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CN108384812B - A yeast genome editing vector and its construction method and application - Google Patents

A yeast genome editing vector and its construction method and application Download PDF

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CN108384812B
CN108384812B CN201810064104.7A CN201810064104A CN108384812B CN 108384812 B CN108384812 B CN 108384812B CN 201810064104 A CN201810064104 A CN 201810064104A CN 108384812 B CN108384812 B CN 108384812B
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李爽
陈和锋
朱晁谊
朱牧孜
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South China University of Technology SCUT
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Abstract

The invention discloses a kind of Yeast genome editor carrier and its construction method and applications, it is the carrier that sets out with gRNA encoding plasmids P, the LoxP sequence of 34bp in the same direction is introduced respectively at the both ends replication origin Ori of the carrier, and Cre recombinase expression casette is introduced in plasmid P frame position, obtain Yeast genome editor carrier.Application of the carrier in the gene editing using CRISPR/Cas9 as medium is able to achieve efficient, more wheels editor to saccharomyces cerevisiae genome.

Description

一种酵母基因组编辑载体及其构建方法和应用A yeast genome editing vector and its construction method and application

技术领域technical field

本发明涉及一种酿酒酵母基因组编辑的方法及其应用。该编辑方法是利用可实现自我丢失的通用载体,并结合CRISPR/Cas9系统,从而实现对酿酒酵母基因组的高效便捷的编辑。The present invention relates to a method for genome editing of Saccharomyces cerevisiae and its application. This editing method utilizes a universal vector that can achieve self-loss, combined with the CRISPR/Cas9 system, to achieve efficient and convenient editing of the Saccharomyces cerevisiae genome.

背景技术Background technique

随着分子生物学的迅速发展,能够实现对生物体基因组精确编辑的多种基因组编辑(genome editing)技术相继出现。该技术主要利用序列特异性的DNA结合结构域和非特异性的DNA修饰结构域组合而成的序列特异性核酸内切酶(sequence specific nuclease,SSN)在基因组特定位置对双链DNA进行定向切割,进而激活细胞自身的修复机能来实现基因敲除、定点插入或替换等定向改造。With the rapid development of molecular biology, a variety of genome editing technologies that can achieve precise editing of the genome of organisms have emerged one after another. This technology mainly uses a sequence-specific endonuclease (SSN) composed of a sequence-specific DNA-binding domain and a non-specific DNA-modifying domain to perform directional cleavage of double-stranded DNA at a specific location in the genome. And then activate the cell's own repair function to achieve targeted transformation such as gene knockout, site-directed insertion or replacement.

目前,基因编辑技术主要有:锌指核酸酶(zincfinger nuclease,ZFN)、转录激活因子样效应物核酸酶(transcription activator-like effector nucleases,TALEN)系统、规律成簇的短回文重复序列(clustered regularly interspaced short palindromicrepeats,CRISPR)/CRISPR关联蛋白(CRISPR-associated proteins,Cas)系统、格氏嗜盐碱杆菌的Argonaute蛋白(Natronobacterium gregoryi Argonaute,NgAgo)核酸酶和结构引导的内切酶(structure-guided nuclease,SGN)系统等。而在这其中近年来最为广泛应用的就是CRISPR/Cas9系统。At present, gene editing technologies mainly include: zinc finger nucleases (zincfinger nucleases, ZFNs), transcription activator-like effector nucleases (transcription activator-like effector nucleases, TALEN) systems, and regularly clustered short palindromic repeats (clustered repeats). regularly interspaced short palindromicrepeats, CRISPR)/CRISPR-associated proteins (Cas) system, Argonaute protein (Natronobacterium gregoryi Argonaute, NgAgo) nuclease and structure-guided endonuclease (structure-guided) Nuclease, SGN) system, etc. Among them, the most widely used in recent years is the CRISPR/Cas9 system.

CRISPR-Cas系统是细菌在长期进化过程中形成的一种适应性免疫防御机制,其通过RNA介导的DNA剪切机制使细菌具有抵御外源DNA的侵扰的能力。目前根据Cas蛋白基因序列的不同,CRISPR/Cas系统可划分I型、II型和III型。与I型和III型相比,II型CRISPR系统作用机制更为简单,作用过程除crRNA和tracrRNA外只需一种Cas9蛋白,易于体外设计,故目前被广泛研究并基于此开发出一种全新的人工核酸酶系统—CRISPR/Cas9系统。The CRISPR-Cas system is an adaptive immune defense mechanism formed during the long-term evolution of bacteria, which enables bacteria to resist the invasion of foreign DNA through the RNA-mediated DNA splicing mechanism. Currently, the CRISPR/Cas system can be divided into type I, type II and type III according to the different gene sequences of Cas proteins. Compared with type I and type III, the mechanism of action of the type II CRISPR system is simpler. In addition to crRNA and tracrRNA, the action process requires only one Cas9 protein, which is easy to design in vitro. The artificial nuclease system—CRISPR/Cas9 system.

2013年,FengZhang实验室首次应用CRISPR/Cas9系统对真核细胞实行定点突变,并正式将该系统开发为一种新的基因编辑技术:即Cas9蛋白在gRNA的指导下,识别靶基因位点并对其进行特异性切割,形成双链断裂(Double-strand break,DSB)缺口,从而引发细胞自身的修复机制,在DSB部位进行非同源末端连接修复(Nonhomologous end joining,NHEJ)或同源重组修复(Homology-directed repair,HR),实现基因组高效编辑的目的(Gilbert,L.A.,Larson,M.H.,Morsut,L.et al,CRISPR-mediated modular RNA-guidedregulation of transcription in eukaryotes.Cell,2013,154,442-451.)。但目前CRISPR/Cas9系统仍存在一定的缺陷,例如对于多于5个位点的基因组序列同时进行编辑时,阳性克隆率<60%。且由于基因组被编辑的细胞中转入了gRNA编码载体,由于选择标记的存在导致该细胞无法进行第二次基因组编辑。In 2013, FengZhang's laboratory applied the CRISPR/Cas9 system to perform site-directed mutagenesis in eukaryotic cells for the first time, and formally developed the system as a new gene editing technology: that is, under the guidance of gRNA, the Cas9 protein recognizes target gene loci and It is specifically cut to form a double-strand break (DSB) gap, thereby triggering the cell's own repair mechanism to perform non-homologous end joining (NHEJ) or homologous recombination at the DSB site. Repair (Homology-directed repair, HR), to achieve the purpose of efficient genome editing (Gilbert, L.A., Larson, M.H., Morsut, L. et al, CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell, 2013, 154, 442- 451.). However, the current CRISPR/Cas9 system still has certain defects. For example, when the genome sequence of more than 5 sites is edited simultaneously, the positive clone rate is less than 60%. And because the gRNA encoding vector is transferred into the edited cell, the cell cannot perform the second genome editing due to the presence of the selectable marker.

