WO2015116969A3 - Method, vectors, cells, seeds and kits for stacking genes into a single genomic site - Google Patents
Method, vectors, cells, seeds and kits for stacking genes into a single genomic site Download PDFInfo
- Publication number
- WO2015116969A3 WO2015116969A3 PCT/US2015/013845 US2015013845W WO2015116969A3 WO 2015116969 A3 WO2015116969 A3 WO 2015116969A3 US 2015013845 W US2015013845 W US 2015013845W WO 2015116969 A3 WO2015116969 A3 WO 2015116969A3
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- WO
- WIPO (PCT)
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8201—Methods for introducing genetic material into plant cells, e.g. DNA, RNA, stable or transient incorporation, tissue culture methods adapted for transformation
- C12N15/8213—Targeted insertion of genes into the plant genome by homologous recombination
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- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Biomedical Technology (AREA)
- Biotechnology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Organic Chemistry (AREA)
- Chemical & Material Sciences (AREA)
- General Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Cell Biology (AREA)
- Microbiology (AREA)
- Plant Pathology (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Physics & Mathematics (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Breeding Of Plants And Reproduction By Means Of Culturing (AREA)
Abstract
Methods of gene stacking are described herein. The methods can be used to repeatedly add genes into a chosen locus in a precise manner, which ensures co-segregation of all introduced genes and contributes to the stabilization of gene expression. In addition, methods of removing any additional foreign DNA elements such as selectable markers are provided. Seed stocks or cell lines comprising a gene stacking site, vectors containing an insert flanked by target sites for a site-specific DNA recombinase for use in the methods and kits for carrying out the methods are also provided herein.
Priority Applications (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US15/114,724 US10233456B2 (en) | 2014-01-30 | 2015-01-30 | Method, vectors, cells, seeds and kits for stacking genes into a single genomic site |
| US16/290,573 US11066676B2 (en) | 2014-01-30 | 2019-03-01 | Method, vectors, cells, seeds and kits for stacking genes into a single genomic site |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201461933646P | 2014-01-30 | 2014-01-30 | |
| US61/933,646 | 2014-01-30 |
Related Child Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| US15/114,724 A-371-Of-International US10233456B2 (en) | 2014-01-30 | 2015-01-30 | Method, vectors, cells, seeds and kits for stacking genes into a single genomic site |
| US16/290,573 Division US11066676B2 (en) | 2014-01-30 | 2019-03-01 | Method, vectors, cells, seeds and kits for stacking genes into a single genomic site |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| WO2015116969A2 WO2015116969A2 (en) | 2015-08-06 |
| WO2015116969A3 true WO2015116969A3 (en) | 2015-11-19 |
Family
ID=53757923
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/US2015/013845 Ceased WO2015116969A2 (en) | 2014-01-30 | 2015-01-30 | Method, vectors, cells, seeds and kits for stacking genes into a single genomic site |
Country Status (2)
| Country | Link |
|---|---|
| US (2) | US10233456B2 (en) |
| WO (1) | WO2015116969A2 (en) |
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| CA2853829C (en) | 2011-07-22 | 2023-09-26 | President And Fellows Of Harvard College | Evaluation and improvement of nuclease cleavage specificity |
| RS58255B1 (en) | 2013-04-16 | 2019-03-29 | Regeneron Pharma | Targeted modification of rat genome |
| US20150044192A1 (en) | 2013-08-09 | 2015-02-12 | President And Fellows Of Harvard College | Methods for identifying a target site of a cas9 nuclease |
| US9359599B2 (en) | 2013-08-22 | 2016-06-07 | President And Fellows Of Harvard College | Engineered transcription activator-like effector (TALE) domains and uses thereof |
| US9388430B2 (en) | 2013-09-06 | 2016-07-12 | President And Fellows Of Harvard College | Cas9-recombinase fusion proteins and uses thereof |
| US9526784B2 (en) | 2013-09-06 | 2016-12-27 | President And Fellows Of Harvard College | Delivery system for functional nucleases |
