
如本文所述的,“代谢紊乱”是指破坏正常代谢的任何疾病或病症,所述代谢是指在细胞水平上将食物转化为能量的过程。代谢疾病影响细胞进行关键生物化学反应的能力,这些反应涉及蛋白质(氨基酸)、碳水化合物(糖和淀粉)或脂类(脂肪酸)的加工或运输。As described in this article, “metabolic disorder” refers to any disease or condition that disrupts normal metabolism, which is the process of converting food into energy at the cellular level. Metabolic disorders affect a cell’s ability to carry out key biochemical reactions involving the processing or transport of proteins (amino acids), carbohydrates (sugars and starches), or lipids (fatty acids).
术语“有效量”指本发明的dsRNA活性剂或组合物或组合的这样的量或剂量,其以单一或多次剂量施用患者后,在需要治疗或预防的患者中产生预期效果。根据预期效果,可以包括“治疗有效量”和“预防有效量”。The term "effective amount" refers to such an amount or dose of the dsRNA active agent or composition or combination of the present invention, which, when administered to a patient in a single or multiple doses, produces the intended effect in a patient requiring treatment or prevention. Depending on the intended effect, it may include "therapeutic effective amount" and "preventive effective amount".
“治疗有效量”指以需要的剂量并持续需要的时间段,有效实现所需治疗结果的量。治疗有效量也是这样的一个量,其中dsRNA活性剂或组合物或组合的任何有毒或有害作用不及治疗有益作用。相对于未治疗的对象,“治疗有效量”优选地抑制可度量参数至少约30%、甚至更优选地至少约40%、45%、50%、55%、60%、65%、70%、75%、80%、85%、90%甚至100%。"Therapeutic effective amount" refers to the amount that, at the required dose and for the required duration, effectively achieves the desired therapeutic outcome. Therapeutic effective amount is also a amount in which any toxic or harmful effects of the dsRNA active agent or composition or combination are less than the beneficial therapeutic effect. Relative to untreated subjects, "therapeutic effective amount" preferably inhibits a measurable parameter by at least about 30%, and more preferably at least about 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, or even 100%.
“预防有效量”指以需要的剂量并持续需要的时间段,有效实现所需预防结果的量。通常,由于预防性剂量在对象中在疾病较早阶段之前或在疾病较早阶段使用,故预防有效量将小于治疗有效量。"Prophylactic effective dose" refers to the amount of medication administered at the required dose for the required duration to effectively achieve the desired preventive outcome. Typically, because prophylactic doses are administered to individuals before or at an early stage of the disease, the prophylactic effective dose will be less than the therapeutic effective dose.
术语“宿主细胞”、“宿主细胞系”和“宿主细胞培养物”可交换地使用且是指其中引入外源核酸的细胞,包括这种细胞的后代。The terms “host cell,” “host cell line,” and “host cell culture” are used interchangeably and refer to cells in which foreign nucleic acids have been introduced, including the progeny of such cells.
“个体”或“受试者”在本文中可以互换使用,包括哺乳动物。哺乳动物包括但不限于,家养动物(例如,牛,羊,猫,狗和马),灵长类动物(例如,人和非人灵长类动物如猴),兔,以及啮齿类动物(例如,小鼠和大鼠)。在一些实施方案中,个体或受试者是人。The terms “individual” or “subject” may be used interchangeably herein and include mammals. Mammals include, but are not limited to, domesticated animals (e.g., cattle, sheep, cats, dogs, and horses), primates (e.g., human and non-human primates such as monkeys), rabbits, and rodents (e.g., mice and rats). In some embodiments, the individual or subject is a human.
术语“药用辅料”指与活性物质一起施用的稀释剂、佐剂(例如弗氏佐剂(完全和不完全的))、赋形剂、载体或稳定剂等。The term "pharmaceutical excipients" refers to diluents, adjuvants (e.g., Freund's adjuvants (complete and incomplete)), excipients, carriers, or stabilizers that are applied together with the active substance.
术语“药物组合物”指这样的组合物,其以允许包含在其中的活性成分的生物学活性有效的形式存在,并且不包含对施用所述组合物的受试者具有不可接受的毒性的另外的成分。在一些实施方案中,当提及“药物组合物”时,其还涵盖配制为制剂或制品形式的药物制剂。The term "pharmaceutical composition" refers to a composition that is present in a form that allows for the biological activity of the active ingredient contained therein, and that does not contain any additional ingredients that would have unacceptable toxicity to a subject administering the composition. In some embodiments, when referring to "pharmaceutical composition," it also encompasses pharmaceutical preparations formulated as formulations or articles.
术语“药物组合”是指非固定组合产品或固定组合产品,包括但不限于药盒、药物组合物。术语“非固定组合”意指活性成分(例如,(i)本发明的dsRNA活性剂、以及(ii)其他治疗剂)以分开的实体被同时、无特定时间限制或以相同或不同的时间间隔、依次地施用于患者,其中这类施用在患者体内提供预防或治疗有效水平的两种或更多种活性剂。在一些实施方案中,药物组合中使用的本发明的本发明的dsRNA活性剂和其他治疗剂以不超过它们单独使用时的水平施用。术语“固定组合”意指两种或更多种活性剂以单个实体的形式被同时施用于患者。优选对两种或更多种活性剂的剂量和/或时间间隔进行选择,从而使各部分的联合使用能够在治疗疾病或病症时产生大于单独使用任何一种成分所能达到的效果。各成分可以各自呈单独的制剂形式,其制剂形式可以相同也可以不同。The term "drug combination" refers to non-fixed combination products or fixed combination products, including but not limited to pillboxes and pharmaceutical compositions. The term "non-fixed combination" means that active ingredients (e.g., (i) the dsRNA active agent of the present invention, and (ii) other therapeutic agents) are administered to a patient simultaneously, without a specific time limit, or sequentially at the same or different time intervals, in separate entities, wherein such administration to the patient provides a preventive or therapeutically effective level. In some embodiments, the dsRNA active agent of the present invention and other therapeutic agents used in the drug combination are administered at levels not exceeding those obtained when used alone. The term "fixed combination" means that two or more active agents are administered to a patient simultaneously in the form of a single entity. Preferably, the dosage and/or time interval of the two or more active agents are selected so that the combined use of the components produces an effect greater than that achieved by using any one component alone in treating a disease or condition. The components may each be in a separate formulation, and their formulations may be the same or different.
术语“组合疗法”是指施用两种或更多种治疗剂或治疗方式以治疗本文所述疾病。这种施用包括以基本上同时的方式共同施用这些治疗剂,例如以具有固定比例的活性成分的单一胶囊。或者,这种施用包括对于各个活性成分在多种或在分开的容器(例如片剂、胶囊、粉末和液体)中的共同施用。粉末和/或液体可以在施用前重构或稀释至所需剂量。此外,这种施用还包括以大致相同的时间或在不同的时间以顺序的方式使用每种类型的治疗剂。在任一情况下,治疗方案将提供药物组合在治疗本文所述的病症或病状中的有益作用。The term "combination therapy" refers to the administration of two or more therapeutic agents or modes of treatment to treat the disease described herein. Such administration includes the co-administration of these therapeutic agents in a substantially simultaneous manner, such as in a single capsule containing active ingredients in a fixed proportion. Alternatively, such administration includes the co-administration of individual active ingredients in multiple or separate containers (e.g., tablets, capsules, powders, and liquids). Powders and/or liquids may be reconstituted or diluted to the desired dose prior to administration. Furthermore, such administration includes the sequential administration of each type of therapeutic agent at substantially the same time or at different times. In either case, the treatment regimen will provide the beneficial effect of the combination of drugs in treating the condition or symptom described herein.
术语“其它治疗剂”涵盖除本发明的dsRNA活性剂或包含其的药物组合物之外的预防或治疗INHBE相关的疾病和/或病症(例如由INHBE基因异常表达引起的疾病和/或病症)有效的任何治疗剂,涵盖用于治疗代谢紊乱或肥胖或心血管疾病,如肥胖症或代谢综合征的各种治疗剂。The term "other therapeutic agents" encompasses any therapeutic agent, other than the dsRNA active agent of the present invention or pharmaceutical compositions comprising it, that is effective in preventing or treating INHBE-related diseases and/or conditions (e.g., diseases and/or conditions caused by abnormal expression of the INHBE gene), and includes various therapeutic agents for treating metabolic disorders or obesity or cardiovascular diseases, such as obesity or metabolic syndrome.
用于本文时,“治疗”指减缓、中断、阻滞、缓解、停止、降低、或逆转已存在的症状、病症、病况或疾病的进展或严重性。When used in this article, "treatment" means to slow down, interrupt, block, alleviate, stop, reduce, or reverse the progression or severity of existing symptoms, conditions, illnesses, or diseases.
用于本文时,“预防”包括对疾病或病症或特定疾病或病症的症状的发生或发展的抑制。When used in this article, "prevention" includes the suppression of the occurrence or development of a disease or condition or the symptoms of a particular disease or condition.
术语“载体”当在本文中使用时是指能够增殖与其相连的另一个核酸的核酸分子。该术语包括作为自我复制核酸结构的载体以及结合到已经引入其的宿主细胞的基因组中的载体。一些载体能够指导与其可操作相连的核酸的表达。这样的载体在本文中被称为“表达载体”。The term "vector," as used herein, refers to a nucleic acid molecule capable of replicating another nucleic acid linked to it. This term includes vectors that function as self-replicating nucleic acid structures as well as vectors that bind to the genome of a host cell that has already been introduced therein. Some vectors are capable of directing the expression of nucleic acids operatively linked to them. Such vectors are referred to herein as "expression vectors."
“受试者/患者/个体样品”指从患者或受试者得到的细胞或流体的集合。组织或细胞样品的来源可以是实体组织,像来自新鲜的、冷冻的和/或保存的器官或组织样品或活检样品或穿刺样品;血液或任何血液组分;体液,诸如脑脊液、羊膜液(羊水)、腹膜液(腹水)、或间隙液;来自受试者的妊娠或发育任何时间的细胞。组织样品可能包含在自然界中天然不与组织混杂的化合物,诸如防腐剂、抗凝剂、缓冲剂、固定剂、营养物、抗生素、等等。"Subject/Patient/Individual Sample" refers to a collection of cells or fluids obtained from a patient or subject. The source of the tissue or cell sample can be solid tissue, such as fresh, frozen, and/or preserved organ or tissue samples, biopsy samples, or puncture samples; blood or any blood component; body fluids, such as cerebrospinal fluid, amniotic fluid, peritoneal fluid, or interstitial fluid; or cells from any stage of pregnancy or development in the subject. Tissue samples may contain compounds that are naturally occurring and do not mix with tissues, such as preservatives, anticoagulants, buffers, fixatives, nutrients, antibiotics, etc.
II.dsRNA活性剂II. dsRNA activator
本发明提供了抑制INHBE的RNAi活性剂,例如dsRNA活性剂。在一些实施方案中,所述dsRNA活性剂是siRNA。在某些实施方案中,siRNA包含双链核糖核酸(dsRNA)分子,用于抑制细胞(如受试者(例如,哺乳动物,如易患INHBE相关疾病或病症的人)体内的细胞,例如肝细胞)中INHBE基因的表达。This invention provides RNAi activators for inhibiting INHBE, such as dsRNA activators. In some embodiments, the dsRNA activator is siRNA. In some embodiments, the siRNA comprises a double-stranded ribonucleic acid (dsRNA) molecule for inhibiting the expression of the INHBE gene in cells such as hepatocytes in a subject (e.g., mammals, such as individuals susceptible to INHBE-related diseases or conditions).
生物体内源性的RNAi(RNA interference)机制通常涉及一系列过程,包括:Dicer将长的dsRNA加工成短的19-21个碱基对(bp)的siRNA;siRNA与Ago蛋白结合形成RNA诱导的沉默复合体(RISC),Ago蛋白剪切siRNA中的正义链,并将其释放出来;之后反义链结合的成熟的RISC通过序列互补机制切割与反义链反向互补的mRNA。根据该RNA干扰机制,已经开发了多种不同结构的人工RNAi分子,这些结构可以在不同的阶段步入RNAi途径,实现对靶基因转录物的序列特异性切割作用。参见例如,Molecules 2019,24,2211;doi:10.3390/molecules24122211(特此完整地并入本文作为参考)。具有此类结构的人工RNAi分子包括,例如,具有双链体区域(以及任选地一个或两个突出端)的siRNA分子,可以作为Dicer酶底物的长链siRNA分子、可以通过Dicer加工产生siRNA结构的短发夹RNA(shRNA)、以及仅包含反义链的长单链siRNA分子。可以理解,这些分子形式均落入本发明的RNAi活性剂的范围。Intrinsic RNAi (RNA interference) mechanisms in organisms typically involve a series of processes, including: Dicer processing long dsRNA into short 19-21 base pairs (bp) siRNA; siRNA binding to Ago protein to form an RNA-induced silencing complex (RISC); Ago protein cleaving the sense strand of the siRNA and releasing it; subsequently, the mature RISC bound to the antisense strand cleaves the mRNA that is anticomplementary to the antisense strand through a sequence complementation mechanism. Based on this RNA interference mechanism, various artificial RNAi molecules with different structures have been developed. These structures can enter the RNAi pathway at different stages to achieve sequence-specific cleavage of target gene transcripts. See, for example, Molecules 2019, 24, 2211; doi:10.3390/molecules24122211 (which is hereby incorporated herein by reference in its entirety). Artificial RNAi molecules with such structures include, for example, siRNA molecules having a double-stranded region (and optionally one or two overhangs), long-chain siRNA molecules that can serve as substrates for the Dicer enzyme, short hairpin RNA (shRNA) that can be processed by Dicer to produce siRNA structures, and long single-stranded siRNA molecules containing only the antisense strand. It is understood that these molecular forms all fall within the scope of the RNAi activators of this invention.
在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)抑制INHBE基因(例如,人INHBE基因)的表达(例如在细胞中,例如在肝细胞中,例如在人原代肝细胞中)至少约40%、约50%、约55%、约60%、约65%、约70%、约75%、约80%、约85%、约90%、约91%、约92%、约93%或约94%,如通过例如PCR的方法或通过基于蛋白质的方法(如通过免疫荧光分析,使用例如蛋白质印迹或流式细胞术技术)所测定的。在某些实施方案中,通过本文中提供的qPCR方法,在合适的生物细胞系中,用例如大约10nM、大约1nM、大约0.1nM或大约0.01nM浓度的dsRNA例如siRNA确定表达的抑制。在某些实施方案中,通过本文中提供的qPCR方法,在合适的生物细胞系中,用例如梯度稀释的浓度(例如起始100nM的浓度)的dsRNA例如siRNA确定表达的抑制。In some embodiments, the dsRNA activators of this disclosure, such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), inhibit the expression of the INHBE gene (e.g., the human INHBE gene) by at least about 40%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, or about 94% in cells, such as in hepatocytes, such as in human primary hepatocytes, as determined by, for example, PCR or by protein-based methods (e.g., by immunofluorescence analysis, using, for example, Western blotting or flow cytometry). In some embodiments, inhibition of expression is determined in suitable biological cell lines using dsRNA, such as siRNA, at concentrations of, for example, about 10 nM, about 1 nM, about 0.1 nM, or about 0.01 nM, by the qPCR method provided herein. In some implementations, inhibition of expression is determined in suitable biological cell lines using the qPCR method provided herein, with, for example, serially diluted concentrations (e.g., starting at 100 nM) of dsRNA, such as siRNA.
在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)脱靶风险低,例如正义链和反义链均具有较低的脱靶风险。在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)的脱靶风险低于对照siRNA,例如相比已知对照siRNA,如WO2023003922A1中的AD-1708473。In some embodiments, the dsRNA active agents of this disclosure, such as siRNAs (including siRNAs containing modified nucleotides and siRNAs containing modified nucleotides and ligands), have a low off-target risk, for example, both the sense and antisense strands have a low off-target risk. In some embodiments, the dsRNA active agents of this disclosure, such as siRNAs (including siRNAs containing modified nucleotides and siRNAs containing modified nucleotides and ligands), have a lower off-target risk than control siRNAs, for example, compared to known control siRNAs, such as AD-1708473 in WO2023003922A1.
在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)能够被肝细胞自由摄取,且在肝细胞例如人原代肝细胞中抑制INHBE基因的表达,例如如通过本文提供的qPCR方法,在合适的生物细胞系中,用例如梯度稀释的浓度(例如起始500nM的浓度)的dsRNA例如siRNA确定表达的抑制。In some embodiments, the dsRNA activators of this disclosure, such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), can be freely taken up by hepatocytes and inhibit the expression of the INHBE gene in hepatocytes, such as human primary hepatocytes, for example, by determining the inhibition of expression in a suitable biological cell line using, for example, serially diluted concentrations (e.g., starting concentration of 500 nM) of dsRNA, such as siRNA, as provided herein by the qPCR method.
在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)能够在体内有效抑制INHBE基因的表达,例如在肝脏组织或肝细胞中。在一些实施方案中,本发明的dsRNA活性剂,例如siRNA活性剂(特别是具有特定修饰的siRNA活性剂)在体内具有更好的对INHBE的抑制效果,例如其在体内对INHBE mRNA的抑制水平高于其在体外筛选中对INHBE mRNA的预期抑制效果。In some embodiments, the dsRNA activators of this disclosure, such as siRNAs (including siRNAs with modified nucleotides and siRNAs with modified nucleotides and ligands), are capable of effectively inhibiting the expression of the INHBE gene in vivo, for example, in liver tissue or hepatocytes. In some embodiments, the dsRNA activators of the present invention, such as siRNA activators (particularly siRNA activators with specific modifications), have better inhibitory effects on INHBE in vivo, for example, their inhibitory level on INHBE mRNA in vivo is higher than their expected inhibitory effect on INHBE mRNA in in vitro screening.
在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)在体内抑制INHBE基因(例如,人INHBE基因)的表达(例如在肝脏组织中,例如在小鼠肝脏组织中)至少约40%、约50%、约55%、约60%、约65%、约70%、约75%、约80%、约85%或约90%,例如通过对小鼠单次皮下给药或对小鼠肝组织匀浆进行检测获得的,例如如实施例10所述的方法。In some embodiments, the dsRNA activator of this disclosure, such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), inhibits the expression of the INHBE gene (e.g., the human INHBE gene) in vivo (e.g., in liver tissue, such as in mouse liver tissue) by at least about 40%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, or about 90%, for example by a single subcutaneous administration to mice or by detection of mouse liver tissue homogenate, as described in Example 10.
在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)对靶基因INHBE的抑制效果具有长效性,例如在体外与细胞接触或在体内给药后1周、2周、3周或5周后仍然具有对靶基因INHBE的抑制。在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)在体内对靶基因INHBE的抑制(敲低)具有长效性,例如给药或1周、2周、3周或5周后仍然具有对靶基因INHBE的抑制。In some embodiments, the dsRNA active agents of this disclosure, such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), exhibit long-lasting inhibitory effects on the target gene INHBE, for example, maintaining inhibition of the target gene INHBE 1 week, 2 weeks, 3 weeks, or 5 weeks after in vitro contact with cells or in vivo administration. In some embodiments, the dsRNA active agents of this disclosure, such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), exhibit long-lasting inhibition (knockdown) of the target gene INHBE in vivo, for example, maintaining inhibition of the target gene INHBE 1 week, 2 weeks, 3 weeks, or 5 weeks after administration.
在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)能够有效治疗或降低患者肥胖,例如维持患者体重和/或体脂,或者降低患者体重和/或体脂,例如其效果优于已知对照siRNA或与已知对照siRNA(例如WO2023003922A1中的AD-1708473或AD-1708473.1)相当。在一些实施方案中,所述的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)具有长效效果,例如在最后一次给药后1周、2周、3周或60天仍然能有有效治疗患者肥胖,例如维持患者体重和/或体脂,或者降低患者体重和/或体脂。In some embodiments, the dsRNA active agents of this disclosure, such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), are effective in treating or reducing obesity in patients, for example, maintaining or reducing patient weight and/or body fat, for example, their effects are superior to or comparable to known control siRNAs (e.g., AD-1708473 or AD-1708473.1 in WO2023003922A1). In some embodiments, the dsRNA active agents, such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), have a long-lasting effect, for example, remaining effective in treating patient obesity, for example, maintaining or reducing patient weight and/or body fat, even 1 week, 2 weeks, 3 weeks, or 60 days after the last administration.
在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)在体内对靶基因INHBE的抑制效果和/或治疗效果(例如降低体重和/或体脂)的效果超出基于体外筛选测定的活性的预期,即相比其体外筛选所预期的活性,在体内具有更好的靶基因抑制活性和/或治疗效果。In some embodiments, the dsRNA activators of this disclosure, such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), exhibit in vivo inhibitory and/or therapeutic effects (e.g., weight loss and/or body fat reduction) on the target gene INHBE that exceed expectations based on in vitro screening assays, i.e., they have better target gene inhibitory activity and/or therapeutic effects in vivo compared to the activity expected during in vitro screening.
在一些实施方案中,本发明的dsRNA活性剂具有如下的(i)和(ii)所述的性质、(i)和(iii)所述的性质、或者(i)、(ii)和(iii)所述的性质:In some embodiments, the dsRNA activator of the present invention has the properties described in (i) and (ii), (i) and (iii), or (i), (ii) and (iii):
(i)所述dsRNA活性剂(特别是具有核苷酸修饰的siRNA,例如XD000155或XD000275)在肝细胞中抑制INHBE mRNA表达,但是其抑制INHBE mRNA表达的水平低于已知对照siRNA,如WO2023003922A1中的AD-1708473,例如通过本文中提供的qPCR方法,在合适的生物细胞系(例如在肝细胞如Hep3B)中,用例如大约1nM或大约0.1nM浓度的dsRNA例如siRNA(例如核苷酸修饰的siRNA)确定表达的抑制,例如实施例3所述的;(i) The dsRNA activator (particularly nucleotide-modified siRNA, such as XD000155 or XD000275) inhibits INHBE mRNA expression in hepatocytes, but at a level lower than that of a known control siRNA, such as AD-1708473 in WO2023003922A1, for example, by using the qPCR method provided herein, in suitable biological cell lines (e.g., in hepatocytes such as Hep3B), to determine the inhibition of expression with, for example, a concentration of about 1 nM or about 0.1 nM of dsRNA, such as siRNA (e.g., nucleotide-modified siRNA), as described in Example 3;
(ii)所述dsRNA活性剂(特别是具有核苷酸修饰的siRNA,特别是具有核苷酸修饰和配体的siRNA,例如XD000155.1或XD000202.1)在肝细胞中抑制INHBE mRNA表达,但是其抑制INHBE mRNA表达的水平低于已知对照siRNA,如WO2023003922A1中的AD-1708473.1,例如通过本文中提供的qPCR方法,在合适的生物细胞系(例如在肝细胞如人原代肝细胞或猴原代肝细胞如)中,用例如不同浓度如梯度稀释的浓度(例如100nM起始,5倍梯度稀释或10倍梯度稀释;或500nM4倍,梯度稀释)或用例如100nM、10nM、1nM或0.1nM浓度的dsRNA例如siRNA(例如具有核苷酸修饰和配体的siRNA)确定表达的抑制,例如实施例4或5或8或9所述的;(ii) The dsRNA activator (particularly nucleotide-modified siRNA, particularly siRNA with nucleotide modifications and ligands, such as XD000155.1 or XD000202.1) inhibits INHBE mRNA expression in hepatocytes, but at a level lower than that of a known control siRNA, such as AD-1708473.1 in WO2023003922A1, for example, by the qPCR method provided herein, in suitable biological cell lines (e.g., in hepatocytes such as human primary hepatocytes or monkey primary hepatocytes), using, for example, different concentrations such as serially diluted concentrations (e.g., 100 nM starting, 5-fold or 10-fold serial dilutions; or 500 nM 4-fold serial dilutions) or using, for example, 100 nM, 10 nM, 1 nM or 0.1 nM concentrations of dsRNA, such as siRNA (e.g., siRNA with nucleotide modifications and ligands), as described in Examples 4 or 5 or 8 or 9;
(iii)所述dsRNA活性剂(特别是具有核苷酸修饰的siRNA,特别是具有核苷酸修饰和配体的siRNA,例如XD000155.1或XD000202.1或XD00275.36)在体内抑制INHBE mRNA表达,且其在体内抑制INHBE mRNA表达的水平高于已知对照siRNA,如WO2023003922A1中的AD-1708473.1,例如通过本文所述的体内检测方法;在一些实施方案中,所述方法包括提取施用了本发明所述的dsRNA活性剂的动物例如小鼠的肝脏组织,并且通过本文提供的PCR方法确定表达的抑制(例如实施例10所述的方法)。(iii) The dsRNA activator (particularly nucleotide-modified siRNA, particularly siRNA with nucleotide modification and ligand, such as XD000155.1, XD000202.1, or XD00275.36) inhibits INHBE mRNA expression in vivo at a level higher than that of a known control siRNA, such as AD-1708473.1 in WO2023003922A1, for example by the in vivo detection methods described herein; in some embodiments, the method includes extracting liver tissue from an animal, such as a mouse, to which the dsRNA activator of the present invention has been administered, and determining the inhibition of expression by PCR methods provided herein (e.g., the method described in Example 10).
因此,在一些实施方案中,本公开的dsRNA活性剂例如siRNA(涵盖具有修饰的核苷酸的siRNA和具有修饰的核苷酸和配体的siRNA)在体外对靶基因INHBE的抑制效果低于已知对照siRNA,如WO2023003922A1中的AD-1708473.1,但是在体内对靶基因INHBE的抑制效果和/或治疗效果(例如降低体重和/或体脂)的效果优于该相同的对照。Therefore, in some embodiments, the dsRNA activators of this disclosure, such as siRNA (including siRNA with modified nucleotides and siRNA with modified nucleotides and ligands), exhibit lower in vitro inhibitory effects on the target gene INHBE than known control siRNAs, such as AD-1708473.1 in WO2023003922A1, but are superior to the same control in vivo in terms of inhibitory and/or therapeutic effects (e.g., reduction of weight and/or body fat) on the target gene INHBE.
在一些实施方案中,dsRNA活性剂包含反义链,所述反义链包含与在INHBE基因的表达中形成的mRNA的至少一部分(例如靶序列)互补(基本互补或完全互补)的互补区。在一些实施方案中,互补区的长度是约15至30个核苷酸,例如16至30个核苷酸、17至30个核苷酸或18个至30个核苷酸(例如,长度是约30个、29个、28个、27个、26个、25个、24个、23个、22个、21个、20个、19个、18个、17个、16个或15个核苷酸)。在一些实施方案中,互补区的长度是18个与23个核苷酸之间。在一些实施方案中,互补区的长度是19个至23个核苷酸。在一些实施方案中,互补区的长度是18个至21个核苷酸。在一些实施方案中,互补区的长度是18个、19个、20个或21个核苷酸。在一些实施方案中,互补区的长度是或至少是15、16、17、18、19或20个核苷酸。在一些实施方案中,反义链从5’端起算的第二个核苷酸开始与mRNA靶序列互补。在一些实施方案中,反义链的互补区包含从5’端起算的第二个核苷酸开始至3’端起算的第3、2或1个核苷酸结束。在一些实施方案中,反义链的互补区包含从5’端起算的第二个核苷酸开始的全部反义链核苷酸。在一些实施方案中,反义链的互补区至少包含反义链5’端起算的2-16位核苷酸、2-17位核苷酸、2-18位核苷酸、2-19位核苷酸、2-20位核苷酸或2-21位核苷酸。在一些实施方案中,反义链的互补区至少包含反义链5’端起算的2-19位连续核苷酸。在一些实施方案中,反义链的互补区包含反义链5’端起算的2-19位、2-20位或2-21位的连续核苷酸,或由其组成。In some embodiments, the dsRNA activator comprises an antisense strand containing a complementary region that is complementary (substantially complementary or fully complementary) to at least a portion (e.g., a target sequence) of the mRNA formed during INHBE gene expression. In some embodiments, the length of the complementary region is about 15 to 30 nucleotides, such as 16 to 30, 17 to 30, or 18 to 30 nucleotides (e.g., lengths of about 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, or 15 nucleotides). In some embodiments, the length of the complementary region is between 18 and 23 nucleotides. In some embodiments, the length of the complementary region is 19 to 23 nucleotides. In some embodiments, the length of the complementary region is 18 to 21 nucleotides. In some embodiments, the length of the complementary region is 18, 19, 20, or 21 nucleotides. In some embodiments, the length of the complementary region is 15, 16, 17, 18, 19, or 20 nucleotides. In some embodiments, the antisense strand is complementary to the mRNA target sequence starting from the second nucleotide from the 5' end. In some embodiments, the complementary region of the antisense strand comprises the second nucleotide from the 5' end to the 3rd, 2nd, or 1st nucleotide from the 3' end. In some embodiments, the complementary region of the antisense strand comprises all antisense strand nucleotides starting from the second nucleotide from the 5' end. In some embodiments, the complementary region of the antisense strand comprises at least nucleotides 2-16, 2-17, 2-18, 2-19, 2-20, or 2-21 from the 5' end of the antisense strand. In some embodiments, the complementary region of the antisense strand comprises at least 2-19 consecutive nucleotides from the 5' end of the antisense strand. In some implementations, the complementary region of the antisense strand comprises, or is composed of, consecutive nucleotides at positions 2-19, 2-20, or 2-21, starting from the 5' end of the antisense strand.
在一些实施方案中,dsRNA包含两条互补并且在将使dsRNA杂交的条件下形成双链体结构(双链区或双链体区)的RNA链,即反义链和正义链。In some implementations, the dsRNA comprises two complementary RNA strands that form a double-stranded structure (double-stranded region or double-stranded region) under conditions that will cause the dsRNA to hybridize, namely the antisense strand and the sense strand.
在一些实施方案中,dsRNA的一条链(反义链)包含与靶序列基本上互补或完全互补的互补区(反义链互补区)。因此,dsRNA的反义链互补区可以与靶序列基本上互补或完全互补。靶序列可以源自在INHBE基因表达期间形成的mRNA的序列。在一些实施方案中,所述反义链互补区与靶序列基本上互补,例如其与靶序列在1、2、3、4或5个核苷酸上(优选地在5’端和/或3’端的1个或2个核苷酸,例如在反义链的5’端的第一个核苷酸)错配。在一些实施方案中,所述反义链互补区与靶序列完全互补。In some embodiments, one strand of the dsRNA (antisense strand) contains a complementary region (antisense complement) that is substantially or completely complementary to the target sequence. Therefore, the antisense complement of the dsRNA can be substantially or completely complementary to the target sequence. The target sequence can be derived from the sequence of mRNA formed during INHBE gene expression. In some embodiments, the antisense complement is substantially complementary to the target sequence, for example, it is mismatched with the target sequence at 1, 2, 3, 4, or 5 nucleotides (preferably 1 or 2 nucleotides at the 5' and/or 3' ends, e.g., the first nucleotide at the 5' end of the antisense strand). In some embodiments, the antisense complement is completely complementary to the target sequence.
另一条链(正义链)包含与反义链互补的区,使得两条链在适当条件下组合时杂交并形成双链体结构(双链体区)。The other chain (the justice chain) contains regions complementary to the antisense chain, allowing the two chains to hybridize and form a bistranded structure (bistranded region) when combined under appropriate conditions.
在一些实施方案中,dsRNA的反义链从5’端起算的第二个核苷酸开始与靶序列相应部分完全互补。在一些实施方案中,dsRNA的反义链从5’端起算的第二个核苷酸开始至3’端起算的第1、2或3个核苷酸结束与靶序列相应部分完全互补。在一些实施方案中,dsRNA的反义链从5’端起算的第二个核苷酸开始全长与靶序列相应部分完全互补。在一些实施方案中,dsRNA的反义链从5’端起算的2-16位核苷酸、2-17位核苷酸、2-18位核苷酸、2-19位核苷酸、2-20位核苷酸或2-21位核苷酸与靶序列相应部分完全互补。在一些实施方案中,dsRNA的反义链从5’端起算的2-19位或2-20位或2-21位的连续核苷酸与靶序列相应部分完全互补。在一些实施方案中,dsRNA的反义链与靶序列具有相同的核苷酸个数且在除5’端第一个核苷酸之外的全部核苷酸序列区完全互补,其中所述反义链的第一个核苷酸是U或A。在一些实施方案中,所述反义链全长与靶序列完全互补。In some embodiments, the antisense strand of the dsRNA, starting from the second nucleotide from the 5' end, is completely complementary to the corresponding portion of the target sequence. In some embodiments, the antisense strand of the dsRNA, from the second nucleotide from the 5' end to the first, second, or third nucleotide from the 3' end, is completely complementary to the corresponding portion of the target sequence. In some embodiments, the entire length of the antisense strand of the dsRNA, starting from the second nucleotide from the 5' end, is completely complementary to the corresponding portion of the target sequence. In some embodiments, nucleotides 2-16, 2-17, 2-18, 2-19, 2-20, or 2-21 of the antisense strand of the dsRNA, starting from the 5' end, are completely complementary to the corresponding portion of the target sequence. In some embodiments, consecutive nucleotides from positions 2-19, 2-20, or 2-21 of the antisense strand of the dsRNA, starting from the 5' end, are completely complementary to the corresponding portion of the target sequence. In some embodiments, the antisense strand of the dsRNA has the same number of nucleotides as the target sequence and is completely complementary to the target sequence in all nucleotide sequences except for the first nucleotide at the 5' end, wherein the first nucleotide of the antisense strand is U or A. In some embodiments, the full length of the antisense strand is completely complementary to the target sequence.
当本文中提及与“靶序列相应部分”完全互补时,是指靶序列中与反义链中完全互补的连续核苷酸序列。例如,当靶序列为21个核苷酸且其自1-20位的连续核苷酸与反义链的第2-21位核苷酸完全互补时,所述“靶序列相应部分”是指靶序列的第1-20位连续核苷酸。When "the corresponding portion of the target sequence" is mentioned in this document, it refers to a consecutive nucleotide sequence in the target sequence that is completely complementary to the antisense strand. For example, when the target sequence is 21 nucleotides and its consecutive nucleotides from position 1 to 20 are completely complementary to the nucleotides from position 2 to 21 of the antisense strand, the "corresponding portion of the target sequence" refers to the consecutive nucleotides from position 1 to 20 of the target sequence.
在一些实施方案中,本文所述的dsRNA靶向表1中所示的INHBE基因组(例如NM_031479.5)mRNA的位置处或附近的INHBE基因的序列。In some implementations, the dsRNA described herein targets the INHBE gene sequence at or near the location of the INHBE genome mRNA shown in Table 1 (e.g., NM_031479.5).
在一些实施方案中,本文所述的dsRNA靶向INHBE基因组(例如NM_031479.5)mRNA或SEQ ID NO:664所示的核酸序列或其互补序列中的任意15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30、31、32、33、34或35个连续的核苷酸,例如19-23个连续的核苷酸,例如SEQ ID NO:664所示的核酸序列的第35-55、36-56、40-60、501-521、503-523、504-524、507-527、638-658、880-900、978-998、980-1000、1096-1116、1109-1129、1202-1222、1206-1226、1220-1240、1301-1321、1308-1328、1309-1329、1310-1330、1346-1366、1352-1372、1355-1375、1357-1377、1387-1407、1390-1410、1393-1413、1397-1417、1436-1456、1444-1464、1445-1465、1446-1466、1447-1467、1448-1468、1449-1469、1450-1470、1462-1482、1465-1485、1588-1608、1589-1609、1618-1638、1621-1641、1622-1642、1623-1643、1647-1667、1862-1882、1863-1883、2044-2064、2048-2068、2053-2073、2054-2074、2055-2075、2056-2076、2057-2077、2058-2078、2059-2079、2161-2181、2162-2182、2163-2183、2164-2184、2206-2226、2207-2227、2235-2255、2237-2257、2238-2258、2240-2260、2241-2261、2242-2262、2243-2263、2244-2264、2245-2265、2246-2266、2247-2267、2349-2369、2376-2396、2377-2397、2404-2424、2405-2425、2406-2426、2408-2428、2410-2430、2411-2431、2412-2432、2413-2433、2420-2440、361-381、365-385、369-389、506-526、515-535、516-536、518-538、882-902、1036-1056、1037-1057、1107-1127、1125-1145、1299-1319、1350-1370、1351-1371、1353-1373、1398-1418、1399-1419、1400-1420、1403-1423、1404-1424、1443-1463、1587-1607、2160-2180或2296-2316位所对应的序列。In some implementations, the dsRNA described herein targets any 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, or 35 consecutive nucleotides, such as 19-23, of the INHBE genome mRNA (e.g., NM_031479.5) or the nucleic acid sequence shown in SEQ ID NO:664 or its complementary sequence. A series of consecutive nucleotides, such as nucleotides 35-55, 36-56, 40-60, 501-521, 503-523, 504-524, 507-527, 638-658, 880-900, 978-998, 980-1000, 1096-1116, 1109-1129, 1202-1222, 1206-1226, 12 20-1240, 1301-1321, 1308-1328, 1309-1329, 1310-1330, 1346-1366, 1352-1372, 1355-1375, 1357-1377, 1387-1407, 1390-1410, 1393-1413, 1397-1417, 1436-1456, 1444-1464, 1445-146 5, 1446-1466, 1447-1467, 1448-1468, 1449-1469, 1450-1470, 1462-1482, 1465-1485, 1588-1608, 1589-1609, 1618-1638, 1621-1641, 1622-1642, 1623-1643, 1647-1667, 1862-1882, 1863- 1883, 2044-2064, 2048-2068, 2053-2073, 2054-2074, 2055-2075, 2056-2076, 2057-2077, 2058-2078, 2059-2079, 2161-2181, 2162-2182, 2163-2183, 2164-2184, 2206-2226, 2207-2227, 2 235-2255, 2237-2257, 2238-2258, 2240-2260, 2241-2261, 2242-2262, 2243-2263, 2244-2264, 2245-2265, 2246-2266, 2247-2267, 2349-2369, 2376-2396, 2377-2397, 2404-2424, 2405-242 5. 2406-2426, 2408-2428, 2410-2430, 2411-2431, 2412-2432, 2413-2433, 2420-2440, 361-381, 365-385, 369-389, 506-526, 515-535, 516-536, 518-538, 882-902, 1036-1056, 1037-1057 The sequences corresponding to bits 1107-1127, 1125-1145, 1299-1319, 1350-1370, 1351-1371, 1353-1373, 1398-1418, 1399-1419, 1400-1420, 1403-1423, 1404-1424, 1443-1463, 1587-1607, 2160-2180, or 2296-2316.
