TW202219275A - Production of glcnac containing bioproducts in a cell - Google Patents
Production of glcnac containing bioproducts in a cell Download PDFInfo
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- TW202219275A TW202219275A TW110129455A TW110129455A TW202219275A TW 202219275 A TW202219275 A TW 202219275A TW 110129455 A TW110129455 A TW 110129455A TW 110129455 A TW110129455 A TW 110129455A TW 202219275 A TW202219275 A TW 202219275A
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- cell
- acetylglucosamine
- udp
- glcnac
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- 238000004519 manufacturing process Methods 0.000 title claims abstract description 89
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Abstract
Description
本發明是屬於合成生物學和代謝工程之技術領域。更具體而言,本發明是屬於代謝工程細胞的發酵之技術領域。本發明描述一種藉由細胞產生在還原端具有N-乙醯葡萄糖胺單元(N-acetylglucosamine unit)的雙醣或寡醣以及從培養物中純化該雙醣或寡醣的方法。此外,本發明提供一種代謝工程化的細胞,其用於產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。The present invention belongs to the technical field of synthetic biology and metabolic engineering. More specifically, the present invention belongs to the technical field of fermentation of metabolically engineered cells. The present invention describes a method for producing disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end by cells and purifying the disaccharides or oligosaccharides from culture. Furthermore, the present invention provides a metabolically engineered cell for producing disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end.
碳水化合物經常以蛋白質和脂質的醣-共軛形式存在,參與許多重要現象,例如與受精、胚胎發生、發炎、轉移(metastasis)和宿主病原體黏附的發展和進程相關的分化、發展和生物識別過程。碳水化合物也可於體液和母乳中以未共軛的聚醣存在,其中其亦調節重要的發展及免疫過程(Bode, Early Hum. Dev. 1-4 (2015);Reily et al., Nat. Rev. Nephrol. 15, 346-366 (2019);Varki, Glycobiology 27, 3-49 (2017))。Carbohydrates, often in sugar-conjugated forms of proteins and lipids, are involved in many important phenomena such as differentiation, development, and biorecognition processes associated with the development and progression of fertilization, embryogenesis, inflammation, metastasis, and host pathogen adhesion . Carbohydrates can also be present as unconjugated glycans in body fluids and breast milk, where they also regulate important developmental and immune processes (Bode, Early Hum. Dev. 1-4 (2015); Reily et al., Nat. Rev. Nephrol. 15, 346-366 (2019); Varki, Glycobiology 27, 3-49 (2017)).
雙醣Galβ1,3GlcNAc,亦稱為lacto-N-biose、LNB、第1型N-乙醯乳糖胺( N-acetyllactosaminetype 1)或第1型LacNAc,其由β-1,3連接至N-乙醯葡萄糖胺(GlcNAc)的半乳糖組成。GlcNAc存在於雙醣的還原端。LNB已知是幾種重要血型表位的前驅物,例如路易斯(Lewis)A、路易斯B或唾液酸化路易斯A。含有聚醣的第1型LacNAc亦在腫瘤轉移中具有重要的作用,因此被視為腫瘤標誌物(Fischöder et al., Molecules 22, 1320 (2017))。它們也是黏蛋白型醣蛋白的重要成分。廣布的雙醣Galβ1,4GlcNAc,亦稱為N-乙醯乳糖胺、LacNAc或第2型LacNAc,其由β-1,4連接至N-乙醯葡萄糖胺(GlcNAc)的半乳糖組成。同樣地,GlcNAc存在於雙醣的還原端。LacNAc經常在癌細胞表面過度表現,在癌細胞表面其與腫瘤分泌的半乳糖凝集素(galectins)結合,以促進癌症相關過程,如轉移、黏附、腫瘤存活及免疫逃脫(Romano and Oscarson, Org. Biomol. Chem. 17, 2265-2278 (2019))。LacNAc亦為路易斯X、路易斯Y和唾液酸化路易斯X表位的一部分。第1型(Galβ1,3GlcNAc)及第2型(Galβ1,4GlcNAc)兩者的二聚及延長的LacNAc結構和聚-N-乙醯乳糖胺(poly-LacNAc)通常與發炎進程及癌症相關。