发明内容SUMMARY OF THE INVENTION

本发明的目的是提供一种用于CRISPR/Cas9为内核的酵母基因组编辑方法,该基因组编辑技术解决了通用的CRISPR/Cas9技术多位点同时编辑效率低、基因组被修改的菌株无法进行二次编辑的问题,并将该方法应用于酿酒酵母基因组的编辑修改。The purpose of the present invention is to provide a yeast genome editing method using CRISPR/Cas9 as the core, the genome editing technology solves the problem that the general CRISPR/Cas9 technology has low efficiency of simultaneous editing at multiple sites, and strains whose genomes have been modified cannot undergo secondary editing. editing and applying this method to the editing modification of the Saccharomyces cerevisiae genome.

本发明的目的通过人为可控的丢失gRNA编码载体,实现筛选标记的回收,从而方便进行新一轮的gRNA编码载体导入和基因组高效编辑。该方法通过将多位点的基因组编辑分解为多轮基因组编辑,有效的解决了多位点基因组编辑阳性克隆率不高的瓶颈问题。具体来讲,本发明通过以下技术方案实现:The purpose of the present invention is to achieve the recovery of the selection marker by artificially controllable loss of the gRNA encoding vector, thereby facilitating a new round of gRNA encoding vector introduction and efficient genome editing. This method effectively solves the bottleneck problem of low positive clone rate of multi-site genome editing by decomposing multi-site genome editing into multiple rounds of genome editing. Specifically, the present invention is achieved through the following technical solutions:

一种酵母基因组编辑载体的构建方法,以gRNA编码质粒P为出发载体,在该载体的复制起始点Ori两端分别引入同向34bp的LoxP序列,并在质粒P骨架(backbone)位置引入Cre重组酶(Cyclization Recombination Enzyme)基因表达盒,获得酵母基因组编辑载体(P-CL载体)。A method for constructing a yeast genome editing vector, using gRNA encoding plasmid P as a starting vector, introducing 34bp LoxP sequences in the same direction at both ends of Ori, the origin of replication of the vector, and introducing Cre recombination at the position of the plasmid P backbone (backbone) Enzyme (Cyclization Recombination Enzyme) gene expression cassette to obtain yeast genome editing vector (P-CL vector).

所述LoxP位点为34bp大小的基因序列,包括被8bp间隔的两个13bp反向重复。优选地,所述LoxP序列如SEQ ID NO:1所示。The LoxP site is a gene sequence of 34 bp in size, including two 13 bp inverted repeats separated by 8 bp. Preferably, the LoxP sequence is shown in SEQ ID NO:1.

优选地,所述Cre重组酶基因具有如SEQ ID NO:2所示的核苷酸序列。Preferably, the Cre recombinase gene has the nucleotide sequence shown in SEQ ID NO:2.

优选地,所述出发载体为P426(Addgene公司的商业化质粒p426-SNR52p-gRNA.CAN1.Y-SUP4t),并在P426的KpnI位点插入Cre重组酶表达盒。Preferably, the starting vector is P426 (commercialized plasmid p426-SNR52p-gRNA.CAN1.Y-SUP4t of Addgene Company), and the Cre recombinase expression cassette is inserted into the KpnI site of P426.

优选地,所述表达盒中的启动子为半乳糖诱导的GAL1启动子,终止子为CYC1转录终止子。Preferably, the promoter in the expression cassette is a galactose-induced GAL1 promoter, and the terminator is a CYC1 transcription terminator.

上述方法构建的P-CL载体在以CRISPR/Cas9为媒介的基因编辑中的应用,在P-CL载体编码的gRNA介导下,完成酵母基因组编辑后,诱导Cre重组酶表达,Cre识别Ori两侧的LoxP序列,删除P-CL载体上的Ori位点。丧失了复制起始位点的载体因不能正常复制,最终在酵母细胞分裂过程中丢失,意味着P-CL筛选标记丢失,实现了筛选标记的有效回收。具体包括以下步骤:The application of the P-CL vector constructed by the above method in gene editing mediated by CRISPR/Cas9, under the mediation of the gRNA encoded by the P-CL vector, after the yeast genome editing is completed, the expression of Cre recombinase is induced, and Cre recognizes Ori two. flanking the LoxP sequence, delete the Ori site on the P-CL vector. The vector that has lost the origin of replication cannot replicate normally and is eventually lost during yeast cell division, which means that the P-CL selectable marker is lost, and efficient recovery of the selectable marker is achieved. Specifically include the following steps:

1)以构建的酵母基因组编辑载体出发载体,构建含有靶向gRNA基因序列的表达载体;1) Starting the vector with the constructed yeast genome editing vector, constructing an expression vector containing the targeting gRNA gene sequence;

2)将步骤1)得到gRNA表达载体导入含有相应Cas9系统的酿酒酵母,得到重组酿酒酵母,并在CRISPR/Cas9系统引导下实现基因组编辑;2) introducing the gRNA expression vector obtained in step 1) into Saccharomyces cerevisiae containing the corresponding Cas9 system, obtaining a recombinant Saccharomyces cerevisiae, and realizing genome editing under the guidance of the CRISPR/Cas9 system;

3)基因组编辑完成后,将重组酿酒酵母置于半乳糖培养基中诱导培养,阻断载体的自我复制,实现传代质粒丢失;3) After the genome editing is completed, the recombinant Saccharomyces cerevisiae is placed in a galactose medium to induce culture, block the self-replication of the vector, and realize the loss of the passaged plasmid;

4)筛选质粒丢失的重组酿酒酵母,导入新的gRNA表达载体进行下一轮基因组编辑。4) Screen the recombinant Saccharomyces cerevisiae with lost plasmid, and introduce a new gRNA expression vector for the next round of genome editing.

优选地,重复步骤3)、4)实现多轮基因组编辑。Preferably, steps 3) and 4) are repeated to achieve multiple rounds of genome editing.

优选地,步骤3)所述重组酿酒酵母在半乳糖培养基中诱导培养的条件:温度25-32℃,时间36-42h,转速150-300rpm。Preferably, in step 3), the conditions for the induction and culture of the recombinant Saccharomyces cerevisiae in galactose medium are: temperature 25-32° C., time 36-42 h, and rotating speed 150-300 rpm.

优选地,所述酿酒酵母为S.cerevisiaeBJ5464菌株。Preferably, the Saccharomyces cerevisiae is S. cerevisiae BJ5464 strain.

所述的Cas9系统,优选为Addgene公司的商业化质粒p414-TEF1p-Cas9-CYC1t。The Cas9 system is preferably the commercial plasmid p414-TEF1p-Cas9-CYC1t of Addgene Company.