在一些实施方案中,本文所述的dsRNA靶向选自如下的INHBE基因的mRNA的核苷酸序列(靶序列):In some implementations, the dsRNA described herein targets a nucleotide sequence (target sequence) of the mRNA of the INHBE gene selected from the following:
(i)如表1所示的INHBE基因组(例如NM_031479.5)mRNA位置处或附近(例如前后10个核苷酸范围内)的INHBE mRNA的连续序列,例如所述位置或附近的15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30、31、32、33、34或35个连续的核苷酸;(i) A continuous sequence of INHBE mRNA at or near the location of the INHBE genome (e.g., NM_031479.5) mRNA as shown in Table 1, for example, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34 or 35 consecutive nucleotides at or near the location;
(ii)INHBE基因组(例如NM_031479.5)mRNA或SEQ ID NO:664所示的核酸序列或其互补序列的第35、36、40、361、365、369、501、503、504、506、507、515、516、518、638、880、882、978、980、1036、1037、1096、1107、1109、1125、1202、1206、1220、1299、1301、1308、1309、1310、1346、1350、1351、1352、1353、1355、1357、1387、1390、1393、1397、1398、1399、1400、1403、1404、1436、1443、1444、1445、1446、1447、1448、1449、1450、1462、1465、1587、1588、1589、1618、1621、1622、1623、1647、1862、1863、2044、2048、2053、2054、2055、2056、2057、2058、2059、2160、2161、2162、2163、2164、2206、2207、2235、2237、2238、2240、2241、2242、2243、2244、2245、2246、2247、2296、2349、2376、2377、2404、2405、2406、2408、2410、2411、2412、2413或2420位起始的至少15-35个连续核苷酸,例如18、19、20或21个连续核苷酸;(ii) The 35th, 36th, 40th, 361st, 365th, 369th, 501st, 503rd, 504th, 506th, 507th, 515th, 516th, 518th, 638th, 880th, 882nd, 978th, 980th, 1036th, 1037th, 1096th, 1107th, and 110th nucleotides of the INHBE genome (e.g., NM_031479.5) mRNA or the nucleic acid sequence shown in SEQ ID NO: 664 or its complementary sequence. 9, 1125, 1202, 1206, 1220, 1299, 1301, 1308, 1309, 1310, 1346, 1350, 1351, 1352, 1353, 1355, 1357, 1387, 1390, 1393, 1397, 1398, 1399, 1400, 1403, 1404, 1436, 1443, 1444, 1445, 1446, 1447 1448, 1449, 1450, 1462, 1465, 1587, 1588, 1589, 1618, 1621, 1622, 1623, 1647, 1862, 1863, 2044, 2048, 2053, 2054, 2055, 2056, 2057, 2058, 2059, 2160, 2161, 2162, 2163, 2164, 2206, 2207 At least 15-35 consecutive nucleotides, such as 18, 19, 20 or 21 consecutive nucleotides, starting at position 2235, 2237, 2238, 2240, 2241, 2242, 2243, 2244, 2245, 2246, 2247, 2296, 2349, 2376, 2377, 2404, 2405, 2406, 2408, 2410, 2411, 2412, 2413 or 2420;
(iii)INHBE基因组(例如NM_031479.5)mRNA或SEQ ID NO:664所示的核酸序列或其互补序列中的包含第35-55、36-56、40-60、501-521、503-523、504-524、507-527、638-658、880-900、978-998、980-1000、1096-1116、1109-1129、1202-1222、1206-1226、1220-1240、1301-1321、1308-1328、1309-1329、1310-1330、1346-1366、1352-1372、1355-1375、1357-1377、1387-1407、1390-1410、1393-1413、1397-1417、1436-1456、1444-1464、1445-1465、1446-1466、1447-1467、1448-1468、1449-1469、1450-1470、1462-1482、1465-1485、1588-1608、1589-1609、1618-1638、1621-1641、1622-1642、1623-1643、1647-1667、1862-1882、1863-1883、2044-2064、2048-2068、2053-2073、2054-2074、2055-2075、2056-2076、2057-2077、2058-2078、2059-2079、2161-2181、2162-2182、2163-2183、2164-2184、2206-2226、2207-2227、2235-2255、2237-2257、2238-2258、2240-2260、2241-2261、2242-2262、2243-2263、2244-2264、2245-2265、2246-2266、2247-2267、2349-2369、2376-2396、2377-2397、2404-2424、2405-2425、2406-2426、2408-2428、2410-2430、2411-2431、2412-2432、2413-2433、2420-2440、361-381、365-385、369-389、506-526、515-535、516-536、518-538、882-902、1036-1056、1037-1057、1107-1127、1125-1145、1299-1319、1350-1370、1351-1371、1353-1373、1398-1418、1399-1419、1400-1420、1403-1423、1404-1424、1443-1463、1587-1607、2160-2180或2296-2316位所对应的序列的22、23、24、25、26、27、28、29、30、31、32、33、34或35个连续的核苷酸;(iii) The INHBE genome (e.g., NM_031479.5) mRNA or the nucleic acid sequence shown in SEQ ID NO: 664 or its complementary sequence containing digits 35-55, 36-56, 40-60, 501-521, 503-523, 504-524, 507-527, 638-658, 880-900, 978-998, 980-1000, 1096-1116, 1109-1129, 1202-1222, 1206-1226, 1220-1240, 1301-1321, 1308-1328, 1309-1329, 1310-1330, 1346-1366, 1352-1372, 1355-1375, 1357-1377, 1387-1407, 1390-14 10, 1393-1413, 1397-1417, 1436-1456, 1444-1464, 1445-1465, 1446-1466, 1447-1467, 1448-1468, 1449-1469, 1450-1470, 1462-1482, 1465-1485, 1588-1608, 1589-1609, 1618 -1638, 1621-1641, 1622-1642, 1623-1643, 1647-1667, 1862-1882, 1863-1883, 2044-2064, 2048-2068, 2053-2073, 2054-2074, 2055-2075, 2056-2076, 2057-2077, 2058-2078, 2 059-2079, 2161-2181, 2162-2182, 2163-2183, 2164-2184, 2206-2226, 2207-2227, 2235-2255, 2237-2257, 2238-2258, 2240-2260, 2241-2261, 2242-2262, 2243-2263, 2244-226 4. 2245-2265, 2246-2266, 2247-2267, 2349-2369, 2376-2396, 2377-2397, 2404-2424, 2405-2425, 2406-2426, 2408-2428, 2410-2430, 2411-2431, 2412-2432, 2413-2433, 2420- 2440, 361-381, 365-385, 369-389, 506-526, 515-535, 516-536, 518-538, 882-902, 1036-1056, 1037-1057, 1107-1127, 1125-1145, 1299-1319, 1350-1370, 1351-1371, 1353-137 3. The 22nd, 23rd, 24th, 25th, 26th, 27th, 28th, 29th, 30th, 31st, 32nd, 33rd, 34th, or 35th consecutive nucleotides of the sequence corresponding to positions 1398-1418, 1399-1419, 1400-1420, 1403-1423, 1404-1424, 1443-1463, 1587-1607, 2160-2180, or 2296-2316;
(iv)INHBE基因组(例如NM_031479.5)mRNA或SEQ ID NO:664所示的核酸序列中的第35-55、36-56、40-60、501-521、503-523、504-524、507-527、638-658、880-900、978-998、980-1000、1096-1116、1109-1129、1202-1222、1206-1226、1220-1240、1301-1321、1308-1328、1309-1329、1310-1330、1346-1366、1352-1372、1355-1375、1357-1377、1387-1407、1390-1410、1393-1413、1397-1417、1436-1456、1444-1464、1445-1465、1446-1466、1447-1467、1448-1468、1449-1469、1450-1470、1462-1482、1465-1485、1588-1608、1589-1609、1618-1638、1621-1641、1622-1642、1623-1643、1647-1667、1862-1882、1863-1883、2044-2064、2048-2068、2053-2073、2054-2074、2055-2075、2056-2076、2057-2077、2058-2078、2059-2079、2161-2181、2162-2182、2163-2183、2164-2184、2206-2226、2207-2227、2235-2255、2237-2257、2238-2258、2240-2260、2241-2261、2242-2262、2243-2263、2244-2264、2245-2265、2246-2266、2247-2267、2349-2369、2376-2396、2377-2397、2404-2424、2405-2425、2406-2426、2408-2428、2410-2430、2411-2431、2412-2432、2413-2433、2420-2440、361-381、365-385、369-389、506-526、515-535、516-536、518-538、882-902、1036-1056、1037-1057、1107-1127、1125-1145、1299-1319、1350-1370、1351-1371、1353-1373、1398-1418、1399-1419、1400-1420、1403-1423、1404-1424、1443-1463、1587-1607、2160-2180或2296-2316位所对应的序列的任意15、16、17、18、19、20或21个连续的核苷酸,优选所述位置所对应的核苷酸序列;或(iv) INHBE genome (e.g., NM_031479.5) mRNA or nucleic acid sequences of SEQ ID NO: 664, numbers 35-55, 36-56, 40-60, 501-521, 503-523, 504-524, 507-527, 638-658, 880-900, 978-998, 980-1000, and 1096-11. 16, 1109-1129, 1202-1222, 1206-1226, 1220-1240, 1301-1321, 1308-1328, 1309-1329, 1310-1330, 1346-1366, 1352-1372, 1355-1375, 1357-1377, 1387-1407, 1390-1410, 139 3-1413, 1397-1417, 1436-1456, 1444-1464, 1445-1465, 1446-1466, 1447-1467, 1448-1468, 1449-1469, 1450-1470, 1462-1482, 1465-1485, 1588-1608, 1589-1609, 1618-1638 1621-1641, 1622-1642, 1623-1643, 1647-1667, 1862-1882, 1863-1883, 2044-2064, 2048-2068, 2053-2073, 2054-2074, 2055-2075, 2056-2076, 2057-2077, 2058-2078, 2059- 2079, 2161-2181, 2162-2182, 2163-2183, 2164-2184, 2206-2226, 2207-2227, 2235-2255, 2237-2257, 2238-2258, 2240-2260, 2241-2261, 2242-2262, 2243-2263, 2244-2264, 2245-2265, 2246-2266, 2247-2267, 2349-2369, 2376-2396, 2377-2397, 2404-2424, 2405-2425, 2406-2426, 2408-2428, 2410-2430, 2411-2431, 2412-2432, 2413-2433, 2420-2 440, 361-381, 365-385, 369-389, 506-526, 515-535, 516-536, 518-538, 882-902, 1036-1056, 1037-1057, 1107-1127, 1125-1145, 1299-1319, 1350-1370, 1351-1371, 1353-137 3. Any 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides of the sequence corresponding to positions 1398-1418, 1399-1419, 1400-1420, 1403-1423, 1404-1424, 1443-1463, 1587-1607, 2160-2180, or 2296-2316, preferably the nucleotide sequence corresponding to the positions mentioned above; or
(v)包含或由SEQ ID NO:221-330中任一项所示的核苷酸序列组成的核苷酸序列。(v) A nucleotide sequence that contains or consists of the nucleotide sequences shown in any of SEQ ID NO:221-330.
在一些实施方案中,本文所述的dsRNA所靶向的mRNA序列包含表1所示的INHBE基因的位置所对应的mRNA靶序列,或由所述序列组成。In some implementations, the mRNA sequence targeted by the dsRNA described herein includes, or is composed of, the mRNA target sequence corresponding to the location of the INHBE gene shown in Table 1.
在一些实施方案中,本文所公开的dsRNA的反义链包含与表1所示的INHBE基因组(例如NM_031479.5)mRNA位置所对应的靶序列完全、基本上或至少部分互补的互补区。在一些实施方案中,本文所公开的dsRNA的反义链包含与表2中所公开的mRNA序列(靶序列)完全、基本上或至少部分互补的核心序列(互补区)。在一些实施方案中,本文所述的dsRNA所靶向的INHBE mRNA靶序列包含SEQ ID NO:221-330中任一项所示的核苷酸序列或由所述核苷酸序列组成。在一些实施方案中,所述靶序列包含表1中所示的INHBE基因组(例如NM_031479.5)mRNA位置处或附近的INHBE mRNA的连续序列。在一些实施方案中,所述dsRNA的反义链与INHBE靶序列(例如表2所示的靶序列)的核苷酸个数相同。In some embodiments, the antisense strand of the dsRNA disclosed herein contains a complementary region that is completely, substantially, or at least partially complementary to the target sequence corresponding to the INHBE genome (e.g., NM_031479.5) mRNA location shown in Table 1. In some embodiments, the antisense strand of the dsRNA disclosed herein contains a core sequence (complementary region) that is completely, substantially, or at least partially complementary to the mRNA sequence (target sequence) disclosed in Table 2. In some embodiments, the INHBE mRNA target sequence targeted by the dsRNA described herein comprises or is composed of the nucleotide sequence shown in any of SEQ ID NO: 221-330. In some embodiments, the target sequence comprises a continuous sequence of INHBE mRNA at or near the INHBE genome (e.g., NM_031479.5) mRNA location shown in Table 1. In some embodiments, the antisense strand of the dsRNA has the same number of nucleotides as the INHBE target sequence (e.g., the target sequence shown in Table 2).
在一些实施方案中,所述dsRNA的反义链与INHBE mRNA靶序列(例如表1所示的位置所对应的mRNA靶序列或表2所示的mRNA靶序列)完全互补、基本上或至少部分的互补。在一些实施方案中,所述dsRNA的反义链与INHBE mRNA靶序列(例如表1所示的位置所对应的mRNA靶序列或表2所示的mRNA靶序列)的核苷酸个数相同或相差1、2或3个核苷酸个数。在一些实施方案中,所述dsRNA的反义链与INHBE mRNA靶序列(例如表1所示的位置所对应的mRNA靶序列或表2所示的mRNA靶序列)完全互补。在一些实施方案中,反义链与靶序列包含1、2、3、4或5个非互补位点(错配),例如1-3个核苷酸错配。In some embodiments, the antisense strand of the dsRNA is fully complementary, substantially complementary, or at least partially complementary to the INHBE mRNA target sequence (e.g., the mRNA target sequence corresponding to the position shown in Table 1 or the mRNA target sequence shown in Table 2). In some embodiments, the antisense strand of the dsRNA has the same number of nucleotides as or differs from the INHBE mRNA target sequence (e.g., the mRNA target sequence corresponding to the position shown in Table 1 or the mRNA target sequence shown in Table 2) by 1, 2, or 3 nucleotides. In some embodiments, the antisense strand of the dsRNA is fully complementary to the INHBE mRNA target sequence (e.g., the mRNA target sequence corresponding to the position shown in Table 1 or the mRNA target sequence shown in Table 2). In some embodiments, the antisense strand contains 1, 2, 3, 4, or 5 non-complementary sites (mismatches), for example, 1-3 nucleotide mismatches.
在一些实施方案中,所述dsRNA的反义链与INHBE基因靶序列(例如表1所示的位置所对应的靶序列或表2所示的mRNA靶序列)在除5’端的第一个核苷酸之外的区域与靶序列的除3’端第1个或第2个核苷酸之外的区域完全互补。在一些实施方案中,所述dsRNA的反义链在5’端的第一个核苷酸是U或A,例如U,例如为了更容易被Ago2蛋白识别形成RICS复合物。In some embodiments, the antisense strand of the dsRNA is completely complementary to the INHBE gene target sequence (e.g., the target sequence corresponding to the position shown in Table 1 or the mRNA target sequence shown in Table 2) in the region excluding the first nucleotide at the 5' end, and to the region excluding the first or second nucleotide at the 3' end of the target sequence. In some embodiments, the first nucleotide at the 5' end of the antisense strand of the dsRNA is U or A, for example, U, to facilitate recognition by the Ago2 protein to form the RICS complex.
在一些实施方案中,所述正义链和所述反义链的长度各自独立地为15-30个核苷酸,例如17-27个、例如19-25个核苷酸,例如18-25个核苷酸、例如18-24个核苷酸、例如18-23个核苷酸、例如19-23个核苷酸、例如19-22个核苷酸或例如19-21个核苷酸。在一些实施方案中,反义链或正义链的长度独立的不超过27、26、25、24、23、22、21、20或19个核苷酸。在一些实施方案中,反义链或正义链的长度独立的不小于15、16、17、18或19个核苷酸。在一些实施方案中,正义链的长度是18-21个核苷酸(例如18、19、20或21个核苷酸),并且所述反义链的长度是19-22个核苷酸(例如19、20、21或22个核苷酸)。在一些实施方案中,正义链的长度是18或19个核苷酸,并且所述反义链的长度是19-21个核苷酸。在一些实施方案中,正义链的长度是19个核苷酸,并且所述反义链的长度是21个核苷酸。In some embodiments, the length of the positive and negative strands is independently 15-30 nucleotides, such as 17-27, 19-25, 18-24, 18-23, 19-22, or 19-21 nucleotides. In some embodiments, the length of the positive or negative strand is independently no more than 27, 26, 25, 24, 23, 22, 21, 20, or 19 nucleotides. In some embodiments, the length of the positive or negative strand is independently not less than 15, 16, 17, 18, or 19 nucleotides. In some embodiments, the length of the positive or negative strand is 18-21 nucleotides (e.g., 18, 19, 20, or 21 nucleotides), and the length of the negative strand is 19-22 nucleotides (e.g., 19, 20, 21, or 22 nucleotides). In some embodiments, the length of the sense strand is 18 or 19 nucleotides, and the length of the antisense strand is 19-21 nucleotides. In some embodiments, the length of the sense strand is 19 nucleotides, and the length of the antisense strand is 21 nucleotides.
在一些实施方案中,所述双链体区的长度是15个至30个核苷酸对。在一些实施方案中,所述双链区的长度是15个至25个核苷酸对或16个至25个核苷酸对。在一些实施方案中,所述双链区的长度是16个至24个核苷酸对或17个至24个核苷酸对。在一些实施方案中,所述双链区的长度是17个至23个核苷酸对或18个至23个核苷酸对。在一些实施方案中,所述双链区的长度是16个至22个核苷酸对、17个至22个核苷酸对、18个至22个核苷酸对或19个至22个核苷酸对。在一些实施方案中,所述双链区的长度是16个至21个核苷酸对,例如16、17、18、19、20或21个核苷酸对。在一些实施方案中,所述双链区的长度是19个至21个核苷酸对。在一些实施方案中,所述双链区的长度是18、19、20或21个核苷酸对,例如19个核苷酸对。In some embodiments, the length of the double-stranded region is 15 to 30 nucleotide pairs. In some embodiments, the length of the double-stranded region is 15 to 25 nucleotide pairs or 16 to 25 nucleotide pairs. In some embodiments, the length of the double-stranded region is 16 to 24 nucleotide pairs or 17 to 24 nucleotide pairs. In some embodiments, the length of the double-stranded region is 17 to 23 nucleotide pairs or 18 to 23 nucleotide pairs. In some embodiments, the length of the double-stranded region is 16 to 22 nucleotide pairs, 17 to 22 nucleotide pairs, 18 to 22 nucleotide pairs, or 19 to 22 nucleotide pairs. In some embodiments, the length of the double-stranded region is 16 to 21 nucleotide pairs, for example, 16, 17, 18, 19, 20, or 21 nucleotide pairs. In some embodiments, the length of the double-stranded region is 19 to 21 nucleotide pairs. In some implementations, the length of the double-stranded region is 18, 19, 20, or 21 nucleotide pairs, for example, 19 nucleotide pairs.
在一些实施方案中,所述正义链和反义链形成的双链体区是完全互补的。在另一些实施方案中,正义链和反义链形成的双链体区是基本上互补的,其中可以包含1个、2个、3个、4个或5个非互补位点(错配)。在一些实施方案中,所述完全互补的双链体区的长度是至少15个、16个、17个、18个或19个核苷酸。在一些实施方案中,所述完全互补的双链体区的长度介于15个至25个核苷酸、16个至25个核苷酸对、16个至24个核苷酸对、17个至24个核苷酸对、17个至23个核苷酸对、18个至23个核苷酸对或19个至22个核苷酸之间。在一些实施方案中,所述完全互补的双链区的长度是16个、17个、18个、19个、20或21个核苷酸,例如19个核苷酸。In some embodiments, the double-stranded region formed by the sense and antisense strands is completely complementary. In other embodiments, the double-stranded region formed by the sense and antisense strands is substantially complementary, and may contain one, two, three, four, or five non-complementary sites (mismatches). In some embodiments, the length of the completely complementary double-stranded region is at least 15, 16, 17, 18, or 19 nucleotides. In some embodiments, the length of the completely complementary double-stranded region is between 15 and 25 nucleotides, 16 and 25 nucleotide pairs, 16 and 24 nucleotide pairs, 17 and 24 nucleotide pairs, 17 and 23 nucleotide pairs, 18 and 23 nucleotide pairs, or 19 and 22 nucleotides. In some embodiments, the length of the completely complementary double-stranded region is 16, 17, 18, 19, 20, or 21 nucleotides, for example, 19 nucleotides.
本文所述的dsRNA可以进一步包含一个或多个单链核苷酸突出端,例如,1至4个、2至4个、1至3个、2至3个、1个、2个、3个或4个核苷酸。在一些实施方案中,具有至少一个核苷酸突出端的dsRNA相对于其平端对应物具有更好的抑制特性。核苷酸突出端可以包括以下或由以下组成:核苷酸/核苷类似物,包含脱氧核苷酸/核苷。突出端可以在正义链、反义链或其任何组合上。此外,突出端的核苷酸可以存在于dsRNA的反义链或正义链的5’端、3’端或两端上。The dsRNA described herein may further comprise one or more single-stranded nucleotide overhangs, for example, 1 to 4, 2 to 4, 1 to 3, 2 to 3, 1, 2, 3, or 4 nucleotides. In some embodiments, dsRNA having at least one nucleotide overhang has better repressive properties relative to its blunt-ended counterpart. The nucleotide overhang may include or consist of nucleotide/nucleoside analogs comprising deoxynucleotides/nucleosides. The overhang may be on the sense strand, antisense strand, or any combination thereof. Furthermore, the overhanging nucleotide may be present at the 5' end, 3' end, or both ends of the antisense strand or sense strand of the dsRNA.
在一些实施方案中,所述正义链和所述反义链之一或两者包含具有至少1、2或3个核苷酸的3’突出端和/或5’突出端,例如所述正义链和所述反义链之一或两者包含具有至少1个核苷酸的3’突出端和/或5’突出端。在一些实施方案中,至少一条链包括至少1个核苷酸的3’突出端或5’突出端。在一些实施方案中,至少一条链包括至少2个核苷酸的3’突出端或5’突出端。在一些实施方案中,至少一条链包括至少3个核苷酸的3’突出端或5’突出端。In some embodiments, one or both of the sense strand and the antisense strand include a 3' overhang and/or a 5' overhang having at least 1, 2, or 3 nucleotides; for example, one or both of the sense strand and the antisense strand include a 3' overhang and/or a 5' overhang having at least 1 nucleotide. In some embodiments, at least one strand includes a 3' overhang or a 5' overhang having at least 1 nucleotide. In some embodiments, at least one strand includes a 3' overhang or a 5' overhang having at least 2 nucleotides. In some embodiments, at least one strand includes a 3' overhang or a 5' overhang having at least 3 nucleotides.
在一些优选的实施方案中,所述反义链具有至少1个核苷酸的3’突出端和/或5’突出端,例如所述反义链包含具有1个核苷酸的3’突出端和/或5’突出端。在一些优选的实施方案中,所述反义链具有至少2个核苷酸的3’突出端和/或5’突出端,例如所述反义链包含具有2个核苷酸的3’突出端和/或5’突出端。在一些优选的实施方案中,所述反义链具有至少3个核苷酸的3’突出端和/或5’突出端,例如所述反义链包含具有3个核苷酸的3’突出端和/或5’突出端。在优选的实施方案中,所述反义链在3’端具有1、2或3个核苷酸的3’突出端,例如2个核苷酸的3’突出端。In some preferred embodiments, the antisense strand has a 3' overhang of at least one nucleotide and/or a 5' overhang; for example, the antisense strand comprises a 3' overhang of one nucleotide and/or a 5' overhang. In some preferred embodiments, the antisense strand has a 3' overhang of at least two nucleotides and/or a 5' overhang; for example, the antisense strand comprises a 3' overhang of two nucleotides and/or a 5' overhang. In some preferred embodiments, the antisense strand has a 3' overhang of at least three nucleotides and/or a 5' overhang; for example, the antisense strand comprises a 3' overhang of three nucleotides and/or a 5' overhang. In a preferred embodiment, the antisense strand has a 3' overhang of one, two, or three nucleotides at the 3' end, for example, a 3' overhang of two nucleotides.
在一些实施方案中,所述正义链包含具有至少1、2或3个核苷酸的5’突出端,和/或所述反义链包含具有至少1、2或3个核苷酸的3’突出端。In some embodiments, the sense strand includes a 5' overhang with at least 1, 2, or 3 nucleotides, and/or the antisense strand includes a 3' overhang with at least 1, 2, or 3 nucleotides.
在一些实施方案中,所述dsRNA的反义链在3’端具有突出端,例如2个核苷酸的3’突出端,且在5’端是平端。In some embodiments, the antisense strand of the dsRNA has a 3' overhang, for example, a 2-nucleotide 3' overhang, and a blunt end at the 5' end.
在一些实施方案中,本发明涉及一种用于抑制抑制素亚基βE(INHBE)的表达的双链核糖核酸(dsRNA)活性剂,其中所述dsRNA活性剂包含形成双链区的正义链和反义链,其中所述反义链从5’端起至少在第2-19位(例如2-20位或2-21位或全长)与INHBE基因的靶序列的相应部分完全互补,例如其中所述反义链的5’端的第一个核苷酸是A或U,例如U。In some embodiments, the present invention relates to a double-stranded RNA (dsRNA) activator for inhibiting the expression of repressin subunit βE (INHBE), wherein the dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the antisense strand is completely complementary to the corresponding portion of the target sequence of the INHBE gene at least from the 5' end at positions 2-19 (e.g., positions 2-20 or 2-21 or the full length), for example, wherein the first nucleotide at the 5' end of the antisense strand is A or U, such as U.
在一些实施方案中,本发明涉及一种用于抑制抑制素亚基βE(INHBE)表达的双链核糖核酸(dsRNA)活性剂,其中所述dsRNA活性剂包含形成双链体区的正义链和反义链,其中所述反义链与编码INHBE的mRNA至少一部分互补。在一些实施方案中,所述反义链与INHBE基因的靶序列在除5’端起算的第一个核苷之外的区域完全互补,其中所述反义链的5’端起算的第一个核苷酸是A或U,例如U。In some embodiments, the present invention relates to a double-stranded RNA (dsRNA) activator for inhibiting the expression of repressin subunit βE (INHBE), wherein the dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the antisense strand is at least partially complementary to the mRNA encoding INHBE. In some embodiments, the antisense strand is completely complementary to the target sequence of the INHBE gene in the region except for the first nucleotide from the 5' end, wherein the first nucleotide from the 5' end of the antisense strand is A or U, for example, U.
在一些实施方案中,本发明的dsRNA活性剂包含正义链和反义链,其中所述正义链包含19个核苷酸,所述反义链包含21个核苷酸,其中所述反义链相比正义链包含2个核苷酸的3’突出端,且其中所述正义链与反义链在19个核苷酸上完全互补,例如在19个连续核苷酸(例如在反义链从5’端起算的第1-19位连续核苷酸)上完全互补。In some embodiments, the dsRNA activator of the present invention comprises a sense strand and an antisense strand, wherein the sense strand comprises 19 nucleotides and the antisense strand comprises 21 nucleotides, wherein the antisense strand comprises a 3' overhang of 2 nucleotides compared to the sense strand, and wherein the sense strand and the antisense strand are completely complementary at 19 nucleotides, for example, at 19 consecutive nucleotides (e.g., at the 1st to 19th consecutive nucleotides of the antisense strand counting from the 5' end).
在一些实施方案中,本发明的dsRNA包含形成双链区的正义链和反义链,其中In some embodiments, the dsRNA of the present invention comprises a sense strand and an antisense strand forming a double-stranded region, wherein
(i)所述正义链包含或者为19个核苷酸,(i) The positive strand contains or is 19 nucleotides.
(ii)所述反义链包含或者为21个核苷酸,且与INHBE基因的靶序列在除5’端的第一个核苷酸之外的区域完全互补,其中所述反义链的5’端起算的第一个核苷酸是A或U,例如U;(ii) The antisense strand comprises or is 21 nucleotides and is completely complementary to the target sequence of the INHBE gene in the region except for the first nucleotide at the 5' end, wherein the first nucleotide from the 5' end of the antisense strand is A or U, for example U;
(iii)所述反义链相比正义链包含2个核苷酸的3’突出端,且其中所述正义链与反义链在19个连续核苷酸上完全互补,例如与反义链的5’端起算在1-19位的连续核苷酸上完全互补。(iii) The antisense strand contains a 3' overhang of 2 nucleotides compared to the sense strand, and the sense strand and the antisense strand are completely complementary over 19 consecutive nucleotides, for example, completely complementary over 1-19 consecutive nucleotides starting from the 5' end of the antisense strand.
在本发明的一个方面,本发明涉及一种用于抑制抑制素亚基βE(INHBE)的表达的双链核糖核酸(dsRNA)活性剂,其中所述dsRNA活性剂包含形成双链区的正义链和反义链,其中所述反义链包含与表1中的反义链核苷酸序列中的任一个反义链核苷酸序列相差不超过3、2或1个核苷酸的至少15、16、17、18、19、20或21个连续核苷酸,其中所述反义链在5’端第一个核苷酸为A或U,例如U。In one aspect of the invention, the invention relates to a double-stranded ribonucleic acid (dsRNA) activator for inhibiting the expression of repressin subunit βE (INHBE), wherein the dsRNA activator comprises a sense strand and an antisense strand forming a double-stranded region, wherein the antisense strand comprises at least 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides differing from any antisense strand nucleotide sequence in Table 1 by no more than 3, 2, or 1 nucleotide, wherein the first nucleotide at the 5' end of the antisense strand is A or U, for example, U.
在一些实施方案中,所述dsRNA活性剂包含正义链和反义链,所述正义链包含与表1中的正义链的核苷酸序列中的任一个核苷酸序列相差不超过3个核苷酸的至少15、16、17、18或19个连续核苷酸,所述反义链包含与表1中的反义链(例如对应于所述正义链(即与所述正义链在同一个siRNA名称下的反义链))的核苷酸序列中的任一个核苷酸序列相差不超过3个核苷酸的至少15、16、17、18、19、20或21个连续核苷酸,其中所述反义链在5’端第一个核苷酸为A或U,例如U。In some embodiments, the dsRNA activator comprises a sense strand and an antisense strand, the sense strand comprising at least 15, 16, 17, 18, or 19 consecutive nucleotides differing by no more than 3 nucleotides from any nucleotide sequence of the sense strand in Table 1, and the antisense strand comprising at least 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides differing by no more than 3 nucleotides from any nucleotide sequence of the antisense strand in Table 1 (e.g., the antisense strand corresponding to the sense strand (i.e., the antisense strand under the same siRNA name as the sense strand)), wherein the first nucleotide at the 5' end of the antisense strand is A or U, for example, U.
在一些实施方案中,所述dsRNA活性剂包含正义链和反义链,所述正义链包含与表1中的正义链的核苷酸序列中的任一个核苷酸序列相差不超过2个核苷酸的至少15、16、17、18或19个连续核苷酸,所述反义链(例如对应于所述正义链(即与所述正义链在同一个siRNA名称下的反义链))包含与表1中的反义链的核苷酸序列中的任一个核苷酸序列相差不超过2个核苷酸的至少15、16、17、18或19、20或21个连续核苷酸,其中所述反义链在5’端第一个核苷酸为A或U,例如U。In some embodiments, the dsRNA activator comprises a sense strand and an antisense strand, the sense strand comprising at least 15, 16, 17, 18, or 19 consecutive nucleotides differing by no more than 2 nucleotides from any nucleotide sequence of the sense strand in Table 1, and the antisense strand (e.g., corresponding to the sense strand (i.e., the antisense strand under the same siRNA name as the sense strand)) comprising at least 15, 16, 17, 18, or 19, 20, or 21 consecutive nucleotides differing by no more than 2 nucleotides from any nucleotide sequence of the antisense strand in Table 1, wherein the first nucleotide at the 5' end of the antisense strand is A or U, for example, U.
在一些实施方案中,所述dsRNA活性剂包含正义链和反义链,所述正义链包含与表1中的正义链的核苷酸序列中的任一个核苷酸序列相差不超过1个核苷酸的至少15、16、17、18或19个连续核苷酸,所述反义链(例如对应于所述正义链(即与所述正义链在同一个siRNA名称下的反义链))包含与表1中的反义链的核苷酸序列中的任一个核苷酸序列相差不超过1个核苷酸的至少15、16、17、18或19、20或21个连续核苷酸,其中所述反义链在5’端第一个核苷酸为A或U,例如U。In some embodiments, the dsRNA activator comprises a sense strand and an antisense strand, the sense strand comprising at least 15, 16, 17, 18, or 19 consecutive nucleotides differing by no more than one nucleotide from any nucleotide sequence of the sense strand in Table 1, and the antisense strand (e.g., corresponding to the sense strand (i.e., the antisense strand under the same siRNA name as the sense strand)) comprising at least 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides differing by no more than one nucleotide from any nucleotide sequence of the antisense strand in Table 1, wherein the first nucleotide at the 5' end of the antisense strand is A or U, for example, U.
在一些具体的实施方案中,所述正义链包含SEQ ID NO:1-110中任一项所示的核苷酸序列的至少15、16、17、18或19个连续的核苷酸的核苷酸序列。在一些具体的实施方案中,所述正义链与SEQ ID NO:1-110中任一项所示的核苷酸序列相差不超过1、2或3个核苷酸。在一些具体的实施方案中,所述正义链包含SEQ ID NO:1-110所示的核苷酸序列或由其组成。In some specific embodiments, the positive strand comprises a nucleotide sequence of at least 15, 16, 17, 18, or 19 consecutive nucleotides of the nucleotide sequence shown in any one of SEQ ID NO: 1-110. In some specific embodiments, the positive strand differs from the nucleotide sequence shown in any one of SEQ ID NO: 1-110 by no more than 1, 2, or 3 nucleotides. In some specific embodiments, the positive strand comprises or is composed of the nucleotide sequence shown in SEQ ID NO: 1-110.
在一些具体的实施方案中,所述反义链包含SEQ ID NO:111-220中任一项所示的核苷酸序列的至少15、16、17、18、19、20或21个连续的核苷酸的核苷酸序列。在一些具体的实施方案中,所述反义链与SEQ ID NO:111-220中任一项所示的核苷酸序列相差不超过1、2或3个核苷酸。在一些具体的实施方案中,所述反义链包含SEQ ID NO:111-220中任一项所示的核苷酸序列或由其组成。In some specific embodiments, the antisense strand comprises a nucleotide sequence of at least 15, 16, 17, 18, 19, 20, or 21 consecutive nucleotides of the nucleotide sequence shown in any one of SEQ ID NO: 111-220. In some specific embodiments, the antisense strand differs from the nucleotide sequence shown in any one of SEQ ID NO: 111-220 by no more than 1, 2, or 3 nucleotides. In some specific embodiments, the antisense strand comprises or consists of the nucleotide sequence shown in any one of SEQ ID NO: 111-220.
在一些实施方案中,所述dsRNA活性剂包含正义链和反义链,所述正义链包含选自由表1中的正义链的核苷酸序列中的任一个核苷酸序列的核苷酸序列,所述反义链包含选自由表1中的反义链(例如对应于所述正义链(即与所述正义链在同一个siRNA名称下的反义链))的核苷酸序列中的任一个核苷酸序列的核苷酸序列。In some embodiments, the dsRNA activator comprises a sense strand and an antisense strand, the sense strand comprising a nucleotide sequence selected from the nucleotide sequences of the sense strands in Table 1, and the antisense strand comprising a nucleotide sequence selected from the nucleotide sequences of the antisense strands in Table 1 (e.g., corresponding to the sense strand (i.e., the antisense strand under the same siRNA name as the sense strand)).