雙醣LNB和LacNAc及其部分和路易斯型表位亦存在於人乳中,作為人乳寡醣(HMO)組合物的一部分(Prudden et al., PNAS USA 114, 6954-6959 (2017))。存在於結腸中的部分的雙叉乳桿菌( Bifidobacterium)物種能夠特定消耗HMO,例如LNB或含有醣類的LNB。一些乳酸桿菌(lactobacilli)(例如乾酪乳桿菌( L. casei))已顯示可以在泌乳早期代謝人乳中存在的LacNAc雙醣(Bidart et al., Sci. Rep. 8, 7152(2018))。因此,乳酸桿菌和雙叉乳桿菌佔母乳餵養的嬰兒的總腸道菌相(total gut flora)達90%(Fischöder et al., Molecules 22, 1320 (2017))。 Disaccharide Galβ1,3GlcNAc, also known as lacto-N-biose, LNB, N-acetyllactosamine type 1, or type 1 LacNAc, which is linked by β-1,3 to N- Galactose composition of acetylglucosamine (GlcNAc). GlcNAc is present at the reducing end of the disaccharide. LNB is known to be a precursor of several important blood group epitopes, such as Lewis A, Lewis B or sialylated Lewis A. The glycan-containing type 1 LacNAc also plays an important role in tumor metastasis and is therefore regarded as a tumor marker (Fischöder et al., Molecules 22, 1320 (2017)). They are also important components of mucin-type glycoproteins. The widespread disaccharide Galβ1,4GlcNAc, also known as N-acetyllactosamine, LacNAc, or LacNAc type 2, consists of galactose β-1,4 linked to N-acetylglucosamine (GlcNAc). Likewise, GlcNAc is present at the reducing end of the disaccharide. LacNAc is frequently overexpressed on the surface of cancer cells, where it binds to tumor-secreted galectins to promote cancer-related processes such as metastasis, adhesion, tumor survival, and immune escape (Romano and Oscarson, Org. Biomol. Chem. 17, 2265-2278 (2019)). LacNAc is also part of the Lewis X, Lewis Y and sialylated Lewis X epitopes. Dimeric and extended LacNAc structures of both type 1 (Galβ1,3GlcNAc) and type 2 (Galβ1,4GlcNAc) and poly-N-acetyllactosamine (poly-LacNAc) are commonly associated with inflammatory processes and cancer. The disaccharides LNB and LacNAc and their parts and Lewis-type epitopes are also present in human milk as part of human milk oligosaccharide (HMO) compositions (Prudden et al., PNAS USA 114, 6954-6959 (2017)). Parts of the Bifidobacterium species present in the colon are capable of specific consumption of HMOs, such as LNB or LNB containing carbohydrates. Some lactobacilli, such as L. casei , have been shown to metabolize the LacNAc disaccharide present in human milk during early lactation (Bidart et al., Sci. Rep. 8, 7152 (2018)). Thus, Lactobacillus and Bifidobacterium constitute up to 90% of the total gut flora of breastfed infants (Fischöder et al., Molecules 22, 1320 (2017)).
由於這些在還原端具有GlcNAc的雙醣及寡醣參與大量(plethora)的重要進程,因此有許多製藥及營養品關注在開發新型N-乙醯乳糖胺類(第1型或第2型)的治療劑或有益的營養化合物。相當多的努力投入在發展聚醣(如雙醣LNB和LacNAc)或在還原端含有LNB或LacNAc的聚醣的合成製程上。Since these disaccharides and oligosaccharides with GlcNAc at the reducing end are involved in the important process of plethora, many pharmaceutical and nutraceuticals are focusing on the development of novel N-acetyllactosamines (type 1 or type 2) A therapeutic or beneficial nutritional compound. Considerable effort has been devoted to developing synthetic processes for glycans such as the disaccharides LNB and LacNAc or glycans containing LNB or LacNAc at the reducing end.