与现有技术相比,本发明具有如下有益效果:Compared with the prior art, the present invention has the following beneficial effects:

本发明在gRNA表达载体上导入Cre/LoxP系统,使得质粒在完成基因的敲除工作后,在半乳糖诱导下表达Cre重组酶并切割掉Ori序列从而实现自我丢失(Ori序列是质粒的复制起始位点,包括表达由质粒编码的复制必需的RNA和蛋白质的基因,如缺少Ori序列则无法在细胞中进行复制),实现遗传标记的回收。结果表明,在质粒P426的复制起始位点Ori两端引入同向LoxP序列,在重组酶Cre的作用下,质粒丢失率超过99.9%,藉此完成了P426载体筛选标记的回收。进一步的,基因组编辑过的工程菌细胞可引入另一gRNA表达载体再次进行基因组编辑,从而实现高效(阳性率接近100%)、多轮(无限制)基因组编辑。In the present invention, the Cre/LoxP system is introduced into the gRNA expression vector, so that the plasmid expresses Cre recombinase under the induction of galactose and cuts off the Ori sequence after completing the knockout work of the gene, so as to realize self-loss (the Ori sequence is the starting point of the replication of the plasmid). Initiation sites, including genes that express RNAs and proteins necessary for replication encoded by plasmids, such as the lack of Ori sequences, cannot replicate in cells) to achieve the recovery of genetic markers. The results showed that the homologous LoxP sequences were introduced at both ends of Ori, the origin of replication of plasmid P426. Under the action of recombinase Cre, the plasmid loss rate exceeded 99.9%, thereby completing the recovery of the selection marker of P426 vector. Further, another gRNA expression vector can be introduced into the genome-edited engineered bacterial cells for genome editing again, thereby achieving high-efficiency (positive rate close to 100%) and multiple rounds (unrestricted) genome editing.

附图说明Description of drawings

图1为P426-CL质粒图谱。Figure 1 is the P426-CL plasmid map.

具体实施方式Detailed ways

下述实施例中所用方法如无特别说明均为常规分子克隆方法。The methods used in the following examples are conventional molecular cloning methods unless otherwise specified.

实施例1酵母基因组编辑通用载体的构建Example 1 Construction of universal vector for yeast genome editing

以Addgene公司商业化质粒p426-SNR52p-gRNA.CAN1.Y-SUP4t(简称为P426)为出发载体,在该载体Ori位点两端引入同向LoxP序列(SEQ ID NO:1),并在P426的KpnI位点整合入完整的重组酶Cre表达盒。具体实施如下:Take the commercialized plasmid p426-SNR52p-gRNA.CAN1.Y-SUP4t (referred to as P426) of Addgene Company as the starting vector, and introduce the same direction LoxP sequence (SEQ ID NO: 1) at both ends of the Ori site of the vector, and in P426 The KpnI site was integrated into the complete recombinase Cre expression cassette. The specific implementation is as follows:

1.复制起始位点Ori两端LoxP序列的引入1. Introduction of LoxP sequences at both ends of Ori at the origin of replication

以P426载体为模板,以P1(5′-TCGTATAGCATACATTATACGAAGTTATACTTATATGCGTCTATTTATGT AG-3′)/P2(5'-GTATAGCATACATTATACGAAGTTATTCCCCGAAAAGTGCCACCTGA-3')引物对扩增获得LoxP1片段,利用II重组克隆试剂盒(南京诺唯赞生物科技有限公司),将LoxP1自身重组拼接环化获得质粒P426-LoxP1。Using the P426 vector as a template, the LoxP1 fragment was obtained by amplifying the primer pair P1(5'-TCGTATAGCATACATTATACGAAGTTATACTTATATGCGTCTATTTATGT AG-3')/P2(5'-GTATAGCATACATTATACGAAGTTATTCCCCGAAAAGTGCCACCTGA-3'). II recombinant cloning kit (Nanjing Novizan Biotechnology Co., Ltd.), the plasmid P426-LoxP1 was obtained by circularizing LoxP1 by self-recombination and splicing.

进一步的,以P426-LoxP1为模板,以P3(5'-TCGTATAATGTATGCTATACGAAGTTATAATGTGCGCGGAACCCCTAT-3')/P4(5'-GTATAATGTATGCTATACGAAGTTATACGCATTTAAGCATAAACAC-3')引物对扩增获得LoxP2片段,用II重组克隆试剂盒将LoxP2自身重组拼接环化获得复制起始位点Ori两端引入同向LoxP序列的载体P426-LoxP。Further, using P426-LoxP1 as a template, using P3(5'-TCGTATAATGTATGCTATACGAAGTTATAATGTGCGCGGAACCCCTAT-3')/P4(5'-GTATAATGTATGCTATACGAAGTTATACGCATTTAAGCATAAACAC-3') primer pair to amplify to obtain LoxP2 fragment. II Recombination Cloning Kit The self-recombination splicing of LoxP2 is circularized to obtain the vector P426-LoxP that introduces the same direction LoxP sequence at both ends of the origin of replication Ori.

2.重组酶Cre表达盒构建2. Construction of Recombinase Cre Expression Cassette

在TaKaRa公司合成重组酶Cre基因(SEQ ID NO:2),插入到pUC57载体上,标记为pUC57-Cre,在该酶编码基因上下游分别引入SacI和SmaI酶切位点。从Invitrogen公司购得含有启动子GAL1和终止子CYC1的酿酒酵母表达载体pYES2。The recombinase Cre gene (SEQ ID NO: 2) was synthesized in TaKaRa company, inserted into the pUC57 vector, marked as pUC57-Cre, and SacI and SmaI restriction sites were respectively introduced upstream and downstream of the enzyme encoding gene. Saccharomyces cerevisiae expression vector pYES2 containing promoter GAL1 and terminator CYC1 was purchased from Invitrogen.

以pYES2为模板,P5(5'-GTTACCGAATTCTTTACCGTCGACAGTACGGATTAGAAGCCGCC-3')/P6(5'-GGTAACGAGCTCGGTACCAAG CTTAATATTC-3′)引物对扩增启动子GAL1片段,在GAL1片段上下游分别引入EcoRI和SacI酶切位点,分别用EcoRI和SacI双酶切YEp352和启动子GAL1片段,通过常规酶切、连接和转化,获得含有启动子GAL1的YEp352-PGAL1Using pYES2 as the template, the primer pair P5(5'-GTTACCGAATTCTTTACCGTCGACAGTACGGATTAGAAGCCGCC-3')/P6(5'-GGTAACGAGCTCGGTACCAAG CTTAATATTC-3') was used to amplify the promoter GAL1 fragment, and EcoRI and SacI restriction sites were introduced upstream and downstream of the GAL1 fragment, respectively. , YEp352 and promoter GAL1 fragments were digested with EcoRI and SacI respectively, and YEp352-P GAL1 containing promoter GAL1 was obtained by conventional digestion, ligation and transformation.