在一些实施方案中,所述dsRNA活性剂中的反义链和正义链的组合如表1中所示的反义链和正义链的任何组合所示。In some embodiments, the combination of the antisense and sense strands in the dsRNA activator is as shown in Table 1 for any combination of antisense and sense strands.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中所述正义链和反义链分别包含SEQ ID NO:1/111、SEQ ID NO:2/112、SEQ ID NO:3/113、SEQ ID NO:4/114、SEQ ID NO:5/115、SEQ ID NO:6/116、SEQ ID NO:7/117、SEQ ID NO:8/118、SEQ ID NO:9/119、SEQ ID NO:10/120、SEQ ID NO:11/121、SEQ ID NO:12/122、SEQ ID NO:13/123、SEQ ID NO:14/124、SEQ ID NO:15/125、SEQ ID NO:16/126、SEQ ID NO:17/127、SEQ ID NO:18/128、SEQ ID NO:19/129、SEQ ID NO:20/130、SEQ ID NO:21/131、SEQ ID NO:22/132、SEQ ID NO:23/133、SEQ ID NO:24/134、SEQ ID NO:25/135、SEQ ID NO:26/136、SEQ ID NO:27/137、SEQ ID NO:28/138、SEQ ID NO:29/139、SEQ ID NO:30/140、SEQ ID NO:31/141、SEQ ID NO:32/142、SEQ ID NO:33/143、SEQ ID NO:34/144、SEQ ID NO:35/145、SEQ ID NO:36/146、SEQ ID NO:37/147、SEQ ID NO:38/148、SEQ ID NO:39/149、SEQ ID NO:40/150、SEQ ID NO:41/151、SEQ ID NO:42/152、SEQ ID NO:43/153、SEQ ID NO:44/154、SEQ ID NO:45/155、SEQ ID NO:46/156、SEQ ID NO:47/157、SEQ ID NO:48/158、SEQ ID NO:49/159、SEQ ID NO:50/160、SEQ ID NO:51/161、SEQ ID NO:52/162、SEQ ID NO:53/163、SEQ ID NO:54/164、SEQ ID NO:55/165、SEQ ID NO:56/166、SEQ ID NO:57/167、SEQ ID NO:58/168、SEQ ID NO:59/169、SEQ ID NO:60/170、SEQ ID NO:61/171、SEQ ID NO:62/172、SEQ ID NO:63/173、SEQ ID NO:64/174、SEQ ID NO:65/175、SEQ ID NO:66/176、SEQ ID NO:67/177、SEQ ID NO:68/178、SEQ ID NO:69/179、SEQ ID NO:70/180、SEQ ID NO:71/181、SEQ ID NO:72/182、SEQ ID NO:73/183、SEQ ID NO:74/184、SEQ ID NO:75/185、SEQ ID NO:76/186、SEQ ID NO:77/187、SEQ ID NO:78/188、SEQ ID NO:79/189、SEQ ID NO:80/190、SEQ ID NO:81/191、SEQ ID NO:82/192、SEQ ID NO:83/193、SEQ ID NO:84/194、SEQ ID NO:85/195、SEQ ID NO:86/196、SEQ ID NO:87/197、SEQ ID NO:88/198、SEQ ID NO:89/199、SEQ ID NO:90/200、SEQ ID NO:91/201、SEQ ID NO:92/202、SEQ ID NO:93/203、SEQ ID NO:94/204、SEQ ID NO:95/205、SEQ ID NO:96/206、SEQ ID NO:97/207、SEQ ID NO:98/208、SEQ ID NO:99/209、SEQ ID NO:100/210、SEQ ID NO:101/211、SEQ ID NO:102/212、SEQ ID NO:103/213、SEQ ID NO:104/214、SEQ ID NO:105/215、SEQ ID NO:106/216、SEQ ID NO:107/217、SEQ ID NO:108/218、SEQ ID NO:109/219、SEQ ID NO:110/220所示的核苷酸序列中的至少15、16、17、18或19个连续的核苷酸,任选地所述反义链还具有1或2个核苷酸的3’突出端,任选地所述反义链在5’端第一个核苷酸为A或U,例如U。In some specific embodiments, the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and the antisense strand respectively comprise SEQ ID NO:1/111, SEQ ID NO:2/112, SEQ ID NO:3/113, SEQ ID NO:4/114, SEQ ID NO:5/115, SEQ ID NO:6/116, SEQ ID NO:7/117, SEQ ID NO:8/118, SEQ ID NO:9/119, SEQ ID NO:10/120, SEQ ID NO:11/121, SEQ ID NO:12/122, SEQ ID NO:N O:13/123、SEQ ID NO:14/124、SEQ ID NO:15/125、SEQ ID NO:16/126、SEQ ID NO:17/127、SEQ ID NO:18/128、SEQ ID NO:19/129、SEQ ID NO:20/1 30. SEQ ID NO:21/131, SEQ ID NO:22/132, SEQ ID NO:23/133, SEQ ID NO:24/134, SEQ ID NO:25/135, SEQ ID NO:26/136, SEQ ID NO:27/137, SEQ ID NO:28/138、SEQ ID NO:29/139、SEQ ID NO:30/140、SEQ ID NO:31/141、SEQ ID NO:32/142、SEQ ID NO:33/143、SEQ ID NO:34/144、SEQ ID NO: 35/145、SEQ ID NO:36/146、SEQ ID NO:37/147、SEQ ID NO:38/148、SEQ ID NO:39/149、SEQ ID NO:40/150、SEQ ID NO:41/151、SEQ ID NO:42/152 , SEQ ID NO:43/153, SEQ ID NO:44/154, SEQ ID NO:45/155, SEQ ID NO:46/156, SEQ ID NO:47/157, SEQ ID NO:48/158, SEQ ID NO:49/159, SEQ I D NO:50/160、SEQ ID NO:51/161、SEQ ID NO:52/162、SEQ ID NO:53/163、SEQ ID NO:54/164、SEQ ID NO:55/165、SEQ ID NO:56/166、SEQ ID NO:57 /167、SEQ ID NO:58/168、SEQ ID NO:59/169、SEQ ID NO:60/170、SEQ ID NO:61/171、SEQ ID NO:62/172、SEQ ID NO:63/173、SEQ ID NO:64/174、S EQ ID NO:65/175、SEQ ID NO:66/176、SEQ ID NO:67/177、SEQ ID NO:68/178、SEQ ID NO:69/179、SEQ ID NO:70/180、SEQ ID NO:71/181、SEQ ID NO:72/182、SEQ ID NO:73/183、SEQ ID NO:74/184、SEQ ID NO:75/185、SEQ ID NO:76/186、SEQ ID NO:77/187、SEQ ID NO:78/188、SEQ ID NO:79/ 189. SEQ ID NO:80/190, SEQ ID NO:81/191, SEQ ID NO:82/192, SEQ ID NO:83/193, SEQ ID NO:84/194, SEQ ID NO:85/195, SEQ ID NO:86/196, SEQ ID NO:87/197、SEQ ID NO:88/198、SEQ ID NO:89/199、SEQ ID NO:90/200、SEQ ID NO:91/201、SEQ ID NO:92/202、SEQ ID NO:93/203、SEQ ID NO :94/204、SEQ ID NO:95/205、SEQ ID NO:96/206、SEQ ID NO:97/207、SEQ ID NO:98/208、SEQ ID NO:99/209、SEQ ID NO:100/210、SEQ ID NO:101/ The antisense strand comprises at least 15, 16, 17, 18, or 19 consecutive nucleotides in the nucleotide sequences shown in SEQ ID NO:102/212, SEQ ID NO:103/213, SEQ ID NO:104/214, SEQ ID NO:105/215, SEQ ID NO:106/216, SEQ ID NO:107/217, SEQ ID NO:108/218, SEQ ID NO:109/219, and SEQ ID NO:110/220, optionally having a 3' overhang of 1 or 2 nucleotides, optionally having the first nucleotide at the 5' end of the antisense strand being A or U, for example, U.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中所述正义链和反义链分别包含SEQ ID NO:1/111、SEQ ID NO:2/112、SEQ ID NO:3/113、SEQ ID NO:4/114、SEQ ID NO:5/115、SEQ ID NO:6/116、SEQ ID NO:7/117、SEQ ID NO:8/118、SEQ ID NO:9/119、SEQ ID NO:10/120、SEQ ID NO:11/121、SEQ ID NO:12/122、SEQ ID NO:13/123、SEQ ID NO:14/124、SEQ ID NO:15/125、SEQ ID NO:16/126、SEQ ID NO:17/127、SEQ ID NO:18/128、SEQ ID NO:19/129、SEQ ID NO:20/130、SEQ ID NO:21/131、SEQ ID NO:22/132、SEQ ID NO:23/133、SEQ ID NO:24/134、SEQ ID NO:25/135、SEQ ID NO:26/136、SEQ ID NO:27/137、SEQ ID NO:28/138、SEQ ID NO:29/139、SEQ ID NO:30/140、SEQ ID NO:31/141、SEQ ID NO:32/142、SEQ ID NO:33/143、SEQ ID NO:34/144、SEQ ID NO:35/145、SEQ ID NO:36/146、SEQ ID NO:37/147、SEQ ID NO:38/148、SEQ ID NO:39/149、SEQ ID NO:40/150、SEQ ID NO:41/151、SEQ ID NO:42/152、SEQ ID NO:43/153、SEQ ID NO:44/154、SEQ ID NO:45/155、SEQ ID NO:46/156、SEQ ID NO:47/157、SEQ ID NO:48/158、SEQ ID NO:49/159、SEQ ID NO:50/160、SEQ ID NO:51/161、SEQ ID NO:52/162、SEQ ID NO:53/163、SEQ ID NO:54/164、SEQ ID NO:55/165、SEQ ID NO:56/166、SEQ ID NO:57/167、SEQ ID NO:58/168、SEQ ID NO:59/169、SEQ ID NO:60/170、SEQ ID NO:61/171、SEQ ID NO:62/172、SEQ ID NO:63/173、SEQ ID NO:64/174、SEQ ID NO:65/175、SEQ ID NO:66/176、SEQ ID NO:67/177、SEQ ID NO:68/178、SEQ ID NO:69/179、SEQ ID NO:70/180、SEQ ID NO:71/181、SEQ ID NO:72/182、SEQ ID NO:73/183、SEQ ID NO:74/184、SEQ ID NO:75/185、SEQ ID NO:76/186、SEQ ID NO:77/187、SEQ ID NO:78/188、SEQ ID NO:79/189、SEQ ID NO:80/190、SEQ ID NO:81/191、SEQ ID NO:82/192、SEQ ID NO:83/193、SEQ ID NO:84/194、SEQ ID NO:85/195、SEQ ID NO:86/196、SEQ ID NO:87/197、SEQ ID NO:88/198、SEQ ID NO:89/199、SEQ ID NO:90/200、SEQ ID NO:91/201、SEQ ID NO:92/202、SEQ ID NO:93/203、SEQ ID NO:94/204、SEQ ID NO:95/205、SEQ ID NO:96/206、SEQ ID NO:97/207、SEQ ID NO:98/208、SEQ ID NO:99/209、SEQ ID NO:100/210、SEQ ID NO:101/211、SEQ ID NO:102/212、SEQ ID NO:103/213、SEQ ID NO:104/214、SEQ ID NO:105/215、SEQ ID NO:106/216、SEQ ID NO:107/217、SEQ ID NO:108/218、SEQ ID NO:109/219、SEQ ID NO:110/220所示的核苷酸序列或分别由所示的核苷酸序列组成。In some specific embodiments, the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and the antisense strand respectively comprise SEQ ID NO:1/111, SEQ ID NO:2/112, SEQ ID NO:3/113, SEQ ID NO:4/114, SEQ ID NO:5/115, SEQ ID NO:6/116, SEQ ID NO:7/117, SEQ ID NO:8/118, SEQ ID NO:9/119, SEQ ID NO:10/120, SEQ ID NO:11/121, and SEQ ID NO:12/122. SEQ ID NO:13/123、SEQ ID NO:14/124、SEQ ID NO:15/125、SEQ ID NO:16/126、SEQ ID NO:17/127、SEQ ID NO:18/128、SEQ ID NO:19/129、SE Q ID NO:20/130、SEQ ID NO:21/131、SEQ ID NO:22/132、SEQ ID NO:23/133、SEQ ID NO:24/134、SEQ ID NO:25/135、SEQ ID NO:26/136、SEQ I D NO:27/137、SEQ ID NO:28/138、SEQ ID NO:29/139、SEQ ID NO:30/140、SEQ ID NO:31/141、SEQ ID NO:32/142、SEQ ID NO:33/143、SEQ ID NO:34/144、SEQ ID NO:35/145、SEQ ID NO:36/146、SEQ ID NO:37/147、SEQ ID NO:38/148、SEQ ID NO:39/149、SEQ ID NO:40/150、SEQ ID NO :41/151、SEQ ID NO:42/152、SEQ ID NO:43/153、SEQ ID NO:44/154、SEQ ID NO:45/155、SEQ ID NO:46/156、SEQ ID NO:47/157、SEQ ID NO:4 8/158、SEQ ID NO:49/159、SEQ ID NO:50/160、SEQ ID NO:51/161、SEQ ID NO:52/162、SEQ ID NO:53/163、SEQ ID NO:54/164、SEQ ID NO:55/1 65. SEQ ID NO:56/166, SEQ ID NO:57/167, SEQ ID NO:58/168, SEQ ID NO:59/169, SEQ ID NO:60/170, SEQ ID NO:61/171, SEQ ID NO:62/172 , SEQ ID NO:63/173, SEQ ID NO:64/174, SEQ ID NO:65/175, SEQ ID NO:66/176, SEQ ID NO:67/177, SEQ ID NO:68/178, SEQ ID NO:69/179, S EQ ID NO:70/180、SEQ ID NO:71/181、SEQ ID NO:72/182、SEQ ID NO:73/183、SEQ ID NO:74/184、SEQ ID NO:75/185、SEQ ID NO:76/186、SEQ ID NO:77/187、SEQ ID NO:78/188、SEQ ID NO:79/189、SEQ ID NO:80/190、SEQ ID NO:81/191、SEQ ID NO:82/192、SEQ ID NO:83/193、SEQ ID NO:84/194、SEQ ID NO:85/195、SEQ ID NO:86/196、SEQ ID NO:87/197、SEQ ID NO:88/198、SEQ ID NO:89/199、SEQ ID NO:90/200、SEQ ID N O:91/201、SEQ ID NO:92/202、SEQ ID NO:93/203、SEQ ID NO:94/204、SEQ ID NO:95/205、SEQ ID NO:96/206、SEQ ID NO:97/207、SEQ ID NO:9 The nucleotide sequences shown in SEQ ID NO: 8/208, SEQ ID NO: 99/209, SEQ ID NO: 100/210, SEQ ID NO: 101/211, SEQ ID NO: 102/212, SEQ ID NO: 103/213, SEQ ID NO: 104/214, SEQ ID NO: 105/215, SEQ ID NO: 106/216, SEQ ID NO: 107/217, SEQ ID NO: 108/218, SEQ ID NO: 109/219, and SEQ ID NO: 110/220, or each of the nucleotide sequences shown.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中In some specific embodiments, the dsRNA activator comprises a sense strand and an antisense strand, wherein
所述正义链包含SEQ ID NO:60所示的核苷酸序列或由其组成,且所述反义链包含SEQ ID NO:170所示的核苷酸序列或由其组成;或The sense strand comprises or is composed of the nucleotide sequence shown in SEQ ID NO:60, and the antisense strand comprises or is composed of the nucleotide sequence shown in SEQ ID NO:170; or
所述正义链包含SEQ ID NO:101所示的核苷酸序列或由其组成,且所述反义链包含SEQ ID NO:211所示的核苷酸序列或由其组成。The sense strand contains or is composed of the nucleotide sequence shown in SEQ ID NO:101, and the antisense strand contains or is composed of the nucleotide sequence shown in SEQ ID NO:211.
对于抑制靶mRNA表达目的,如本领域技术人员知晓,用作正义链的寡核苷酸并不参与直接和靶序列互补结合,并且无需与反义链寡核苷酸在双链体区中具有完全互补的碱基配对。因此,在一些方面,根据本发明的正义链(过客链)可以包括至少一个或多个下列性质:在与反义链的杂交双链体区中,与反义链的连续核苷酸基本互补,例如至少70%互补、至少80%互补、至少90%互补,或100%互补;在杂交双链体区中,相对于反义链的连续核苷酸,具有形成凸起或环的1个或多个额外核苷酸;在杂交双链体区中,相对于反义链的连续核苷酸,存在1个或多个核苷酸的缺口或空位。同样地,对于抑制靶mRNA表达目的,如本领域技术人员明了的,作为指导RNAi与目标靶mRNA特异性结合的反义链,也可以包含与靶序列的连续核苷酸区域并非100%互补的序列,例如该互补性可以为至少80%互补,至少90%互补或95%互补;但在一些情况下,100%互补是更优选的。根据本发明的目的,在一些方面,在考虑反义链的序列基序与靶序列的连续核苷酸互补时,优选地,不允许插入和缺失的存在。就本发明的正义链和反义链而言,在一些方面中,当互补的区域与所述的连续核苷酸区域不完全互补时,错配可以位于该区域的内部或末端,例如,位于5’和/或3’末端的3、2或1个核苷酸的错配。在优选的实施方案中,反义链与正义链在至少18个连续核苷酸上互补。在优选的实施方案中,所述反义链与正义链在19个连续核苷酸(例如从反义链5’端起算的第1-19位连续核苷酸)上互补,例如完全互补。For the purpose of inhibiting target mRNA expression, as those skilled in the art know, the oligonucleotide used as the sense strand does not participate in direct complementary binding to the target sequence, and does not need to have perfectly complementary base pairing with the antisense oligonucleotide in the duplex region. Therefore, in some aspects, the sense strand (passenger strand) according to the invention may include at least one or more of the following properties: substantially complementary to the consecutive nucleotides of the antisense strand in the duplex region with the antisense strand, for example, at least 70%, at least 80%, at least 90%, or 100% complementary; having one or more additional nucleotides forming a protrusion or loop relative to the consecutive nucleotides of the antisense strand in the duplex region; and having one or more nucleotide gaps or vacancies relative to the consecutive nucleotides of the antisense strand in the duplex region. Similarly, for the purpose of inhibiting target mRNA expression, as those skilled in the art will understand, the antisense strand, serving as a guide RNAi for the specific binding of the target mRNA, may also contain sequences that are not 100% complementary to the consecutive nucleotide regions of the target sequence; for example, the complementarity may be at least 80%, at least 90%, or 95% complementary; however, in some cases, 100% complementarity is preferred. According to the purpose of the invention, in some aspects, when considering the sequence motif of the antisense strand to be complementary to the consecutive nucleotide regions of the target sequence, the presence of insertions and deletions is preferably not permitted. With regard to the sense and antisense strands of the invention, in some aspects, when the complementary region is not perfectly complementary to the said consecutive nucleotide region, the mismatch may be located inside or at the end of that region, for example, a mismatch of 3, 2, or 1 nucleotides at the 5' and/or 3' ends. In a preferred embodiment, the antisense strand is complementary to the sense strand over at least 18 consecutive nucleotides. In a preferred embodiment, the antisense strand is complementary to the sense strand over 19 consecutive nucleotides (e.g., consecutive nucleotides 1-19 from the 5' end of the antisense strand), for example, perfectly complementary.
在一些实施方案中,所述dsRNA活性剂以盐、混合盐或游离酸的形式制备或提供。在一些实施方案中,所述dsRNA活性剂制备为钠盐。此类形式在本文所公开的发明的范围内。In some embodiments, the dsRNA activator is prepared or provided in the form of a salt, a mixed salt, or a free acid. In some embodiments, the dsRNA activator is prepared as a sodium salt. Such forms are within the scope of the invention disclosed herein.
本领域技术人员将认识到,根据本发明的dsRNA分子可以是未修饰的(即,包含自然界中天然的RNA核苷),但也可以是(且优选是)修饰的,只要其保持期望的功能活性(即,能够形成所需的双链体结构并且允许或介导经由RISC途径对靶RNA的特异性降解)即可。这样的RNA修饰可以发生在核苷酸的碱基部分、糖部分和/或磷酸酯连接部分。作为一个非限制性的例子,可使用本领域已知的方案,使用化学合成和酶促连接反应,来构建修饰的RNAi活性剂。例如,可使用天然存在的核苷酸或经多种修饰的核苷酸(设计来减少脱靶效果,和/或增加分子的生物稳定性,或增加反义和正义核酸之间形成的双链体的物理稳定性),来化学合成修饰的RNAi活性剂。Those skilled in the art will recognize that the dsRNA molecule according to the invention can be unmodified (i.e., containing naturally occurring RNA nucleosides), but can also be (and preferably) modified, as long as it retains the desired functional activity (i.e., capable of forming the desired double-stranded structure and allowing or mediating specific degradation of the target RNA via the RISC pathway). Such RNA modification can occur at the base moiety, sugar moiety, and/or phosphate ester linker of the nucleotide. As a non-limiting example, modified RNAi activators can be constructed using methods known in the art, employing chemical synthesis and enzymatic ligation reactions. For example, modified RNAi activators can be chemically synthesized using naturally occurring nucleotides or nucleotides with various modifications (designed to reduce off-target effects and/or increase the biological stability of the molecule, or increase the physical stability of the double-stranded structure formed between antisense and sense nucleic acids).
在一些实施方案中,本发明的dsRNA活性剂的至少一个核苷酸是经修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂中,所述正义链的基本上所有核苷酸都是经修饰的核苷酸;或所述反义链的基本上所有核苷酸都是经修饰的核苷酸;或者所述正义链的基本上所有核苷酸和所述反义链的基本上所有核苷酸都是经修饰的核苷酸。In some embodiments, at least one nucleotide of the dsRNA activator of the present invention is a modified nucleotide. In some embodiments, in the dsRNA activator of the present invention, substantially all nucleotides of the sense strand are modified nucleotides; or substantially all nucleotides of the antisense strand are modified nucleotides; or substantially all nucleotides of both the sense strand and the antisense strand are modified nucleotides.
在一些实施方案中,dsRNA活性剂包含一种或多种经修饰的核苷酸。如本文所用,“经修饰的核苷酸”为除核糖核苷酸(2’-羟基核苷酸)之外的核苷酸。在一些实施方案中,至少50%(例如,至少60%、至少70%、至少80%、至少90%、至少95%、至少97%、至少98%、至少99%、或100%)的核苷酸为经修饰的核苷酸。In some embodiments, the dsRNA activator comprises one or more modified nucleotides. As used herein, a “modified nucleotide” is a nucleotide other than a ribonucleotide (2’-hydroxynucleotide). In some embodiments, at least 50% (e.g., at least 60%, at least 70%, at least 80%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100%) of the nucleotides are modified nucleotides.
在一些实施方案中,本发明的dsRNA活性剂的全部或基本上所有核苷酸为经修饰的核苷酸。如本文所述的,基本上所有核苷酸均为经修饰的核苷酸的dsRNA活性剂是指在正义链和反义链中具有的共计4个或更少(即0、1、2、3或4)个核苷酸为天然核糖核苷酸的dsRNA活性剂。如本文所用,基本上所有核苷酸均为经修饰的核苷酸的正义链是指在正义链中具有的2个或更少(即0、1或2)个核苷酸为天然核糖核苷酸的正义链。如本文所用,基本上所有核苷酸均为经修饰的核苷酸的反义链是指在反义链中具有2个或更少(即0、1或2)个核苷酸为天然核糖核苷酸的反义链。In some embodiments, all or substantially all nucleotides of the dsRNA activator of the present invention are modified nucleotides. As described herein, a dsRNA activator in which substantially all nucleotides are modified nucleotides refers to a dsRNA activator having a total of 4 or fewer (i.e., 0, 1, 2, 3, or 4) nucleotides that are native ribonucleotides in both the sense and antisense strands. As used herein, a sense strand in which substantially all nucleotides are modified nucleotides refers to a sense strand in which 2 or fewer (i.e., 0, 1, or 2) nucleotides are native ribonucleotides in the sense strand. As used herein, an antisense strand in which substantially all nucleotides are modified nucleotides refers to an antisense strand in which 2 or fewer (i.e., 0, 1, or 2) nucleotides are native ribonucleotides in the antisense strand.
在一些实施方案中,dsRNA活性剂中正义链的所有核苷酸都是经修饰的核苷酸和/或所述反义链的所有核苷酸都是经修饰的核苷酸;或者所述正义链的所有核苷酸和所述反义链的所有核苷酸都是经修饰的核苷酸。In some embodiments, all nucleotides in the sense strand of the dsRNA activator are modified nucleotides and/or all nucleotides in the antisense strand are modified nucleotides; or all nucleotides in both the sense strand and the antisense strand are modified nucleotides.
在一些实施方案中,适用于本发明的dsRNA活性剂的核苷酸修饰涵盖对核苷碱基的修饰、核糖部分的修饰和/或磷酸骨架的修饰。示例性的修饰可以参见PCT公开WO 200370918中找到本领域已知的一些寡核苷酸修饰,其在本文中按照参考全文引入。In some embodiments, nucleotide modifications suitable for the dsRNA activator of the present invention encompass modifications to nucleoside bases, ribose moieties, and/or the phosphate backbone. Exemplary modifications can be found in PCT Publication WO 200370918, which is incorporated herein by reference in its entirety.
可用于产生dsRNA活性剂的核苷碱基修饰例子包括,含有尿嘧啶、鸟嘌呤或腺嘌呤的核苷酸可被含有例如肌苷的核苷酸置换;以及寡核苷酸中的腺嘌呤和胞嘧啶可被鸟嘌呤和尿嘧啶分别替换,以与靶mRNA形成G-U Wobble碱基配对。此外,可用于产生RNAi活性剂的经修饰的核苷碱基的其他例子包括,但不限于:5-氟尿嘧啶、5-溴尿嘧啶、5-氯尿嘧啶、5-碘尿嘧啶、次黄嘌呤、黄嘌呤(xantine)、4-乙酰基胞嘧啶、5-(羧基羟基甲基)尿嘧啶、5-羧基甲基氨基甲基-2-硫尿苷、5-羧基甲基氨基甲基尿嘧啶、二氢尿嘧啶、β-D-半乳糖基Q核苷(β-D-galactosylqueosine)、肌苷、N6-异戊烯基腺嘌呤、1-甲基鸟嘌呤、1-甲基肌苷、2,2-二甲基鸟嘌呤、2-甲基腺嘌呤、2-甲基鸟嘌呤、3-甲基胞嘧啶、5-甲基胞嘧啶、N6-腺嘌呤、7-甲基鸟嘌呤、5-甲基氨基甲基尿嘧啶、5-甲氧基氨基甲基-2-硫代尿嘧啶、β-D-甘露糖基Q核苷、5'-甲氧基羧基甲基尿嘧啶、5-甲氧基尿嘧啶、2-甲基硫代-N6-异戊烯基腺嘌呤、尿嘧啶-5-羟乙酸(v)、wybutoxosine、假尿嘧啶、Q核苷(queosine)、2-硫代胞嘧啶、5-甲基-2-硫代尿嘧啶、2-硫代尿嘧啶、4-硫代尿嘧啶、5-甲基尿嘧啶、尿嘧啶-5-羟乙酸甲基酯、尿嘧啶-5-羟乙酸(v)、5-甲基-2-硫代尿嘧啶、3-(3-氨基-3-N-2-羧基丙基)尿嘧啶、(acp3)w和2,6-二氨基嘌呤。这些修饰的核苷碱基均在本发明的考虑之列。Examples of nucleoside base modifications that can be used to generate dsRNA activators include the substitution of nucleotides containing uracil, guanine, or adenine with nucleotides containing, for example, inosine; and the substitution of adenine and cytosine in oligonucleotides with guanine and uracil, respectively, to form G-U Wobble base pairing with the target mRNA. In addition, other examples of modified nucleoside bases that can be used to generate RNAi activators include, but are not limited to: 5-fluorouracil, 5-bromouracil, 5-chlorouracil, 5-iodouracil, hypoxanthine, xantine, 4-acetylcytosine, 5-(carboxyhydroxymethyl)uracil, 5-carboxymethylaminomethyl-2-thiouracil, 5-carboxymethylaminomethyluracil, dihydrouracil, β-D-galactosylqueosine, inosine, N6-isopentenyladenine, 1-methylguanine, 1-methylinosine, 2,2-dimethylguanine, 2-methyladenine, 2-methylguanine, 3-methylcytosine, 5-methylcytosine, N6-adenine, 7 -Methylguanine, 5-methylaminomethyluracil, 5-methoxyaminomethyl-2-thiouracil, β-D-mannosyl queosine, 5'-methoxycarboxymethyluracil, 5-methoxyuracil, 2-methylthio-N6-isopentenyladenine, uracil-5-hydroxyacetic acid (v), wybutoxosine, pseudouracil, queosine, 2-thiocytosine, 5-methyl-2-thiouracil, 2-thiouracil, 4-thiouracil, 5-methyluracil, uracil-5-hydroxyacetic acid methyl ester, uracil-5-hydroxyacetic acid (v), 5-methyl-2-thiouracil, 3-(3-amino-3-N-2-carboxypropyl)uracil, (acp3)w, and 2,6-diaminopurine. These modified nucleoside bases are all within the scope of this invention.
可用于产生dsRNA活性剂的核糖部分修饰的例子包括例如通过用以下之一者替换而修饰的核糖环结构:己糖环(HNA)、苏糖环(TNA)、锁核酸(LNA,在核糖环上C2和C4碳之间具有双基桥的双环状环)、或非锁核酸(UNA,在C2碳和C3碳之间缺少键连接的核糖环)。可用的糖修饰的核苷的例子还包括例如,双环己糖核酸(WO 2011/017521)或三环核酸(WO 2013/154798)。修饰的核苷还包括其中糖部分由非糖部分替换的核苷,例如在肽核酸(PNA)或吗啉代核酸的情况下。糖修饰还包括通过将RNA核苷的核糖环上天然存在的2’-OH基团替代为其他基团的修饰。此外,可以例如在糖环的2’、3’、4’或5’位置引入取代基。Examples of ribosome modifications that can be used to generate dsRNA active agents include ribosome structures modified by replacing one of the following: a hexose ring (HNA), a threonose ring (TNA), locked nucleic acid (LNA, a bicyclic ring with a bimolecular bridge between the C2 and C4 carbons on the ribosome), or a non-locked nucleic acid (UNA, a ribosome lacking a bond between the C2 and C3 carbons). Examples of usable sugar-modified nucleosides also include, for example, bicyclic hexose nucleic acids (WO 2011/017521) or tricyclic nucleic acids (WO 2013/154798). Modified nucleosides also include nucleosides in which the sugar portion is replaced by a non-sugar portion, such as in the case of peptide nucleic acids (PNA) or morpholino nucleic acids. Sugar modification also includes modifications by replacing the naturally occurring 2'-OH group on the ribosome ring of the RNA nucleoside with other groups. Furthermore, substituents can be introduced, for example, at the 2', 3', 4', or 5' positions of the sugar ring.
在一些实施方案中,本发明的dsRNA活性剂可以包含2’糖修饰的核苷酸,例如2’取代的核苷。2’取代的修饰的核苷实例是2’-O-烷基-RNA核苷、2'-O-甲基-RNA核苷、2’-烷氧基-RNA核苷、2’-O-甲氧乙基-RNA核苷(MOE)、2’-氨基-DNA核苷、2'-氟-RNA核苷和2’-F-ANA核苷。其他实例可以例如见于Freier和Altmann;Nucl.Acid Res.,1997,25,4429-4443和Uhlmann;Curr.Opinion in Drug Development,2000,3(2),293-213及Deleavey和Damha,Chemistry and Biology 2012,19,937中。在一些实施方案中,根据本发明的RNAi活性剂包含至少一个2’-修饰的核苷酸。在一些实施方案中,所述2’-修饰选自2'-脱氧、2’-氟代、2’-O-甲基、2'-O-甲氧基乙基(2'-O-MOE)、2'-O-烯丙基、2'-O-氨基丙基(2'-O-AP)、2'-O-二甲基氨基乙基(2'-O-DMAOE)、2'-O-二甲基氨基丙基(2'-O-DMAP)、2'-O-二甲基氨基乙氧基乙基(2'-O-DMAEOE)和2'-O-N-甲基乙酰氨基(2'-O-NMA)。在一些实施方案中,根据本发明的RNAi活性剂包含至少一个选自以下的2’-修饰的核苷:2’-O-烷基-RNA核苷、2'-O-甲基-RNA核苷、2’-烷氧基-RNA核苷、2’-O-甲氧乙基-RNA核苷(MOE)、2’-氨基-DNA核苷、2'-氟-RNA核苷和2’-F-ANA核苷。In some embodiments, the dsRNA activator of the present invention may comprise a 2'-sugar-modified nucleotide, such as a 2'-substituted nucleoside. Examples of 2'-substituted modified nucleosides are 2'-O-alkyl-RNA nucleoside, 2'-O-methyl-RNA nucleoside, 2'-alkoxy-RNA nucleoside, 2'-O-methoxyethyl-RNA nucleoside (MOE), 2'-amino-DNA nucleoside, 2'-fluoro-RNA nucleoside, and 2'-F-ANA nucleoside. Other examples may be found, for example, in Freier and Altmann; Nucl. Acid Res., 1997, 25, 4429-4443 and Uhlmann; Curr. Opinion in Drug Development, 2000, 3(2), 293-213 and Deleavey and Damha, Chemistry and Biology 2012, 19, 937. In some embodiments, the RNAi activator according to the present invention comprises at least one 2'-modified nucleotide. In some embodiments, the 2'-modification is selected from 2'-deoxy, 2'-fluorinated, 2'-O-methyl, 2'-O-methoxyethyl (2'-O-MOE), 2'-O-allyl, 2'-O-aminopropyl (2'-O-AP), 2'-O-dimethylaminoethyl (2'-O-DMAOE), 2'-O-dimethylaminopropyl (2'-O-DMAP), 2'-O-dimethylaminoethoxyethyl (2'-O-DMAEOE), and 2'-O-N-methylacetamido (2'-O-NMA). In some embodiments, the RNAi activator according to the invention comprises at least one 2'-modified nucleoside selected from the following: 2'-O-alkyl-RNA nucleoside, 2'-O-methyl-RNA nucleoside, 2'-alkoxy-RNA nucleoside, 2'-O-methoxyethyl-RNA nucleoside (MOE), 2'-amino-DNA nucleoside, 2'-fluoro-RNA nucleoside and 2'-F-ANA nucleoside.
在一些实施方案中,根据本发明的dsRNA活性剂还可以任选地包含5’和/或3’末端的化学修饰,即,与RNAi的寡核苷酸链(正义链和/或反义链)的末端连接的非核苷酸或核苷的化学部分。连接在寡核苷酸链的3’端的化学部分的例子可以参见例如WO 2005/021749和WO 2007/128477中公开的。连接在寡核苷酸链的5’端的化学部分的例子可以包括,但不限于,5’末端的磷酸酯修饰,例如5’-(E)-乙烯基膦酸酯(5’-(E)-VP)、5’-甲基膦酸酯(5’-MP)、(S)-5’-C-甲基类似物和5’-硫代磷酸酯(5’-PS)。In some embodiments, the dsRNA activator according to the invention may optionally also comprise a chemical modification at the 5' and/or 3' ends, i.e., a non-nucleotide or nucleoside chemical moiety linked to the end of the oligonucleotide chain (sense and/or antisense strand) of RNAi. Examples of chemical moieties linked to the 3' end of the oligonucleotide chain can be found, for example, in WO 2005/021749 and WO 2007/128477. Examples of chemical moieties linked to the 5' end of the oligonucleotide chain may include, but are not limited to, 5'-terminal phosphate ester modifications, such as 5'-(E)-vinylphosphonate (5'-(E)-VP), 5'-methylphosphonate (5'-MP), (S)-5'-C-methyl analogues, and 5'-thiophosphate (5'-PS).