化學合成方法是費力和費時的,而且由於涉及大量的步驟,其很難進行擴大規模。生物催化方式提供許多優勢,因此有大量與產生LNB、LacNAc及其變體有關的公開。Bayón et al. (RSC Advances 3(30) (2013))報告使用來自環狀芽孢桿菌( Bacillus circulans)的經純化β-Gal-3半乳糖苷酶,以自補充有p-NP-Gal作為供給者且補充有GlcNAc作為接受者的生質中產生LNB。專利申請案JP2017195793A另一種半乳糖苷酶,由一種芽孢桿菌(Bacillus species)重組產生並從芽孢桿菌中純化,以用於經由水解體外合成例如LNB的半乳寡醣(galacto-oligosaccharide)。其他報告利用來自雙歧桿菌(Bifidobacteria)的LNB磷酸化酶,在從蔗糖和補充GlcNAc起始的酶反應混合物,另外補充有蔗糖磷酸化酶、UDP-葡萄糖-己糖-1-磷酸尿苷醯轉移酶(UDP-glucose-hexose-1-phosphate uridylyltransferase)和UDP-葡萄糖4-表異構酶(UDP-glucose 4-epimerase),以產生LNB(Nishimoto and Kitaoka, Biosci. Biotechnol. Biochem. 71, 2101-2104 (2007);Nishimoto, Biosci. Biotechnol. Biochem. 84, 17-24 (2020);US2010120096A; JP4264742 B2;JP2005341883 A2)。並且,提出一種使用含有半乳糖、GlcNAc、半乳糖激酶與LNB磷酸化酶一起的體外反應混合物(CN110527704 A)。經常報導的另一種作用方式是利用偶合偶接以進行催化轉化。在這樣的例子中,表現參與本發明的醣類催化途徑的酶的幾個重組細菌菌株被培育和裂解,以獲得分解反應混合物中必要的酶。專利申請案JP2013201913的發明人描述了在含有補充蔗糖、GlcNAc、磷酸鹽、UDP-葡萄糖及/或UDP-半乳糖的混合物中,將布氏雙叉乳桿菌( Bifidobacterium breve)MCC1320或嬰兒雙叉乳桿菌菌株( Bifidobacterium infantisstrain)和長雙叉乳桿菌菌株( B. longumstrain)一起偶合使用,而分別表現LNB磷酸化酶和蔗糖磷酸化酶,以製造LNB。Endo和共同工作者甚至報告三個細菌菌株的偶合使用,即用於過度表現來自淋病雙球菌( Neisseria gonorrhoeae)的galT、galK、galU、ppa和lgtB的兩個重組大腸桿菌菌株以及用於產生UTP的產胺棒狀桿菌( Corynebacterium ammoniagenes)菌株,以在補充半乳糖和GlcNAc的反應中製造LacNAc(Endo et al., Carb. Res. 316(1-4), 179-183 (1999))。同一小組描述了一個類似的偶合系統,其中一種大腸桿菌菌株表現來自幽門螺旋桿菌( H. pylori)的β1,4-galT,而不是NgLgtB,以參與酶的轉換,輔以額外的GlcNAc,以產生LacNAc(Endo et al., Glycobiology 10(8), 809-813(2000))。腦膜炎雙球菌( N. meningitidis)的NmLgtB酶(Wakarchuk et al., Protein Engineering, Design and Selection 11(4), 295-302 (1998))也經常被選殖與來自大腸桿菌或嗜熱鏈球菌( Streptococcus thermophilus)的galE一起作為融合蛋白的一部分,以用於在額外的GlcNAc反應中合成LacNAc類寡醣(Blixt et al., J. Org. Chem. 66(7), 2442-2448 (2001); Ruffing et al., Metab. Eng. 8(5), 465-473 (2006);Mao et al., Biotechnol. Prog. 22(2), 369-374 (2006))。在路易士X表位的合成方法中也描述了細菌偶合,也被稱為3'-岩藻糖基化(3’-fucosylated)的LacNAc(Koizumi et al., J. Ind. Microbiol. Biotech. 25, 213-217 (2000))。 Chemical synthesis methods are laborious and time-consuming, and they are difficult to scale up due to the large number of steps involved. Biocatalytic approaches offer many advantages, and thus there are numerous publications related to the production of LNB, LacNAc, and variants thereof. Bayón et al. (RSC Advances 3(30) (2013)) report the use of purified β-Gal-3 galactosidase from Bacillus circulans , self-supplemented with p-NP-Gal as supply LNB was produced in the biomass of the recipient and supplemented with GlcNAc as recipient. Patent application JP2017195793A Another galactosidase enzyme, recombinantly produced from and purified from a Bacillus species, for in vitro synthesis of galacto-oligosaccharides such as LNB via hydrolysis. Other reports utilize LNB phosphorylase from Bifidobacteria in an enzymatic reaction mixture starting from sucrose and supplemented with GlcNAc, additionally supplemented with sucrose phosphorylase, UDP-glucose-hexose-1-phosphate uridine UDP-glucose-hexose-1-phosphate uridylyltransferase and UDP-glucose 4-epimerase to produce LNB (Nishimoto and Kitaoka, Biosci. Biotechnol. Biochem. 71, 2101 -2104 (2007); Nishimoto, Biosci. Biotechnol. Biochem. 