以pYES2为模板,P7(5′-TCGCTCTCTAGAGGGCCGCATCATGTAATTAGTTA-3′)/P8(5′-GTTACCCTGCAGTTTACCCTCGAGGCAAATTAAAGCCTTCGAGCGT-3′)引物对扩增终止子CYC1片段,在CYC1片段上下游分别引入XbaI和PstI酶切位点,分别用XbaI和PstI双酶切YEp352-PGAL1和终止子CYC1片段,通过常规酶切、连接和转化,获得含有终止子CYC1的YEp352-PGAL1-TCYC1Using pYES2 as the template, the primer pair P7(5′-TCGCTCTCTAGAGGGCCGCATCATGTAATTAGTTA-3′)/P8(5′-GTTACCCTGCAGTTTACCCTCGAGGCAAATTAAAGCCTTCGAGCGT-3′) was used to amplify the terminator CYC1 fragment, and XbaI and PstI restriction sites were introduced upstream and downstream of the CYC1 fragment, respectively. The YEp352-P GAL1 and terminator CYC1 fragments were digested with XbaI and PstI respectively, and YEp352-P GAL1 -T CYC1 containing the terminator CYC1 was obtained by conventional digestion, ligation and transformation.

以pUC57-Cre为模板,P9(5′-GTTACCGAGCTCGTTACCGGATCCATGAGTAACCTGCTGACAGTG-3′)/P10(5′-GAGCGATCTAGAGAGCGACCCGGGTTAATCCCCATCTTCTAATAACC-3′)引物对扩增重组酶Cre片段,分别用SacI和SmaI双酶切pUC57-Cre和YEp352-PGAL1-TCYC1载体,通过常规酶切、连接和转化,获得含有重组酶Cre表达盒的YEp352-PGAL1-Cre-TCYC1。其中重组酶Cre表达受启动子GAL1调控。Using pUC57-Cre as template, P9(5′-GTTACCGAGCTCGTTACCGGATCCATGAGTAACCTGCTGACAGTG-3′)/P10(5′-GAGCGATCTAGAGAGCGACCCGGGTTAATCCCCATCTTCTAATAACC-3′) primer pair was used to amplify the recombinase Cre fragment, and pUC57-Cre and YEp352 were digested with SacI and SmaI, respectively. -P GAL1 -T CYC1 vector, through conventional digestion, ligation and transformation, to obtain YEp352-P GAL1 -Cre-T CYC1 containing the recombinase Cre expression cassette. The expression of recombinase Cre is regulated by the promoter GAL1.

3.酵母基因组编辑通用载体p426-CL的构建3. Construction of yeast genome editing universal vector p426-CL

以YEp352-PGAL1-Cre-TCYC1为模板,P11(5′-CTTTAATTTGCGGCCGGTACCAGTACGGATTAGAAGCC-3′)/P12(5′-CTATAGGGCGAATTGGGTACCGCAAATTAAAGCCTTCGAG-3′)引物对扩增Cre表达盒片段PGAL1-Cre-TCYC1Using YEp352-P GAL1 -Cre-T CYC1 as a template, the P11(5'-CTTTAATTTGCGGCCGGTACCAGTACGGATTAGAAGCC-3')/P12(5'-CTATAGGGCGAATTGGGTACCGCAAATTAAAGCCTTCGAG-3') primer pair was used to amplify the Cre expression cassette fragment P GAL1 -Cre-T CYC1 .

II重组克隆试剂盒将PCR产物基因片段PGAL1-Cre-TCYC1和KpnI线性化的P426-LoxP同源重组,获得酵母基因组编辑通用载体p426-CL。实施例2酿酒酵母基因组牻牛儿基牻牛儿基焦磷酸合酶(Geranylgeranyl pyrophosphate synthase,BTS1)和转录调控基因(Heme-dependent repressor of hypoxic genes,ROX1)基因敲除use II Recombination Cloning Kit The PCR product gene fragment P GAL1 -Cre-T CYC1 and KpnI linearized P426-LoxP homologous recombination to obtain yeast genome editing universal vector p426-CL. Example 2 Genome of Saccharomyces cerevisiae Geranylgeranyl pyrophosphate synthase (BTS1) and Heme-dependent repressor of hypoxic genes (ROX1) gene knockout

以实施例1构建的载体P426-CL作为gRNA表达载体构建骨架,实现酵母基因组BTS1和ROX1基因的敲除。The vector P426-CL constructed in Example 1 was used as the gRNA expression vector to construct the backbone to achieve the knockout of the BTS1 and ROX1 genes in the yeast genome.

1.PCR扩增bts1-gRNA、rox1-gRNA表达载体片段1. PCR amplification of bts1-gRNA and rox1-gRNA expression vector fragments

以P426-CL为模板,分别以P13(5′-TAATAATGGTTTCTTAGTATGA-3′)/P14(5′-AACAGGATCATTATTGATCAGATCATTTATCTTTCACTGC-3′)和P15(5′-TGATCAATAATGATCCTGTTGTTTTAGAGCTAGAAATA-3′)/P16(5′-ACTAAGAAACCATTATTATCAT-3′)为引物对,分别扩增获得BTS1-1和BTS1-2片段。Using P426-CL as template, P13(5′-TAATAATGGTTTCTTAGTATGA-3′)/P14(5′-AACAGGATCATTATTGATCAGATCATTTATCTTTCACTGC-3′) and P15(5′-TGATCAATAATGATCCTGTTGTTTTAGAGCTAGAAAATA-3′)/P16(5′-ACTAAGAAACCATTATTATCAT-3′) ') is a primer pair, respectively amplified to obtain BTS1-1 and BTS1-2 fragments.

以P426-CL为模板,分别以P13/P17(5′-TTCGTCTATTAAGATCCTGTGATCATTTATCTTTCACTG-3′)和P16/P18(5′-ACAGGATCTTAATAGACGAAGTTTTAGAGCTAGAAATA-3′)/P16为引物对,分别扩增获得ROX1-1和ROX1-2片段。Using P426-CL as the template and P13/P17 (5′-TTCGTCTATTAAGATCCTGTGATCATTTATCTTTCACTG-3′) and P16/P18 (5′-ACAGGATCTTAATAGACGAAGTTTTTAGAGCTAGAAATA-3′)/P16 as primer pairs, ROX1-1 and ROX1- 2 Fragments.

2.含有BTS1引导RNA序列的重组载体的构建2. Construction of recombinant vector containing BTS1 guide RNA sequence

利用II重组克隆试剂盒,将BTS1-1和BTS1-2两个片段重组,获得携带有BTS1引导RNA序列的重组载体P426-CL-BTS1。use II Recombination cloning kit, recombination of BTS1-1 and BTS1-2 fragments to obtain the recombinant vector P426-CL-BTS1 carrying the BTS1 guide RNA sequence.

3.含有ROX1引导RNA序列的重组载体的构建3. Construction of recombinant vector containing ROX1 guide RNA sequence

利用II重组克隆试剂盒,将ROX1-1和ROX1-2两个片段重组,获得携带有ROX1引导RNA序列的重组载体P426-CL-ROX1。use II Recombination Cloning Kit, the two fragments of ROX1-1 and ROX1-2 were recombined to obtain the recombinant vector P426-CL-ROX1 carrying the ROX1 guide RNA sequence.