在一些实施方案中,所述经修饰的核苷酸中的至少一种经修饰的核苷酸选自由以下组成的组:脱氧核苷酸、3’末端脱氧胸苷(dT)核苷酸、2’-O-甲基修饰的核苷酸、2’-氟修饰的核苷酸、2’-脱氧修饰的核苷酸、锁核苷酸、2’-5’-连接核糖核苷酸(3’-RNA)、解锁核苷酸、构象限制性核苷酸、约束乙基核苷酸、无碱基核苷酸、2’-氨基修饰的核苷酸、2’-O-烯丙基修饰的核苷酸、2’-C-烷基修饰的核苷酸、、2’-甲氧基乙基修饰的核苷酸、2’-O-烷基修饰的核苷酸、吗啉代核苷酸、氨基磷酸酯、包括非天然碱基的核苷酸、四氢吡喃修饰的核苷酸、1,5-脱水己糖醇修饰的核苷酸、环己烯基修饰的核苷酸、包括硫代磷酸酯基的核苷酸(例如包含5’硫代磷酸基团的核苷)、包括甲基膦酸酯基的核苷酸、包括5’-磷酸酯的核苷酸、包括5’-磷酸酯模拟物的核苷酸、乙烯基-膦酸酯核苷酸、热不稳定核苷酸、乙二醇修饰的核苷酸(GNA)、包括2’磷酸酯的核苷酸和2-O-(N-甲基乙酰胺)修饰的核苷酸;以及其组合。In some embodiments, at least one of the modified nucleotides is selected from the group consisting of: deoxynucleotides, 3'-terminal deoxythymidine (dT) nucleotides, 2'-O-methyl modified nucleotides, 2'-fluorine modified nucleotides, 2'-deoxy modified nucleotides, locked nucleotides, 2'-5'-linked ribonucleotides (3'-RNA), unlocked nucleotides, conformation-restricted nucleotides, restricted ethyl nucleotides, base-free nucleotides, 2'-amino modified nucleotides, 2'-O-allyl modified nucleotides, 2'-C-alkyl modified nucleotides, 2'-methoxyethyl modified nucleotides, 2'- O-alkyl modified nucleotides, morpholinonucleotides, aminophosphates, nucleotides including non-natural bases, tetrahydropyran modified nucleotides, 1,5-dehydrohexyl modified nucleotides, cyclohexenyl modified nucleotides, nucleotides including thiophosphate groups (e.g., nucleosides containing 5'-thiophosphate groups), nucleotides including methylphosphonate groups, nucleotides including 5'-phosphates, nucleotides including 5'-phosphate mimics, vinyl-phosphonate nucleotides, heat-labile nucleotides, ethylene glycol modified nucleotides (GNA), nucleotides including 2'-phosphates and 2-O-(N-methylacetamide) modified nucleotides; and combinations thereof.
在一些实施方案中,dsRNA活性剂中经修饰的核苷酸中的至少一种经修饰的核苷酸选自由以下组成的组:非锁核苷酸(UNA)、锁核苷酸(LNA)、HNA、苏糖核苷酸(TNA)、CeNA、2′-甲氧基乙基、2′-O-烷基、2′-O-烯丙基、2′-C-烯丙基、2′-氟、2′-脱氧、和乙二醇;以及其组合。在一些实施方案中,dsRNA活性剂中经修饰的核苷酸中的所述经修饰的核苷酸中的至少一种经修饰的核苷酸选自由以下组成的组:脱氧核苷酸、2’-O-甲基修饰的核苷酸、2’-氟修饰的核苷酸、2’-脱氧修饰的核苷酸、包括2’磷酸酯的核苷酸和包括硫代磷酸酯基的核苷酸;以及其组合。In some embodiments, at least one of the modified nucleotides in the dsRNA activator is selected from the group consisting of: nonlocked nucleotides (UNA), locked nucleotides (LNA), HNA, threonucleotides (TNA), CeNA, 2′-methoxyethyl, 2′-O-alkyl, 2′-O-allyl, 2′-C-allyl, 2′-fluoro, 2′-deoxy, and ethylene glycol; and combinations thereof. In some embodiments, at least one of the modified nucleotides in the dsRNA activator is selected from the group consisting of: deoxynucleotides, 2′-O-methyl modified nucleotides, 2′-fluoro modified nucleotides, 2′-deoxy modified nucleotides, nucleotides comprising 2′ phosphate groups, and nucleotides comprising thiophosphate groups; and combinations thereof.
在一些实施方案中,本发明的dsRNA活性剂的反义链中的核苷酸包含2’-甲氧基(2’-O-甲基)修饰的核苷酸,例如全部核苷酸是2’-甲氧基修饰的核苷酸或1-21个核苷酸是2’甲氧基修饰的核苷酸,例如16或17个核苷酸是2’-甲氧基修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂的反义链从5’端起算第1、3-5、7-13、15和17-21位核苷酸是2’-甲氧基修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂的反义链5’端起算第1、3-6、8-11、13、15和17-21位核苷酸是2’-甲氧基修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂的正义链中包含2’-甲氧基(2’-O-甲基)修饰的核苷酸,例如全部核苷酸是2’-甲氧基修饰的核苷酸或1-19个核苷酸是2’甲氧基修饰的核苷酸,例如15或16个核苷酸是2’-甲氧基修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂的正义链从5’端起算第1-6和10-19位核苷酸是2’-甲氧基修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂的正义链5’端起算第1-6和11-19位核苷酸是2’-甲氧基修饰的核苷酸。In some embodiments, the nucleotides in the antisense strand of the dsRNA activator of the present invention comprise 2'-methoxy (2'-O-methyl) modified nucleotides, for example, all nucleotides are 2'-methoxy modified nucleotides or 1-21 nucleotides are 2'-methoxy modified nucleotides, for example, 16 or 17 nucleotides are 2'-methoxy modified nucleotides. In some embodiments, the nucleotides at positions 1, 3-5, 7-13, 15, and 17-21 from the 5' end of the antisense strand of the dsRNA activator of the present invention are 2'-methoxy modified nucleotides. In some embodiments, the nucleotides at positions 1, 3-6, 8-11, 13, 15, and 17-21 from the 5' end of the antisense strand of the dsRNA activator of the present invention are 2'-methoxy modified nucleotides. In some embodiments, the positive strand of the dsRNA activator of the present invention contains 2'-methoxy (2'-O-methyl) modified nucleotides, for example, all nucleotides are 2'-methoxy modified nucleotides or 1-19 nucleotides are 2'-methoxy modified nucleotides, for example, 15 or 16 nucleotides are 2'-methoxy modified nucleotides. In some embodiments, the positive strand of the dsRNA activator of the present invention has nucleotides 1-6 and 10-19 from the 5' end of the positive strand of the positive strand of the dsRNA activator of the present invention having nucleotides 1-6 and 11-19 from the 5' end of the positive strand of the positive strand of the dsRNA activator of the present invention having nucleotides 2'-methoxy modified nucleotides.
在一些实施方案中,本发明的dsRNA活性剂的反义链从5’端起算第1、3-5、7-13、15和17-21位核苷酸是2’-甲氧基修饰的核苷酸,且正义链从5’端起算第1-6和10-19位核苷酸是2’-甲氧基修饰的核苷酸。In some embodiments, the antisense strand of the dsRNA activator of the present invention has nucleotides 1, 3-5, 7-13, 15 and 17-21 from the 5' end that are 2'-methoxy modified nucleotides, and the sense strand has nucleotides 1-6 and 10-19 from the 5' end that are 2'-methoxy modified nucleotides.
在一些实施方案中,本发明的dsRNA活性剂的反义链5’端起算第1、3-6、8-11、13、15和17-21位核苷酸是2’-甲氧基修饰的核苷酸,且正义链5’端起算第1-6和11-19位核苷酸是2’-甲氧基修饰的核苷酸。In some embodiments, the nucleotides at positions 1, 3-6, 8-11, 13, 15, and 17-21 of the antisense strand of the dsRNA activator of the present invention, starting from the 5' end, are 2'-methoxy modified nucleotides, and the nucleotides at positions 1-6 and 11-19 of the sense strand, starting from the 5' end, are 2'-methoxy modified nucleotides.
在一些实施方案中,本发明的dsRNA活性剂的反义链中包含2’-氟修饰的核苷酸,例如1-5个核苷酸是2’-氟修饰的核苷酸,例如4个或5个核苷酸是2’-氟修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂的反义链5’端起算第2、6、14和16位核苷酸是2’-氟修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂的反义链5’端起算第2、7、12、14和16位核苷酸是2’-氟修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂的正义链中包含2’-氟修饰的核苷酸,例如1-5个核苷酸是2’-氟修饰的核苷酸,例如3个或4个核苷酸是2’-氟修饰的核苷酸。在一些实施方案中,本发明的dsRNA活性剂的正义链5’端起算第7-9位核苷酸或7-10位核苷酸是2’-氟修饰的核苷酸。In some embodiments, the antisense strand of the dsRNA activator of the present invention contains 2'-fluorinated nucleotides, for example, 1-5 nucleotides are 2'-fluorinated nucleotides, for example, 4 or 5 nucleotides are 2'-fluorinated nucleotides. In some embodiments, the 2nd, 6th, 14th, and 16th nucleotides from the 5' end of the antisense strand of the dsRNA activator of the present invention are 2'-fluorinated nucleotides. In some embodiments, the 2nd, 7th, 12th, 14th, and 16th nucleotides from the 5' end of the antisense strand of the dsRNA activator of the present invention are 2'-fluorinated nucleotides. In some embodiments, the sense strand of the dsRNA activator of the present invention contains 2'-fluorinated nucleotides, for example, 1-5 nucleotides are 2'-fluorinated nucleotides, for example, 3 or 4 nucleotides are 2'-fluorinated nucleotides. In some embodiments, the 7th-9th or 7th-10th nucleotides from the 5' end of the sense strand of the dsRNA activator of the present invention are 2'-fluorinated nucleotides.
在一些实施方案中,本发明的dsRNA活性剂中,反义链从5’端起算第2、6、14和16位核苷酸是2’-氟修饰的核苷酸,且正义链从5’端起算第7-9位核苷酸是2’-氟修饰的核苷酸。In some embodiments, in the dsRNA activator of the present invention, the nucleotides at positions 2, 6, 14 and 16 of the antisense strand, counting from the 5' end, are 2'-fluorinated nucleotides, and the nucleotides at positions 7-9 of the sense strand, counting from the 5' end, are 2'-fluorinated nucleotides.
在一些实施方案中,本发明的dsRNA活性剂中,反义链从5’端起算第2、7、12、14和16位核苷酸是2’-氟修饰的核苷酸,且正义链从5’端起算第7-10位核苷酸是2’-氟修饰的核苷酸。In some embodiments, in the dsRNA activator of the present invention, the nucleotides at positions 2, 7, 12, 14 and 16 of the antisense strand, counting from the 5' end, are 2'-fluorinated nucleotides, and the nucleotides at positions 7-10 of the sense strand, counting from the 5' end, are 2'-fluorinated nucleotides.
在一些实施方案中,dsRNA活性剂的一个或多个核苷酸通过非标准键或骨架(即,经修饰的核苷间键或经修饰的骨架)连接。在一些实施方案中,经修饰的核苷间键为包含非磷酸根的共价核苷间键。在一些实施方案中,经修饰的核苷间键或骨架包括但不限于:5'-硫代磷酸酯基团(本文表示为小写“s”)、手性硫代磷酸酯、硫代磷酸酯、二硫代磷酸酯、磷酸三酯、氨基烷基磷酸三酯、烷基膦酸酯(例如,甲基膦酸酯或3'-亚烷基膦酸酯)、手性膦酸酯、次膦酸酯、磷酰胺(例如,3'-氨基磷酰胺、氨基烷基磷酰胺或硫代磷酰胺)、硫代烷基-膦酸酯、硫代烷基磷酸酯、吗啉代键、具有正常3'-5'键的硼烷磷酸酯、2'-5'键的硼烷磷酸类似物,或其中相邻的核苷单元对为3'-5'至5'-3'或2'-5'至5'-2'键的具有反极性的硼烷磷酸酯。在一些实施方案中,经修饰的核苷间键或骨架不含磷原子。在一些实施方案中,不含磷原子的经修饰的核苷间键包括但不限于:短链烷基或环烷基糖间键、混合杂原子和烷基或环烷基糖间键或一个或多个短链杂原子或杂环糖间键。在一些实施方案中,经修饰的核苷间骨架包括但不限于:硅氧烷骨架、硫化物骨架、亚砜骨架、砜骨架、甲酰乙酰基和硫代甲酰乙酰基骨架、亚甲基甲酰乙酰基和硫代甲酰乙酰基骨架、含烯烃骨架、氨基磺酸骨架、亚甲基亚氨基和亚甲基肼骨架、磺酸酯和磺酰胺骨架、酰胺骨架和其他具有混合的N、O、S和CH2组分的骨架。In some embodiments, one or more nucleotides of the dsRNA activator are linked by a non-standard bond or backbone (i.e., a modified nucleotide bond or a modified backbone). In some embodiments, the modified nucleotide bond is a covalent nucleotide bond containing a non-phosphate group. In some embodiments, the modified nucleoside internucleotide bond or skeleton includes, but is not limited to: a 5'-thiophosphate group (represented herein as lowercase "s"), a chiral thiophosphate, a thiophosphate, a dithiophosphate, a triphosphate, an aminoalkyl phosphate triester, an alkylphosphonate (e.g., a methylphosphonate or a 3'-alkylenephosphonate), a chiral phosphonate, a hypophosphonate, a phosphoramide (e.g., a 3'-aminophosphoramide, an aminoalkylphosphoramide, or a thiophosphoramide), a thioalkyl-phosphonate, a thioalkyl phosphate, a morpholino bond, a borophosphate having a normal 3'-5' bond, a borophosphate analog having a 2'-5' bond, or a borophosphate having an antipolarity wherein adjacent nucleoside unit pairs are 3'-5' to 5'-3' or 2'-5'-2' bonds. In some embodiments, the modified nucleoside internucleotide bond or skeleton does not contain a phosphorus atom. In some embodiments, the modified nucleoside interbonds that do not contain phosphorus atoms include, but are not limited to: short-chain alkyl or cycloalkyl sugar interbonds, mixed heteroatom and alkyl or cycloalkyl sugar interbonds, or one or more short-chain heteroatom or heterocyclic sugar interbonds. In some embodiments, the modified nucleoside interskeletons include, but are not limited to: siloxane skeletons, sulfide skeletons, sulfoxide skeletons, sulfone skeletons, formylacetyl and thioformylacetyl skeletons, methyleneformylacetyl and thioformylacetyl skeletons, olefin-containing skeletons, aminosulfonic acid skeletons, methyleneimino and methylenehydrazine skeletons, sulfonate and sulfonamide skeletons, amide skeletons, and other skeletons having mixed N, O, S, and CH2 components.
在一些实施方案中,dsRNA活性剂的正义链可含有1、2、3、4、5或6个硫代磷酸酯键。在一些实施方案中,dsRNA活性剂的反义链可含有1、2、3、4、5或6个硫代磷酸酯键。在一些实施方案中,正义链和反义链均可独立地含有1、2、3、4、5或6个硫代磷酸酯键。在一些实施方案中,dsRNA活性剂的正义链可含有1、2、3或4个硫代磷酸酯键。在一些实施方案中,dsRNA活性剂的反义链可含有1、2、3或4个硫代磷酸酯键。在一些实施方案中,正义链和反义链均可独立地含有1、2、3或4个硫代磷酸酯键。In some embodiments, the sense strand of the dsRNA activator may contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds. In some embodiments, the antisense strand of the dsRNA activator may contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds. In some embodiments, both the sense and antisense strands may independently contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds. In some embodiments, the sense strand of the dsRNA activator may contain 1, 2, 3, or 4 phosphate-thioester bonds. In some embodiments, the antisense strand of the dsRNA activator may contain 1, 2, 3, or 4 phosphate-thioester bonds. In some embodiments, both the sense and antisense strands may independently contain 1, 2, 3, or 4 phosphate-thioester bonds.
在一些实施方案中,dsRNA活性剂的正义链可含有1、2、3、4、5或6个硫代磷酸酯键,dsRNA活性剂的反义链可含有1、2、3、4、5或6个硫代磷酸酯键,该正义链和反义链均可独立地含有1、2、3、4、5或6个硫代磷酸酯键。在一些实施方案中,dsRNA活性剂的正义链可含有1、2、3或4个硫代磷酸酯键,dsRNA活性剂的反义链可含有1、2、3或4个硫代磷酸酯键,该正义链和反义链均可独立地含有1、2、3或4个硫代磷酸酯键。In some embodiments, the sense strand of the dsRNA activator may contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds, and the antisense strand of the dsRNA activator may contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds, and both the sense and antisense strands may independently contain 1, 2, 3, 4, 5, or 6 phosphate-thioester bonds. In some embodiments, the sense strand of the dsRNA activator may contain 1, 2, 3, or 4 phosphate-thioester bonds, and the antisense strand of the dsRNA activator may contain 1, 2, 3, or 4 phosphate-thioester bonds, and both the sense and antisense strands may independently contain 1, 2, 3, or 4 phosphate-thioester bonds.
在一些实施方案中,dsRNA活性剂正义链含有2个硫代磷酸酯核苷间键。在一些实施方案中,该2个硫代磷酸酯核苷间键位于从正义链5'端开始1-3位的核苷酸之间。在一些实施方案中,dsRNA活性剂反义链含有4个硫代磷酸酯核苷间键。在一些实施方案中,该4个硫代磷酸酯核苷间键位于从反义链5'端开始1-3位的核苷酸之间和从3'端开始1-3位的核苷酸之间。在一些实施方案中,dsRNA活性剂在正义链中含有两个硫代磷酸酯核苷间键,在反义链中含有4个硫代磷酸酯核苷间键。在一些实施方案中,dsRNA活性剂在正义链中含有5’端起算1-3位核苷酸之间的两个硫代磷酸酯核苷间键,在反义链中含有5’端起算第1-3位和3’端起算第1-3位核苷酸之间的4个硫代磷酸酯核苷间键。In some embodiments, the dsRNA activator's sense strand contains two phosphate-thioester nucleoside bonds. In some embodiments, these two phosphate-thioester nucleoside bonds are located between nucleotides at positions 1-3 starting from the 5' end of the sense strand. In some embodiments, the dsRNA activator's antisense strand contains four phosphate-thioester nucleoside bonds. In some embodiments, these four phosphate-thioester nucleoside bonds are located between nucleotides at positions 1-3 starting from the 5' end and between nucleotides at positions 1-3 starting from the 3' end of the antisense strand. In some embodiments, the dsRNA activator contains two phosphate-thioester nucleoside bonds in the sense strand and four phosphate-thioester nucleoside bonds in the antisense strand. In some embodiments, the dsRNA activator contains two phosphate-thioester nucleoside bonds between nucleotides at positions 1-3 starting from the 5' end in the sense strand and four phosphate-thioester nucleoside bonds between nucleotides at positions 1-3 starting from the 5' end and 1-3 starting from the 3' end in the antisense strand.
dsRNA活性剂的其他修饰方式还可以参见例如WO2023044094A1、WO2023245060A2、或WO2018/027106中列出的修饰,所述专利以其全文引入本文。Other modifications of the dsRNA activator can be found in, for example, those listed in WO2023044094A1, WO2023245060A2, or WO2018/027106, the entire contents of which are incorporated herein by reference.
在一些实施方案中,dsRNA活性剂的正义链和反义链中经修饰的核苷酸具有如下修饰模式:In some implementations, the modified nucleotides in the sense and antisense strands of the dsRNA activator have the following modification patterns:
反义链:antisense chain:
NmsNfsNmNmNmNfNmNmNmNmNmNmNmNfNmNfNmNmNmsNmsNm;和/或NmsNfsNmNmNmNfNmNmNmNmNmNmNmNfNmNfNmNmNmsNmsNm; and/or
正义链:Chain of Justice:
NmsNmsNmNmNmNmNfNfNfNmNmNmNmNmNmNmNmNmNmNmsNmsNmNmNmNmNfNfNfNmNmNmNmNmNmNmNmNmNmNm
其中,in,
Nf=任何2'-氟修饰的核苷酸Nf = any 2'-fluorine modified nucleotide
Nfs=任何2’-氟修饰的核苷-3’硫代磷酸酯;Nfs = any 2'-fluorine modified nucleoside-3' thiophosphate;
Nm=任何2'-甲氧基核苷酸;Nm = any 2'-methoxynucleotide;
Nms=任何2'-甲氧基核苷-3'-硫代磷酸酯;Nms = any 2'-methoxynucleoside-3'-thiophosphate;
s代表两个核苷酸之间为硫代磷酸酯键连接。's' indicates that the two nucleotides are linked by a phosphate thioester bond.
在一些实施方案中,dsRNA活性剂的正义链和反义链中经修饰的核苷酸具有如下修饰模式:In some implementations, the modified nucleotides in the sense and antisense strands of the dsRNA activator have the following modification patterns:
反义链:antisense chain:
NmsNfsNmNmNmNmNfNmNmNmNmNfNmNfNmNfNmNmNmsNmsNm;和/或NmsNfsNmNmNmNmNfNmNmNmNmNfNmNfNmNfNmNmNmsNmsNm; and/or
正义链:Chain of Justice:
NmsNmsNmNmNmNmNfNfNfNfNmNmNmNmNmNmNmNmNm;NmsNmsNmNmNmNmNfNfNfNfNmNmNmNmNmNmNmNmNm;
其中,in,
Nf=任何2'-氟修饰的核苷酸Nf = any 2'-fluorine modified nucleotide
Nfs=任何2’-氟修饰的核苷-3’硫代磷酸酯;Nfs = any 2'-fluorine modified nucleoside-3' thiophosphate;
Nm=任何2'-甲氧基核苷酸;Nm = any 2'-methoxynucleotide;
Nms=任何2'-甲氧基核苷-3'-硫代磷酸酯;Nms = any 2'-methoxynucleoside-3'-thiophosphate;
s代表两个核苷酸之间为硫代磷酸酯键连接。's' indicates that the two nucleotides are linked by a phosphate thioester bond.
在一些实施方案中,本发明的特定修饰模式特别适合于本公开的dsRNA活性剂,例如具有特定修饰模式的本发明的dsRNA活性剂在体内对靶基因INHBE mRNA的抑制水平优于对照siRNA,尽管其在体外筛选中对靶基因INHBE mRNA的抑制水平低于对照siRNA。在一些本公开的dsRNA活性剂的一些实施方案中,特定正义链和反义链的核苷酸序列与特定修饰模式组合(任选地还包含本公开的配体)获得了具有如下一种或多种或全部特征的dsRNA活性剂:In some embodiments, specific modification patterns of the present invention are particularly suitable for the dsRNA activators of the present disclosure. For example, dsRNA activators of the present invention with specific modification patterns exhibit superior levels of inhibition against the target gene INHBE mRNA in vivo compared to control siRNA, although their levels of inhibition against the target gene INHBE mRNA are lower than those against control siRNA in in vitro screening. In some embodiments of the dsRNA activators of the present disclosure, specific nucleotide sequences of the sense and antisense strands are combined with specific modification patterns (optionally also including ligands of the present disclosure) to obtain dsRNA activators having one or more of the following characteristics:
(i)在体内具有相比对照siRNA(例如WO2023003922A1中的AD-1708473或AD-1708473.1)更优的对INHBE的mRNA的表达抑制;(i) It exhibits superior inhibition of INHBE mRNA expression in vivo compared to control siRNAs (e.g., AD-1708473 or AD-1708473.1 in WO2023003922A1);
(ii)在体内对INHBE基因敲低和INHBE mRNA表达抑制具有长效性,例如在给药后1周、2周、3周或5周后仍然具有对靶基因INHBE的抑制;(ii) It has a long-lasting effect on knockdown of the INHBE gene and inhibition of INHBE mRNA expression in vivo, for example, it still inhibits the target gene INHBE 1, 2, 3 or 5 weeks after administration.
(iii)在体内具有相比对照siRNA(例如WO2023003922A1中的AD-1708473或AD-1708473.1)更优的治疗效果,例如降低体重和/或体脂;(iii) It has superior therapeutic effects in vivo compared to control siRNAs (e.g., AD-1708473 or AD-1708473.1 in WO2023003922A1), such as reducing weight and/or body fat;
(iv)在体内具有长效治疗效果,如对肥胖的治疗效果,如能够长效维持对患者体重和/或体脂的降低效果;在一些实施方案中,在最后一次给药后1周、2周、3周或60天仍然能有有效治疗患者肥胖,例如维持患者体重和/或体脂,或者降低患者体重和/或体脂。(iv) It has a long-lasting therapeutic effect in vivo, such as a therapeutic effect on obesity, such as the ability to maintain a long-lasting effect on reducing the patient's weight and/or body fat; in some embodiments, it can still effectively treat the patient's obesity 1 week, 2 weeks, 3 weeks or 60 days after the last administration, such as maintaining the patient's weight and/or body fat, or reducing the patient's weight and/or body fat.
在一些实施方案中,dsRNA活性剂中的反义链包含说明书表2中反义链中的任一个经修饰的核苷酸序列,和/或所述正义链包含说明书表2中正义链中的任一个经修饰的核苷酸序列。In some embodiments, the antisense strand of the dsRNA activator comprises any modified nucleotide sequence of the antisense strand in Table 2 of the specification, and/or the sense strand comprises any modified nucleotide sequence of the sense strand in Table 2 of the specification.
在一些实施方案中,dsRNA活性剂中的修饰的反义链和正义链的组合如表2中所示的反义链和正义链的任何组合所示。In some implementations, the combination of modified antisense and sense strands in the dsRNA activator is shown in Table 2 as any combination of antisense and sense strands.
在一些实施方案中,所述dsRNA活性剂是表2中所示的任何dsRNA活性剂。In some embodiments, the dsRNA activator is any of the dsRNA activators shown in Table 2.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中所述正义链和反义链分别包含SEQ ID NO:331/441、SEQ ID NO:332/442、SEQ ID NO:333/443、SEQ ID NO:334/444、SEQ ID NO:335/445、SEQ ID NO:336/446、SEQ ID NO:337/447、SEQ ID NO:338/448、SEQ ID NO:339/449、SEQ ID NO:340/450、SEQ ID NO:341/451、SEQ ID NO:342/452、SEQ ID NO:343/453、SEQ ID NO:344/454、SEQ ID NO:345/455、SEQ ID NO:346/456、SEQ ID NO:347/457、SEQ ID NO:348/458、SEQ ID NO:349/459、SEQ ID NO:350/460、SEQ ID NO:351/461、SEQ ID NO:352/462、SEQ ID NO:353/463、SEQ ID NO:354/464、SEQ ID NO:355/465、SEQ ID NO:356/466、SEQ ID NO:357/467、SEQ ID NO:358/468、SEQ ID NO:359/469、SEQ ID NO:360/470、SEQ ID NO:361/471、SEQ ID NO:362/472、SEQ ID NO:363/473、SEQ ID NO:364/474、SEQ ID NO:365/475、SEQ ID NO:366/476、SEQ ID NO:367/477、SEQ ID NO:368/478、SEQ ID NO:369/479、SEQ ID NO:370/480、SEQ ID NO:371/481、SEQ ID NO:372/482、SEQ ID NO:373/483、SEQ ID NO:374/484、SEQ ID NO:375/485、SEQ ID NO:376/486、SEQ ID NO:377/487、SEQ ID NO:378/488、SEQ ID NO:379/489、SEQ ID NO:380/490、SEQ ID NO:381/491、SEQ ID NO:382/492、SEQ ID NO:383/493、SEQ ID NO:384/494、SEQ ID NO:385/495、SEQ ID NO:386/496、SEQ ID NO:387/497、SEQ ID NO:388/498、SEQ ID NO:389/499、SEQ ID NO:390/500、SEQ ID NO:391/501、SEQ ID NO:392/502、SEQ ID NO:393/503、SEQ ID NO:394/504、SEQ ID NO:395/505、SEQ ID NO:396/506、SEQ ID NO:397/507、SEQ ID NO:398/508、SEQ ID NO:399/509、SEQ ID NO:400/510、SEQ ID NO:401/511、SEQ ID NO:402/512、SEQ ID NO:403/513、SEQ ID NO:404/514、SEQ ID NO:405/515、SEQ ID NO:406/516、SEQ ID NO:407/517、SEQ ID NO:408/518、SEQ ID NO:409/519、SEQ ID NO:410/520、SEQ ID NO:411/521、SEQ ID NO:412/522、SEQ ID NO:413/523、SEQ ID NO:414/524、SEQ ID NO:415/525、SEQ ID NO:416/526、SEQ ID NO:417/527、SEQ ID NO:418/528、SEQ ID NO:419/529、SEQ ID NO:420/530、SEQ ID NO:421/531、SEQ ID NO:422/532、SEQ ID NO:423/533、SEQ ID NO:424/534、SEQ ID NO:425/535、SEQ ID NO:426/536、SEQ ID NO:427/537、SEQ ID NO:428/538、SEQ ID NO:429/539、SEQ ID NO:430/540、SEQ ID NO:431/541、SEQ ID NO:432/542、SEQ ID NO:433/543、SEQ ID NO:434/544、SEQ ID NO:435/545、SEQ ID NO:436/546、SEQ ID NO:437/547、SEQ ID NO:438/548、SEQ ID NO:439/549、SEQ ID NO:440/550、SEQ ID NO:661/662所示的核苷酸序列中的至少15、16、17、18或19个连续的经修饰的核苷酸,任选地所述反义链还具有1或2个核苷酸的3’突出端,任选地所述反义链在5’端第一个核苷酸为修饰的A或U,例如经修饰的U,例如Um或Am,例如Um。In some specific embodiments, the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and the antisense strand respectively comprise SEQ ID NO:331/441, SEQ ID NO:332/442, SEQ ID NO:333/443, SEQ ID NO:334/444, SEQ ID NO:335/445, SEQ ID NO:336/446, SEQ ID NO:337/447, SEQ ID NO:338/448, SEQ ID NO:339/449, SEQ ID NO:340/450, SEQ ID NO:341/451, SEQ ID NO:342/452, SEQ ID NO:331/441, SEQ ID NO:332/452, SEQ ID NO:331/441, SEQ ID NO:332/442, SEQ ID NO:333/443, SEQ ID NO:334/444, SEQ ID NO:335/445, SEQ ID NO:336/446, SEQ ID NO:337/447, SEQ ID NO:338/448, SEQ ID NO:339/449, SEQ ID NO:340/450, SEQ ID NO:341/451, SEQ ID NO:342/452, SEQ ID NO:331/441, SEQ ID NO:332/442, SEQ ID NO:333/443, SEQ ID NO:334/444, SEQ ID NO:335/445, SEQ ID NO:336/446, SEQ ID NO:337/447, SEQ ID NO:338/448, SEQ ID NO:339/449, SEQ ID NO:340/450, SEQ ID NO:34 NO:343/453、SEQ ID NO:344/454、SEQ ID NO:345/455、SEQ ID NO:346/456、SEQ ID NO:347/457、SEQ ID NO:348/458、SEQ ID NO:349/459、SEQ ID NO:350/ 460. SEQ ID NO:351/461, SEQ ID NO:352/462, SEQ ID NO:353/463, SEQ ID NO:354/464, SEQ ID NO:355/465, SEQ ID NO:356/466, SEQ ID NO:357/467, SEQ I D NO:358/468、SEQ ID NO:359/469、SEQ ID NO:360/470、SEQ ID NO:361/471、SEQ ID NO:362/472、SEQ ID NO:363/473、SEQ ID NO:364/474、SEQ ID NO:365 /475、SEQ ID NO:366/476、SEQ ID NO:367/477、SEQ ID NO:368/478、SEQ ID NO:369/479、SEQ ID NO:370/480、SEQ ID NO:371/481、SEQ ID NO:372/482、SEQ ID NO:373/483、SEQ ID NO:374/484、SEQ ID NO:375/485、SEQ ID NO:376/486、SEQ ID NO:377/487、SEQ ID NO:378/488、SEQ ID NO:379/489、SEQ ID NO:380 /490、SEQ ID NO:381/491、SEQ ID NO:382/492、SEQ ID NO:383/493、SEQ ID NO:384/494、SEQ ID NO:385/495、SEQ ID NO:386/496、SEQ ID NO:387/497、SEQ ID NO:388/498、SEQ ID NO:389/499、SEQ ID NO:390/500、SEQ ID NO:391/501、SEQ ID NO:392/502、SEQ ID NO:393/503、SEQ ID NO:394/504、SEQ ID NO:39 5/505、SEQ ID NO:396/506、SEQ ID NO:397/507、SEQ ID NO:398/508、SEQ ID NO:399/509、SEQ ID NO:400/510、SEQ ID NO:401/511、SEQ ID NO:402/512、SEQ ID NO:403/513、SEQ ID NO:404/514、SEQ ID NO:405/515、SEQ ID NO:406/516、SEQ ID NO:407/517、SEQ ID NO:408/518、SEQ ID NO:409/519、SEQ ID NO:4 10/520、SEQ ID NO:411/521、SEQ ID NO:412/522、SEQ ID NO:413/523、SEQ ID NO:414/524、SEQ ID NO:415/525、SEQ ID NO:416/526、SEQ ID NO:417/527、SE Q ID NO:418/528、SEQ ID NO:419/529、SEQ ID NO:420/530、SEQ ID NO:421/531、SEQ ID NO:422/532、SEQ ID NO:423/533、SEQ ID NO:424/534、SEQ ID NO: 425/535、SEQ ID NO:426/536、SEQ ID NO:427/537、SEQ ID NO:428/538、SEQ ID NO:429/539、SEQ ID NO:430/540、SEQ ID NO:431/541、SEQ ID NO:432/542、S The antisense strand comprises at least 15, 16, 17, 18, or 19 consecutive modified nucleotides in the nucleotide sequences shown in EQ ID NO:433/543, SEQ ID NO:434/544, SEQ ID NO:435/545, SEQ ID NO:436/546, SEQ ID NO:437/547, SEQ ID NO:438/548, SEQ ID NO:439/549, SEQ ID NO:440/550, and SEQ ID NO:661/662. Optionally, the antisense strand also has a 3' overhang of one or two nucleotides. Optionally, the first nucleotide at the 5' end of the antisense strand is a modified A or U, such as a modified U, such as Um, or Am, such as Um.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中所述正义链和反义链分别包含SEQ ID NO:331/441、SEQ ID NO:332/442、SEQ ID NO:333/443、SEQ ID NO:334/444、SEQ ID NO:335/445、SEQ ID NO:336/446、SEQ ID NO:337/447、SEQ ID NO:338/448、SEQ ID NO:339/449、SEQ ID NO:340/450、SEQ ID NO:341/451、SEQ ID NO:342/452、SEQ ID NO:343/453、SEQ ID NO:344/454、SEQ ID NO:345/455、SEQ ID NO:346/456、SEQ ID NO:347/457、SEQ ID NO:348/458、SEQ ID NO:349/459、SEQ ID NO:350/460、SEQ ID NO:351/461、SEQ ID NO:352/462、SEQ ID NO:353/463、SEQ ID NO:354/464、SEQ ID NO:355/465、SEQ ID NO:356/466、SEQ ID NO:357/467、SEQ ID NO:358/468、SEQ ID NO:359/469、SEQ ID NO:360/470、SEQ ID NO:361/471、SEQ ID NO:362/472、SEQ ID NO:363/473、SEQ ID NO:364/474、SEQ ID NO:365/475、SEQ ID NO:366/476、SEQ ID NO:367/477、SEQ ID NO:368/478、SEQ ID NO:369/479、SEQ ID NO:370/480、SEQ ID NO:371/481、SEQ ID NO:372/482、SEQ ID NO:373/483、SEQ ID NO:374/484、SEQ ID NO:375/485、SEQ ID NO:376/486、SEQ ID NO:377/487、SEQ ID NO:378/488、SEQ ID NO:379/489、SEQ ID NO:380/490、SEQ ID NO:381/491、SEQ ID NO:382/492、SEQ ID NO:383/493、SEQ ID NO:384/494、SEQ ID NO:385/495、SEQ ID NO:386/496、SEQ ID NO:387/497、SEQ ID NO:388/498、SEQ ID NO:389/499、SEQ ID NO:390/500、SEQ ID NO:391/501、SEQ ID NO:392/502、SEQ ID NO:393/503、SEQ ID NO:394/504、SEQ ID NO:395/505、SEQ ID NO:396/506、SEQ ID NO:397/507、SEQ ID NO:398/508、SEQ ID NO:399/509、SEQ ID NO:400/510、SEQ ID NO:401/511、SEQ ID NO:402/512、SEQ ID NO:403/513、SEQ ID NO:404/514、SEQ ID NO:405/515、SEQ ID NO:406/516、SEQ ID NO:407/517、SEQ ID NO:408/518、SEQ ID NO:409/519、SEQ ID NO:410/520、SEQ ID NO:411/521、SEQ ID NO:412/522、SEQ ID NO:413/523、SEQ ID NO:414/524、SEQ ID NO:415/525、SEQ ID NO:416/526、SEQ ID NO:417/527、SEQ ID NO:418/528、SEQ ID NO:419/529、SEQ ID NO:420/530、SEQ ID NO:421/531、SEQ ID NO:422/532、SEQ ID NO:423/533、SEQ ID NO:424/534、SEQ ID NO:425/535、SEQ ID NO:426/536、SEQ ID NO:427/537、SEQ ID NO:428/538、SEQ ID NO:429/539、SEQ ID NO:430/540、SEQ ID NO:431/541、SEQ ID NO:432/542、SEQ ID NO:433/543、SEQ ID NO:434/544、SEQ ID NO:435/545、SEQ ID NO:436/546、SEQ ID NO:437/547、SEQ ID NO:438/548、SEQ ID NO:439/549、SEQ ID NO:440/550、SEQ ID NO:661/662所示的经修饰的核苷酸序列或分别由所示的经修饰的核苷酸序列组成。In some specific embodiments, the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and antisense strand respectively comprise SEQ ID NO:331/441, SEQ ID NO:332/442, SEQ ID NO:333/443, SEQ ID NO:334/444, SEQ ID NO:335/445, SEQ ID NO:336/446, SEQ ID NO:337/447, SEQ ID NO:338/448, SEQ ID NO:339/449, SEQ ID NO:340/450, SEQ ID NO:341/451, SEQ ID NO:342/ 452. SEQ ID NO:343/453, SEQ ID NO:344/454, SEQ ID NO:345/455, SEQ ID NO:346/456, SEQ ID NO:347/457, SEQ ID NO:348/458, SEQ ID NO:349/459 , SEQ ID NO:350/460, SEQ ID NO:351/461, SEQ ID NO:352/462, SEQ ID NO:353/463, SEQ ID NO:354/464, SEQ ID NO:355/465, SEQ ID NO:356/466, SEQ ID NO:357/467、SEQ ID NO:358/468、SEQ ID NO:359/469、SEQ ID NO:360/470、SEQ ID NO:361/471、SEQ ID NO:362/472、SEQ ID NO:363/473、SEQ ID NO:364/474、SEQ ID NO:365/475、SEQ ID NO:366/476、SEQ ID NO:367/477、SEQ ID NO:368/478、SEQ ID NO:369/479、SEQ ID NO:370/480、SEQ ID NO: 371/481、SEQ ID NO:372/482、SEQ ID NO:373/483、SEQ ID NO:374/484、SEQ ID NO:375/485、SEQ ID NO:376/486、SEQ ID NO:377/487、SEQ ID NO:378/ 488. SEQ ID NO:379/489, SEQ ID NO:380/490, SEQ ID NO:381/491, SEQ ID NO:382/492, SEQ ID NO:383/493, SEQ ID NO:384/494, SEQ ID NO:385/495, SEQ ID NO:386/496、SEQ ID NO:387/497、SEQ ID NO:388/498、SEQ ID NO:389/499、SEQ ID NO:390/500、SEQ ID NO:391/501、SEQ ID NO:392/502、SEQ ID NO:393/503、SEQ ID NO:394/504、SEQ ID NO:395/505、SEQ ID NO:396/506、SEQ ID NO:397/507、SEQ ID NO:398/508、SEQ ID NO:399/509、SEQ ID NO:400/510、SEQ ID NO:401/511、SEQ ID NO:402/512、SEQ ID NO:403/513、SEQ ID NO:404/514、SEQ ID NO:405/515、SEQ ID NO:406/516、SEQ ID NO:4 07/517、SEQ ID NO:408/518、SEQ ID NO:409/519、SEQ ID NO:410/520、SEQ ID NO:411/521、SEQ ID NO:412/522、SEQ ID NO:413/523、SEQ ID NO:414/5 24. SEQ ID NO:415/525, SEQ ID NO:416/526, SEQ ID NO:417/527, SEQ ID NO:418/528, SEQ ID NO:419/529, SEQ ID NO:420/530, SEQ ID NO:421/531, SEQ ID NO:422/532、SEQ ID NO:423/533、SEQ ID NO:424/534、SEQ ID NO:425/535、SEQ ID NO:426/536、SEQ ID NO:427/537、SEQ ID NO:428/538、SEQ The modified nucleotide sequences shown in SEQ ID NO:429/539, SEQ ID NO:430/540, SEQ ID NO:431/541, SEQ ID NO:432/542, SEQ ID NO:433/543, SEQ ID NO:434/544, SEQ ID NO:435/545, SEQ ID NO:436/546, SEQ ID NO:437/547, SEQ ID NO:438/548, SEQ ID NO:439/549, SEQ ID NO:440/550, and SEQ ID NO:661/662, or each consisting of the modified nucleotide sequences shown.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中In some specific implementations, the dsRNA activator comprises a sense strand and an antisense strand, wherein
所述正义链包含SEQ ID NO:390所示的经修饰的核苷酸序列或由其组成,且所述反义链包含SEQ ID NO:500所示的经修饰的核苷酸序列或由其组成;The sense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:390, and the antisense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:500.