84, 17-24 (2020); US2010120096A; JP4264742 B2; JP2005341883 A2). Also, it is proposed to use an in vitro reaction mixture containing galactose, GlcNAc, galactokinase together with LNB phosphorylase (CN110527704 A). Another frequently reported mode of action is the use of coupled coupling for catalytic conversion. In such an example, several recombinant bacterial strains expressing enzymes involved in the carbohydrate catalytic pathway of the present invention were grown and lysed to obtain the necessary enzymes in the decomposition reaction mixture. The inventors of patent application JP2013201913 describe the treatment of Bifidobacterium breve MCC1320 or Bifidobacterium infantis in a mixture containing supplemental sucrose, GlcNAc, phosphate, UDP-glucose and/or UDP-galactose Bifidobacterium infantis strains and B. longum strains were coupled together to express LNB phosphorylase and sucrose phosphorylase, respectively, to make LNB. Endo and co-workers even report the coupled use of three bacterial strains, namely two recombinant E. coli strains for overexpressing galT, galK, galU, ppa and lgtB from Neisseria gonorrhoeae and for UTP production A strain of Corynebacterium ammoniagenes to produce LacNAc in a reaction supplemented with galactose and GlcNAc (Endo et al., Carb. Res. 316(1-4), 179-183 (1999)). The same group described a similar coupling system in which an E. coli strain expressed β1,4-galT from H. pylori , rather than NgLgtB, to participate in the enzymatic switch, supplemented with additional GlcNAc, to generate LacNAc (Endo et al., Glycobiology 10(8), 809-813 (2000)). The NmLgtB enzyme of N. meningitidis (Wakarchuk et al., Protein Engineering, Design and Selection 11(4), 295-302 (1998)) is also frequently selected for use with E. coli or Streptococcus thermophilus. ( Streptococcus thermophilus ) together as part of a fusion protein for the synthesis of LacNAc-like oligosaccharides in an additional GlcNAc reaction (Blixt et al., J. Org. Chem. 66(7), 2442-2448 (2001) ; Ruffing et al., Metab. Eng. 8(5), 465-473 (2006); Mao et al., Biotechnol. Prog. 22(2), 369-374 (2006)). Bacterial coupling, also known as 3'-fucosylated LacNAc, has also been described in the synthesis of Lewis X epitopes (Koizumi et al., J. Ind. Microbiol. Biotech. 25, 213-217 (2000)).
上述方法通常存在以下問題:醣基轉移酶及/或醣基水解酶的可用性及/或穩定性相對較差,對最佳化學計算平衡的要求、需要原位再生核苷酸-糖、添加多種反應化合物,例如包括GlcNAc或在其還原端含有GlcNAc的寡醣的接受者,以及需要培育不同的產生生物體,這些生物體分別產生一或多種催化轉換中所必需的酶或融合酶。這些列舉中最重要的障礙是包括GlcNAc或在其還原端含有GlcNAc的寡醣的主接受者的細胞合成。在提到的例子中,用於合成LNB、LacNAc或在其還原端具有GlcNAc的寡醣的GlcNAc單醣被外部補充到相關的反應或細胞中。The above methods generally suffer from the following problems: relatively poor availability and/or stability of glycosyltransferases and/or glycosyl hydrolases, requirement for optimal stoichiometric balance, need for in situ regeneration of nucleotide-sugars, addition of multiple reactions Compounds, such as recipients including GlcNAc or oligosaccharides containing GlcNAc at their reducing end, and require the cultivation of different producing organisms, which respectively produce one or more enzymes or fusion enzymes necessary for catalytic conversion. The most important obstacle in these lists is the cellular synthesis of the primary acceptor including GlcNAc or oligosaccharides containing GlcNAc at its reducing end. In the examples mentioned, GlcNAc monosaccharides used to synthesize LNB, LacNAc or oligosaccharides with GlcNAc at their reducing end are externally supplemented to the relevant reaction or cell.