4.PCR扩增bts1-rox1-gRNA表达载体片段4. PCR amplification of bts1-rox1-gRNA expression vector fragment

以P426-CL-BTS1为模板,以P13/P19(5′-CTAATTACATGACTCGA-3′)为引物对,扩增获得含有bts1靶序列的BTS1片段。以P426-CL-ROX1为模板,以P16/P20(5′-TCGAGTCATGTAATTAGTCTTTGAAAAGATAATGTATGA-3′)/P16为引物对,扩增获得含有rox1靶向序列的ROX1片段。Using P426-CL-BTS1 as a template and P13/P19 (5'-CTAATTACATGACTCGA-3') as a primer pair, a BTS1 fragment containing the bts1 target sequence was obtained by amplification. Using P426-CL-ROX1 as a template and P16/P20 (5′-TCGAGTCATGTAATTAGTCTTTGAAAAGATAATGTATGA-3′)/P16 as a primer pair, the ROX1 fragment containing the rox1 targeting sequence was amplified.

5.同时含有BTS1引导RNA序列及ROX1引导RNA序列的重组载体的构建5. Construction of recombinant vector containing both BTS1 guide RNA sequence and ROX1 guide RNA sequence

利用II重组克隆试剂盒,将BTS1和ROX1两个片段重组,获得携带有BTS1引导RNA序列及ROX1引导RNA序列的重组载体P426-CL-BTS1-ROX1。use II Recombination cloning kit, recombination of BTS1 and ROX1 fragments to obtain the recombinant vector P426-CL-BTS1-ROX1 carrying the BTS1 guide RNA sequence and the ROX1 guide RNA sequence.

6.酵母基因组BTS1和ROX1位点编辑验证6. Yeast genome BTS1 and ROX1 editing validation

将P426-CL-BTS1-ROX1和p414-TEF1p-Cas9-CYC1t(Addgene公司)质粒同时转入宿主酿酒酵母S.cerevisiae BJ5464感受态细胞中,在Cas9蛋白协助下,BTS1基因gRNA和ROX1基因gRNA序列分别定位,实现酵母基因组BTS1基因、ROX1基因的敲除,获得突变株S.cerevisiae BJ5464ΔBTS1ΔROX1/P426-CL-BTS1-ROX1。The P426-CL-BTS1-ROX1 and p414-TEF1p-Cas9-CYC1t (Addgene) plasmids were simultaneously transferred into the host S. cerevisiae BJ5464 competent cells. With the assistance of Cas9 protein, the BTS1 gene gRNA and ROX1 gene gRNA sequence The BTS1 gene and the ROX1 gene in the yeast genome were knocked out respectively, and the mutant strain S.cerevisiae BJ5464ΔBTS1ΔROX1/P426-CL-BTS1-ROX1 was obtained.

随机挑选10个酿酒酵母转化子,以P21(5′-ATGGAGGCCAAGATAGATGAGC-3′)/P22(5′-ATGAAAGGAACCAACGAATGGC-3′)和P23(5′-TCCTAAATCCTCTACACCTAAG-3′)/P24(5′-ATCATGCGTCAAAGGTAGTCCA-3′)引物对进行菌落PCR扩增,并将PCR产物送测。测序结果显示,10个转化子的目的基因BTS1位点和ROX1位点均发生突变,阳性突变率为10/10。该结果表明,复制起始位点两端LoxP序列和Cre表达盒的引入,并未影响CRISPR/Cas9系统对酵母基因组的编辑能力。10 Saccharomyces cerevisiae transformants were randomly selected and treated with P21(5'-ATGGAGGCCAAGATAGATGAGC-3')/P22(5'-ATGAAAGGAACCAACGAATGGC-3') and P23(5'-TCCTAAATCCTCTACACCTAAG-3')/P24(5'-ATCATGCGTCAAAGGTAGTCCA- 3') The primer pair is used for colony PCR amplification, and the PCR product is sent for testing. The sequencing results showed that the BTS1 and ROX1 sites of the target genes of 10 transformants were mutated, and the positive mutation rate was 10/10. The results showed that the introduction of the LoxP sequences at both ends of the replication origin and the Cre expression cassette did not affect the editing ability of the yeast genome by the CRISPR/Cas9 system.

实施例3酿酒酵母S.cerevisiae BJ5464ΔBTS1ΔROX1基因组ERG9基因、ypl062w基因和yjl064w基因编辑Example 3 Saccharomyces cerevisiae S. cerevisiae BJ5464ΔBTS1ΔROX1 genome editing of ERG9 gene, ypl062w gene and yjl064w gene

以实施例1中构建的P426-CL为模板作为gRNA表达载体构建骨架,实现酵母基因组ERG9基因、ypl062w基因和yjl064w基因的编辑。Using the P426-CL constructed in Example 1 as a template as a gRNA expression vector to construct a backbone, the editing of the yeast genome ERG9 gene, ypl062w gene and yj1064w gene was realized.

1.S.cerevisiae BJ5464ΔBTS1ΔROX1/P426-CL-BTS1-ROX1细胞内载体P426-CL-BTS1-ROX1的丢失1. Loss of S. cerevisiae BJ5464ΔBTS1ΔROX1/P426-CL-BTS1-ROX1 intracellular vector P426-CL-BTS1-ROX1

挑取S.cerevisiae BJ5464ΔBTS1ΔROX1/P426-CL-BTS1-ROX1单菌落,接种于SG/ΔTrp液体培养基(半乳糖20.0g/L,DO Supplement 0.62g/L,无氨基酵母氮源YNB 6.7g/L,Ura 0.02g/L,Leu0.06g/L),在30℃、220rpm下培养36h。取菌液稀释106倍后并涂布于含有1g/L 5-FOA的SD/ΔTrp固体平板上(葡萄糖20.0g/L,琼脂20.0g/L,DO Supplement 0.62g/L,无氨基酵母氮源YNB 6.7g/L,Ura 0.02g/L,Leu 0.06g/L),在30℃下培养36h,通过5-FOA负筛选,平板上长出来的菌落即是不含载体P426-CL-BTS1-ROX1的S.cerevisiae BJ5464ΔBTS1ΔROX1。Pick a single colony of S.cerevisiae BJ5464ΔBTS1ΔROX1/P426-CL-BTS1-ROX1 and inoculate it in SG/ΔTrp liquid medium (galactose 20.0g/L, DO Supplement 0.62g/L, amino-free yeast nitrogen source YNB 6.7g/L , Ura 0.02g/L, Leu 0.06g/L), cultured at 30°C and 220rpm for 36h. The bacterial solution was diluted 10 times and spread on SD/ΔTrp solid plate containing 1g/L 5-FOA (glucose 20.0g/L, agar 20.0g/L, DO Supplement 0.62g/L, no amino yeast nitrogen source YNB 6.7g/L, Ura 0.02g/L, Leu 0.06g/L), cultured at 30°C for 36h, through 5-FOA negative screening, the colonies grown on the plate are those without the carrier P426-CL-BTS1 - S. cerevisiae BJ5464ΔBTS1ΔROX1 of ROX1.