所述正义链包含SEQ ID NO:431所示的经修饰的核苷酸序列或由其组成,且所述反义链包含SEQ ID NO:541所示的经修饰的核苷酸序列或由其组成;The sense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:431, and the antisense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:541.
所述正义链包含SEQ ID NO:661所示的经修饰的核苷酸序列或由其组成,且所述反义链包含SEQ ID NO:662所示的经修饰的核苷酸序列或由其组成。The sense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:661, and the antisense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:662.
如本文所用(例如在表1、表2和表3中),以下符号用于表示经修饰的核苷酸、靶向基团和连接基团。除非序列另有指明,否则如本领域普通技术人员将易于理解的,当存在于寡核苷酸中时,这些单体通过5'-3'-磷酸二酯键相互连接(两个核苷酸中的第一个核苷酸为硫代磷酸酯(s)时,s代表两个核苷酸之间为硫代磷酸酯键连接):As used herein (e.g., in Tables 1, 2, and 3), the following symbols are used to denote modified nucleotides, targeting groups, and linking groups. Unless otherwise specified in the sequence, it will be readily understood by those skilled in the art that, when present in oligonucleotides, these monomers are interconnected by 5'-3'-phosphodiester bonds (where 's' represents a phosphothioester bond connecting the two nucleotides when the first nucleotide of the two nucleotides is a phosphothioester (s)):
Nf=任何2'-氟修饰的核苷酸Nf = any 2'-fluorine modified nucleotide
Nfs=任何2’-氟修饰的核苷-3’硫代磷酸酯Nfs = any 2'-fluorine-modified nucleoside-3'-thiophosphate ester
Af=2'-氟腺苷-3'-磷酸酯Af = 2'-Fluoroadenosine-3'-phosphate
Afs=2'-氟腺苷-3'-硫代磷酸酯Afs = 2'-Fluoroadenosine-3'-Thiophosphate
Cf=2'-氟胞苷-3'-磷酸酯Cf = 2'-Fluorocytidine-3'-phosphate
Cfs=2'-氟胞苷-3'-硫代磷酸酯Cfs = 2'-Fluorocytidine-3'-Thiophosphate
Gf=2'-氟鸟苷-3'-磷酸酯Gf = 2'-Fluoroguanosine-3'-phosphate
Gfs=2'-氟鸟苷-3'-硫代磷酸酯Gfs = 2'-Fluoroguanosine-3'-Thiophosphate
Tf=2'-氟-5'-甲基尿苷-3'-磷酸酯Tf = 2'-Fluoro-5'-methyluridine-3'-phosphate
Tfs=2'-氟-5'-甲基尿苷-3'-硫代磷酸酯Tfs = 2'-Fluoro-5'-methyluridine-3'-thiophosphate
Uf=2'-氟尿苷-3'-磷酸酯Uf = 2'-fluorouridine-3'-phosphate
Ufs=2'-氟尿苷-3'-硫代磷酸酯Ufs = 2'-fluorouridine-3'-thiophosphate
Nm=任何2'-甲氧基核苷酸Nm = any 2'-methoxynucleotide
Nms=任何2'-甲氧基核苷-3'-硫代磷酸酯Nms = any 2'-methoxynucleoside-3'-thiophosphate
Am=2'-甲氧基腺苷-3'-磷酸酯Am = 2'-methoxyadenosine-3'-phosphate
Ams=2'-甲氧基腺苷-3'-硫代磷酸酯Ams = 2'-methoxyadenosine-3'-thiophosphate
Tm=2'-甲氧基胸苷-3'-磷酸酯Tm = 2'-methoxythymidine-3'-phosphate
Tms=2'-甲氧基胸苷-3'-硫代磷酸酯Tms = 2'-methoxythymidine-3'-thiophosphate
Um=2'-甲氧基尿苷-3'-磷酸酯Um = 2'-methoxyuridine-3'-phosphate
Ums=2'-甲氧基尿苷-3'-硫代磷酸酯Ums = 2'-methoxyuridine-3'-thiophosphate
Gm=2'-甲氧基鸟苷-3'-磷酸酯Gm = 2'-methoxyguanosine-3'-phosphate
Gms=2'-甲氧基鸟苷-3'-硫代磷酸酯Gms = 2'-methoxyguanosine-3'-thiophosphate
Cm=2'-甲氧基胞苷-3'-磷酸酯Cm = 2'-methoxycytidine-3'-phosphate
Cms=2'-甲氧基胞苷-3'-硫代磷酸酯。Cms = 2'-methoxycytidine-3'-thiophosphate.
在一些实施方案中,本发明的dsRNA活性剂进一步包括配体。当本发明提及“dsRNA”或“dsRNA活性剂”时,也涵盖与配体缀合的dsRNA,又称为dsRNA-配体缀合物。In some embodiments, the dsRNA activator of the present invention further includes a ligand. When the present invention refers to "dsRNA" or "dsRNA activator," it also encompasses dsRNA conjugated with a ligand, also known as a dsRNA-ligand conjugate.
如本文所述的,“配体”是指与dsRNA的寡核苷酸缀合的化学部分,其能够改变dsRNA的分布、靶向或半衰期。在优选的实施方案中,与例如不存在所述配体的dsRNA相比,这种配体为所选择的靶标(例如分子、细胞或细胞类型、区室(例如细胞或器官区室、组织、器官或身体的区域)提供增强的亲和力。As described herein, a "ligand" refers to a chemical moiety conjugated to an oligonucleotide of dsRNA that can alter the distribution, targeting, or half-life of the dsRNA. In a preferred embodiment, such a ligand provides enhanced affinity for selected targets (e.g., molecules, cells or cell types, compartments (e.g., cell or organ compartments, tissues, organs, or regions of the body) compared to, for example, dsRNA without the ligand.
在一些实施方案中,配体通过改进核苷酸的细胞分布、生物利用度、代谢、排泄、通透性和/或细胞摄取,调节或增强dsRNA的药代动力学特性。特别地,配体可以导引寡核苷酸至特定的器官、组织或细胞类型并且因而增强dsRNA在这种器官、组织或细胞类型中的有效性。同时,配体可以起到减少dsRNA在非靶细胞类型、组织或器官中活性(例如非靶细胞类型、组织或器官中的脱靶活性或活性)的作用。关于适用于dsRNA的配体以及缀合修饰方式,Vajinder Kumar,Targeted delivery of oligonucleotides using multivalent protein–carbohydrate interactions,Cite this:Chem.Soc.Rev.,2023,52,1273;Rosemary Kanasty,Delivery materials for siRNA therapeutics,NATURE MATERIALS,VOL 12,NOVEMBER 2013;Wanyi Tai,Current Aspects of siRNA Bioconjugate for In Vitro and In Vivo Delivery,Molecules 2019,24,2211;doi:10.3390/molecules24122211;以及WO 93/07883、WO 2013/033230、WO2023044094A1、WO2023245060A2、WO2018/027106、WO2012083185A2、WO2015021092、WO2018044350A1、WO2024/197017A2或WO2023/076451A1提供了描述,所述文献通过引用的方式并入本文作为参考。In some implementations, ligands modulate or enhance the pharmacokinetic properties of dsRNA by improving the cellular distribution, bioavailability, metabolism, excretion, permeability, and/or cellular uptake of nucleotides. Specifically, ligands can direct oligonucleotides to specific organs, tissues, or cell types and thus enhance the effectiveness of dsRNA in such organs, tissues, or cell types. Simultaneously, ligands can reduce the activity of dsRNA in non-target cell types, tissues, or organs (e.g., off-target activity or activity in non-target cell types, tissues, or organs). Regarding ligands and conjugation modifications suitable for dsRNA, see: Vajinder Kumar, Targeted delivery of oligonucleotides using multivalent protein–carbohydrate interactions, Cite this: Chem. Soc. Rev., 2023, 52, 1273; Rosemary Kanasty, Delivery materials for siRNA therapy, NATURE MATERIALS, VOL 12, NOVEMBER 2013; Wanyi Tai, Current Aspec The following documents provide descriptions: ts of siRNA Bioconjugate for In Vitro and In Vivo Delivery, Molecules 2019, 24, 2211; doi:10.3390/molecules24122211; and WO 93/07883, WO 2013/033230, WO2023044094A1, WO2023245060A2, WO2018/027106, WO2012083185A2, WO2015021092, WO2018044350A1, WO2024/197017A2 or WO2023/076451A1, which are incorporated herein by reference.
在一些实施方案中,用于本发明RNAi活性剂例如dsRNA活性剂的配体可以选自糖、细胞表面受体配体、抗体、药物、激素、亲脂物质、聚合物、蛋白质、肽、毒素(例如细菌毒素)、维生素、病毒蛋白(例如衣壳)或其组合。In some embodiments, the ligands used in the RNAi activator of the present invention, such as the dsRNA activator, may be selected from sugars, cell surface receptor ligands, antibodies, drugs, hormones, lipophilic substances, polymers, proteins, peptides, toxins (e.g., bacterial toxins), vitamins, viral proteins (e.g., capsids), or combinations thereof.
在一些实施方案中,用于本发明RNAi活性剂例如dsRNA活性剂的配体是糖,包括但不限于半乳糖、乳糖、N-乙酰半乳糖胺、甘露糖和甘露糖-6-磷酸。糖配体可以用来增强在一系列组织如肝脏和/或肌肉中的递送或活性。In some embodiments, the ligands used in the RNAi activator of the present invention, such as the dsRNA activator, are sugars, including but not limited to galactose, lactose, N-acetylgalactosamine, mannose, and mannose-6-phosphate. Sugar ligands can be used to enhance delivery or activity in a range of tissues such as the liver and/or muscle.
在一些实施方案中,配体是单糖。In some implementations, the ligand is a monosaccharide.
在一些实施方案中,配体例如单糖是N-乙酰基半乳糖胺(GalNAc)或其衍生物。包括一种或多种N-乙酰基半乳糖胺(GalNAc)或其衍生物的GalNAc配体在例如US 8,106,022、中进行了描述,所述文献的完整内容特此通过引用的方式并入本文。在一些实施方案中,GalNAc配体用作将dsRNA活性剂靶向特定细胞的配体。在一些实施方案中,GalNAc配体将dsRNA靶向肝细胞,例如通过充当肝细胞(例如,肝细胞(hepatocyte))的去唾液酸糖蛋白受体的配体。示例性的适用于递送dsRNA的GalNac配体包括例如Alnylam的三触GalNAc递送系统(参见例如PCT/US2008/085574、US8828956B2)或“(1+1+1)三价GalNac”(non-nucleosidic trivalent GalNAc)(参见例如US986788B2,Rajeev,Kallanthottathil G et al.“Hepatocyte-specific delivery of siRNAs conjugated to novel non-nucleosidic trivalent N-acetylgalactosamine elicits robust gene silencing in vivo.”Chembiochem:a European journal of chemical biology vol.16,6(2015):903-8.doi:10.1002/cbic.201500023);Dicerna的GalXCTM平台或GalXC-PlusTM(涉及单价GalNAc偶联的tetraloop结构)(参见例如WO2016100401A1),或者Arrowhead的Dynamic PolyConjugates(DPCTM,其含有丁基氨乙烯基醚的聚合物PBAVE)或者TriMTM(Targeted RNNI molecule)。所引用的文献均以全文形式并入本文。In some embodiments, the ligand, for example, a monosaccharide, is N-acetylgalactosamine (GalNAc) or a derivative thereof. GalNAc ligands comprising one or more N-acetylgalactosamine (GalNAc) or derivatives thereof are described, for example, in US 8,106,022, the full contents of which are hereby incorporated herein by reference. In some embodiments, GalNAc ligands are used as ligands to target dsRNA activators to specific cells. In some embodiments, GalNAc ligands target dsRNA to hepatocytes, for example, by acting as ligands for desialylate glycoprotein receptors of hepatocytes (e.g., hepatocytes). Exemplary GalNac ligands suitable for delivering dsRNA include, for example, Alnylam's three-touch GalNAc delivery system (see, for example, PCT/US2008/085574, US8828956B2) or "(1+1+1) trivalent GalNAc" (non-nucleosidic trivalent GalNAc) (see, for example, US986788B2, Rajeev, Kallanthottathil G et al. "Hepatocyte-specific delivery of siRNAs conjugated to novel non-nucleosidic trivalent N-acetylgalactosamine elicits robust gene silencing in vivo." Chembiochem: a European journal of chemical biology vol. 16, 6(2015): 903-8. doi: 10.1002/cbic.201500023); Dicerna's GalXC ™ platform or GalXC-Plus ™ (This involves monovalent GalNAc-coupled tetraloop structures) (see, for example, WO2016100401A1), or Arrowhead's Dynamic PolyConjugates (DPC ™ , which contains PBAVE polymers of butylaminovinyl ether) or TriM ™ (Targeted RNNI molecule). All cited references are incorporated herein by reference in full.
常用的与dsRNA缀合的配体还可以参见例如WO2023044094A1、WO2023245060A2、或WO2018/027106中公开的那些,或WO2012083185A2、WO2015021092、WO2018044350A1、WO2024/197017A2或WO2023/076451A1中公开的那些等,所述文献的完整内容特此通过引用的方式并入本文。Commonly used ligands conjugated with dsRNA can also be found in, for example, those disclosed in WO2023044094A1, WO2023245060A2, or WO2018/027106, or those disclosed in WO2012083185A2, WO2015021092, WO2018044350A1, WO2024/197017A2, or WO2023/076451A1, the full contents of which are hereby incorporated herein by reference.
在一些实施方案中,用于本发明RNAi活性剂例如dsRNA活性剂的配体是脱唾液酸糖蛋白受体(ASGPR)配体。特别地,ASPGR配体包含选自半乳糖或半乳糖衍生物(例如半乳糖胺、N-甲酰半乳糖胺、N-乙酰半乳糖胺(GalNAc)、N-丙酰半乳糖胺、N-正丁酰半乳糖胺、N-异丁酰半乳糖胺等)的部分。ASPGR配体可以具有或不具有连接基团(也称为“接头”)。In some embodiments, the ligand used for the RNAi activator of the present invention, such as the dsRNA activator, is an asialic acid glycoprotein receptor (ASPGR) ligand. Specifically, the ASPGR ligand comprises a moiety selected from galactose or galactose derivatives (e.g., galactosamine, N-formylgalactosamine, N-acetylgalactosamine (GalNAc), N-propionylgalactosamine, N-butyrylgalactosamine, N-isobutyrylgalactosamine, etc.). The ASPGR ligand may or may not have a linker group (also referred to as a "connector").
在本文中,当配体中的半乳糖衍生物是N-乙酰半乳糖胺(GalNAc)或GalNAc衍生物时,所述配体也称作GalNAc配体,涵盖能够提供1、2、3或4个GalNAc或GalNAc衍生物结构部分的单价、二价、三价或四价GalNAc配体。In this document, when the galactose derivative in the ligand is N-acetylgalactosamine (GalNAc) or a GalNAc derivative, the ligand is also referred to as a GalNAc ligand, encompassing monovalent, divalent, trivalent, or tetravalent GalNAc ligands capable of providing 1, 2, 3, or 4 structural moieties of GalNAc or GalNAc derivatives.
在一些实施方案中,在本发明的dsRNA寡核苷酸与含有半乳糖衍生物(例如GalNAc)作为靶向基团的配体形成的dsRNA活性剂中,dsRNA寡核苷酸与半乳糖衍生物(如GalNAc)的摩尔比可以为任何适宜的比例,例如1∶1。In some embodiments, in the dsRNA activator formed by the dsRNA oligonucleotide of the present invention and a ligand containing a galactose derivative (e.g., GalNAc) as a targeting group, the molar ratio of the dsRNA oligonucleotide to the galactose derivative (e.g., GalNAc) can be any suitable ratio, for example, 1:1.
在一些实施方案中,本发明的dsRNA活性剂包括与dsRNA的寡核苷酸连接的GalNAc或GalNAc衍生物。在某些实施方案中,本发明的dsRNA活性剂包括1个或多个(例如,2个、3个、4个、5个或6个)GalNAc或GalNAc衍生物,每个所述GalNAc或GalNAc衍生物通过多个单价接头独立地与dsRNA活性剂的多个核苷酸连接。In some embodiments, the dsRNA activator of the present invention comprises GalNAc or GalNAc derivatives linked to an oligonucleotide of dsRNA. In some embodiments, the dsRNA activator of the present invention comprises one or more (e.g., two, three, four, five, or six) GalNAc or GalNAc derivatives, each of which is independently linked to multiple nucleotides of the dsRNA activator via multiple monovalent linkers.
在一些实施方案中,所述配体是N-乙酰基半乳糖胺(GalNAc)衍生物。在一些实施方案中,所述配体是通过单价、二价或三价分支接头连接的一种或多种GalNAc衍生物。在一些实施方案中,所述dsRNA例如其核苷酸通过磷酸酯基团或硫代磷酸酯基团与包含N-乙酰半乳糖胺的配体部分缀合。在一些实施方案中,所述配体与所述dsRNA活性剂的所述正义链和/或反义链的5’末端或3’末端缀合。In some embodiments, the ligand is an N-acetylgalactosamine (GalNAc) derivative. In some embodiments, the ligand is one or more GalNAc derivatives linked via monovalent, divalent, or trivalent branched linkers. In some embodiments, the dsRNA, for example, its nucleotides, are conjugated to a ligand portion containing N-acetylgalactosamine via a phosphate ester group or a thiophosphate ester group. In some embodiments, the ligand is conjugated to the 5' or 3' end of the sense and/or antisense strand of the dsRNA activator.
在一些实施方案中,本发明的RNAi活性剂例如dsRNA活性剂包括一个或多个GalNAc或GalNAc衍生物作为配体。所述GalNAc或GalNAc衍生物可以通过连接基团、例如二价、三价或四价分支点连接基团连接到所述RNAi的寡核苷酸上。在一些实施方案中,所述配体与所述dsRNA活性剂的所述正义链和/或反义链的5’末端或3’末端缀合。在一些实施方案中,GalNAc配体与RNAi的正义链的3’端缀合。在一些实施方案中,GalNAc配体通过连接基团连接到RNAi的寡核苷酸正义链的3’末端。在一些实施方案中,GalNAc配体与正义链的5’端结合。在一些实施方案中,GalNAc配体通过连接基团连接到RNAi的寡核苷酸正义链的5’末端。在一些实施方案中,GalNAc配体与反义链的3’端结合。在一些实施方案中,GalNAc配体通过连接基团连接到RNAi反义链的寡核苷酸的3’末端。在一些实施方案中,GalNAc或GalNAc衍生物通过二价连接基团连接到本发明的RNAi的寡核苷酸上。在另一些实施方案中,GalNAc或GalNAc衍生物通过三价连接基团连接到本发明的RNAi的寡核苷酸上。在另一些实施方案中,GalNAc或GalNAc衍生物通过四价连接基团连接到本发明的RNAi的寡核苷酸上。In some embodiments, the RNAi activator of the present invention, such as the dsRNA activator, comprises one or more GalNAc or GalNAc derivatives as ligands. The GalNAc or GalNAc derivative can be linked to the oligonucleotide of the RNAi via a linker group, such as a divalent, trivalent, or tetravalent branching point linker group. In some embodiments, the ligand is conjugated to the 5' or 3' end of the sense and/or antisense strand of the dsRNA activator. In some embodiments, the GalNAc ligand is conjugated to the 3' end of the sense strand of the RNAi. In some embodiments, the GalNAc ligand is linked to the 3' end of the sense strand of the RNAi oligonucleotide via a linker group. In some embodiments, the GalNAc ligand binds to the 5' end of the sense strand. In some embodiments, the GalNAc ligand is linked to the 5' end of the sense strand of the RNAi oligonucleotide via a linker group. In some embodiments, the GalNAc ligand binds to the 3' end of the antisense strand. In some embodiments, the GalNAc ligand is linked to the 3' end of the antisense strand of the RNAi oligonucleotide via a linker group. In some embodiments, GalNAc or a GalNAc derivative is linked to the oligonucleotide of the RNAi of the present invention via a divalent linker. In other embodiments, GalNAc or a GalNAc derivative is linked to the oligonucleotide of the RNAi of the present invention via a trivalent linker. In still other embodiments, GalNAc or a GalNAc derivative is linked to the oligonucleotide of the RNAi of the present invention via a tetravalent linker.
在一些实施方案中,GalNAc或GalNAc衍生物中的一个或多个可以以独立于其他任何GalNAc或GalNAc衍生物的方式经由连接基团单独地连接在RNAi寡核苷酸上。在一些实施方案中,GalNAc或GalNAc衍生物中的任意两个或更多个可以以串联成簇的形式经由一个共同的连接基团部分连接到RNAi的寡核苷酸上。此外,包括以独立的形式和/或以串联成簇的形式连接在其上的多个GalNAc或GalNAc衍生物的dsRNA活性剂也包括在本发明中。在一些实施方案中,所述dsRNA的寡核苷酸通过磷酸酯基团或硫代磷酸酯基团与包含N-乙酰半乳糖胺的配体部分缀合。In some embodiments, one or more of GalNAc or GalNAc derivatives may be individually linked to the RNAi oligonucleotide via a linker group, independent of any other GalNAc or GalNAc derivative. In some embodiments, any two or more of GalNAc or GalNAc derivatives may be linked to the RNAi oligonucleotide in a tandem cluster via a common linker group moiety. Furthermore, dsRNA activators comprising multiple GalNAc or GalNAc derivatives linked thereto, either independently or in a tandem cluster, are also included in this invention. In some embodiments, the dsRNA oligonucleotide is conjugated to a ligand moiety comprising N-acetylgalactosamine via a phosphate ester group or a thiophosphate ester group.
在一些实施方案中,所述配体是脂质或基于脂质的分子。在一个实施例中,此类脂质或基于脂质的分子与血清蛋白,例如人血清白蛋白(HSA)结合。HSA结合配体允许缀合物分布到靶组织,例如身体的非肾靶组织。例如,靶组织可以是肝,包含肝的实质细胞。可以与HSA结合的其它分子也可以用作配体。例如,可以使用萘普生或阿司匹林。脂质或基于脂质的配体可以(a)增加对缀合物降解的抗性,(b)增加靶向或转运到靶细胞或细胞膜中,或(c)可以用于调节与血清蛋白(例如HSA)的结合。在一些实施方案中,所述配体是脂质纳米颗粒例如LNP。示例性的LNP递送系统例如DLin-DMA、DLin-MC3-DMA、L319、PNP(peptide nanoparticles)递送平台、EDV(EnGeneIC Dream Vector)内源输送载体纳米细胞平台。In some embodiments, the ligand is a lipid or lipid-based molecule. In one embodiment, such a lipid or lipid-based molecule binds to a serum protein, such as human serum albumin (HSA). The HSA-binding ligand allows the conjugate to be distributed to a target tissue, such as a non-renal target tissue of the body. For example, the target tissue could be the liver, containing hepatic parenchymal cells. Other molecules that can bind to HSA can also be used as ligands. For example, naproxen or aspirin can be used. Lipids or lipid-based ligands can (a) increase resistance to conjugate degradation, (b) increase targeting or transport to target cells or cell membranes, or (c) be used to modulate binding to serum proteins (e.g., HSA). In some embodiments, the ligand is a lipid nanoparticle, such as a lipid nanoparticle (LNP). Exemplary LNP delivery systems include DLin-DMA, DLin-MC3-DMA, L319, PNP (peptide nanoparticles) delivery platforms, and the EDV (EnGeneIC Dream Vector) endogenous delivery carrier nanocell platform.
在一些实施方案中,还可以应用抗体作为配体用于递送dsRNA,例如抗体寡核苷酸偶联药物(AOC)。In some implementations, antibodies can also be used as ligands for the delivery of dsRNA, such as antibody-oligonucleotide conjugates (AOCs).
在一些实施方案中,还可以应用聚合物基质共聚递送dsRNA,例如LODER(LOcal Drug EluteR)递送平台。In some implementations, polymer matrix copolymerization can also be used to deliver dsRNA, such as the LODER (Local Drug EluteR) delivery platform.
在一些实施方案中,适用于本发明的dsRNA活性剂的配体连接到本发明dsRNA寡核苷酸的正义链的5’和/或3’末端核苷酸以及任选地反义链的5’和/或3’末端核苷酸,任选地,通过硫代磷酸酯基连接或磷酸酯基连接到所述的核苷酸。在一些实施方案中,所述dsRNA活性剂通过磷酸酯基团或硫代磷酸酯基团与所述配体缀合,例如所述硫代磷酸酯核苷酸间键位于正义链或反义链的3’末端处;或所述硫代磷酸酯核苷酸间键位于正义链或反义链的5’末端处;或者所述硫代磷酸酯核苷酸间键位于正义链的5’末端和3’末端两者处,和/或所述硫代磷酸酯核苷酸间键位于反义链的5’末端和3’末端处。In some embodiments, a ligand suitable for the dsRNA activator of the present invention is attached to the 5' and/or 3' terminal nucleotide of the sense strand and optionally the 5' and/or 3' terminal nucleotide of the antisense strand of the dsRNA oligonucleotide of the present invention, optionally via a phosphate thioester group or a phosphate ester group. In some embodiments, the dsRNA activator is conjugated to the ligand via a phosphate ester group or a phosphate thioester group, for example, the phosphate thioester nucleotide bond is located at the 3' end of the sense strand or antisense strand; or the phosphate thioester nucleotide bond is located at the 5' end of the sense strand or antisense strand; or the phosphate thioester nucleotide bond is located at both the 5' and 3' ends of the sense strand, and/or the phosphate thioester nucleotide bond is located at both the 5' and 3' ends of the antisense strand.
在一些情况下,本发明的配体也可以缀合在dsRNA的寡核苷酸的内部序列上。在一些实施方式中,所述配体可以连接在核苷酸的磷酸基团、2′-位羟基或者碱基上。在另一些实施方式中,所述配体可以连接在核苷酸的3′-位羟基上,此时核苷酸之间采用2′-5′磷酸二酯键连接。在一些实施方案中,当配体连接在dsRNA(如siRNA)核苷酸链的末端时,所述配体通常连接在核苷酸的磷酸基团上;当配体连接在dsRNA(如siRNA)核苷酸的内部序列上时,所述配体通常连接在核糖的糖环或者碱基上。In some cases, the ligands of the present invention can also be conjugated to the internal sequence of the oligonucleotide of dsRNA. In some embodiments, the ligand can be attached to the phosphate group, the 2′-hydroxyl group, or a base of the nucleotide. In other embodiments, the ligand can be attached to the 3′-hydroxyl group of the nucleotide, in which case the nucleotides are linked by a 2′-5′ phosphodiester bond. In some embodiments, when the ligand is attached to the end of the dsRNA (such as siRNA) nucleotide chain, the ligand is typically attached to the phosphate group of the nucleotide; when the ligand is attached to the internal sequence of the dsRNA (such as siRNA) nucleotide, the ligand is typically attached to the sugar ring of the ribose or a base.
本发明的配体可以与本发明dsRNA的核苷酸双链直接连接或通过连接部分(例如接头或连接基团,例如配体中所含的连接基团)连接。在一些实施方案中,所述接头是生物可切割的接头。在一些实施方案中,所述接头不必是生物可切割的。在一些实施方案中,接头可以包含分支区域。在本文中,术语“分支区域”意指,能够将两个或更多个实体共价偶联在一起的化合物部分。在一些实施方案中,具有分支区域的接头可以用来将多个实体如N-乙酰半乳糖胺部分缀合至本发明的dsRNA的寡核苷酸上。可用于此目的的具有分支区域的接头是本领域已知的,包括但不限于,氨基酸(包括天然氨基酸和非天然氨基酸)、肽及其衍生物、糖单元及其衍生物、芳香基取代的化合物及其衍生物、取代烃基及其衍生物、含有三氮唑的衍生物等。参见例如CN104651408A、CN113286888A、WO2015/173208和WO2023/076451。在本发明的一些实施方案中,当提及“配体”或“配体部分”时,其也可以是包含接头的配体或配体部分。The ligands of the present invention can be directly linked to the nucleotide double strand of the dsRNA of the present invention or linked via a linker portion (e.g., a adapter or linker group, such as a linker group contained in the ligand). In some embodiments, the adapter is a biocleavable adapter. In some embodiments, the adapter need not be biocleavable. In some embodiments, the adapter may include a branching region. Hereinafter, the term "branching region" means a compound portion capable of covalently coupling two or more entities together. In some embodiments, adapters having branching regions can be used to conjugate multiple entities, such as N-acetylgalactosamine moieties, to the oligonucleotide of the dsRNA of the present invention. Adapters having branching regions that can be used for this purpose are known in the art and include, but are not limited to, amino acids (including natural and non-natural amino acids), peptides and their derivatives, glycounits and their derivatives, aromatic-substituted compounds and their derivatives, substituted hydrocarbon groups and their derivatives, triazole-containing derivatives, etc. See, for example, CN104651408A, CN113286888A, WO2015/173208, and WO2023/076451. In some embodiments of the present invention, when referring to "ligand" or "ligand portion", it may also refer to a ligand or ligand portion that includes a connector.
在一些实施方案中,提供了包含与本发明dsRNA寡核苷酸连接的一个或多个(例如1个)配体的RNAi活性剂例如dsRNA活性剂,其中所述配体各自独立地具有式(I)的结构:
In some embodiments, an RNAi activator, such as a dsRNA activator, is provided comprising one or more (e.g., one) ligands linked to the dsRNA oligonucleotide of the present invention, wherein each ligand independently has the structure of formula (I):
其中,in,
Gal各自独立地表示末端半乳糖衍生物;Gal represents terminal galactose derivatives independently;
L表示接头;L indicates a connector;
n为选自1、2、3和4的整数;和n is an integer selected from 1, 2, 3, and 4; and
波浪线表示经由该价键与本发明dsRNA的寡核苷酸连接。可以理解,所述配体连接到本发明dsRNA的寡核苷酸的正义链和/或反义链的5’端和/或3’端,优选通过磷酸酯键或硫代磷酸酯键连接。The wavy line indicates the linking of the ligand to the oligonucleotide of the dsRNA of the present invention via this valence bond. It is understood that the ligand is linked to the 5' and/or 3' ends of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention, preferably via a phosphate ester bond or a thiophosphate ester bond.
在一些实施方案中,接头L可以具有或不具有分支部件。在一些实施方案中,分支部件可以呈现为二天线状、三天线状或其他的多分支形状。In some embodiments, the connector L may or may not have branching components. In some embodiments, the branching components may be in the form of two antennas, three antennas, or other multi-branched shapes.
在一些实施方案中,Gal各自以独立于其它Gal的方式经由接头L与本发明dsRNA的寡核苷酸连接。在一些实施方案中,Gal以串联成簇的形式经由接头L与本发明dsRNA的寡核苷酸连接。In some embodiments, each Gal is individually linked to the oligonucleotide of the dsRNA of the present invention via a linker L, independently of the other Gals. In some embodiments, Gals are linked to the oligonucleotide of the dsRNA of the present invention via linker L in a tandem cluster.
因此,在一些实施方案中,本发明的式(I)的配体各自独立地具有式(I-a)的结构:
Therefore, in some embodiments, the ligands of formula (I) of the present invention each independently have the structure of formula (Ia):
其中,in,
LA1表示用于将Gal部分连接到LA2部分的连接基; LA1 represents the connection base used to connect the Gal part to the LA2 part;
LA2表示2价、3价、4价或5价的接头,用于将n个Gal-LA1-部分连接至本发明RNAi; LA2 represents a bivalent, trivalent, quadrivalent, or pentavalent adapter used to link n Gal- LA1 portions to the RNAi of this invention;
Gal各自独立地表示末端半乳糖衍生物;和Gal independently represents terminal galactose derivatives; and
n为选自1、2、3和4的整数;和n is an integer selected from 1, 2, 3, and 4; and
波浪线表示经由该价键与本发明dsRNA的寡核苷酸连接。可以理解,所述配体连接到本发明dsRNA的寡核苷酸的正义链和/或反义链的5’端和/或3’端以及任选地反义链的3’端,优选通过磷酸酯键或硫代磷酸酯键连接。The wavy line indicates the oligonucleotide linked to the dsRNA of the present invention via this valence bond. It will be understood that the ligand is linked to the 5' and/or 3' ends of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention, and optionally the 3' end of the antisense strand, preferably via a phosphate ester bond or a thiophosphate ester bond.
在本发明的包含式(I)或其亚式如(I-a)的配体的dsRNA活性剂中,Gal各自独立地表示GalNAc(N-乙酰半乳糖胺)或GalNAc衍生物。在一些实施方案中,Gal各自独立地表示具有如下结构的半乳糖衍生物部分:
In the dsRNA activators of the present invention comprising formula (I) or its subforms such as (Ia), Gal independently represents GalNAc (N-acetylgalactosamine) or a GalNAc derivative. In some embodiments, Gal independently represents a galactose derivative moiety having the following structure:
其中,in,
R1各自独立地是H或羟基保护基, R1 is an H or hydroxyl protecting group,
R2选自氢、羟基、C1-20烷基、C2-20烯基、C1-20烷氧基、C1-20烷硫基、-NRaRb、C6-20芳基-C0-8亚烷基-O-、C6-20芳基-C0-8亚烷基-S-、和CH3O-(CH2CH2O)q-CH2CH2O-,其中Ra和Rb各自独立地是H或C1-20烷基,q表示1至16的整数,和其中所述芳基任选被一个或多个C1-8烷基取代;和 R2 is selected from hydrogen, hydroxyl, C1-20 alkyl, C2-20 alkenyl, C1-20 alkoxy, C1-20 alkylthio, -NRaRb, C6-20 aryl - C0-8 alkylene-O-, C6-20 aryl - C0-8 alkylene-S-, and CH3O- ( CH2CH2O ) q - CH2CH2O- , wherein Ra and Rb are each independently H or C1-20 alkyl, q represents an integer from 1 to 16, and wherein the aryl group is optionally substituted with one or more C1-8 alkyl groups; and
波浪形价键表示经由该价键与分子的其余部分连接。A wavy valence bond indicates that the bond is connected to the rest of the molecule.