Bettler和共同工作者描述了六醣βGal(1,4)[βGlcNAc(1,4)] 4GlcNAc的產生,其在沒有補充GlcNAc的情況下以單一細胞所構建(Bettler et al., Glycoconj. J. 16, 205-212 (1999))。此種六醣在其還原端具有GlcNAc單元,在其非還原端具有終端LacNAc部分。為此,在一個重組的大腸桿菌細胞中,來自細菌性固氮根瘤菌屬( Azorhizobium)的NodC酶(β1,4-GlcNAc-寡醣合成酶)與來自腦膜炎雙球菌的LgtB 酶(β(1,4)-半乳糖基轉移酶(β(1,4)-galactosyltransferase))共同表現。然而在這個例子中,存在於這種六醣中,並且在其還原端具有GlcNAc的甲殼素結構(GlcNAc-GlcNAc) n是藉由UDP-GlcNAc部分的連接而產生。Bettler和共同工作者亦描述在類似的系統中,以重組大腸桿菌細胞共同表現NodC、LgtB和牛a1,3-半乳糖基轉移酶GstA而產生在其還原端含有GlcNAc的異種移植抗原Galα1,3Galβ1,4[βGlcNAc(1,4)] 4GlcNAc(Bettler et al., Biochem. Biophys. Res. Commun. 302(3), 620-624 (2003))。同樣,甲殼素結構和存在於七醣中的LacNAc部分是由UDP-GlcNAc部分替代非活化的GlcNAc的使用而構建。Deng和共同工作者描報告了使用重組大腸桿菌細胞經由發酵成功產生GlcNAc的情況(Deng et al., Metab. Eng. 7, 201-214 (2005); EP1576106)。在Deng和共同工作者開發的微生物系統中,GlcNAc是在大腸桿菌細胞的細胞外,更具體而言,是在大腸桿菌的周質(periplasm)中,經由在輸出GlcNAc-6-磷酸鹽的過程中對後者去磷酸化時產生。因此,獲得的GlcNAc部分不能再用於細胞內的轉化,如進一步的醣化,而其為製造本發明的醣類所需。另外,Deng和共同工作者所描述的過程需要兩階段餵養批次系統,其需要精確的控制以使磷酸化胺基糖對產生宿主的抑制作用最小化,其使得該過程對產生高力價的(細胞外)GlcNAc不具商業價值。 Bettler and co-workers describe the production of the hexasaccharide βGal(1,4)[βGlcNAc(1,4)]4GlcNAc constructed in a single cell without supplementation with GlcNAc ( Bettler et al., Glycoconj. J . 16, 205-212 (1999)). This hexasaccharide has a GlcNAc unit at its reducing end and a terminal LacNAc moiety at its non-reducing end. To this end, in a recombinant E. coli cell, the NodC enzyme ( β1,4 -GlcNAc-oligosaccharide synthase) from bacterial Azorhizobium was combined with the LgtB enzyme (β(1) from Neisseria meningitidis. ,4)-galactosyltransferase (β(1,4)-galactosyltransferase)) co-expressed. In this example, however, the chitin structure (GlcNAc-GlcNAc) n which is present in this hexasaccharide and has GlcNAc at its reducing end is created by the linkage of the UDP-GlcNAc moiety. Bettler and co-workers also described in a similar system the co-expression of NodC, LgtB and the bovine a1,3-galactosyltransferase GstA in recombinant E. coli cells to generate the xenograft antigen Galα1,3Galβ1 containing GlcNAc at its reducing end, 4 [βGlcNAc(1,4)]4GlcNAc (Bettler et al., Biochem. Biophys. Res. Commun. 302(3), 620-624 (2003)). Likewise, the chitin structure and the LacNAc moiety present in the heptasaccharide were constructed from the use of the UDP-GlcNAc moiety instead of the inactivated GlcNAc. Deng and co-workers describe the successful production of GlcNAc via fermentation using recombinant E. coli cells (Deng et al., Metab. Eng. 7, 201-214 (2005); EP1576106). In the microbial system developed by Deng and co-workers, GlcNAc is extracellular in E. coli cells, more specifically, in the periplasm of E. coli, via a process that exports GlcNAc-6-phosphate produced when the latter is dephosphorylated. Thus, the obtained GlcNAc fraction can no longer be used for intracellular transformations, such as further saccharification, which is required for the manufacture of the saccharides of the present invention. Additionally, the process described by Deng and co-workers requires a two-stage feeding batch system that requires precise control to minimize host inhibition by phosphorylated amino sugars, which makes the process critical to the production of high-potency (Extracellular) GlcNAc has no commercial value.