2.PCR扩增erg9-gRNA、ypl062w-gRNA和yjl064w-gRNA表达载体片段以P426-CL为模板,分别以P13/P25(5′-ATGCAAAGTGCAGTGGAAAAGATCATTTATCTTTCACTG-3′)和P16/P26(5′-TTTTCCACTGCACTTTGCATGTTTTAGAGCTAGAAATAGCA-3′)为引物对,分别扩增获得ERG9-1和ERG9-2片段。2. PCR amplification of erg9-gRNA, ypl062w-gRNA and yjl064w-gRNA expression vector fragments using P426-CL as the template, P13/P25 (5′-ATGCAAAGTGCAGTGGAAAAGATCATTTATCTTTCACTG-3′) and P16/P26 (5′-TTTTCCACTGCACTTTGCATGTTTTAGAGCTAGAAATAGCA- 3') is a primer pair, respectively amplified to obtain ERG9-1 and ERG9-2 fragments.

以P426-CL为模板,分别以P13/P27(5′-CATCAGCCACGGCGACGTGCGATCATTTATCTTTCACTGC-3′)和P16/P28(5′-GCACGTCGCCGTGGCTGATGGTTTTAGAGCTAGAAATA-3′)为引物对,分别扩增获得ypl062w-1和ypl062w-2片段。Using P426-CL as the template, P13/P27 (5′-CATCAGCCACGGCGACGTGCGATCATTTATCTTTCACTGC-3′) and P16/P28 (5′-GCACGTCGCCGTGGCTGATGGTTTTAGAGCTAGAAATA-3′) were used as primer pairs to amplify the ypl062w-1 and ypl062w-2 fragments respectively. .

以P426-CL为模板,分别以P13/P29(5′-AGATGAACTCACGCTGTCGTGATCATTTATCTTTCACTGC-3′)和P16/P30(5′-ACGACAGCGTGAGTTCATCTGTTTTAGAGCTAGAAATA-3′)为引物对,分别扩增获得yjl064w-1和yjl064w-2片段。Using P426-CL as a template, P13/P29 (5′-AGATGAACTCACGCTGTCGTGATCATTTATCTTTCACTGC-3′) and P16/P30 (5′-ACGACAGCGTGAGTTCATCTGTTTTAGAGCTAGAAATA-3′) were used as primer pairs to amplify and obtain yj1064w-1 and yj1064w-2 fragments respectively. .

3.含有ERG9引导RNA序列的重组载体的构建3. Construction of recombinant vector containing ERG9 guide RNA sequence

利用II重组克隆试剂盒,将ERG9-1和ERG9-2两个片段重组,获得携带有ERG9引导RNA序列的重组载体P426-CL-ERG9。use II recombination cloning kit, the two fragments of ERG9-1 and ERG9-2 were recombined to obtain the recombinant vector P426-CL-ERG9 carrying the ERG9 guide RNA sequence.

4.含有ypl062w引导RNA序列的重组载体的构建4. Construction of recombinant vector containing ypl062w guide RNA sequence

利用II重组克隆试剂盒,将ypl062w-1和ypl062w-2两个片段重组,获得携带有ypl062w引导RNA序列的重组载体P426-CL-ypl062w。use II recombination cloning kit, recombination of two fragments ypl062w-1 and ypl062w-2, to obtain the recombinant vector P426-CL-ypl062w carrying the ypl062w guide RNA sequence.

5.含有yjl064w引导RNA序列重组载体的构建5. Construction of recombinant vector containing yjl064w guide RNA sequence

利用II重组克隆试剂盒,将yjl064w-1和yjl064w-2两个片段重组,获得携带有yjl064w引导RNA序列的重组载体P426-CL-yjl064w。use II recombination cloning kit, recombination of two fragments yjl064w-1 and yjl064w-2, to obtain the recombinant vector P426-CL-yjl064w carrying the yjl064w guide RNA sequence.

6.PCR扩增ERG9和ypl062w片段6. PCR amplification of ERG9 and ypl062w fragments

以P426-CL-ERG9为模板,以P13/P19为引物对,扩增获得含有erg9靶序列的ERG9片段。以P426-CL-ypl062w为模板,以P20/P16为引物对,扩增获得含有ypl062w靶向序列的ypl062w片段。Using P426-CL-ERG9 as the template and P13/P19 as the primer pair, the ERG9 fragment containing the erg9 target sequence was obtained by amplification. Using P426-CL-ypl062w as a template and P20/P16 as a primer pair, a ypl062w fragment containing the ypl062w targeting sequence was obtained by amplification.

7.含有ERG9引导RNA序列及ypl062w引导RNA序列的重组载体的构建7. Construction of recombinant vector containing ERG9 guide RNA sequence and ypl062w guide RNA sequence

利用II重组克隆试剂盒,将ERG9和ypl062w两个片段重组,获得携带有ERG9引导RNA序列及ypl062w引导RNA序列的重组载体P426-CL-ERG9-ypl062w。use II recombination cloning kit, the two fragments of ERG9 and ypl062w were recombined to obtain the recombinant vector P426-CL-ERG9-ypl062w carrying the ERG9 guide RNA sequence and the ypl062w guide RNA sequence.

8.PCR扩增ERG9-ypl062w和ypj064w片段8. PCR amplification of ERG9-ypl062w and ypj064w fragments

以P426-CL-ERG9-ypl062w为模板,以P31(5′-GAACAAAAGCTGGAGCT-3′)/P32(5'-CCTTTAGTGAGGGTTAA-3′)为引物对,扩增获得同时含有erg9靶序列和ypl062w靶序列的ERG9-ypl062w片段。以P426-CL-ypj064w为模板,以P33(5'-TTAACCCTCACTAAAGGTCTTTGAAAAGATAATGTATGA-3′)/P34(5′-AGCTCCAGCTTTTGTTCAAGACATAAAAAACAAAAAAAG-3′)为引物对,扩增获得含有ypj064w靶向序列的ypj064w片段。Using P426-CL-ERG9-ypl062w as the template and P31(5′-GAACAAAAGCTGGAGCT-3′)/P32(5′-CCTTTAGTGAGGGTTAA-3′) as the primer pair, amplify the erg9 target sequence and the ypl062w target sequence. ERG9-ypl062w fragment. Using P426-CL-ypj064w as the template and P33(5'-TTAACCCTCACTAAAGGTCTTTGAAAAGATAATGTATGA-3')/P34(5'-AGCTCCAGCTTTTTTCAAGACATAAAAAACAAAAAAAG-3') as the primer pair, the ypj064w fragment containing the ypj064w targeting sequence was amplified.