在本文中,适宜的羟基保护基是本领域技术人员已知的,包括但不限于乙酰基(Ac)、苯甲酰基(Bz)、苯氧基乙酰基、特戊酰基、单甲氧基三苯甲基(MMTr)、二甲氧基三苯甲基(DMTr)、异丁酰基、叔丁基二甲基硅基、叔丁基二苯基硅基(TBDPS)、三异丙基硅基和异丙基二甲基硅基。In this document, suitable hydroxyl protecting groups are known to those skilled in the art, including but not limited to acetyl (Ac), benzoyl (Bz), phenoxyacetyl, tertvalyl, monomethoxytriphenylmethyl (MMTr), dimethoxytriphenylmethyl (DMTr), isobutyryl, tert-butyldimethylsilyl, tert-butyldiphenylsilyl (TBDPS), triisopropylsilyl and isopropyldimethylsilyl.
因此,在一些实施方案中,R1各自独立地是H、乙酰基(Ac)、苯甲酰基(Bz)、单甲氧基三苯甲基(MMTr)、二甲氧基三苯甲基(DMTr)或叔丁基二苯基硅基(TBDPS)。优选地,R1各自独立地是H、乙酰基(Ac)、苯甲酰基(Bz)、二甲氧基三苯甲基(DMTr)或叔丁基二苯基硅基(TBDPS)。在一些实施方案中,R1各自独立地是H或苯甲酰基(Bz)。在一些实施方案中,R1各自独立地是H。Therefore, in some embodiments, R1 is independently H, acetyl (Ac), benzoyl (Bz), monomethoxytriphenylmethyl (MMTr), dimethoxytriphenylmethyl (DMTr), or tert-butyldiphenylsilyl (TBDPS). Preferably, R1 is independently H, acetyl (Ac), benzoyl (Bz), dimethoxytriphenylmethyl (DMTr), or tert-butyldiphenylsilyl (TBDPS). In some embodiments, R1 is independently H or benzoyl (Bz). In some embodiments , R1 is independently H.
在一些实施方案中,R2各自独立地选自:氢、羟基、C1-6烷基、C2-6烯基、C1-16烷氧基(例如C1-6烷氧基)、C1-6烷硫基、-NRaRb、苯基-C0-4亚烷基-O-、苯基-C0-4亚烷基-S-、和CH3O-(CH2CH2O)q-CH2CH2O-,其中Ra和Rb各自独立地是H或C1-6烷基如C1-4烷基,q表示1至12的整数,和其中所述苯基任选被一个或多个C1-4烷基取代。在一些实施方案中,R2各自独立地是C1-16烷氧基,例如C1-6烷氧基。In some embodiments, R2 is independently selected from: hydrogen, hydroxyl, C1-6 alkyl, C2-6 alkenyl, C1-16 alkoxy (e.g., C1-6 alkoxy), C1-6 alkylthio, -NRaRb, phenyl- C0-4 alkylene-O-, phenyl- C0-4 alkylene-S-, and CH3O- ( CH2CH2O ) q - CH2CH2O- , wherein Ra and Rb are each independently H or C1-6 alkyl such as C1-4 alkyl, q represents an integer from 1 to 12 , and wherein the phenyl is optionally substituted with one or more C1-4 alkyl groups. In some embodiments, R2 is each independently C1-16 alkoxy, such as C1-6 alkoxy .
在一些实施方案中,R2各自独立地是H、OH、 In some implementations, R2 is independently H, OH,
优选地,R2各自独立地是OH、 更优选地,R2各自独立地是OH或特别是 Preferably, R2 is independently OH, More preferably, R2 is independently OH or in particular
在一些实施方案中,Gal各自独立地表示优选其中各变量如本文所定义,和波浪形价键表示经由该价键与分子其余部分连接。In some implementations, Gal is represented independently. Preferred The variables are defined as described in this paper, and the wavy valence bond represents the connection to the rest of the molecule via this valence bond.
在一些实施方案中,Gal各自独立地表示优选其中各变量如本文所定义,和波浪形价键表示经由该价键与分子其余部分连接。In some implementations, Gal is represented independently. Preferred The variables are defined as described in this paper, and the wavy valence bond represents the connection to the rest of the molecule via this valence bond.
在一些实施方案中,Gal各自独立地表示其中波浪形价键表示经由该价键与分子其余部分连接。In some implementations, Gal is represented independently. The wavy valence bond indicates that the valence bond is connected to the rest of the molecule.
在一些实施方案中,在式(I-a)中,LA1各自独立地表示具有如下结构的连接基:In some implementations, in equation (Ia), LA1 independently represents a linker having the following structure:
-(CH2)m1-C(O)-NH-(CH2)m2-NH-C(O)-(CH2)m3-;-(CH 2 ) m1 -C(O)-NH-(CH 2 ) m2 -NH-C(O)-(CH 2 ) m3 -;
-(CH2)m1-C(O)-NH-(CH2)m2-C(O)-NH-(CH2)m3-;-(CH 2 ) m1 -C(O)-NH-(CH 2 ) m2 -C(O)-NH-(CH 2 ) m3 -;
-(CH2)m1-NH-C(O)-(CH2)m2-NH-C(O)-(CH2)m3-;-(CH 2 ) m1 -NH-C(O)-(CH 2 ) m2 -NH-C(O)-(CH 2 ) m3 -;
-(CH2)m1-NH-C(O)-(CH2)m2-C(O)-NH-(CH2)m3-;-(CH 2 ) m1 -NH-C(O)-(CH 2 ) m2 -C(O)-NH-(CH 2 ) m3 -;
-(CH2)m1-O-(CH2)m2-NH-C(O)-(CH2)m3-;-(CH 2 ) m1 -O-(CH 2 ) m2 -NH-C(O)-(CH 2 ) m3 -;
-(CH2CH2O)m4-(CH2)m2-NH-C(O)-(CH2)m3-;-(CH 2 CH 2 O) m4 -(CH 2 ) m2 -NH-C(O)-(CH 2 ) m3 -;
其中,m1、m2、m3和m4各自独立地是1、2、3、4、5、6、7或8;和其中所述基团的左侧与Gal连接,右侧与分子其余部分连接。Wherein, m1, m2, m3 and m4 are each independently 1, 2, 3, 4, 5, 6, 7 or 8; and the left side of the group is connected to Gal, and the right side is connected to the rest of the molecule.
在一些实施方案中,m1优选为3、4、5、6、7或8,更优选3、4、5或6,最优选4。In some implementations, m1 is preferably 3, 4, 5, 6, 7 or 8, more preferably 3, 4, 5 or 6, and most preferably 4.
在一些实施方案中,m2优选为1、2、3、4、5或6,更优选1、2或3。In some implementations, m2 is preferably 1, 2, 3, 4, 5 or 6, more preferably 1, 2 or 3.
在一些实施方案中,m3优选为1、2、3、4、5或6,更优选1、2或3,最优选2。In some implementations, m3 is preferably 1, 2, 3, 4, 5 or 6, more preferably 1, 2 or 3, and most preferably 2.
在一些实施方案中,m4优选为1、2、3、4、5或6,更优选1、2、3或4,最优选1或3。In some implementations, m4 is preferably 1, 2, 3, 4, 5 or 6, more preferably 1, 2, 3 or 4, and most preferably 1 or 3.
在一些实施方案中,LA1各自独立地表示选自如下的连接基:
In some implementations, LA1 independently represents a linker selected from the following:
其中,m1、m2和m4各自独立地是1、2、3、4、5、6、7或8;和其中所述基团的1位与Gal连接,2位与分子其余部分连接。Wherein, m1, m2 and m4 are each independently 1, 2, 3, 4, 5, 6, 7 or 8; and wherein the 1 position of the group is connected to Gal, and the 2 position is connected to the rest of the molecule.
在一些实施方案中,LA1各自独立地表示选自如下的连接基:
In some implementations, LA1 independently represents a linker selected from the following:
优选是 Preferred is
其中所述基团的1位与Gal连接,2位与分子其余部分连接。The group is connected to Gal at position 1 and to the rest of the molecule at position 2.
在一些实施方案中,LA2表示包含单羟甲基甲烷、二羟甲基甲烷或三羟甲基甲烷构件的2价、3价或4价接头,其中所述LA2经由羟甲基中的氧原子与LA1部分通过醚键连接,并且经由甲烷碳原子(直接或间接)连接至本发明的dsRNA的寡核苷酸。In some embodiments, LA2 represents a divalent, trivalent, or tetravalent linker comprising a monohydroxymethylmethane, dihydroxymethylmethane, or trihydroxymethylmethane member, wherein the LA2 is linked to the LA1 portion via an ether bond through an oxygen atom in the hydroxymethyl group and is linked (directly or indirectly) to the dsRNA of the present invention via a methane carbon atom.
在一些实施方案中,LA2表示具有选自如下结构的接头:
In some implementations, LA2 indicates a connector having a structure selected from the following:
其中LA3表示不存在或表示间隔基;所述基团左侧的氧原子与LA1部分通过醚键连接,右侧与本发明dsRNA的寡核苷酸连接。标识星号的碳原子可以被视为是LA2部分的分支点。Wherein LA3 indicates absence or represents a spacer group; the oxygen atom on the left side of the group is connected to the LA1 portion via an ether bond, and the right side is connected to the oligonucleotide of the dsRNA of this invention. The carbon atom marked with an asterisk can be regarded as a branch point of the LA2 portion.
在一些实施方案中,LA3表示具有如下结构的间隔基:In some implementations, LA3 represents a spacer base having the following structure:
优选 Preferred
其中,q是选自1至16的整数,例如是1、2、3、4、5、6、7、8、9、10、11、12、13、14、15、16;优选地,q是选自1至12的整数,例如选自8至12的整数;所述基团的1位与LA2部分中的分支点连接,2位与本发明dsRNA的寡核苷酸连接,例如通过磷酸酯键或硫代磷酸酯键连接。Wherein, q is an integer selected from 1 to 16, for example, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16; preferably, q is an integer selected from 1 to 12, for example, an integer selected from 8 to 12; the 1st position of the group is connected to the branch point in the LA2 portion, and the 2nd position is connected to the oligonucleotide of the dsRNA of the present invention, for example, through a phosphate ester bond or a thiophosphate bond.
在一些实施方案中,LA3表示具有如下结构的间隔基:In some implementations, LA3 represents a spacer base having the following structure:
优选 Preferred
其中,所述基团的1位与LA2部分中的分支点连接,2位与本发明dsRNA的寡核苷酸连接,例如通过磷酸酯键或硫代磷酸酯键连接。The group is connected at position 1 to a branch point in the LA2 portion and at position 2 to an oligonucleotide of the dsRNA of the present invention, for example, via a phosphate ester bond or a thiophosphate ester bond.
在一些实施方案中,式(I)或(I-a)的配体各自独立地具有式(Ia-i)的结构:
In some implementations, the ligands of formula (I) or (Ia) each independently have the structure of formula (Ia-i):
其中,各变量如本文所定义,例如式(I)或(I-a)中所定义;波浪线表示经由该价键与dsRNA的寡核苷酸连接。可以理解,所述配体连接到本发明dsRNA的寡核苷酸的正义链和/或反义链的5’端和/或3’端,优选通过磷酸酯键或硫代磷酸酯键连接。在一项优选的实施方案中,R1各自独立地是H;m1和m2各自独立地是1、2、3、4、5、6、7或8,优选3或4;q是选自1至16的整数,优选是选自1至12的整数,更优选8至12的整数,例如8、9、10、11或12。In this document, each variable is defined as such, for example, as defined in formula (I) or (Ia); the wavy line indicates the oligonucleotide linked to the dsRNA via the valence bond. It is understood that the ligand is linked to the 5' and/or 3' ends of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention, preferably via a phosphate ester bond or a thiophosphate ester bond. In a preferred embodiment, R1 is independently H; m1 and m2 are independently 1, 2, 3, 4, 5, 6, 7, or 8, preferably 3 or 4; q is an integer selected from 1 to 16, preferably an integer selected from 1 to 12, more preferably an integer from 8 to 12, such as 8, 9, 10, 11, or 12.
特别地,式(I)或(I-a)的配体各自独立地是具有如下结构的L96部分:
In particular, the ligands of formula (I) or (Ia) are each independently an L96 moiety having the following structure:
其中波浪线表示经由该价键与dsRNA的寡核苷酸连接。可以理解,所述配体连接到本发明dsRNA的寡核苷酸的正义链和/或反义链的5’端和/或3’端,优选通过磷酸酯键或硫代磷酸酯键连接。在一些实施方案中,所述配体连接到本发明dsRNA的寡核苷酸的正义链的3’端。The wavy line indicates the linking of the ligand to the oligonucleotide of the dsRNA via this valence bond. It is understood that the ligand is linked to the 5' and/or 3' ends of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention, preferably via a phosphate ester bond or a thiophosphate ester bond. In some embodiments, the ligand is linked to the 3' end of the sense strand of the oligonucleotide of the dsRNA of the present invention.
在一些实施方案中,具有式(Ia-i)的配体的本发明dsRNA活性剂如下所示:
In some embodiments, the dsRNA activators of the present invention having ligands of formula (Ia-i) are shown below:
其中,表示本文所述的dsRNA的寡核苷酸双链,3’表示RNAi正义链的3’端,X表示氧或硫,且其它变量如本文所定义。in, The '3' represents the oligonucleotide double strand of the dsRNA described herein, '3' represents the 3' end of the RNAi positive strand, X represents oxygen or sulfur, and other variables are as defined herein.
特别地,具有L96结构的配体的本发明的dsRNA活性剂如下所示:
In particular, the dsRNA activator of the present invention having a ligand with an L96 structure is shown below:
其中,表示本文所述的dsRNA的寡核苷酸双链,3’表示dsRNA的寡核苷酸正义链的3’端,X表示氧或硫。in, The '3' represents the oligonucleotide double strand of the dsRNA described herein, '3' represents the 3' end of the positive strand of the oligonucleotide of the dsRNA, and 'X' represents oxygen or sulfur.
在一些实施方案中,在本发明的dsRNA活性剂中,所dsRNA寡核苷酸双链连接一个ASPGR配体,其中所述ASPGR配体具有选自式(I)或其任意亚式的任意结构,例如选自(I-a)、(Ia-i)或L96中任一者的结构,并且所述ASPGR配体连接到本发明dsRNA的寡核苷酸正义链和/或反义链的5’端或3’端。优选地,所述配体通过磷酸酯键或硫代磷酸酯键连接。In some embodiments, in the dsRNA activator of the present invention, the dsRNA oligonucleotide duplex is linked to an ASPGR ligand, wherein the ASPGR ligand has any structure selected from formula (I) or any subform thereof, for example, a structure selected from (I-a), (Ia-i), or L96, and the ASPGR ligand is linked to the 5' or 3' end of the sense and/or antisense strands of the oligonucleotide of the dsRNA of the present invention. Preferably, the ligand is linked via a phosphate ester bond or a thiophosphate ester bond.
在一些实施方案中,在本发明的dsRNA活性剂中,所dsRNA寡核苷酸双链连接一个ASPGR配体,其中所述ASGPR配体具有式(I-a)、优选式(Ia-i)、更优选L96的结构,并且所述ASGPR配体连接到本发明dsRNA的寡核苷酸正义链的3’端。优选地,所述配体通过磷酸酯键或硫代磷酸酯键连接。In some embodiments, in the dsRNA activator of the present invention, the dsRNA oligonucleotide duplex is linked to an ASPGR ligand, wherein the ASPGR ligand has a structure of formula (I-a), preferably (Ia-i), more preferably L96, and the ASPGR ligand is linked to the 3' end of the sense strand of the oligonucleotide of the dsRNA of the present invention. Preferably, the ligand is linked via a phosphate ester bond or a thiophosphate ester bond.
在一些实施方案中,所述配体是L96,可参见例如WO2009073809和WO2009082607,其以全文引用的方式并入本文。In some embodiments, the ligand is L96, see, for example, WO2009073809 and WO2009082607, which are incorporated herein by reference in their entirety.
在一些实施方案中,在本发明的dsRNA活性剂中,所dsRNA寡核苷酸双链连接具有GalNac配体,例如具有L96结构的配体,并且所述配体连接到本发明dsRNA的寡核苷酸正义链的3’端,其中所述配体通过磷酸酯键或硫代磷酸酯键(优选地磷酸酯键)连接。In some embodiments, in the dsRNA activator of the present invention, the dsRNA oligonucleotide double strand is linked to a GalNac ligand, such as a ligand having an L96 structure, and the ligand is linked to the 3' end of the sense strand of the oligonucleotide of the dsRNA of the present invention, wherein the ligand is linked by a phosphate ester bond or a thiophosphate ester bond (preferably a phosphate ester bond).
在一些实施方案中,dsRNA活性剂中的反义链包含说明书表2中反义链中的任一个经修饰的核苷酸序列,和/或所述正义链包含说明书表2中正义链中的任一个经修饰的核苷酸序列,其中所述正义链在3’端缀合一个本发明的配体,例如ASGPR配体或GalNac配体,其例如具有式(I-a)、优选式(Ia-i)、更优选L96的结构,优选地,所述配体通过磷酸酯键或硫代磷酸酯键连接。In some embodiments, the antisense strand of the dsRNA activator comprises any modified nucleotide sequence of the antisense strand in Table 2 of the specification, and/or the sense strand comprises any modified nucleotide sequence of the sense strand in Table 2 of the specification, wherein the sense strand is conjugated at the 3' end to a ligand of the present invention, such as an ASGPR ligand or a GalNac ligand, having, for example, the structure of formula (I-a), preferably formula (Ia-i), more preferably L96, and preferably, the ligand is linked by a phosphate ester bond or a thiophosphate bond.
在一些实施方案中,dsRNA活性剂中的反义链和正义链的组合如表2中所示的反义链和正义链的任何组合所示,其中所述正义链在3’端缀合一个本发明GalNac配体,其例如具有L96的结构,优选地,所述配体通过磷酸酯键或硫代磷酸酯键连接。In some embodiments, the combination of antisense and sense strands in the dsRNA activator is shown in Table 2 as any combination of antisense and sense strands, wherein the sense strand is conjugated at the 3' end to a GalNac ligand of the present invention, which has, for example, an L96 structure, and preferably, the ligand is linked by a phosphate ester bond or a thiophosphate ester bond.
在一些实施方案中,所述dsRNA活性剂是表2中所示的任何dsRNA活性剂,且其中所述正义链在3’端缀合一个本发明GalNac配体,其例如具有L96的结构,优选地,所述配体通过磷酸酯键或硫代磷酸酯键连接。In some embodiments, the dsRNA activator is any of the dsRNA activators shown in Table 2, and wherein the positive strand is conjugated at the 3' end with a GalNac ligand of the present invention, which has, for example, an L96 structure, and preferably, the ligand is linked by a phosphate ester bond or a thiophosphate ester bond.
在一些实施方案中,dsRNA活性剂中的反义链包含说明书表3中反义链中的任一个经修饰的核苷酸序列,和/或所述正义链包含说明书表3中正义链中的在3’端经由磷酸酯键缀合有L96结构配体的任一个经修饰的核苷酸序列。In some embodiments, the antisense strand of the dsRNA activator comprises any modified nucleotide sequence of the antisense strand in Table 3 of the specification, and/or the sense strand comprises any modified nucleotide sequence of the sense strand in Table 3 of the specification that is conjugated to an L96 structural ligand at the 3' end via a phosphate ester bond.
在一些实施方案中,dsRNA活性剂中的反义链和正义链的组合如表3中所示的反义链和正义链的任何组合所示。In some implementations, the combination of the antisense and sense strands in the dsRNA activator is shown in Table 3 as any combination of antisense and sense strands.
在一些实施方案中,所述dsRNA活性剂是表3中所示的任何dsRNA活性剂。In some embodiments, the dsRNA activator is any of the dsRNA activators shown in Table 3.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中所述正义链和反义链分别包含SEQ ID NO:551/441、SEQ ID NO:552/442、SEQ ID NO:553/443、SEQ ID NO:554/444、SEQ ID NO:555/445、SEQ ID NO:556/446、SEQ ID NO:557/447、SEQ ID NO:558/448、SEQ ID NO:559/449、SEQ ID NO:560/450、SEQ ID NO:561/451、SEQ ID NO:562/452、SEQ ID NO:563/453、SEQ ID NO:564/454、SEQ ID NO:565/455、SEQ ID NO:566/456、SEQ ID NO:567/457、SEQ ID NO:568/458、SEQ ID NO:569/459、SEQ ID NO:570/460、SEQ ID NO:571/461、SEQ ID NO:572/462、SEQ ID NO:573/463、SEQ ID NO:574/464、SEQ ID NO:575/465、SEQ ID NO:576/466、SEQ ID NO:577/467、SEQ ID NO:578/468、SEQ ID NO:579/469、SEQ ID NO:580/470、SEQ ID NO:581/471、SEQ ID NO:582/472、SEQ ID NO:583/473、SEQ ID NO:584/474、SEQ ID NO:585/475、SEQ ID NO:586/476、SEQ ID NO:587/477、SEQ ID NO:588/478、SEQ ID NO:589/479、SEQ ID NO:590/480、SEQ ID NO:591/481、SEQ ID NO:592/482、SEQ ID NO:593/483、SEQ ID NO:594/484、SEQ ID NO:595/485、SEQ ID NO:596/486、SEQ ID NO:597/487、SEQ ID NO:598/488、SEQ ID NO:599/489、SEQ ID NO:600/490、SEQ ID NO:601/491、SEQ ID NO:602/492、SEQ ID NO:603/493、SEQ ID NO:604/494、SEQ ID NO:605/495、SEQ ID NO:606/496、SEQ ID NO:607/497、SEQ ID NO:608/498、SEQ ID NO:609/499、SEQ ID NO:610/500、SEQ ID NO:611/501、SEQ ID NO:612/502、SEQ ID NO:613/503、SEQ ID NO:614/504、SEQ ID NO:615/505、SEQ ID NO:616/506、SEQ ID NO:617/507、SEQ ID NO:618/508、SEQ ID NO:619/509、SEQ ID NO:620/510、SEQ ID NO:621/511、SEQ ID NO:622/512、SEQ ID NO:623/513、SEQ ID NO:624/514、SEQ ID NO:625/515、SEQ ID NO:626/516、SEQ ID NO:627/517、SEQ ID NO:628/518、SEQ ID NO:629/519、SEQ ID NO:630/520、SEQ ID NO:631/521、SEQ ID NO:632/522、SEQ ID NO:633/523、SEQ ID NO:634/524、SEQ ID NO:635/525、SEQ ID NO:636/526、SEQ ID NO:637/527、SEQ ID NO:638/528、SEQ ID NO:639/529、SEQ ID NO:640/530、SEQ ID NO:641/531、SEQ ID NO:642/532、SEQ ID NO:643/533、SEQ ID NO:644/534、SEQ ID NO:645/535、SEQ ID NO:646/536、SEQ ID NO:647/537、SEQ ID NO:648/538、SEQ ID NO:649/539、SEQ ID NO:650/540、SEQ ID NO:651/541、SEQ ID NO:652/542、SEQ ID NO:653/543、SEQ ID NO:654/544、SEQ ID NO:655/545、SEQ ID NO:656/546、SEQ ID NO:657/547、SEQ ID NO:658/548、SEQ ID NO:659/549、SEQ ID NO:660/550或SEQ ID NO:663/662所示的核苷酸序列中的至少15、16、17、18或19个连续的经修饰的核苷酸,其中所述正义链的经修饰的核苷酸在3’末端是Um或Am,且经由磷酸酯键与L96连接,任选地所述反义链还具有1或2个核苷酸的3’突出端,任选地所述反义链在5’端第一个核苷酸为修饰的A或U,例如经修饰的U,例如Um或Am。In some specific embodiments, the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and antisense strand respectively comprise SEQ ID NO:551/441, SEQ ID NO:552/442, SEQ ID NO:553/443, SEQ ID NO:554/444, SEQ ID NO:555/445, SEQ ID NO:556/446, SEQ ID NO:557/447, SEQ ID NO:558/448, SEQ ID NO:559/449, SEQ ID NO:560/450, SEQ ID NO:561/451, SEQ ID NO:562/452, SEQ ID NO: 563/453、SEQ ID NO:564/454、SEQ ID NO:565/455、SEQ ID NO:566/456、SEQ ID NO:567/457、SEQ ID NO:568/458、SEQ ID NO:569/459、SEQ ID NO:570/460、SEQ ID NO:571/461、SEQ ID NO:572/462、SEQ ID NO:573/463、SEQ ID NO:574/464、SEQ ID NO:575/465、SEQ ID NO:576/466、SEQ ID NO:577/467、SEQ ID NO:578/ 468. SEQ ID NO:579/469, SEQ ID NO:580/470, SEQ ID NO:581/471, SEQ ID NO:582/472, SEQ ID NO:583/473, SEQ ID NO:584/474, SEQ ID NO:585/475, SEQ ID NO:586/476、SEQ ID NO:587/477、SEQ ID NO:588/478、SEQ ID NO:589/479、SEQ ID NO:590/480、SEQ ID NO:591/481、SEQ ID NO:592/482、SEQ ID NO:593/483、 SEQ ID NO:594/484、SEQ ID NO:595/485、SEQ ID NO:596/486、SEQ ID NO:597/487、SEQ ID NO:598/488、SEQ ID NO:599/489、SEQ ID NO:600/490、SEQ ID NO:6 01/491、SEQ ID NO:602/492、SEQ ID NO:603/493、SEQ ID NO:604/494、SEQ ID NO:605/495、SEQ ID NO:606/496、SEQ ID NO:607/497、SEQ ID NO:608/498、SEQ ID NO:609/499、SEQ ID NO:610/500、SEQ ID NO:611/501、SEQ ID NO:612/502、SEQ ID NO:613/503、SEQ ID NO:614/504、SEQ ID NO:615/505、SEQ ID NO:616/ 506. SEQ ID NO:617/507, SEQ ID NO:618/508, SEQ ID NO:619/509, SEQ ID NO:620/510, SEQ ID NO:621/511, SEQ ID NO:622/512, SEQ ID NO:623/513, SEQ ID NO:624/514、SEQ ID NO:625/515、SEQ ID NO:626/516、SEQ ID NO:627/517、SEQ ID NO:628/518、SEQ ID NO:629/519、SEQ ID NO:630/520、SEQ ID NO:631/521、 SEQ ID NO:632/522、SEQ ID NO:633/523、SEQ ID NO:634/524、SEQ ID NO:635/525、SEQ ID NO:636/526、SEQ ID NO:637/527、SEQ ID NO:638/528、SEQ ID NO:6 39/529、SEQ ID NO:640/530、SEQ ID NO:641/531、SEQ ID NO:642/532、SEQ ID NO:643/533、SEQ ID NO:644/534、SEQ ID NO:645/535、SEQ ID NO:646/536、SEQ ID NO:647/537、SEQ ID NO:648/538、SEQ ID NO:649/539、SEQ ID NO:650/540、SEQ ID NO:651/541、SEQ ID NO:652/542、SEQ ID NO:653/543、SEQ ID NO:654/5 44. At least 15, 16, 17, 18, or 19 consecutive modified nucleotides in the nucleotide sequences shown in SEQ ID NO:655/545, SEQ ID NO:656/546, SEQ ID NO:657/547, SEQ ID NO:658/548, SEQ ID NO:659/549, SEQ ID NO:660/550, or SEQ ID NO:663/662, wherein the modified nucleotide of the sense strand is Um or Am at the 3' end and is linked to L96 via a phosphate ester bond, optionally the antisense strand also having a 3' overhang of 1 or 2 nucleotides, optionally the first nucleotide at the 5' end of the antisense strand is a modified A or U, such as a modified U, such as Um or Am.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中所述正义链和反义链分别包含SEQ ID NO:551/441、SEQ ID NO:552/442、SEQ ID NO:553/443、SEQ ID NO:554/444、SEQ ID NO:555/445、SEQ ID NO:556/446、SEQ ID NO:557/447、SEQ ID NO:558/448、SEQ ID NO:559/449、SEQ ID NO:560/450、SEQ ID NO:561/451、SEQ ID NO:562/452、SEQ ID NO:563/453、SEQ ID NO:564/454、SEQ ID NO:565/455、SEQ ID NO:566/456、SEQ ID NO:567/457、SEQ ID NO:568/458、SEQ ID NO:569/459、SEQ ID NO:570/460、SEQ ID NO:571/461、SEQ ID NO:572/462、SEQ ID NO:573/463、SEQ ID NO:574/464、SEQ ID NO:575/465、SEQ ID NO:576/466、SEQ ID NO:577/467、SEQ ID NO:578/468、SEQ ID NO:579/469、SEQ ID NO:580/470、SEQ ID NO:581/471、SEQ ID NO:582/472、SEQ ID NO:583/473、SEQ ID NO:584/474、SEQ ID NO:585/475、SEQ ID NO:586/476、SEQ ID NO:587/477、SEQ ID NO:588/478、SEQ ID NO:589/479、SEQ ID NO:590/480、SEQ ID NO:591/481、SEQ ID NO:592/482、SEQ ID NO:593/483、SEQ ID NO:594/484、SEQ ID NO:595/485、SEQ ID NO:596/486、SEQ ID NO:597/487、SEQ ID NO:598/488、SEQ ID NO:599/489、SEQ ID NO:600/490、SEQ ID NO:601/491、SEQ ID NO:602/492、SEQ ID NO:603/493、SEQ ID NO:604/494、SEQ ID NO:605/495、SEQ ID NO:606/496、SEQ ID NO:607/497、SEQ ID NO:608/498、SEQ ID NO:609/499、SEQ ID NO:610/500、SEQ ID NO:611/501、SEQ ID NO:612/502、SEQ ID NO:613/503、SEQ ID NO:614/504、SEQ ID NO:615/505、SEQ ID NO:616/506、SEQ ID NO:617/507、SEQ ID NO:618/508、SEQ ID NO:619/509、SEQ ID NO:620/510、SEQ ID NO:621/511、SEQ ID NO:622/512、SEQ ID NO:623/513、SEQ ID NO:624/514、SEQ ID NO:625/515、SEQ ID NO:626/516、SEQ ID NO:627/517、SEQ ID NO:628/518、SEQ ID NO:629/519、SEQ ID NO:630/520、SEQ ID NO:631/521、SEQ ID NO:632/522、SEQ ID NO:633/523、SEQ ID NO:634/524、SEQ ID NO:635/525、SEQ ID NO:636/526、SEQ ID NO:637/527、SEQ ID NO:638/528、SEQ ID NO:639/529、SEQ ID NO:640/530、SEQ ID NO:641/531、SEQ ID NO:642/532、SEQ ID NO:643/533、SEQ ID NO:644/534、SEQ ID NO:645/535、SEQ ID NO:646/536、SEQ ID NO:647/537、SEQ ID NO:648/538、SEQ ID NO:649/539、SEQ ID NO:650/540、SEQ ID NO:651/541、SEQ ID NO:652/542、SEQ ID NO:653/543、SEQ ID NO:654/544、SEQ ID NO:655/545、SEQ ID NO:656/546、SEQ ID NO:657/547、SEQ ID NO:658/548、SEQ ID NO:659/549、SEQ ID NO:660/550或SEQ ID NO:663/662所示的经修饰的核苷酸序列或分别由所示的经修饰的核苷酸序列组成,其中SEQ ID Nos:551-663任一项所示的正义链核苷酸序列的3’端经由磷酸酯键缀合有L96结构配体。In some specific embodiments, the dsRNA activator comprises a sense strand and an antisense strand, wherein the sense strand and the antisense strand respectively comprise SEQ ID NO:551/441, SEQ ID NO:552/442, SEQ ID NO:553/443, SEQ ID NO:554/444, SEQ ID NO:555/445, SEQ ID NO:556/446, SEQ ID NO:557/447, SEQ ID NO:558/448, SEQ ID NO:559/449, SEQ ID NO:560/450, SEQ ID NO:561/451, SEQ ID NO:562/452 ...0/450, SEQ ID NO:561/451, SEQ ID NO:562/452, SEQ ID NO:560/450, SEQ ID NO:560/450, SEQ ID NO:561/451, SEQ ID NO:562/452, SEQ ID NO:560/450, SEQ ID NO:56 ID NO:563/453、SEQ ID NO:564/454、SEQ ID NO:565/455、SEQ ID NO:566/456、SEQ ID NO:567/457、SEQ ID NO:568/458、SEQ ID NO:569/459、SEQ ID NO: 570/460、SEQ ID NO:571/461、SEQ ID NO:572/462、SEQ ID NO:573/463、SEQ ID NO:574/464、SEQ ID NO:575/465、SEQ ID NO:576/466、SEQ ID NO:577/467 , SEQ ID NO:578/468, SEQ ID NO:579/469, SEQ ID NO:580/470, SEQ ID NO:581/471, SEQ ID NO:582/472, SEQ ID NO:583/473, SEQ ID NO:584/474, SEQ ID NO:585/475、SEQ ID NO:586/476、SEQ ID NO:587/477、SEQ ID NO:588/478、SEQ ID NO:589/479、SEQ ID NO:590/480、SEQ ID NO:591/481、SEQ ID NO:592 /482、SEQ ID NO:593/483、SEQ ID NO:594/484、SEQ ID NO:595/485、SEQ ID NO:596/486、SEQ ID NO:597/487、SEQ ID NO:598/488、SEQ ID NO:599/489、SE Q ID NO:600/490、SEQ ID NO:601/491、SEQ ID NO:602/492、SEQ ID NO:603/493、SEQ ID NO:604/494、SEQ ID NO:605/495、SEQ ID NO:606/496、SEQ ID NO: 607/497、SEQ ID NO:608/498、SEQ ID NO:609/499、SEQ ID NO:610/500、SEQ ID NO:611/501、SEQ ID NO:612/502、SEQ ID NO:613/503、SEQ ID NO:614/504 , SEQ ID NO:615/505, SEQ ID NO:616/506, SEQ ID NO:617/507, SEQ ID NO:618/508, SEQ ID NO:619/509, SEQ ID NO:620/510, SEQ ID NO:621/511, SEQ ID NO:622/512、SEQ ID NO:623/513、SEQ ID NO:624/514、SEQ ID NO:625/515、SEQ ID NO:626/516、SEQ ID NO:627/517、SEQ ID NO:628/518、SEQ ID NO:629 /519、SEQ ID NO:630/520、SEQ ID NO:631/521、SEQ ID NO:632/522、SEQ ID NO:633/523、SEQ ID NO:634/524、SEQ ID NO:635/525、SEQ ID NO:636/526、SE Q ID NO:637/527、SEQ ID NO:638/528、SEQ ID NO:639/529、SEQ ID NO:640/530、SEQ ID NO:641/531、SEQ ID NO:642/532、SEQ ID NO:643/533、SEQ ID NO :644/534、SEQ ID NO:645/535、SEQ ID NO:646/536、SEQ ID NO:647/537、SEQ ID NO:648/538、SEQ ID NO:649/539、SEQ ID NO:650/540、SEQ ID NO:651/54 1. The modified nucleotide sequences shown in SEQ ID NO:652/542, SEQ ID NO:653/543, SEQ ID NO:654/544, SEQ ID NO:655/545, SEQ ID NO:656/546, SEQ ID NO:657/547, SEQ ID NO:658/548, SEQ ID NO:659/549, SEQ ID NO:660/550 or SEQ ID NO:663/662, or composed of the modified nucleotide sequences shown, wherein the 3' end of the positive strand nucleotide sequence shown in any one of SEQ ID NOs:551-663 is conjugated with an L96 ligand via a phosphate ester bond.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中In some specific embodiments, the dsRNA activator comprises a sense strand and an antisense strand, wherein
所述正义链包含SEQ ID NO:610所示的3’端缀合有L96结构配体的经修饰的核苷酸序列或由其组成,且所述反义链包含SEQ ID NO:500所示的经修饰的核苷酸序列或由其组成;The sense strand comprises or is composed of a modified nucleotide sequence with an L96 ligand conjugated to the 3' end as shown in SEQ ID NO:610, and the antisense strand comprises or is composed of a modified nucleotide sequence as shown in SEQ ID NO:500.
所述正义链包含SEQ ID NO:651所示的3’端缀合有L96结构配体的经修饰的核苷酸序列或由其组成,且所述反义链包含SEQ ID NO:541所示的经修饰的核苷酸序列或由其组成;The sense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:651, which has an L96 structure ligand attached to its 3' end, and the antisense strand comprises or is composed of the modified nucleotide sequence shown in SEQ ID NO:541.
所述正义链包含SEQ ID NO:663所示的3’端缀合有L96结构配体的经修饰的核苷酸序列或由其组成,且所述反义链包含SEQ ID NO:662所示的经修饰的核苷酸序列或由其组成。The sense strand comprises or is composed of a modified nucleotide sequence with an L96 structural ligand conjugated to the 3' end as shown in SEQ ID NO:663, and the antisense strand comprises or is composed of a modified nucleotide sequence as shown in SEQ ID NO:662.