本發明克服上述問題,由於其提供一種在相對容易情況下產生所欲產品之方法及細胞,且若需要,可進行連續產生。The present invention overcomes the above problems as it provides a method and cell for producing the desired product with relative ease and, if desired, continuous production.
令人驚訝的是,現已發現可由單一細胞產生GlcNAc,並由同一細胞進一步將此GlcNAc單醣醣化,以製造在其還原端具有GlcNAc的雙醣或寡醣。本發明提供了一種由細胞產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之方法。該方法包括以下步驟:提供能夠合成核苷酸-糖的細胞,以合成GlcNAc,以使該GlcNAc單醣醣化。本發明亦關於一種藉由在允許產生該雙醣或寡醣的條件下培養該細胞,以產生還原端具有GlcNAc的雙醣或寡醣之方法。並且,本發明還提供了從培養物中分離該雙醣或寡醣之方法。此外,本發明提供一種經過代謝工程的細胞,其用於產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。Surprisingly, it has now been found that GlcNAc can be produced by a single cell, and this GlcNAc monosaccharide can be further glycated by the same cell to produce a disaccharide or oligosaccharide with GlcNAc at its reducing end. The present invention provides a method for producing a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end by a cell. The method includes the steps of: providing cells capable of synthesizing nucleotide-sugars to synthesize GlcNAc to glycosylate the GlcNAc monosaccharide. The present invention also relates to a method for producing a disaccharide or oligosaccharide having GlcNAc at the reducing end by culturing the cell under conditions that allow production of the disaccharide or oligosaccharide. Furthermore, the present invention also provides a method for isolating the disaccharide or oligosaccharide from the culture. Furthermore, the present invention provides a metabolically engineered cell for producing disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end.
定義definition
本說明書中用來描述本發明及其各項實施例之字詞不僅應被理解為其等通常定義含義之意義,而且在本說明書中藉由特殊定義包含超出通常定義含義之範疇之結構、材料及動作。因此,若一元件在本說明書之內文中可被理解為包含一個以上含義,則其在一發明申請專利範圍中之使用必須被理解為對於由說明書及其字詞本身支援之所有可能含義的通用。The words used to describe the present invention and its various embodiments in this specification should not only be construed as the meanings of the commonly defined meanings, but also include structures and materials beyond the scope of the commonly defined meanings by special definitions in this specification and action. Thus, if an element can be understood within the context of this specification to contain more than one meaning, its use in the context of an invention claim must be understood as being generic to all possible meanings supported by the specification and the words themselves .
此處揭露的本發明的各種實施例和實施例的各態樣不僅應按照本說明書中具體描述的順序和上下文來理解,而且應包括任何順序和其任何組合。只要上下文需要,所有用於單數的字詞應被視為包括複數,反之亦然。除非另有定義,本文中所用的所有技術和科學用語通常具有如所屬技術領域中具通常知識者所通常理解的涵義相同。一般而言,本文使用的用語和細胞培養、分子遺傳學、有機化學及核酸化學及雜交的實驗室程序是所屬技術領域已知且普遍採用。標準技術用於核酸和胜肽的合成。一般而言,純化步驟是根據製造商的說明書進行。The various embodiments and aspects of the embodiments disclosed herein are to be construed not only in the order and context specifically described in this specification, but also in any order and in any combination thereof. Wherever the context requires, all words used in the singular shall be deemed to include the plural and vice versa. Unless otherwise defined, all technical and scientific terms used herein generally have the same meaning as commonly understood by one of ordinary skill in the art. In general, the terminology and laboratory procedures of cell culture, molecular genetics, organic chemistry and nucleic acid chemistry and hybridization used herein are those known and commonly employed in the art. Standard techniques are used for the synthesis of nucleic acids and peptides. Generally, purification steps are performed according to the manufacturer's instructions.