| US9228207B2 (en) | 2013-09-06 | 2016-01-05 | President And Fellows Of Harvard College | Switchable gRNAs comprising aptamers |
| KR102170502B1 (en) | 2013-12-11 | 2020-10-28 | 리제너론 파마슈티칼스 인코포레이티드 | Methods and compositions for the targeted modification of a genome |
| US20150165054A1 (en) | 2013-12-12 | 2015-06-18 | President And Fellows Of Harvard College | Methods for correcting caspase-9 point mutations |
| PT3152312T (en) | 2014-06-06 | 2020-04-23 | Regeneron Pharma | Methods and compositions for modifying a targeted locus |
| EP3177718B1 (en) | 2014-07-30 | 2022-03-16 | President and Fellows of Harvard College | Cas9 proteins including ligand-dependent inteins |
| EP3221457B1 (en) | 2014-11-21 | 2019-03-20 | Regeneron Pharmaceuticals, Inc. | Methods and compositions for targeted genetic modification using paired guide rnas |
| WO2017070633A2 (en) | 2015-10-23 | 2017-04-27 | President And Fellows Of Harvard College | Evolved cas9 proteins for gene editing |
| NZ747857A (en) | 2016-05-20 | 2023-01-27 | Regeneron Pharma | Methods for breaking immunological tolerance using multiple guide rnas |
| US11359234B2 (en) | 2016-07-01 | 2022-06-14 | Microsoft Technology Licensing, Llc | Barcoding sequences for identification of gene expression |
| US10892034B2 (en) | 2016-07-01 | 2021-01-12 | Microsoft Technology Licensing, Llc | Use of homology direct repair to record timing of a molecular event |
| EP3478852B1 (en) | 2016-07-01 | 2020-08-12 | Microsoft Technology Licensing, LLC | Storage through iterative dna editing |
| US20180004537A1 (en) | 2016-07-01 | 2018-01-04 | Microsoft Technology Licensing, Llc | Molecular State Machines |
| WO2018027078A1 (en) | 2016-08-03 | 2018-02-08 | President And Fellows Of Harard College | Adenosine nucleobase editors and uses thereof |
| JP7201153B2 (en) | 2016-08-09 | 2023-01-10 | プレジデント アンド フェローズ オブ ハーバード カレッジ | Programmable CAS9-recombinase fusion protein and uses thereof |
| US11542509B2 (en) | 2016-08-24 | 2023-01-03 | President And Fellows Of Harvard College | Incorporation of unnatural amino acids into proteins using base editing |
| EP3526320A1 (en) | 2016-10-14 | 2019-08-21 | President and Fellows of Harvard College | Aav delivery of nucleobase editors |
| WO2018119359A1 (en) | 2016-12-23 | 2018-06-28 | President And Fellows Of Harvard College | Editing of ccr5 receptor gene to protect against hiv infection |
| EP3592853A1 (en) | 2017-03-09 | 2020-01-15 | President and Fellows of Harvard College | Suppression of pain by gene editing |
| KR20190123328A (en) | 2017-03-09 | 2019-10-31 | 프레지던트 앤드 펠로우즈 오브 하바드 칼리지 | Cancer vaccine |
| JP2020510439A (en) | 2017-03-10 | 2020-04-09 | プレジデント アンド フェローズ オブ ハーバード カレッジ | Base-editing factor from cytosine to guanine |
| KR102687373B1 (en) | 2017-03-23 | 2024-07-23 | 프레지던트 앤드 펠로우즈 오브 하바드 칼리지 | Nucleobase editing agent comprising a nucleic acid programmable DNA binding protein |
| US11560566B2 (en) | 2017-05-12 | 2023-01-24 | President And Fellows Of Harvard College | Aptazyme-embedded guide RNAs for use with CRISPR-Cas9 in genome editing and transcriptional activation |
| EP3658573A1 (en) | 2017-07-28 | 2020-06-03 | President and Fellows of Harvard College | Methods and compositions for evolving base editors using phage-assisted continuous evolution (pace) |
| US11319532B2 (en) | 2017-08-30 | 2022-05-03 | President And Fellows Of Harvard College | High efficiency base editors comprising Gam |
| EP3697906A1 (en) | 2017-10-16 | 2020-08-26 | The Broad Institute, Inc. | Uses of adenosine base editors |
| US12406749B2 (en) | 2017-12-15 | 2025-09-02 | The Broad Institute, Inc. | Systems and methods for predicting repair outcomes in genetic engineering |
| CN108384812B (en) * | 2018-01-23 | 2019-10-18 | 华南理工大学 | A yeast genome editing vector and its construction method and application |
| CN108165660A (en) * | 2018-03-16 | 2018-06-15 | 深圳盛宝联合谷物股份有限公司 | The molecular labeling and its screening technique of QTL close linkages related to rice meal taste |
| WO2019191023A1 (en) * | 2018-03-30 | 2019-10-03 | Pioneer Hi-Bred International, Inc. | Methods to evaluate traits |
| EP3797160A1 (en) | 2018-05-23 | 2021-03-31 | The Broad Institute Inc. | Base editors and uses thereof |
| WO2019227023A1 (en) * | 2018-05-24 | 2019-11-28 | Monsanto Technology Llc | Genome editing in plants |
| JP2021530968A (en) | 2018-05-24 | 2021-11-18 | モンサント テクノロジー エルエルシー | Genome editing in plants |