在一些具体的实施方案中,所述dsRNA活性剂包含正义链和反义链,其中In some specific embodiments, the dsRNA activator comprises a sense strand and an antisense strand, wherein
所述正义链由SEQ ID NO:610所示的3’端缀合有L96结构配体的经修饰的核苷酸序列组成,且所述反义链由SEQ ID NO:500所示的经修饰的核苷酸序列组成;The sense strand consists of a modified nucleotide sequence with an L96 ligand attached to the 3' end, as shown in SEQ ID NO:610, and the antisense strand consists of a modified nucleotide sequence, as shown in SEQ ID NO:500.
所述正义链由SEQ ID NO:651所示的3’端缀合有L96结构配体的经修饰的核苷酸序列组成,且所述反义链由SEQ ID NO:541所示的经修饰的核苷酸序列组成;The sense strand consists of a modified nucleotide sequence with an L96 ligand attached to the 3' end, as shown in SEQ ID NO:651, and the antisense strand consists of a modified nucleotide sequence, as shown in SEQ ID NO:541.
所述正义链由SEQ ID NO:663所示的3’端缀合有L96结构配体的经修饰的核苷酸序列组成,且所述反义链由SEQ ID NO:662所示的经修饰的核苷酸序列组成。The sense strand consists of a modified nucleotide sequence with an L96 structural ligand attached to the 3' end, as shown in SEQ ID NO:663, and the antisense strand consists of a modified nucleotide sequence, as shown in SEQ ID NO:662.
III.dsRNA活性剂的制备III. Preparation of dsRNA activators
dsRNA可以通过本领域已知的标准方法合成。本发明的双链RNA可以使用两步程序制备。首先,单独制备双链RNA分子的单条链。然后,对组分链进行退火。在一些实施方案中,dsRNA例如siRNA化合物的单条链可以使用溶液相或固相有机合成或两者制备。有机合成提供的优点是可以容易地制备包括非天然或经修饰的核苷酸的寡核苷酸链。dsRNA can be synthesized using standard methods known in the art. The double-stranded RNA of the present invention can be prepared using a two-step procedure. First, a single strand of the double-stranded RNA molecule is prepared separately. Then, the component strands are annealed. In some embodiments, the single strand of dsRNA, such as siRNA, can be prepared using solution-phase or solid-phase organic synthesis, or both. Organic synthesis offers the advantage of readily preparing oligonucleotide chains comprising non-natural or modified nucleotides.
在一些实施方案中,通过RNA固相合成来制备本发明的dsRNA。RNA固相合成是一种常用的合成RNA分子的技术,它允许在固相载体上逐步构建RNA链。这种方法具有高通量、高效率和可自动化的特点,广泛应用于生物技术和研究领域。在一些实施方案中,RNA固相合成包含如下的基本方法和步骤:In some embodiments, the dsRNA of the present invention is prepared by RNA solid-phase synthesis. RNA solid-phase synthesis is a commonly used technique for synthesizing RNA molecules, which allows for the stepwise construction of RNA chains on a solid support. This method is characterized by high throughput, high efficiency, and automation, and is widely used in biotechnology and research fields. In some embodiments, RNA solid-phase synthesis comprises the following basic methods and steps:
1.模板识别:1. Template recognition:
在固相合成中,首先需要一个模板,通常是一段单链DNA,它包含了与所需RNA序列互补的序列。这个模板DNA被固定在固相载体上,如控制孔隙玻璃(CPG)或聚苯乙珠子。In solid-phase synthesis, a template is first required, typically a single-stranded DNA sequence containing a sequence complementary to the desired RNA sequence. This template DNA is immobilized on a solid support, such as controlled-pore glass (CPG) or polystyrene beads.
2.转录起始:2. Transcription initiation:
RNA聚合酶识别并结合到模板DNA上的启动子序列。在固相合成中,这个过程通常不需要引物,因为RNA聚合酶可以直接在启动子区域开始合成RNA链。RNA polymerase recognizes and binds to the promoter sequence on template DNA. In solid-phase synthesis, this process typically does not require primers because RNA polymerase can directly initiate RNA chain synthesis at the promoter region.
3.转录延伸:3. Transcription elongation:
一旦RNA聚合酶与启动子结合,它会开始在模板DNA上合成RNA链。在这个过程中,RNA聚合酶沿着DNA模板移动,逐个添加与模板DNA碱基互补的核苷酸三磷酸(NTPS)。每次添加一个NTP,RNA链就会在3’端延伸一个核苷酸。Once RNA polymerase binds to the promoter, it begins synthesizing an RNA chain on the template DNA. In this process, RNA polymerase moves along the DNA template, adding one nucleotide triphosphate (NTP) complementary to the template DNA bases one by one. Each time an NTP is added, the RNA chain extends by one nucleotide at its 3' end.
4.循环合成:4. Cyclic Synthesis:
固相合成的一个关键特点是可以进行多个循环的合成。每个循环包括添加一个新的NTP、移除未反应的NTPS以及RNA聚合酶的洗脱和重新结合。这个过程可以自动进行,大大提高了合成效率。A key feature of solid-phase synthesis is its ability to be performed in multiple cycles. Each cycle involves adding a new NTP, removing unreacted NTPs, and eluting and rebinding with RNA polymerase. This process can be automated, significantly improving synthetic efficiency.
5.转录终止:5. Transcription termination:
当RNA链达到预期长度后,转录过程需要终止。这通常通过添加特定的终止信号或化学物质来实现。Once the RNA strand reaches the desired length, the transcription process needs to terminate. This is typically achieved by adding a specific termination signal or chemical substance.
6.后处理:6. Post-processing:
合成完成后,需要将RNA链从固相载体上释放,并去除任何未反应的NTPS、保护基团和其他杂质。这通常通过化学或酶促方法实现,如使用特定的酶来切割固相载体上的连接。After synthesis, the RNA strands need to be released from the solid support, and any unreacted NTPS, protecting groups, and other impurities need to be removed. This is typically achieved through chemical or enzymatic methods, such as using specific enzymes to cleave the links on the solid support.
7.纯化和分析:7. Purification and analysis:
最后,合成的RNA需要通过适当的纯化方法(如凝胶电泳、柱层析等)来提纯。纯化后的RNA可以通过各种分析方法(如毛细管电泳、质谱分析等)来验证其长度、纯度和序列正确性。Finally, the synthesized RNA needs to be purified using appropriate purification methods (such as gel electrophoresis, column chromatography, etc.). The purified RNA can then be verified for its length, purity, and sequence correctness using various analytical methods (such as capillary electrophoresis, mass spectrometry, etc.).
在一些实施方案中,固相载体是空白的固相载体例如空白的CPG固相载体。在一些实施方案中,固相载体是包含配体的固相载体。In some embodiments, the solid support is a blank solid support, such as a blank CPG solid support. In some embodiments, the solid support is a solid support containing ligands.
IV.药物组合物IV. Pharmaceutical Compositions
在一些实施方案中,本发明提供包含本发明的dsRNA活性剂或其药学上可接受的盐的组合物,优选地组合物为药物组合物或药物制剂。在一个实施方案中,所述组合物还包含药用辅料。在一个实施方案中,组合物,例如,药物组合物,包含本发明的dsRNA活性剂,以及一种或多种其它治疗剂的组合。In some embodiments, the present invention provides compositions comprising the dsRNA active agent of the present invention or a pharmaceutically acceptable salt thereof, preferably pharmaceutical compositions or pharmaceutical formulations. In one embodiment, the composition further comprises a pharmaceutical excipient. In one embodiment, the composition, for example a pharmaceutical composition, comprises the dsRNA active agent of the present invention, and a combination of one or more other therapeutic agents.
本发明还包括包含本发明的dsRNA活性剂或其药学上可接受的盐的组合物(包括药物组合物)。这些组合物还可以包含合适的药用辅料,如本领域中已知的药用载体、药用赋形剂,包括缓冲剂。The present invention also includes compositions (including pharmaceutical compositions) comprising the dsRNA active agent of the present invention or a pharmaceutically acceptable salt thereof. These compositions may also contain suitable pharmaceutical excipients, such as pharmaceutical carriers, pharmaceutical excipients, including buffers, known in the art.
如本文所用,“药用载体”包括生理上相容的任何和全部溶剂、分散介质、等渗剂和吸收延迟剂等。此类载体包括但不限于盐水、缓冲盐水、葡萄糖、水、丙三醇、乙醇或它们的组合。As used herein, "pharmaceutical carrier" includes any and all physiologically compatible solvents, dispersion media, isotonic agents, and absorption delay agents. Such carriers include, but are not limited to, saline, buffered saline, glucose, water, glycerol, ethanol, or combinations thereof.
对于药用辅料的使用及其用途,亦参见“Handbook of Pharmaceutical Excipients”,第八版,R.C.Rowe,P.J.Seskey和S.C.Owen,Pharmaceutical Press,London,Chicago。For information on the use and applications of pharmaceutical excipients, see also "Handbook of Pharmaceutical Excipients", 8th edition, R.C. Rowe, P.J. Seskey and S.C. Owen, Pharmaceutical Press, London, Chicago.
本发明的组合物可以处于多种形式。这些形式例如包括液体、半固体和固体剂型,如液态溶液剂(例如,可注射用溶液剂和可输注溶液剂)、散剂或混悬剂、脂质体剂和栓剂。优选的形式取决于预期的施用模式和治疗用途。The compositions of the present invention can be in a variety of forms. These forms include, for example, liquid, semi-solid, and solid dosage forms, such as liquid solutions (e.g., injectable and infusionable solutions), powders or suspensions, liposomes, and suppositories. Preferred forms depend on the intended administration method and therapeutic use.
可以通过将具有所需纯度的本发明的dsRNA活性剂与一种或多种任选的药用辅料混合来制备包含本发明的dsRNA活性剂的药物或药物组合物。A drug or pharmaceutical composition comprising the dsRNA active agent of the present invention can be prepared by mixing the dsRNA active agent of the present invention having the desired purity with one or more optional pharmaceutical excipients.
在一些实施方案中,dsRNA活性剂存在于未缓冲的溶液中,例如所述未缓冲的溶液是盐水或水。在一些实施方案中,所述dsRNA活性剂存在于缓冲溶液中,例如其中所述缓冲溶液包括乙酸盐、柠檬酸盐、醇溶蛋白、碳酸盐或磷酸盐或其任何组合,如磷酸盐缓冲盐水(PBS)。In some embodiments, the dsRNA activator is present in an unbuffered solution, such as saline or water. In some embodiments, the dsRNA activator is present in a buffered solution, such as an acetate, citrate, prolyl, carbonate, or phosphate, or any combination thereof, such as phosphate-buffered saline (PBS).
本发明的药物组合物或制剂还可以包含超过一种活性成分,所述活性成分是被治疗的特定适应证所需的,优选具有不会不利地彼此影响的互补活性的那些活性成分。例如,理想的是还提供其它治疗剂,例如胰岛素、胰高血糖素样肽1激动剂、磺酰脲类、西格列奈类、双胍类、噻唑烷二酮、α-葡萄糖苷酶抑制剂、SGLT2抑制剂、DPP-4抑制剂、HMG-CoA还原酶抑制剂、他汀类药物以及上述任何药物的复方制剂等。所述活性成分以对于目的用途有效的量合适地组合存在。The pharmaceutical compositions or formulations of the present invention may also comprise more than one active ingredient, said active ingredient being required for the specific indication being treated, preferably those active ingredients having complementary activities that do not adversely affect each other. For example, it is desirable to also provide other therapeutic agents, such as insulin, glucagon-like peptide-1 agonists, sulfonylureas, sitaglinides, biguanides, thiazolidinediones, α-glucosidase inhibitors, SGLT2 inhibitors, DPP-4 inhibitors, HMG-CoA reductase inhibitors, statins, and combination formulations of any of the above. The active ingredients are suitably combined in an amount effective for the intended use.
在一些实施方案中,本发明的药物组合物或制剂可以包含在小瓶中,或者包含在注射器中。In some embodiments, the pharmaceutical composition or formulation of the present invention may be contained in a vial or in a syringe.
V.药物组合和药盒V. Drug combinations and pillboxes
在一些实施方案中,本发明还提供了药物组合或药物组合产品,其包含本发明的dsRNA活性剂,以及一种或多种其它治疗剂。In some embodiments, the present invention also provides pharmaceutical combinations or pharmaceutical combination products comprising the dsRNA activator of the present invention, and one or more other therapeutic agents.
本发明的另一个目的是提供一种成套药盒,其包含本发明的药物组合,优选地所述药盒为药物剂量单元形式。由此可以依据给药方案或药物施用间隔提供剂量单元。Another object of the present invention is to provide a complete pillbox containing the drug combination of the present invention, preferably said pillbox in the form of drug dosage units. This allows dosage units to be provided according to a dosing regimen or drug administration interval.
在一个实施方案中,本发明的成套药盒在同一包装内包含:In one embodiment, the complete medicine box of the present invention comprises, within the same package:
-含有包含本本发明的dsRNA活性剂的药物组合物的第一容器;- A first container containing a pharmaceutical composition comprising the dsRNA active agent of the present invention;
-含有包含其它治疗剂的药物组合物的第二容器。- A second container containing a pharmaceutical composition comprising other therapeutic agents.
在一些实施方案中,其它治疗剂例如预防或治疗INHBE相关的疾病和/或病症有效的任何治疗剂,涵盖用于治疗代谢紊乱或肥胖或心血管疾病的各种治疗剂,例如胰岛素、胰高血糖素样肽1激动剂、磺酰脲类、西格列奈类、双胍类、噻唑烷二酮、α-葡萄糖苷酶抑制剂、SGLT2抑制剂、DPP-4抑制剂、HMG-CoA还原酶抑制剂、他汀类药物以及上述任何药物的复方制剂。In some implementations, other therapeutic agents, such as any therapeutic agent effective in preventing or treating INHBE-related diseases and/or conditions, encompass a wide range of therapeutic agents used to treat metabolic disorders or obesity or cardiovascular diseases, such as insulin, glucagon-like peptide-1 agonists, sulfonylureas, sitaglinides, biguanides, thiazolidinediones, alpha-glucosidase inhibitors, SGLT2 inhibitors, DPP-4 inhibitors, HMG-CoA reductase inhibitors, statins, and combination preparations of any of the above drugs.
VI.用途和方法VI. Uses and Methods
本发明的一个方面提供了一种抑制细胞中的INHBE基因表达和/或活性的方法,包括使所述细胞与本发明的dsRNA活性剂、药物组合物、药物组合解除,由此抑制所述细胞中的所述INHBE基因的表达。在一些实施方案中,所述细胞在受试者体内。在一些实施方案中,所述受试者患有INHBE相关的疾病和/或病症。One aspect of the present invention provides a method for inhibiting the expression and/or activity of the INHBE gene in cells, comprising deactivating the cells from the dsRNA activator, pharmaceutical composition, or combination of drugs of the present invention, thereby inhibiting the expression of the INHBE gene in the cells. In some embodiments, the cells are in a subject. In some embodiments, the subject suffers from an INHBE-related disease and/or condition.
在一些实施方案中,使所述细胞与所述dsRNA活性剂接触,从而将INHBE的表达抑制了至少约40%、约50%、约55%、约60%、约65%、约70%、约75%、约80%、约85%、约90%、约91%、约92%、约93%或约94%。在一些实施方案中,抑制INHBE表达使所述受试者的血清中的INHBE蛋白水平降低至少约40%、约50%、约55%、约60%、约65%、约70%、约75%、约80%、约85%、约90%、约91%、约92%、约93%或约94%。在一些实施方案中,向受试者施用所述dsRNA活性剂导致INHBE浓度降低,或导致受试者体内INHBE蛋白积累减少。在一些实施方案中,向受试者施用所述dsRNA活性剂导致INHBE浓度或含量降低,或导致受试者体内INHBE蛋白积累减少或INHBE蛋白含量降低。在一些实施方案中,向受试者施用所述dsRNA活性剂导致受试者体液中INHBE浓度或含量降低。在一些实施方案中,向受试者施用所述dsRNA制剂导致受试者肝脏内或肝细胞INHBE表达降低或蛋白含量降低。In some embodiments, contacting the cells with the dsRNA activator thereby inhibiting INHBE expression by at least about 40%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, or about 94%. In some embodiments, inhibition of INHBE expression reduces the level of INHBE protein in the serum of the subject by at least about 40%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, or about 94%. In some embodiments, administration of the dsRNA activator to the subject results in a decrease in INHBE concentration or a reduction in the accumulation of INHBE protein in the subject. In some embodiments, administration of the dsRNA activator to the subject results in a decrease in INHBE concentration or content, or a decrease in INHBE protein accumulation or content in the subject's body. In some embodiments, administration of the dsRNA activator to the subject results in a decrease in INHBE concentration or content in the subject's body fluids. In some embodiments, administration of the dsRNA formulation to the subject results in a decrease in INHBE expression or protein content in the subject's liver or hepatocytes.
本发明一方面提供了在受试者中预防或治疗疾病的方法,包括向受试者施用有效量的本发明的dsRNA活性剂、药物组合物、药物组合或药盒。在一些实施方案中,所述疾病为INHBE相关的疾病和/或病症。This invention provides, in one aspect, a method for preventing or treating a disease in a subject, comprising administering to the subject an effective amount of the dsRNA active agent, pharmaceutical composition, drug combination, or kit of the invention. In some embodiments, the disease is an INHBE-related disease and/or condition.
本发明还提供了在受试者中减轻体重的方法,包括向受试者施用有效量的本发明的dsRNA活性剂、药物组合物、药物组合或药盒。The present invention also provides a method for reducing weight in subjects, comprising administering to the subject an effective amount of the dsRNA active agent, pharmaceutical composition, pharmaceutical combination or kit of the present invention.
在一些实施方案中,本发明涉及本发明的dsRNA活性剂、药物组合物、药物组合或药盒,其用于疗法,例如用于治疗INHBE相关的疾病和/或病症,和/或用于减轻体重。In some embodiments, the present invention relates to the dsRNA activator, pharmaceutical composition, pharmaceutical combination or kit of the present invention for use in therapies, such as for treating INHBE-related diseases and/or conditions, and/or for weight loss.
在一些实施方案中,本发明涉及利用本发明的dsRNA活性剂、药物组合物、药物组合或药盒治疗疾病,例如本文提及的疾病或病症的方法,或用于所述治疗的用途,或用于减轻体重,或用于制备用于所述治疗或用于减轻体重的药物的用途。In some embodiments, the present invention relates to methods for treating diseases, such as those mentioned herein, using the dsRNA active agent, pharmaceutical composition, pharmaceutical combination, or cassette of the present invention, or to uses for said treatment, or for weight loss, or to uses for preparing a medicament for said treatment or for weight loss.
在一些实施方案中,所述INHBE相关的疾病和/或病症与INHBE的异常表达(例如过表达或表达上调)或异常活性(例如活性增加)相关。在一些实施方案中,所述疾病或病症为受益于抑制素亚基βE(INHBE)表达和/或活性的降低而获益的适应症。In some embodiments, the INHBE-related diseases and/or conditions are associated with abnormal expression (e.g., overexpression or upregulation) or abnormal activity (e.g., increased activity) of INHBE. In some embodiments, the disease or condition is an indication for which one benefits from reduced expression and/or activity of inhibin subunit βE (INHBE).
在一些实施方案中,患有INHBE相关的疾病和/或病症的受试者或其细胞中INHBE异常表达或活性。在一些实施方案中,所述受试者(特别是成年受试者)中具有INHBE过表达。在一些实施方案中,所述受试者中具有(例如升高水平的,例如核酸或蛋白质水平或活性)INHBE(例如相比健康受试者)。在一些实施方案中,所述受试者的生物样品(例如血液、血清、组织例如肝组织或细胞例如肝细胞)中具有(例如升高水平的,例如核酸或蛋白质水平或活性的)INHBE(例如相比健康受试者的生物样品(例如健康受试者中的相应组织或细胞))。在一些实施方案中,受试者中具有过表达INHBE的细胞例如肝细胞。在一些实施方案中,所述个体的细胞(例如肝细胞)过表达INHBE,例如中等或高等表达INHBE。在一些实施实施方案中,INHBE的异常表达是指在细胞(例如肝细胞)上的INHBE的表达相比对照细胞(例如健康个体相应组织的健康细胞例如健康肝细胞)中的INHBE表达高。在一些实施实施方案中,INHBE的异常表达是指在肝组织或肝细胞中的INHBE的表达相比对照组织或细胞(例如健康个体相应组织或相应的健康肝细胞)中的INHBE表达高。In some embodiments, a subject suffering from an INHBE-related disease and/or condition, or whose cells exhibit abnormal INHBE expression or activity. In some embodiments, the subject (particularly an adult subject) has INHBE overexpression. In some embodiments, the subject has (e.g., elevated levels, such as nucleic acid or protein levels or activity) INHBE (e.g., compared to a healthy subject). In some embodiments, the subject's biological sample (e.g., blood, serum, tissue such as liver tissue, or cells such as hepatocytes) has (e.g., elevated levels, such as nucleic acid or protein levels or activity) INHBE (e.g., compared to a biological sample from a healthy subject (e.g., the corresponding tissue or cells in a healthy subject)). In some embodiments, the subject has cells that overexpress INHBE, such as hepatocytes. In some embodiments, the individual's cells (e.g., hepatocytes) overexpress INHBE, for example, moderately or highly. In some embodiments, abnormal INHBE expression refers to higher INHBE expression in cells (e.g., hepatocytes) compared to INHBE expression in control cells (e.g., healthy cells in the corresponding tissue of a healthy individual, such as healthy hepatocytes). In some implementation schemes, abnormal expression of INHBE refers to higher INHBE expression in liver tissue or hepatocytes compared to control tissues or cells (e.g., corresponding tissues or corresponding healthy hepatocytes of a healthy individual).
在本文中所使用的“INHBE过表达或表达上调”是指相比健康个体的相应组织或细胞而言,INHBE的蛋白质水平(例如蛋白质浓度或积累)升高。In this article, “INHBE overexpression or upregulation” refers to an increase in the protein level (e.g., protein concentration or accumulation) of INHBE compared to the corresponding tissues or cells of healthy individuals.
在一些实施方案中,所述INHBE相关的疾病和/或病症是代谢紊乱或肥胖或心血管疾病,例如代谢紊乱是代谢综合征,例如肥胖如肥胖症。In some implementations, the INHBE-related disease and/or condition is a metabolic disorder or obesity or cardiovascular disease, such as metabolic disorder being metabolic syndrome, or obesity being obesity.
本发明的dsRNA活性剂或包含其的组合物或药物或制剂还可以与一种或多种其它疗法例如其他治疗方式和/或其它治疗剂组合施用,用于本文所述的用途,例如用于预防和/或治疗本文提及的相关疾病或病症。因此,本发明还涉及本发明的dsRNA活性剂或包含其的组合物或药物或制剂与一种或多种其它疗法的组合疗法。The dsRNA active agent or composition or drug or formulation comprising the present invention may also be administered in combination with one or more other therapies, such as other treatment modalities and/or other therapeutic agents, for the purposes described herein, such as for the prevention and/or treatment of the related diseases or conditions mentioned herein. Therefore, the present invention also relates to combination therapies of the dsRNA active agent or composition or drug or formulation comprising the present invention with one or more other therapies.
在其他方面,本发明提供本发明的dsRNA活性剂或包含其的组合物或药物或制剂或组合产品在生产或制备药物中的用途,所述药物用于本文所述的用途,例如用于预防或治疗本文提及的相关疾病或病症。In other respects, the present invention provides the use of the dsRNA active agent of the present invention or a composition or drug or formulation thereof in the manufacture or preparation of a medicament for the purposes described herein, such as for the prevention or treatment of the related diseases or conditions mentioned herein.
在其他方面,本发明还提供了本发明的dsRNA活性剂,或包含其的组合物或药物或制剂或组合产品,其用于疗法,例如用于治疗本文提及的相关疾病或病症。In other respects, the present invention also provides the dsRNA activator of the present invention, or compositions, pharmaceuticals, formulations or combination products comprising the present invention, for use in therapies, such as for treating the related diseases or conditions mentioned herein.
受试者可以是哺乳动物,例如,灵长类,优选地,高级灵长类,例如,人类(例如,患有本文所述疾病或具有患有本文所述疾病的风险的个体)。Subjects may be mammals, such as primates, preferably higher primates, such as humans (e.g., individuals who have the disease described herein or are at risk of having the disease described herein).
在一个实施方案中,受试者患有本文所述疾病或具有患有本文所述疾病的风险。In one implementation, the subject has the disease described herein or is at risk of having the disease described herein.
本发明的组合疗法涵盖组合施用(例如两种或更多种治疗剂包含在同一配制剂或分开的配制剂中),和分开施用。在分开施用的情况中,可以在施用其它治疗剂和/或活性剂之前,同时,和/或之后施用本发明的dsRNA活性剂或包含其的组合物或药物或制剂。The combination therapy of the present invention covers combined administration (e.g., two or more therapeutic agents contained in the same formulation or separate formulations) and separate administration. In the case of separate administration, the dsRNA active agent or composition or drug or formulation of the present invention may be administered before, simultaneously with, and/or after the administration of other therapeutic agents and/or active agents.
在一些实施方案中,可以与本发明dsRNA活性剂或药物或制剂或组合物组合或组合施用的其它治疗剂选自例如预防或治疗INHBE相关的疾病和/或病症有效的任何治疗剂,涵盖用于治疗代谢紊乱或肥胖或心血管疾病的各种治疗剂,例如胰岛素、胰高血糖素样肽1激动剂、磺酰脲类、西格列奈类、双胍类、噻唑烷二酮、α-葡萄糖苷酶抑制剂、SGLT2抑制剂、DPP-4抑制剂、HMG-CoA还原酶抑制剂、他汀类药物以及上述任何药物的复方制剂。In some embodiments, other therapeutic agents that may be combined or administered in combination with the dsRNA activator, drug, formulation, or composition of the present invention are selected from any therapeutic agent effective for, for example, the prevention or treatment of INHBE-related diseases and/or conditions, covering a variety of therapeutic agents for the treatment of metabolic disorders or obesity or cardiovascular diseases, such as insulin, glucagon-like peptide-1 agonists, sulfonylureas, sitaglinides, biguanides, thiazolidinediones, α-glucosidase inhibitors, SGLT2 inhibitors, DPP-4 inhibitors, HMG-CoA reductase inhibitors, statins, and combination formulations of any of the above drugs.
实施例1、siRNA合成Example 1: siRNA Synthesis
RNA固相合成是一种常用的合成RNA分子的技术,它允许在固相载体上逐步构建RNA链。这种方法具有高通量、高效率和可自动化的特点,广泛应用于生物技术和研究领域。RNA solid-phase synthesis is a commonly used technique for synthesizing RNA molecules, allowing for the stepwise construction of RNA chains on a solid support. This method is characterized by high throughput, high efficiency, and automation, and is widely used in biotechnology and research fields.
根据以下方法合成表2中所示的INHBE RNAi剂双链体:The INHBE RNAi agent duplexes shown in Table 2 were synthesized according to the following method:
A.合成。根据在寡核苷酸合成中使用的固相亚磷酰胺技术合成INHBE RNAi剂的有义链和反义链。根据比例,使用Mer Made192(Bioautomation)或OP Pilot 100(GE Healthcare)。在由可控孔玻璃(CPG,500A或600A可购自Prime Synthesis,Aston,PA,USA)制得的固体载体上进行合成。所有的RNA和2’-修饰的亚磷酰胺购自上海兆维科技发展有限公司。具体地,使用以下2’-O-甲基亚磷酰胺:(5’-O-二甲氧基三苯甲基-N6-(苯甲酰基)-2’-O-甲基-腺苷-3’-O-(2-氰基乙基-N,N-二异丙基氨基)亚磷酰胺、5‘-O-二甲氧基-三苯甲基-N4-(乙酰基)-2‘-O-甲基-胞苷-3‘-O-(2-氰基乙基-N,N-二异丙基-氨基)亚磷酰胺、(5‘-O-二甲氧基三苯甲基-N2-(异丁酰基)-2’-O-甲基-鸟苷-3’-O-(2-氰基乙基-N,N-二异丙基氨基)亚磷酰胺和5’-O-二甲氧基三苯甲基-2’-O-甲基-尿苷-3’-O-(2-氰基乙基-N,N-二异丙基氨基)亚磷酰胺。2’-脱氧-2’-氟-亚磷酰胺带有与2’-O-甲基亚酰胺相同的保护基。脱碱基(3’-O-二甲氧基三苯甲基-2’-脱氧核糖-5’-O-(2-氰基乙基-N,N-二异丙基氨基)亚磷酰胺购自上海兆维科技发展有限公司。将含有亚磷酰胺的靶向配体溶解于无水二氯甲烷或无水乙腈(50mM)中,同时将所有其它亚酰胺溶解于无水乙腈(50mM)中,并加入分子筛(3A).使用5-苄硫基-1H-四唑(BTT,250mM,溶于乙腈)或5-乙硫基-1H-四唑(ETT,250mM,溶于乙腈)作为活化剂溶液。偶联时间为12分钟(RNA)、15分钟(靶向配体)、90秒(2’OMe)和60秒(2’F)。为了引入硫代磷酸酯键,采用溶于无水乙腈的100mM的3-苯基1,2,4-二噻唑啉-5-酮(POS,可购自PolyOrg,Inc.,Leominster,MA,USA)。A. Synthesis. The sense and antisense strands of the INHBE RNAi agent were synthesized using the solid-phase phosphoramide technique employed in oligonucleotide synthesis. Mer Made192 (Bioautomation) or OP Pilot 100 (GE Healthcare) were used, depending on the proportions. Synthesis was performed on a solid support made of controllable-pore glass (CPG, 500A or 600A, available from Prime Synthesis, Aston, PA, USA). All RNA and 2'-modified phosphoramide were purchased from Shanghai Zhaowei Technology Development Co., Ltd. Specifically, the following 2'-O-methylphosphoramides are used: (5'-O-dimethoxytriphenylmethyl-N6-(benzoyl)-2'-O-methyl-adenosine-3'-O-(2-cyanoethyl-N,N-diisopropylamino)phosphoramide, 5'-O-dimethoxytriphenylmethyl-N4-(acetyl)-2'-O-methyl-cytidine-3'-O-(2-cyanoethyl-N,N-diisopropylamino)phosphoramide, (5'-O-dimethoxytriphenylmethyl-N4-(acetyl)-2'-O-methyl-cytidine-3'-O-(2-cyanoethyl-N,N-diisopropylamino)phosphoramide, (5'-O-dimethoxytriphenylmethyl-N6 ... Triphenylmethyl-N2-(isobutyryl)-2’-O-methyl-guanosine-3’-O-(2-cyanoethyl-N,N-diisopropylamino)phosphamide and 5’-O-dimethoxytriphenylmethyl-2’-O-methyl-uridine-3’-O-(2-cyanoethyl-N,N-diisopropylamino)phosphamide. 2’-Deoxy-2’-fluorophosphamide has the same protecting group as 2’-O-methylphosphamide. Debasing (3’-O-dimethoxytriphenyl) Methyl-2'-deoxyribose-5'-O-(2-cyanoethyl-N,N-diisopropylamino)phosphamide was purchased from Shanghai Zhaowei Technology Development Co., Ltd. The targeting ligand containing the phosphoramide was dissolved in anhydrous dichloromethane or anhydrous acetonitrile (50 mM), while all other phosphoramides were dissolved in anhydrous acetonitrile (50 mM), and a molecular sieve (3A) was added. 5-Benzylthio-1H-tetrazole (BTT, 250 mM, soluble in acetonitrile) or 5-ethylthio- -1H-tetrazole (ETT, 250 mM, soluble in acetonitrile) was used as the activator solution. Coupling times were 12 min (RNA), 15 min (targeting ligand), 90 s (2’OMe), and 60 s (2’F). To introduce the thiophosphate bond, 100 mM of 3-phenyl-1,2,4-dithiazolin-5-one (POS, available from PolyOrg, Inc., Leominster, MA, USA) dissolved in anhydrous acetonitrile was used.
B.载体键合寡聚体的裂解和去保护。在固相合成完成后,将干燥的固体载体用体积1:1的40重量%的甲胺水溶液和28%的氢氧化铵溶液(Aldrich)在30℃下处理1.5小时。蒸发掉溶液,并将固体残余物在水中重构(见下文)。B. Cleavage and deprotection of the support-bonded oligomers. After solid-phase synthesis, the dried solid support was treated with a 1:1 volume ratio of 40% by weight aqueous methylamine and 28% ammonium hydroxide solution (Aldrich) at 30°C for 1.5 hours. The solution was evaporated, and the solid residue was reconstituted in water (see below).
C.纯化。使用TSKgel SuperQ-5PW 13μm柱和Shimadzu LC-8体系,通过阴离子交换HPLC纯化粗制低聚物。缓冲液A为pH 9.0的20mM Tris、5mM EDTA并且含有20%的乙腈,缓冲液B除了加入1.5M氯化钠以外其他与缓冲液A相同。记录260nm处的UV迹线。合并合适的馏分,然后使用填充有Sephadex G-25凝胶的GE Healthcare XK 26/40柱,用已过滤的DI水或pH 6.7的100mM碳酸氢铵和20%乙腈的运行缓冲液在尺寸排阻HPLC上运行。C. Purification. Crude oligomers were purified by anion-exchange HPLC using a TSKgel SuperQ-5PW 13μm column and a Shimadzu LC-8 system. Buffer A consisted of 20mM Tris, 5mM EDTA, and 20% acetonitrile at pH 9.0. Buffer B was identical to buffer A except for the addition of 1.5M sodium chloride. UV traces were recorded at 260 nm. Appropriate fractions were combined, and the mixture was then run on a size exclusion HPLC system using a GE Healthcare XK 26/40 column packed with Sephadex G-25 gel and a run buffer of filtered DI water or 100mM ammonium bicarbonate and 20% acetonitrile at pH 6.7.
D.退火。通过在1×磷酸盐缓冲盐水(Corning,Cellgro)中结合等摩尔RNA溶液来混合互补链(正义链和反义链),以形成RNAi剂。将一些RNAi剂冻干并储存在-15℃至-25℃下。通过UV-Vis光谱仪测量在1×磷酸盐缓冲盐水中的溶液吸光度来确定双链体浓度。然后将260nm处的溶液吸光度乘以转换因子和稀释因子以确定双链体浓度。除非另行指出,否则所有转换因子均为0.037mg/(mL·cm)。对于一些实验,由以实验方法确定的消光系数计算转换因子。D. Annealing. Complementary strands (sense and antisense strands) were mixed by combining equimolar RNA solutions in 1× phosphate-buffered saline (Corning, Cellgro) to form an RNAi agent. A portion of the RNAi agent was lyophilized and stored at -15°C to -25°C. The duplex concentration was determined by measuring the absorbance of the solution in 1× phosphate-buffered saline using a UV-Vis spectrometer. The absorbance at 260 nm was then multiplied by the conversion factor and dilution factor to determine the duplex concentration. Unless otherwise specified, all conversion factors were 0.037 mg/(mL·cm). For some experiments, the conversion factor was calculated from the extinction coefficient determined experimentally.
表1:INHBE未修饰的双链siRNA的正义链和反义链
Table 1: Sensitive and antisense strands of INHBE-unmodified double-stranded siRNA
表2:INHBE修饰后的双链siRNA的正义链和反义链
Table 2: Sensitive and antisense strands of INHBE-modified double-stranded siRNA
*SEQ ID NO所示的核苷酸序列的裸序列(即无修饰的核苷酸序列)也参见序列表。The naked sequence (i.e., the unmodified nucleotide sequence) of the nucleotide sequence shown in *SEQ ID NO is also listed in the sequence listing.
GalNAc-siRNA缀合物的制备:Preparation of GalNAc-siRNA conjugates:
制备GalNAc-siRNA缀合物(表3):GalNAc-siRNA缀合物合成方法可以参考WO2023003922A1进行。Preparation of GalNAc-siRNA conjugates (Table 3): The synthesis method of GalNAc-siRNA conjugates can be referred to WO2023003922A1.
应理解,在本文上下文中,没有小数“.1”的siRNA ID对应于具有小数“.1”的siRNA ID,例XD000010.1对应于XD000010。It should be understood that, in the context of this article, a siRNA ID without a decimal ".1" corresponds to a siRNA ID with a decimal ".1", for example, XD000010.1 corresponds to XD000010.
表3.带有GalNAc-siRNA
Table 3. Table of items containing GalNAc-siRNA
*SEQ ID NO所示的核苷酸序列的裸序列(即无修饰且未缀合L96的核苷酸序列)也参见序列表。The naked sequence (i.e., the unmodified nucleotide sequence without L96 conjugation) of the nucleotide sequence shown in *SEQ ID NO is also listed in the sequence listing.
实施例2 siRNA对HepG2细胞中人INHBE的抑制Example 2: Inhibition of human INHBE in HepG2 cells by siRNA
HepG2细胞(南京科佰生物科技有限公司,Cat#CBP60199)培养于含10%胎牛血清的EMEM培养基(ATCC,Cat#30-2003)中,在37℃,5% CO2条件下培养。HepG2 cells (Nanjing Kebai Biotechnology Co., Ltd., Cat#CBP60199) were cultured in EMEM medium (ATCC, Cat#30-2003) containing 10% fetal bovine serum at 37°C and 5% CO2.