在說明書中,已揭露本發明的實施例,而儘管使用特定的用語,這些用語只於描述性的意義使用,而不意圖為限制,本發明的範圍由以下的發明申請專利範圍所闡述。應理解的是,圖示的實施例只為了舉例說明的目的,不應該被視為對本發明的限制。對於所屬技術領域中具通常知識者而言顯而易見的是,可與本文內發明的文字和精神一致並在本發明的範圍內進行修飾、其他實施例、改善、細節及用途,其僅受發明申請專利範圍的限制,並根據專利法,包括等效物原則進行解釋。在以下的發明申請專利範圍中,所提供用於指定發明申請專利範圍步驟的參考特徵只為了方便描述,而不表示執行步驟的任何特定順序。In the specification, embodiments of the present invention have been disclosed, and although specific terms are used, these terms are used in a descriptive sense only and are not intended to be limiting, and the scope of the present invention is set forth in the following claims. It should be understood that the illustrated embodiments are for illustrative purposes only and should not be construed as limiting the invention. Modifications, other embodiments, improvements, details and uses consistent with the letter and spirit of the invention herein and within the scope of the invention will be apparent to those of ordinary skill in the art, which are only limited by the invention The limitations of patent scope are interpreted in accordance with patent law, including the doctrine of equivalents. In the following claims for invention, the reference features used to designate the steps of the claim for invention are provided for convenience of description only and do not imply any particular order in which the steps are performed.
在本文及其發明申請專利範圍中,動詞「包括(to comprise)」及其詞形變化在其非限制性意義上使用,意味著該字詞後面的項目被包括在內,但未具體提及的項目不被排除。在本申請中,動詞「包括」可以用「構成(to consist)」或「實質上構成(to consist essentially of)」來代替,反之亦然。此外,動詞「構成(to consist)」可以由「實質上構成(to consist essentially of)」代替,其表示本文定義的組合物可包括比具體確定的成分更多的成分,該額外成分不會改變本發明的獨特特徵。此外,以不定冠詞「一(a)」或「一(an)」提到一個元件並不排除存在一個以上的元件的可能性,除非上下文明確要求存在一個且只有一個元件。因此,不定冠詞「一(a)」或「一(an)」通常表示「至少一個(at least one)」。In this article and the scope of its patent application, the verb "to comprise" and its conjugations are used in their non-limiting sense to mean that the item following the word is included, but not specifically mentioned items are not excluded. In this application, the verb "comprise" may be replaced by "to consist" or "to consist essentially of" and vice versa. Furthermore, the verb "to consist" may be replaced by "to consist essentially of", which means that a composition as defined herein may include more ingredients than those specifically identified, the additional ingredients not changing Unique features of the present invention. Furthermore, reference to an element with the indefinite articles "a (a)" or "an (an)" does not preclude the presence of more than one element unless the context clearly requires the presence of one and only one element. Therefore, the indefinite article "a" or "an" usually means "at least one".
在本申請中,除非另有明確說明,冠詞「一(a)」及「一(an)」較佳由「至少二個(at least two)」取代,更佳由「至少三個(at least three)」取代,再更佳由「至少四個(at least four)」取代,再更佳由「至少五個(at least five)」取代,再更佳由「至少六個(at least six)」取代,最佳由「至少二個(at least two)」取代。In this application, unless expressly stated otherwise, the articles "a" and "an" are preferably replaced by "at least two", more preferably "at least three" three)", more preferably "at least four", still more preferably "at least five", still more preferably "at least six" ", preferably with "at least two".
在本申請中,除非另有明確說明,否則「合成(synthesize)」、「合成(synthesized)」和「合成(synthesis)」的特徵分別可與「產生(produce)」、「產生(produced)」和「產生(production)」的特徵互換使用。In this application, unless expressly stated otherwise, the features of "synthesize", "synthesized" and "synthesis" may be combined with "produce", "produced", respectively Used interchangeably with the "production" feature.
除非另有說明,否則本文所確定的各實施例都可組合在一起。此說明書中提到的所有公開、專利、及專利申請案在此藉由參照而併入,其程度與每個單獨的公開、專利、或專利申請案被具體和單獨指定為藉由參照而併入相同。優先權申請案的全部內容,包括EP20190198、EP20190200和EP20190206亦藉由參照而併入,其程度與該優先權申請案被具體和單獨指示以引用方式併入一樣。Unless otherwise stated, the various embodiments identified herein can be combined together. All publications, patents, and patent applications mentioned in this specification are hereby incorporated by reference to the extent that each individual publication, patent, or patent application is specifically and individually designated to be incorporated by reference Enter the same. The entire contents of the priority application, including EP20190198, EP20190200 and EP20190206, are also incorporated by reference to the same extent as if the priority application was specifically and individually indicated to be incorporated by reference.