9.同时含有ERG9、ypl062w和ypj064w三个基因引导RNA序列的重组载体的构建9. Construction of the recombinant vector containing the three gene guide RNA sequences of ERG9, ypl062w and ypj064w at the same time

利用II重组克隆试剂盒,将ERG9-ypl062w和ypj064w两个片段重组,获得携带有BTS1引导RNA序列、ROX1引导RNA序列及ypj064w引导RNA序列的重组载体P426-CL-ERG9-ypl062w-ypj064w。use II Recombination Cloning Kit, the two fragments of ERG9-ypl062w and ypj064w were recombined to obtain the recombinant vector P426-CL-ERG9-ypl062w-ypj064w carrying the BTS1 guide RNA sequence, the ROX1 guide RNA sequence and the ypj064w guide RNA sequence.

10.酵母基因组ROX1位点、ypl062w位点和ypj064w位点编辑验证10. Yeast genome ROX1 site, ypl062w site and ypj064w site editing verification

将P426-CL-ERG9-ypl062w-ypj064w和p414-TEF1p-Cas9-CYC1t质粒同时转入宿主酿酒酵母S.cerevisiae BJ5464ΔBTS1-ΔROX1感受态细胞中,在Cas9蛋白协助下,ROX1基因gRNA序列、YPL062W基因序列和ypj064w基因序列分别定位,实现酵母基因组ROX1基因、ypl062w基因和ypj064w基因的敲除,获得突变株S.cerevisiae BJ5464ΔBTS1ΔROX1ΔERG9Δypl062wΔypj064w/P426-CL-ERG9-ypl062w-ypj064w。The P426-CL-ERG9-ypl062w-ypj064w and p414-TEF1p-Cas9-CYC1t plasmids were simultaneously transferred into the host S. cerevisiae BJ5464ΔBTS1-ΔROX1 competent cells, with the assistance of Cas9 protein, the ROX1 gene gRNA sequence, YPL062W gene sequence and ypj064w gene sequences were located respectively to achieve the knockout of the yeast genome ROX1 gene, ypl062w gene and ypj064w gene, and the mutant strain S.cerevisiae BJ5464ΔBTS1ΔROX1ΔERG9Δypl062wΔypj064w/P426-CL-ERG9-ypl062w-ypj064w was obtained.

随机挑选10个酿酒酵母转化子,分别以P35(5′-CAACAACAATACCGACTTACCAT-3′)/P36(5′-CCGTCGAAACTCCATTTAGTTA-3′)、P37(ATGATAGAATTGGATTATGTAAAAGG)/P38(GTTCCCAAGAGGAGATCAATGT)和P39(ATGACACTTGTAGTATATCT)/P40(GACTCTCCCGTGATGTCCGA)引物对进行菌落PCR扩增,并将PCR产物送测。测序结果显示,10个转化子的目的基因ERG9、ypl062w和ypj064w3个位点均同时发生突变,阳性突变率为10/10。该结果表明,复制起始位点两端LoxP序列和Cre表达盒的引入,(1)未影响CRISPR/Cas9系统对酵母基因组的编辑能力;(2)可高效实现多基因分步编辑操作。10 Saccharomyces cerevisiae transformants were randomly selected and treated with P35(5′-CAACAACAATACCGACTTACCAT-3′)/P36(5′-CCGTCGAAACTCCATTTAGTTA-3′), P37(ATGATAGAATTGGATTATGTAAAAGG)/P38(GTTCCCAAGAGGAGATCAATGT) and P39(ATGACACTTGTAGTATATCT)/P40( GACTCTCCCGTGATGTCCGA) primer pair was used for colony PCR amplification, and the PCR products were sent for testing. The sequencing results showed that the target genes ERG9, ypl062w and ypj064w of 10 transformants were mutated at the same time, and the positive mutation rate was 10/10. The results show that the introduction of the LoxP sequences at both ends of the replication origin and the Cre expression cassette (1) does not affect the editing ability of the CRISPR/Cas9 system for yeast genomes; (2) can efficiently realize multi-gene step-by-step editing operations.

实施例4酿酒酵母基因组编辑载体丢失率评估Example 4 Evaluation of Saccharomyces cerevisiae genome editing vector loss rate

以S.cerevisiae BJ5464ΔBTS1/P426-CL-BTS1为研究对象,挑取单菌落,接种于SG/ΔTrp液体培养基,在30℃、220rpm下培养36小时。取菌液用血球计数板计数可知菌液细胞浓度A1为6.7×108CFU。稀释适当倍数后,取200μL稀释菌液涂布在SD/△Trp-△Ura(葡萄糖20.0g/L,琼脂20.0g/L,DO Supplement 0.62g/L,无氨基酵母氮源YNB 6.7g/L,Leu0.06g/L)固体平板上,在30℃条件下培养48小时。此时长出来的菌落是依然含有质粒P426-CL-BTS1的重组菌。统计平板上长出的菌落数,计算质粒丢失率。每个样品做3个平行。Taking S. cerevisiae BJ5464ΔBTS1/P426-CL-BTS1 as the research object, single colonies were picked, inoculated into SG/ΔTrp liquid medium, and cultured at 30°C and 220rpm for 36 hours. The bacterial solution was counted with a hemocytometer, and the cell concentration A 1 of the bacterial solution was 6.7×10 8 CFU. After diluting to an appropriate multiple, take 200 μL of the diluted bacterial solution and spread it on SD/△Trp-△Ura (glucose 20.0g/L, agar 20.0g/L, DO Supplement 0.62g/L, amino-free yeast nitrogen source YNB 6.7g/L , Leu 0.06g/L) on a solid plate, cultured at 30°C for 48 hours. The colonies grown at this time are recombinant bacteria that still contain the plasmid P426-CL-BTS1. The number of colonies grown on the plate was counted, and the plasmid loss rate was calculated. Do 3 parallels for each sample.

其中,A1表示酵母菌液细胞密度,CFU(个/mL)Among them, A 1 represents the cell density of yeast liquid, CFU (unit/mL)

A2表示平板长出来的菌落数(个)A 2 represents the number of colonies grown on the plate (units)

D表示稀释倍数D is the dilution factor

统计结果如表1所示The statistical results are shown in Table 1

表1质粒丢失率统计及计算*Table 1 Statistics and calculation of plasmid loss rate*

*酵母菌液细胞密度为6.2×108个/mL。*The cell density of yeast broth is 6.2×10 8 cells/mL.