使用Lipofectamine RNAiMAX(ThermoFisher,Cat#13778150)转染siRNA,具体方法如下:用DEPC化水将siRNA配制成1μM工作液。配制A溶液,每份A溶液含有siRNA工作液1μl和Opti-MEM培养基(GIBCO,Cat#31985070)9μl。配制B溶液,每份B溶液含有0.3μl Lipofectamine RNAiMAX和9.7μl Opti-MEM培养基。将A溶液与B溶液混合后置于96孔板,室温孵育20min,随后加入80μl HepG2细胞,每孔15000个细胞,siRNA终浓度10nM。转染24小时后,使用FlysisAmp Cells-to-CT 1-Step SYBR Green Kit(Vazyme,Cat#CL132)提取细胞RNA,并按试剂盒使用说明进行逆转录与qPCR,测定INHBE mRNA水平。根据GAPDH内参mRNA水平对INHBE mRNA水平进行校正。INHBE mRNA表达水平通过ΔΔCt相对定量法计算,以相对于阴性siRNA对照组处理的细胞INHBE mRNA剩余表达百分比表示,计算公式如下:
ΔCt=Ct(目的基因)–Ct(内参基因)
ΔΔCt=ΔCt(给药组)-ΔCt(阴性siRNA对照组)
INHBE mRNA相对表达水平=2-ΔΔCt×100%(即下表中的mRNA剩余%)siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150). The specific method is as follows: SiRNA was prepared into a 1 μM working solution using DEPC-treated water. Solution A was prepared, with each aliquot containing 1 μl of siRNA working solution and 9 μl of Opti-MEM medium (GIBCO, Cat#31985070). Solution B was prepared, with each aliquot containing 0.3 μl of Lipofectamine RNAiMAX and 9.7 μl of Opti-MEM medium. After mixing solutions A and B, the mixture was placed in a 96-well plate and incubated at room temperature for 20 min. Then, 80 μl of HepG2 cells were added, with 15,000 cells per well, resulting in a final siRNA concentration of 10 nM. Twenty-four hours after transfection, RNA was extracted from cells using the FlysisAmp Cells-to-CT 1-Step SYBR Green Kit (Vazyme, Cat#CL132), and reverse transcription and qPCR were performed according to the kit instructions to determine INHBE mRNA levels. INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ΔΔCt relative quantification method, expressed as the percentage of remaining INHBE mRNA expression relative to the negative siRNA control group. The calculation formula is as follows:
ΔCt = Ct(target gene) – Ct(internal reference gene)
ΔCt = ΔCt (drug administration group) - ΔCt (negative siRNA control group)
The relative expression level of INHBE mRNA = 2 - ΔΔCt × 100% (i.e., the remaining percentage of mRNA in the table below).
表4的结果展示了在HepG2中转染表2中的siRNA分子后INHBE mRNA的抑制情况。Table 4 shows the inhibition of INHBE mRNA after transfection with the siRNA molecules in Table 2 in HepG2.
表4:在HepG2细胞中针对INHBE的dsRNA药物的单剂量筛选
Table 4: Single-dose screening of dsRNA drugs targeting INHBE in HepG2 cells
实施例3 siRNA对Hep3b细胞中人INHBE的抑制(双浓度点)Example 3: Inhibition of human INHBE in Hep3b cells by siRNA (dual concentration points)
在Hep3B细胞中采用两个浓度点1nM和0.1nM对siRNA进行活性筛选。In Hep3B cells, siRNA activity was screened at two concentration points: 1 nM and 0.1 nM.
Hep3B细胞(赛百慷生物技术股份有限公司,Cat#iCell-h091)培养于含10%胎牛血清的MEM培养基(Gibco,Cat#11090-081)中,在37℃,5% CO2条件下培养。Hep3B cells (CyberKang Biotechnology Co., Ltd., Cat#iCell-h091) were cultured in MEM medium (Gibco, Cat#11090-081) containing 10% fetal bovine serum at 37°C and 5% CO2 .
使用Lipofectamine RNAiMAX(ThermoFisher,Cat#13778150)转染siRNA,具体方法如下:用DEPC化水将siRNA配制成0.1μM和0.01μM工作液。配制A溶液,每份A溶液含有siRNA工作液1μl和Opti-MEM培养基(Gibco,Cat#31985070)9μl。配制B溶液,每份B溶液含有0.3μl Lipofectamine RNAiMAX和9.7μl Opti-MEM培养基。将A溶液与B溶液混合后置于96孔板,室温孵育20min,随后加入80μl Hep3B细胞,每孔15000个细胞,siRNA终浓度分别是1nM和0.1nM。转染24小时后,使用FlysisAmp Cells-to-CT 1-Step SYBR Green Kit(Vazyme,Cat#CL132)提取细胞RNA,并按试剂盒使用说明进行逆转录与qPCR,测定INHBE mRNA水平。根据GAPDH内参mRNA水平对INHBE mRNA水平进行校正。INHBE mRNA表达水平通过ΔΔCt相对定量法计算,以相对于阴性siRNA对照组处理的细胞INHBE mRNA剩余表达百分比表示,计算公式如下,且结果见表5:
ΔCt=Ct(目的基因)–Ct(内参基因)
ΔΔCt=ΔCt(给药组)-ΔCt(阴性siRNA对照组)
INHBE mRNA相对表达水平=2-ΔΔCt×100%siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150). The specific method is as follows: SiRNA was prepared into 0.1 μM and 0.01 μM working solutions using DEPC-treated water. Solution A was prepared, with each aliquot containing 1 μl of siRNA working solution and 9 μl of Opti-MEM medium (Gibco, Cat#31985070). Solution B was prepared, with each aliquot containing 0.3 μl of Lipofectamine RNAiMAX and 9.7 μl of Opti-MEM medium. After mixing solutions A and B, the mixture was placed in a 96-well plate and incubated at room temperature for 20 min. Then, 80 μl of Hep3B cells were added, with 15,000 cells per well. The final siRNA concentrations were 1 nM and 0.1 nM, respectively. Twenty-four hours after transfection, cellular RNA was extracted using the FlysisAmp Cells-to-CT 1-Step SYBR Green Kit (Vazyme, Cat#CL132), and reverse transcription and qPCR were performed according to the kit instructions to determine INHBE mRNA levels. INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ΔΔCt relative quantification method, expressed as the percentage of remaining INHBE mRNA expression in cells treated with the negative siRNA control group. The calculation formula is as follows, and the results are shown in Table 5.
ΔCt = Ct(target gene) – Ct(internal reference gene)
ΔCt = ΔCt (drug administration group) - ΔCt (negative siRNA control group)
Relative expression level of INHBE mRNA = 2 - ΔΔCt × 100%
表5:在Hep3B细胞中针对INHBE的dsRNA的双剂量筛选
Table 5: Two-dose screening of dsRNA targeting INHBE in Hep3B cells
其中XD000202为WO2023003922A1中的AD-1708473。XD000202 is AD-1708473 in WO2023003922A1.
实施例4 siRNA对人原代肝细胞中人INHBE的抑制Example 4: Inhibition of human INHBE by siRNA in primary human hepatocytes
在人原代肝细胞(IPHASE,Cat#085A12.21)中采用四个浓度点对siRNA进行活性筛选。The activity of siRNA was screened at four concentration points in human primary hepatocytes (IPHASE, Cat#085A12.21).
参照产品使用说明,使用Lipofectamine RNAiMAX(ThermoFisher,Cat#13778150)转染siRNA,具体方法如下:用DEPC化水稀释siRNA,配制成1μM起始,10倍稀释,共4个浓度梯度。配制A溶液,每份A溶液含有siRNA工作液1μl和Opti-MEM培养基(Gibco,Cat#31985070)9μl。配制B溶液,每份B溶液含有0.3μl Lipofectamine RNAiMAX和9.7μl Opti-MEM培养基。将A溶液与B溶液等体积混合后置于96孔板,室温孵育20min,随后加入80μl复苏的人原代肝细胞,每孔40000个细胞,siRNA终浓度为10nM起始,10倍稀释共4个浓度梯度。转染24小时后,使用FlysisAmp Cells-to-CT 1-Step SYBR Green Kit(Vazyme,Cat#CL132)提取细胞RNA,并按试剂盒使用说明进行逆转录与qPCR,测定INHBE mRNA水平。根据GAPDH内参mRNA水平对INHBE mRNA水平进行校正。INHBE mRNA表达水平通过ΔΔCt相对定量法计算,以相对于阴性siRNA对照组处理的细胞INHBE mRNA剩余表达百分比表示,计算公式如下(结果见表6):
ΔCt=Ct(目的基因)–Ct(内参基因)
ΔΔCt=ΔCt(给药组)-ΔCt(阴性siRNA对照组)
INHBE mRNA相对表达水平=2-ΔΔCt×100%Following the product instructions, siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150). The specific method was as follows: siRNA was diluted with DEPC-treated water to prepare four concentration gradients: 1 μM starting solution, 10-fold dilution, and so on. Solution A was prepared, with each aliquot containing 1 μl of siRNA working solution and 9 μl of Opti-MEM medium (Gibco, Cat#31985070). Solution B was prepared, with each aliquot containing 0.3 μl of Lipofectamine RNAiMAX and 9.7 μl of Opti-MEM medium. Equal volumes of solutions A and B were mixed and incubated in 96-well plates at room temperature for 20 min. Then, 80 μl of resuscitated human primary hepatocytes were added, with 40,000 cells per well. The final siRNA concentration was 10 nM starting solution, with four 10-fold dilutions. Twenty-four hours after transfection, RNA was extracted from cells using the FlysisAmp Cells-to-CT 1-Step SYBR Green Kit (Vazyme, Cat#CL132), and reverse transcription and qPCR were performed according to the kit instructions to determine INHBE mRNA levels. INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ΔΔCt relative quantification method, expressed as the percentage of remaining INHBE mRNA expression in cells treated with the negative siRNA control group. The calculation formula is as follows (results are shown in Table 6):
ΔCt = Ct(target gene) – Ct(internal reference gene)
ΔCt = ΔCt (drug administration group) - ΔCt (negative siRNA control group)
Relative expression level of INHBE mRNA = 2 - ΔΔCt × 100%
表6:在人原代肝细胞中针对INHBE的dsRNA的多剂量筛选
Table 6: Multi-dose screening of dsRNA targeting INHBE in human primary hepatocytes
表7:在人原代肝细胞中针对INHBE的siRNA的多剂量筛选
Table 7: Multi-dose screening of siRNA targeting INHBE in human primary hepatocytes
结果如表7所示,结果表明本公开的siRNA在人原代肝细胞中针对INHBE基因具有高水平的抑制活性。The results are shown in Table 7, indicating that the siRNA disclosed herein has a high level of inhibitory activity against the INHBE gene in human primary hepatocytes.
实施例5.siRNA对猴原代肝细胞中猴INHBE的抑制Example 5. Inhibition of monkey INHBE in primary monkey hepatocytes by siRNA
在猴原代肝细胞(IPHASE,Cat#01932B1.21)中采用四个浓度点对siRNA进行活性筛选。The activity of siRNA was screened at four concentration points in primary monkey hepatocytes (IPHASE, Cat#01932B1.21).
参照产品使用说明,使用Lipofectamine RNAiMAX(ThermoFisher,Cat#13778150)转染siRNA,具体方法如下:用DEPC化水稀释siRNA,配制成1μM起始,10倍往下梯度稀释,共4个浓度的工作液。配制A溶液,每份A溶液含有siRNA工作液1μl和Opti-MEM培养基(Gibco,Cat#31985070)9μl。配制B溶液,每份B溶液含有0.3μl Lipofectamine RNAiMAX和9.7μl Opti-MEM培养基。将A溶液与B溶液等体积混合后置于96孔板,室温孵育20min,随后加入80μl复苏的猴原代肝细胞,每孔40000个细胞,siRNA终浓度为10nM起始,10倍稀释共4个浓度梯度。转染24小时后,使用FlysisAmp Cells-to-CT 1-Step SYBR Green Kit(Vazyme,Cat#CL132)提取细胞RNA,并按试剂盒使用说明进行逆转录与qPCR,测定INHBE mRNA水平。根据GAPDH内参mRNA水平对INHBE mRNA水平进行校正。INHBE mRNA表达水平通过ΔΔCt相对定量法计算,以相对于阴性siRNA对照组处理的细胞INHBE mRNA剩余表达百分比表示,计算公式如下:
ΔCt=Ct(目的基因)–Ct(内参基因)
ΔΔCt=ΔCt(给药组)-ΔCt(阴性siRNA对照组)
INHBE mRNA相对表达水平=2-ΔΔCt×100%Following the product instructions, siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150). The specific method was as follows: siRNA was diluted with DEPC-treated water to prepare working solutions of 1 μM starting concentration, with 10-fold serial dilutions thereafter, for a total of four concentrations. Solution A was prepared, with each aliquot containing 1 μl of siRNA working solution and 9 μl of Opti-MEM medium (Gibco, Cat#31985070). Solution B was prepared, with each aliquot containing 0.3 μl of Lipofectamine RNAiMAX and 9.7 μl of Opti-MEM medium. Equal volumes of solutions A and B were mixed and incubated in 96-well plates at room temperature for 20 min. Then, 80 μl of resuscitated primary monkey hepatocytes were added, with 40,000 cells per well. The final siRNA concentration was 10 nM starting concentration, with 10-fold serial dilutions for a total of four concentrations. Twenty-four hours after transfection, RNA was extracted from cells using the FlysisAmp Cells-to-CT 1-Step SYBR Green Kit (Vazyme, Cat#CL132), and reverse transcription and qPCR were performed according to the kit instructions to determine INHBE mRNA levels. INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ΔΔCt relative quantification method, expressed as the percentage of remaining INHBE mRNA expression relative to the negative siRNA control group. The calculation formula is as follows:
ΔCt = Ct(target gene) – Ct(internal reference gene)
ΔCt = ΔCt (drug administration group) - ΔCt (negative siRNA control group)
Relative expression level of INHBE mRNA = 2 - ΔΔCt × 100%
表8:在猴原代肝细胞中针对INHBE的siRNA的多剂量筛选
Table 8: Multi-dose screening of siRNA targeting INHBE in primary monkey hepatocytes
实施例6 AS链和SS链psiCHECK-2脱靶活性测试Example 6: psiCHECK-2 off-target activity test of AS and SS chains
采用psiCHECK-2质粒(金唯智)构建脱靶质粒:Off-target plasmids were constructed using the psiCHECK-2 plasmid (Genewiz):
(1)PSCM,用于检测正义链的脱靶效应,目标序列与被检测缀合物的正义链的所有19个核苷酸序列完全互补;(1) PSCM is used to detect off-target effects of the sense strand. The target sequence is completely complementary to all 19 nucleotide sequences of the sense strand of the conjugate being detected.
(2)GSSM,用于检测反义链种子区的脱靶效应,目标序列与被检测缀合物的反义链5’末端的1-8位核苷酸序列完全互补。被检测的缀合物反义链的5’末端9-21位的核苷酸序列与其相应的目标序列互补错配。错配的规则是,被检测缀合物的反义链5’端9-21位的任意位置的G、C、A或U核苷酸,分别在目标序列的对应位置与核苷酸T、A、C或G错配。为了提高检测灵敏度,构建了GSSM-5hits脱靶质粒,即5条相同的GSSM序列通过TTCC连接组成。(2) GSSM is used to detect off-target effects in the seed region of the antisense strand. The target sequence is completely complementary to the nucleotide sequence at positions 1-8 of the 5' end of the antisense strand of the conjugate being detected. The nucleotide sequence at positions 9-21 of the 5' end of the antisense strand of the conjugate being detected is complementary to its corresponding target sequence but mismatched. The mismatch rule is that any G, C, A, or U nucleotide at any position 9-21 of the 5' end of the antisense strand of the conjugate being detected mismatches with the corresponding T, A, C, or G nucleotide in the target sequence. To improve detection sensitivity, the GSSM-5hits off-target plasmid was constructed, consisting of five identical GSSM sequences linked by TTCC.
将目标序列嵌入到psiCHECK-2质粒的Xho I/Not I位点。The target sequence was embedded into the Xho I/Not I site of the psiCHECK-2 plasmid.
在Hepa1-6细胞中采用多浓度点对siRNA进行脱靶活性测试。Off-target activity of siRNA was tested in Hepa1-6 cells using multiple concentration sites.
Hepa1-6细胞(南京科佰生物技术有限公司,Cat#CBP60574)培养于含10%胎牛血清的DMEM培养基(Gibco,Cat#11965-092)中,在37℃,5% CO2条件下培养。Hepa1-6 cells (Nanjing Kebai Biotechnology Co., Ltd., Cat#CBP60574) were cultured in DMEM medium (Gibco, Cat#11965-092) containing 10% fetal bovine serum at 37°C and 5% CO2.
消化细胞后,使用完全培养基重悬细胞,加入96孔板,每孔10000个细胞,第二天细胞融合度达80-90%,弃上清,每孔加入90μl Opti-MEM。After digesting the cells, resuspend them in complete culture medium and add them to a 96-well plate with 10,000 cells per well. The next day, when the cell confluence reaches 80-90%, discard the supernatant and add 90 μl of Opti-MEM to each well.
参照产品使用说明,使用2000Reagent(ThermoFisher,Cat#11668019)Refer to the product instruction manual for use. 2000Reagent(ThermoFisher,Cat#11668019)
共转染siRNA和质粒,具体方法如下:用DEPC化水稀释siRNA,配制成2μM起始,10倍往下梯度稀释,共6个浓度的工作液。质粒稀释成200ng/μl的工作液。配制A溶液,每份A溶液含有siRNA工作液2μl、质粒工作液0.05μl、Opti-MEM培养基2.95μl。配制B溶液,每份B溶液含有0.2μl2000Reagent和4.8μl Opti-MEM培养基。将等体积A与B混匀,室温孵育15-20min,以每孔10μl的量加入96孔板,siRNA终浓度为40nM起始,10倍往下梯度稀释,共6个浓度,每孔质粒10ng。4h后补加100μl 20%FBSDMEM完全培养基,继续培养24h。Co-transfecting siRNA and plasmid was performed as follows: siRNA was diluted with DEPC-treated water to prepare a 2 μM starting solution, followed by 10-fold serial dilutions to obtain six working solutions. The plasmid was diluted to a working solution of 200 ng/μl. Solution A was prepared, with each aliquot containing 2 μl of siRNA working solution, 0.05 μl of plasmid working solution, and 2.95 μl of Opti-MEM medium. Solution B was prepared, with each aliquot containing 0.2 μl of siRNA working solution. 2000 Reagent and 4.8 μl Opti-MEM medium. Mix equal volumes of A and B, incubate at room temperature for 15-20 min, and add 10 μl to each well of a 96-well plate. The final siRNA concentration is 40 nM, serially diluted 10-fold downwards for a total of 6 concentrations, with 10 ng of plasmid per well. After 4 h, add 100 μl of 20% FBSDMEM complete medium and continue culturing for 24 h.
24h后根据说明书使用Dual-Glo Luciferase Assay(Promega,Cat#E2940)检测双荧光。计算每孔发光比值Ratio=Ren/Fir,以对照组为基准,对各测试组的Ratio进行归一化,获得R=Ratio(测试)/Ratio(对照),以此表示Renilla报告基因的表达水平,即残留活性。使用不同siRNA浓度所测得的活性结果绘制剂量-效应曲线。24 hours later, dual fluorescence was detected using the Dual-Glo Luciferase Assay (Promega, Cat#E2940) according to the instructions. The fluorescence ratio per well was calculated as Ratio = Ren/Fir. Using the control group as a baseline, the Ratio for each test group was normalized to obtain R = Ratio(test)/Ratio(control), which represents the expression level of the Renilla reporter gene, i.e., residual activity. Dose-response curves were plotted using the activity results measured at different siRNA concentrations.
结果如表9、表10所示,本公开的siRNA正义链脱靶风险低,本公开的siRNA反义链种子区脱靶风险低于XD000202。总的来说,本公开的siRNA脱靶风险较低,潜在安全性高。The results are shown in Tables 9 and 10. The off-target risk of the siRNA of this disclosure is low for the sense strand, and the off-target risk of the antisense strand seed region of the siRNA of this disclosure is lower than that of XD000202. In summary, the siRNA of this disclosure has a low off-target risk and high potential safety.
表9:靶向INHBE的siRNA的脱靶活性结果(GSSM)
Table 9: Off-target activity results of siRNA targeting INHBE (GSSM)
表10:靶向INHBE的siRNA的脱靶活性结果(PSCM)
Table 10: Off-target activity results of siRNA targeting INHBE (PSCM)
实施例7氟代修饰siRNA对Hep3B细胞中人INHBE的抑制Example 7: Inhibition of human INHBE in Hep3B cells by fluorinated siRNA
在Hep3B细胞中采用三个浓度点10nM、1nM和0.1nM对氟代修饰siRNA进行活性筛选。The activity of fluorinated siRNA was screened in Hep3B cells at three concentration points: 10 nM, 1 nM, and 0.1 nM.
Hep3B细胞(赛百慷生物技术股份有限公司,Cat#iCell-h091)培养于含10%胎牛血清的MEM培养基(Gibco,Cat#11090-081)中,在37℃,5% CO2条件下培养。Hep3B cells (CyberKang Biotechnology Co., Ltd., Cat#iCell-h091) were cultured in MEM medium (Gibco, Cat#11090-081) containing 10% fetal bovine serum at 37°C and 5% CO2 .
使用Lipofectamine RNAiMAX(ThermoFisher,Cat#13778150)转染siRNA,具体方法如下:用DEPC化水将siRNA配制成1μM、0.1μM和0.01μM工作液。配制A溶液,每份A溶液含有siRNA工作液1μl和Opti-MEM培养基(Gibco,Cat#31985070)9μl。配制B溶液,每份B溶液含有0.3μl Lipofectamine RNAiMAX和9.7μl Opti-MEM培养基。将A溶液与B溶液混合后置于96孔板,室温孵育20min,随后加入80μl Hep3B细胞,每孔15000个细胞,siRNA终浓度分别是10nM、1nM和0.1nM。转染24小时后,使用FlysisAmp Cells-to-CT 1-Step SYBR Green Kit(Vazyme,Cat#CL132)提取细胞RNA,并按试剂盒使用说明进行逆转录与qPCR,测定INHBE mRNA水平。根据GAPDH内参mRNA水平对INHBE mRNA水平进行校正。INHBE mRNA表达水平通过ΔΔCt相对定量法计算,以相对于阴性siRNA对照组处理的细胞INHBE mRNA剩余表达百分比表示,计算公式如下:
ΔCt=Ct(目的基因)–Ct(内参基因)
ΔΔCt=ΔCt(给药组)-ΔCt(阴性siRNA对照组)
INHBE mRNA相对表达水平=2-ΔΔCt×100%siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, Cat#13778150). The specific method is as follows: siRNA was prepared into 1 μM, 0.1 μM, and 0.01 μM working solutions using DEPC-treated water. Solution A was prepared, with each aliquot containing 1 μl of siRNA working solution and 9 μl of Opti-MEM medium (Gibco, Cat#31985070). Solution B was prepared, with each aliquot containing 0.3 μl of Lipofectamine RNAiMAX and 9.7 μl of Opti-MEM medium. After mixing solutions A and B, the mixture was placed in a 96-well plate and incubated at room temperature for 20 min. Then, 80 μl of Hep3B cells were added, with 15,000 cells per well. The final siRNA concentrations were 10 nM, 1 nM, and 0.1 nM, respectively. Twenty-four hours after transfection, RNA was extracted from cells using the FlysisAmp Cells-to-CT 1-Step SYBR Green Kit (Vazyme, Cat#CL132), and reverse transcription and qPCR were performed according to the kit instructions to determine INHBE mRNA levels. INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ΔΔCt relative quantification method, expressed as the percentage of remaining INHBE mRNA expression relative to the negative siRNA control group. The calculation formula is as follows:
ΔCt = Ct(target gene) – Ct(internal reference gene)
ΔCt = ΔCt (drug administration group) - ΔCt (negative siRNA control group)
Relative expression level of INHBE mRNA = 2 - ΔΔCt × 100%
结果如表11所示,结果表明本公开的氟代修饰siRNA在Hep3B细胞中针对INHBE基因具有与母本相似或更好的抑制活性。The results are shown in Table 11. The results indicate that the fluorinated siRNA disclosed herein has similar or better inhibitory activity against the INHBE gene in Hep3B cells as the maternal parent.
表11:在Hep3B细胞中针对INHBE的氟代修饰dsRNA的三剂量筛选
Table 11: Three-dose screening of fluorinated dsRNA targeting INHBE in Hep3B cells
实施例8 siRNA对人原代肝细胞中人INHBE的抑制(自由摄取)Example 8: Inhibition of human INHBE in primary human hepatocytes (free uptake) by siRNA
化合物通过自由摄取进入人原代肝细胞,过程如下所述:The compound enters human primary hepatocytes via free uptake, as described below:
1)用PBS稀释化合物至终浓度的10倍,取10μL化合物至96孔板中。1) Dilute the compound to 10 times the final concentration with PBS, and take 10 μL of the compound into a 96-well plate.
2)将复苏的人原代肝细胞(IPHASE,Cat#085A12.21)加入96孔板,每孔90μL,共40000个细胞。siRNA终浓度为500nM起始,4倍稀释共7个浓度梯度。2) Resuscitated human primary hepatocytes (IPHASE, Cat#085A12.21) were added to 96-well plates, 90 μL per well, for a total of 40,000 cells. The final concentration of siRNA was 500 nM, with 7 concentration gradients of 4-fold dilution.
培养48小时后,每孔用PBS洗涤一遍,使用FlysisAmp Cells-to-CT 1-Step SYBR Green Kit(Vazyme,Cat#CL132)提取细胞RNA,并按试剂盒使用说明进行逆转录与qPCR,测定INHBE mRNA水平。根据GAPDH内参mRNA水平对INHBE mRNA水平进行校正。INHBE mRNA表达水平通过ΔΔCt相对定量法计算,以相对于阴性siRNA对照组处理的细胞INHBE mRNA剩余表达百分比表示,计算公式如下:
ΔCt=Ct(目的基因)–Ct(内参基因)
ΔΔCt=ΔCt(给药组)-ΔCt(阴性siRNA对照组)
INHBE mRNA相对表达水平=2-ΔΔCt×100%After 48 hours of culture, each well was washed once with PBS, and cellular RNA was extracted using the FlysisAmp Cells-to-CT 1-Step SYBR Green Kit (Vazyme, Cat#CL132). Reverse transcription and qPCR were performed according to the kit instructions to determine INHBE mRNA levels. INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ΔΔCt relative quantification method, expressed as the percentage of remaining INHBE mRNA expression in cells treated with the negative siRNA control group. The calculation formula is as follows:
ΔCt = Ct(target gene) – Ct(internal reference gene)
ΔCt = ΔCt (drug administration group) - ΔCt (negative siRNA control group)
Relative expression level of INHBE mRNA = 2 - ΔΔCt × 100%
结果如表12所示,结果表明本公开的siRNA在人原代肝细胞中针对INHBE基因具有高水平的抑制活性。
The results are shown in Table 12, indicating that the siRNA disclosed herein has a high level of inhibitory activity against the INHBE gene in human primary hepatocytes.
实施例9siRNA对猴原代肝细胞中猴INHBE的抑制(自由摄取)Example 9: Inhibition of monkey INHBE in primary monkey hepatocytes (free uptake) by siRNA
化合物(siRNA)通过自由摄取进入猴原代肝细胞,过程如下所述:The compound (siRNA) enters primary monkey hepatocytes via free uptake, as described below:
用PBS稀释化合物至终浓度的10倍,取10μL化合物至96孔板中。Dilute the compound to 10 times its final concentration with PBS, and transfer 10 μL of the compound into a 96-well plate.
将复苏的猴原代肝细胞(IPHASE,Cat#01932B1.21)加入96孔板,每孔90μL,共50000个细胞。siRNA终浓度为100nM起始,10倍稀释共4个浓度梯度。Resuscitated primary monkey hepatocytes (IPHASE, Cat#01932B1.21) were added to 96-well plates, 90 μL per well, for a total of 50,000 cells. The final concentration of siRNA was 100 nM, with four 10-fold dilutions.
培养48小时后,每孔用PBS洗涤一遍,使用FlysisAmp Cells-to-CT 1-Step SYBR Green Kit(Vazyme,Cat#CL132)提取细胞RNA,并按试剂盒使用说明进行逆转录与qPCR,测定INHBE mRNA水平。根据GAPDH内参mRNA水平对INHBE mRNA水平进行校正。INHBE mRNA表达水平通过ΔΔCt相对定量法计算,以相对于阴性siRNA对照组处理的细胞INHBE mRNA剩余表达百分比表示,计算公式如下:
ΔCt=Ct(目的基因)–Ct(内参基因)
ΔΔCt=ΔCt(给药组)-ΔCt(阴性siRNA对照组)
INHBE mRNA相对表达水平=2-ΔΔCt×100%After 48 hours of culture, each well was washed once with PBS, and cellular RNA was extracted using the FlysisAmp Cells-to-CT 1-Step SYBR Green Kit (Vazyme, Cat#CL132). Reverse transcription and qPCR were performed according to the kit instructions to determine INHBE mRNA levels. INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ΔΔCt relative quantification method, expressed as the percentage of remaining INHBE mRNA expression in cells treated with the negative siRNA control group. The calculation formula is as follows:
ΔCt = Ct(target gene) – Ct(internal reference gene)
ΔCt = ΔCt (drug administration group) - ΔCt (negative siRNA control group)
Relative expression level of INHBE mRNA = 2 - ΔΔCt × 100%
结果如表13所示,结果表明本公开的siRNA在猴原代肝细胞中针对INHBE基因具有高水平的抑制活性。The results are shown in Table 13, indicating that the siRNA disclosed herein has a high level of inhibitory activity against the INHBE gene in primary monkey hepatocytes.
表13:在猴原代肝细胞中针对INHBE的GalNAc-siRNA药物的多剂量筛选
Table 13: Multi-dose screening of GalNAc-siRNA drugs targeting INHBE in primary monkey hepatocytes
实施例10 siRNA在人源化INHBE小鼠中对人INHBE的抑制效果Example 10: Inhibitory effect of siRNA on human INHBE in humanized INHBE mice
将人源化INHBE小鼠随机分组(均为雄性),每组15只,实验组给予XD000155.1,XD000202.1,XD000275.1和XD000275.36,对照组给予PBS。所有动物根据体重计算药量,以9mg/kg的单次剂量皮下给药。给药后第7,21,35天处死动物(每组5只)收集肝脏,使用组织匀浆仪匀浆肝组织,用RNA提取试剂盒(Vazyme,Cat#RC113)提取得到总RNA。随后使用逆转录试剂盒(Vazyme,Cat#R433)逆转录为cDNA,用QPCR试剂盒(Vazyme,Cat#Q712)采用实时荧光定量PCR检测肝组织中人INHBE mRNA的表达水平,引物序列如表14所示。根据GAPDH内参mRNA水平对INHBE mRNA水平进行校正。INHBE mRNA表达水平通过ΔΔCt相对定量法计算,以相对于PBS对照组的INHBE mRNA剩余表达百分比表示,计算公式如下:
ΔCt=Ct(目的基因)–Ct(内参基因)
ΔΔCt=ΔCt(给药组)-ΔCt(PBS对照组)
INHBE mRNA相对表达水平=2-ΔΔCt×100%Humanized INHBE mice (all male) were randomly divided into groups of 15 each. The experimental groups received XD000155.1, XD000202.1, XD000275.1, and XD000275.36, while the control group received PBS. All animals were administered a single subcutaneous dose of 9 mg/kg, calculated based on their body weight. Animals (n=5 per group) were sacrificed on days 7, 21, and 35 post-administration, and their livers were collected. Liver tissue was homogenized using a tissue homogenizer, and total RNA was extracted using an RNA extraction kit (Vazyme, Cat#RC113). The RNA was then reverse transcribed into cDNA using a reverse transcription kit (Vazyme, Cat#R433), and the expression level of human INHBE mRNA in liver tissue was detected using real-time quantitative PCR (QPCR) using a qPCR kit (Vazyme, Cat#Q712). Primer sequences are shown in Table 14. INHBE mRNA levels were corrected for GAPDH internal control mRNA levels. INHBE mRNA expression levels were calculated using the ΔΔCt relative quantification method, expressed as the percentage of remaining INHBE mRNA expression relative to the PBS control group. The calculation formula is as follows:
ΔCt = Ct(target gene) – Ct(internal reference gene)
ΔCt = ΔCt (drug administration group) - ΔCt (PBS control group)
Relative expression level of INHBE mRNA = 2 - ΔΔCt × 100%
结果如表15所示,结果表明本公开的siRNA在人源化INHBE小鼠中针对INHBE基因具有高水平的抑制活性。相对于对照品XD000202.1,在小鼠中,XD000275.1、XD000275.36能更好的敲低INHBE基因,其中XD000275.36在D35天,依然能保持很好的敲低效果,长效性好。The results are shown in Table 15. The results indicate that the disclosed siRNA exhibits high levels of inhibitory activity against the INHBE gene in humanized INHBE mice. Compared to the control XD000202.1, XD000275.1 and XD000275.36 showed better knockdown of the INHBE gene in mice. XD000275.36 maintained a good knockdown effect even on day 35, demonstrating good long-term efficacy.
表14:检测引物的序列
Table 14: Sequences of Detection Primers
表15:人源化INHBE小鼠中人INHBE mRNA的抑制效果
Table 15: Inhibitory effect of human INHBE mRNA in humanized INHBE mice
其中XD000202.1为WO2023003922A1中的AD-1708473.1XD000202.1 is AD-1708473.1 in WO2023003922A1.
实施例11 INHBE siRNA在高脂饮食诱导的肥胖人源化INHBE小鼠中的药效作用Example 11: Pharmacological effects of INHBE siRNA in high-fat diet-induced obese humanized INHBE mice
本实验采用高脂饮食诱导的肥胖人源化INHBE小鼠测定INHBE siRNA药物的药效作用。This experiment used high-fat diet-induced obese humanized INHBE mice to determine the efficacy of INHBE siRNA drugs.
将高脂饮食诱导的肥胖人源化INHBE小鼠(购自百奥赛图江苏基因生物技术有限公司)按照体重和体脂分组,一共五组,每组7只。对照组给予PBS,实验组分别给予XD000202.1,XD000155.1,XD000275.1和XD000275.36,给药剂量9mg/kg,皮下给药每周一次,共给药4次,给药期间与停药观察期间每周两次称量体重,每周一次检测体脂。结果如图1和图2所示,和对照组相比,所有INHBE siRNA实验组都能显著降低肥胖人源化INHBE小鼠的体重和体脂;和XD000202.1相比,XD000275.1降低小鼠体重和体脂效果优于XD000202.1,XD000275.36降低小鼠体重和体脂效果与XD000202.1相当。Obese humanized INHBE mice induced by a high-fat diet (purchased from Biocytogen Jiangsu Gene Biotechnology Co., Ltd.) were divided into five groups of seven mice each, based on body weight and body fat percentage. The control group received PBS, while the experimental groups received XD000202.1, XD000155.1, XD000275.1, and XD000275.36, respectively, at a dose of 9 mg/kg, administered subcutaneously once a week for a total of four weeks. Body weight was measured twice a week during the treatment period and the observation period after treatment, and body fat percentage was measured weekly. The results are shown in Figures 1 and 2. Compared with the control group, all INHBE siRNA experimental groups significantly reduced the weight and body fat of obese humanized INHBE mice. Compared with XD000202.1, XD000275.1 was more effective in reducing mouse weight and body fat than XD000202.1, while XD000275.36 was comparable to XD000202.1 in reducing mouse weight and body fat.
本发明的siRNA,特别是修饰后的siRNA在体内的活性优越,超出基于其体外筛选中对活性的预期,且高于现有技术已知的siRNA或与其相当。The siRNAs of the present invention, particularly the modified siRNAs, exhibit superior in vivo activity, exceeding expectations based on their activity in in vitro screening, and surpassing or being comparable to siRNAs known in the prior art.
Claims (19)
NmsNfsNmNmNmNfNmNmNmNmNmNmNmNfNmNfNmNmNmsNmsNm,和antisense chain:
NmsNfsNmNmNmNfNmNmNmNmNmNmNmNfNmNfNmNmNmsNmsNm, and
NmsNmsNmNmNmNmNfNfNfNmNmNmNmNmNmNmNmNmNm;Chain of Justice:
NmsNmsNmNmNmNmNfNfNfNmNmNmNmNmNmNmNmNmNmNm;
NmsNfsNmNmNmNmNfNmNmNmNmNfNmNfNmNfNmNmNmsNmsNm,和antisense chain:
NmsNfsNmNmNmNmNfNmNmNmNmNfNmNfNmNfNmNmNmsNmsNm, and
NmsNmsNmNmNmNmNfNfNfNfNmNmNmNmNmNmNmNmNm;Chain of Justice:
NmsNmsNmNmNmNmNfNfNfNfNmNmNmNmNmNmNmNmNm;
Optionally, the oligonucleotide of the dsRNA activator is conjugated to one or more (e.g., 1) ligands, each of which independently has the structure of formula (I):
Optionally, each of the ligands independently has the structure of formula (Ia-i):
Optionally, each of the ligands is an L96 portion having the following structure:
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