| WO2020092453A1 (en) | 2018-10-29 | 2020-05-07 | The Broad Institute, Inc. | Nucleobase editors comprising geocas9 and uses thereof |
| WO2020154500A1 (en) | 2019-01-23 | 2020-07-30 | The Broad Institute, Inc. | Supernegatively charged proteins and uses thereof |
| SG11202109882VA (en) | 2019-03-19 | 2021-10-28 | Broad Inst Inc | Methods and compositions for editing nucleotide sequences |
| EP3956349A1 (en) | 2019-04-17 | 2022-02-23 | The Broad Institute, Inc. | Adenine base editors with reduced off-target effects |
| US20220372521A1 (en) * | 2019-08-14 | 2022-11-24 | The Trustees Of Columbia University In The City Of New York | Rna-guided dna integration and modification |
| US12435330B2 (en) | 2019-10-10 | 2025-10-07 | The Broad Institute, Inc. | Methods and compositions for prime editing RNA |
| KR20230019843A (en) | 2020-05-08 | 2023-02-09 | 더 브로드 인스티튜트, 인코퍼레이티드 | Methods and compositions for simultaneous editing of both strands of a target double-stranded nucleotide sequence |
| US11359210B2 (en) | 2020-07-31 | 2022-06-14 | Inari Agriculture Technology, Inc. | INIR12 transgenic maize |
| US20240011043A1 (en) | 2020-07-31 | 2024-01-11 | Inari Agriculture Technology, Inc. | Generation of plants with improved transgenic loci by genome editing |
Citations (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20090191597A1 (en) * | 2006-01-20 | 2009-07-30 | Asklepios Biopharmaceutical, Inc. | Enhanced production of infectious parvovirus vectors in insect cells |
| US20100162428A1 (en) * | 2007-05-31 | 2010-06-24 | Basf Plant Science Gmbh | Method Of Excising A Nucleic Acid Sequence From A Plant Genome |
| US20110165679A1 (en) * | 2009-12-30 | 2011-07-07 | Pioneer Hi-Bred International, Inc. | Methods and compositions for targeted polynucleotide modification |
| US8034994B2 (en) * | 2005-04-19 | 2011-10-11 | Basf Plant Science Gmbh | Starchy-endosperm and/or germinating embryo-specific expression in mono-cotyledonous plants |
| US20110287545A1 (en) * | 2010-02-09 | 2011-11-24 | Sangamo Biosciences, Inc. | Targeted genomic modification with partially single-stranded donor molecules |
Family Cites Families (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2354195C (en) * | 1998-12-22 | 2012-07-17 | Dow Agrosciences Llc | Methods and genetic compositions to limit outcrossing and undesired gene flow in crop plants |
| US6746870B1 (en) | 1999-07-23 | 2004-06-08 | The Regents Of The University Of California | DNA recombination in eukaryotic cells by the bacteriophage PHIC31 recombination system |
| PL1907553T3 (en) | 2005-07-18 | 2013-02-28 | Pioneer Hi Bred Int | Modified frt recombination sites and methods of use |
| HRP20180074T1 (en) * | 2008-12-17 | 2018-04-06 | Dow Agrosciences Llc | Targeted integration into the zp15 locus |
| KR102110725B1 (en) * | 2009-12-10 | 2020-05-13 | 리전츠 오브 더 유니버스티 오브 미네소타 | Tal effector-mediated dna modification |
-
2015
- 2015-01-30 US US15/114,724 patent/US10233456B2/en not_active Expired - Fee Related
- 2015-01-30 WO PCT/US2015/013845 patent/WO2015116969A2/en not_active Ceased
-
2019
- 2019-03-01 US US16/290,573 patent/US11066676B2/en not_active Expired - Fee Related
Patent Citations (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US8034994B2 (en) * | 2005-04-19 | 2011-10-11 | Basf Plant Science Gmbh | Starchy-endosperm and/or germinating embryo-specific expression in mono-cotyledonous plants |
| US20090191597A1 (en) * | 2006-01-20 | 2009-07-30 | Asklepios Biopharmaceutical, Inc. | Enhanced production of infectious parvovirus vectors in insect cells |
| US20100162428A1 (en) * | 2007-05-31 | 2010-06-24 | Basf Plant Science Gmbh | Method Of Excising A Nucleic Acid Sequence From A Plant Genome |
| US20110165679A1 (en) * | 2009-12-30 | 2011-07-07 | Pioneer Hi-Bred International, Inc. | Methods and compositions for targeted polynucleotide modification |
| US20110287545A1 (en) * | 2010-02-09 | 2011-11-24 | Sangamo Biosciences, Inc. | Targeted genomic modification with partially single-stranded donor molecules |
Also Published As
| Publication number | Publication date |
|---|---|
| US10233456B2 (en) | 2019-03-19 |
| US20160333363A1 (en) | 2016-11-17 |
| US20190323021A1 (en) | 2019-10-24 |
| WO2015116969A2 (en) | 2015-08-06 |
| US11066676B2 (en) | 2021-07-20 |
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