结果表明,在质粒P426的复制起始位点Ori两端引入同向LoxP序列,在重组酶Cre的作用下,质粒丢失率超过99.9%。藉此完成了P426载体筛选标记的回收,为下一轮的CRISPR/Cas9介导的酵母基因组编辑的顺利实施提供了技术支持。The results showed that the loss rate of plasmid was over 99.9% under the action of Cre recombinase by introducing the directional LoxP sequences at both ends of Ori, the origin of replication of plasmid P426. This completes the recovery of the P426 vector selection marker, which provides technical support for the smooth implementation of the next round of CRISPR/Cas9-mediated yeast genome editing.

序列表 sequence listing

<120> 一种酵母基因组编辑载体及其构建方法和应用<120> A yeast genome editing vector and its construction method and application

<160> 2<160> 2

<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0

<210> 1<210> 1

<211> 34<211> 34

<212> DNA<212> DNA

<213> 人工序列(Artificial Sequence)<213> Artificial Sequence

<400> 1<400> 1

ataacttcgt ataatgtatg ctatacgaag ttat 34ataacttcgt ataatgtatg ctatacgaag ttat 34

<210> 2<210> 2

<211> 1032<211> 1032

<212> DNA<212> DNA

<213> 人工序列(Artificial Sequence)<213> Artificial Sequence

<400> 2<400> 2

atgagtaacc tgctgacagt gcatcagaac ttgcctgcat tacctgttga tgcaacaagt 60atgagtaacc tgctgacagt gcatcagaac ttgcctgcat tacctgttga tgcaacaagt 60

gatgaagtga gaaagaacct gatggatatg ttcagagaca gacaggcatt ttcggagcat 120gatgaagtga gaaagaacct gatggatatg ttcagagaca gacaggcatt ttcggagcat 120

acatggaaga tgcttctgag tgtttgtaga agctgggctg catggtgtaa attgaacaac 180acatggaaga tgcttctgag tgtttgtaga agctgggctg catggtgtaa attgaacaac 180

agaaagtggt tcccagcaga accagaagat gttagagatt acttgctata tcttcaggca 240agaaagtggt tcccagcaga accagaagat gttagagatt acttgctata tcttcaggca 240

agaggtctag cagtgaagac tatccagcaa catttgggac aactaaacat gcttcacaga 300agaggtctag cagtgaagac tatccagcaa catttgggac aactaaacat gcttcacaga 300

aggagtggat tgcctagacc atcagattca aatgctgtga gccttgtaat gagaagaatc 360aggagtggat tgcctagacc atcagattca aatgctgtga gccttgtaat gagaagaatc 360

aggaaagaga acgtggacgc aggtgaaaga gctaaacaag cactagcttt tgagagaacg 420aggaaagaga acgtggacgc aggtgaaaga gctaaacaag cactagcttt tgagagaacg 420

gatttcgacc aagttagatc acttatggag aattccgaca gatgtcaaga catcagaaat 480gatttcgacc aagttagatc acttatggag aattccgaca gatgtcaaga catcagaaat 480

ttggcgtttt tggggattgc gtataatacc ttgctacgta tcgccgaaat tgccaggata 540ttggcgtttt tggggattgc gtataatacc ttgctacgta tcgccgaaat tgccaggata 540

agggttaaag acatttcccg tacggacggt ggaagaatgt tgatacacat tggcagaact 600agggttaaag acatttcccg tacggacggt ggaagaatgt tgatacacat tggcagaact 600

aagaccttgg tctcgacagc aggtgttgag aaagctttat ctttgggtgt aaccaaatta 660aagaccttgg tctcgacagc aggtgttgag aaagctttat ctttgggtgt aaccaaatta 660

gtcgaaaggt ggatttccgt aagcggtgta gctgatgatc caaataatta cttattttgc 720gtcgaaaggt ggatttccgt aagcggtgta gctgatgatc caaataatta cttattttgc 720

cgtgtccgta aaaatggtgt cgccgctccg tctgctactt ctcaattatc caccagagct 780cgtgtccgta aaaatggtgt cgccgctccg tctgctactt ctcaattatc caccagagct 780

ttagaaggta tttttgaagc gactcacagg ttaatatatg gcgcgaaaga cgattctggt 840ttagaaggta tttttgaagc gactcacagg ttaatatatg gcgcgaaaga cgattctggt 840

caaaggtact tagcctggtc tggacattct gctcgtgtag gagctgctag ggatatggct 900caaaggtact tagcctggtc tggacattct gctcgtgtag gagctgctag ggatatggct 900

cgtgccgggg tttcaatacc cgaaataatg caagccggtg gctggactaa tgttaatatt 960cgtgccgggg tttcaatacc cgaaataatg caagccggtg gctggactaa tgttaatatt 960

gttatgaatt atattcgtac tttagattca gaaacaggcg ccatggtcag gttattagaa 1020gttatgaatt atattcgtac tttagattca gaaacaggcg ccatggtcag gttattagaa 1020

gatggggatt aa 1032gatggggatt aa 1032

Claims (6)

1. a kind of construction method of Yeast genome editor carrier, which is characterized in that it with gRNA encoding plasmids P is to set out carrier, The LoxP sequence of 34 bp in the same direction is introduced respectively at the both ends replication origin Ori of the carrier, and is introduced in plasmid P frame position Cre recombinase expression casette obtains Yeast genome editor carrier;
The LoxP sequence is as shown in SEQ ID NO: 1;
The Cre recombinates enzyme gene nucleotide sequence as shown in SEQ ID NO: 2;
The carrier that sets out is P426, and is inserted into Cre recombinase expression cassette in the site KpnI of P426;
Promoter in the expression cassette is the GAL1 promoter of galactolipin induction, and terminator is CYC1 transcription terminator.
2. Yeast genome editor's carrier of claim 1 the method building.
3. application of the carrier described in claim 2 in the gene editing using CRISPR/Cas9 as medium, which is characterized in that packet Include following steps:
It 1) is the carrier that sets out, expression vector of the building containing targeting gRNA gene order with the carrier of claim 2;
2) step 1) is obtained into gRNA expression vector and imports the saccharomyces cerevisiae for containing corresponding Cas9 system, obtain recombination wine brewing ferment Mother, and genome editor is realized under CRISPR/Cas9 System guides;
3) after the completion of genome editor, recombinant Saccharomyces cerevisiae is placed in Fiber differentiation in gala sugar culture-medium, blocks carrier oneself I replicates, and realizes passage plasmid loss;
4) recombinant Saccharomyces cerevisiae for screening plasmid loss imports new gRNA expression vector and carries out next round genome editor.
4. application according to claim 3, which is characterized in that repeat step 3), 4) realize more wheel genome editors.
5. application according to claim 3 or 4, which is characterized in that recombinant Saccharomyces cerevisiae described in step 3) is trained in galactolipin Support the condition of Fiber differentiation in base: temperature 25-32oC, time 36-42h, revolving speed 150-300rpm.
6. application according to claim 3 or 4, which is characterized in that the saccharomyces cerevisiae isS.cerevisiaeBJ5464; The Cas9 system is plasmid p414-TEF1p-Cas9-CYC1t.
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