根據本發明,用語「多核苷酸(polynucleotide(s))」通常是指任何多核肽酸(polyribonucleotide)或聚去氧核糖核苷酸(polydeoxyribonucleotide),其可以是未修飾的RNA或DNA或修飾的RNA或DNA。「多核苷酸」包括但不限於單鏈和雙鏈DNA、單鏈和雙鏈區域或單鏈、雙鏈和三鏈區域的混合的DNA、以及單鏈和雙鏈RNA及單雙鏈區域混合的RNA、包括可為單鏈或更典型的雙鏈或三鏈區、或單鏈及雙鏈區域的混合之DNA和RNA的混合分子(hybrid molecules)。此外,本文所用的「多核苷酸」是指包括RNA或DNA或RNA及DNA兩者的三鏈區域。這些區域的鏈可以來自同一個分子,也可以來自不同的分子。這些區域可以包括一個或多個分子的全部,但更典型的是只關於一些分子的區域。三螺旋區域的分子之一經常是寡核苷酸。如本文所用的用語「多核苷酸」也包括上述含有一個或多個修飾鹼基的DNA或RNA。因此,根據本發明,為了穩定性或其他原因而修飾了骨架的DNA或RNA是「多核苷酸」。此外,包含特殊鹼基(unusual bases)(如肌苷)或經修飾的鹼基(如三苯甲基化鹼基(tritylated bases))的DNA或RNA應理解為涵蓋在用語「多核苷酸」中。可以理解的是,已經對DNA和RNA進行了各種各樣的修飾,這些修飾可用於所屬技術領域中具通常知識者已知的許多有用目的。本文使用的用語「多核苷酸」包括多核苷酸的此種化學、酶或代謝修飾形式,以及病毒和細胞(包括例如,簡單及複雜細胞)所特有的DNA和RNA的化學形式。用語「多核苷酸」亦包括經常被稱為寡核苷酸的短多核苷酸。According to the present invention, the term "polynucleotide(s)" generally refers to any polyribonucleotide or polydeoxyribonucleotide, which may be unmodified RNA or DNA or modified RNA or DNA. "Polynucleotide" includes, but is not limited to, single- and double-stranded DNA, DNA with single- and double-stranded regions or a mixture of single-, double-, and triple-stranded regions, and single- and double-stranded RNA and mixed single- and double-stranded regions RNA, including hybrid molecules of DNA and RNA, which may be single-stranded or more typically double- or triple-stranded regions, or a mixture of single- and double-stranded regions. Furthermore, "polynucleotide" as used herein refers to a triple-stranded region comprising RNA or DNA or both RNA and DNA. The chains of these regions can be from the same molecule or from different molecules. These regions may encompass the entirety of one or more molecules, but are more typically regions for only some molecules. One of the molecules of the triple helix region is often an oligonucleotide. The term "polynucleotide" as used herein also includes the aforementioned DNA or RNA containing one or more modified bases. Thus, according to the present invention, DNA or RNA whose backbone has been modified for stability or other reasons is a "polynucleotide". In addition, DNA or RNA containing unusual bases (eg, inosine) or modified bases (eg, tritylated bases) should be understood to be covered by the term "polynucleotide" middle. It will be appreciated that a wide variety of modifications have been made to DNA and RNA for many useful purposes known to those of ordinary skill in the art. The term "polynucleotide" as used herein includes such chemically, enzymatically or metabolically modified forms of polynucleotides, as well as chemical forms of DNA and RNA that are characteristic of viruses and cells, including, for example, simple and complex cells. The term "polynucleotide" also includes short polynucleotides often referred to as oligonucleotides.
「多肽(Polypeptide(s))」是指包含藉由肽鍵或修飾的肽鍵彼此連接的兩個或更多個胺基酸的任何肽或蛋白質。「多肽」既指短鏈(通常稱為肽、寡肽和寡聚物),也指長鏈(通常稱為蛋白質)。多肽可含有20種基因編碼胺基酸以外的胺基酸。「多肽」包括通過藉由過程(例如加工和其他轉譯後修飾)修飾的多肽,也包括藉由化學修飾技術修飾的多肽。這樣的修飾已在基礎教科書和更詳細的專著中以及多卷研究文獻中充分描述,並且其對於所屬技術領域中具通常知識者是已知的。相同類型的修飾可以相同的程度或不同的程度存在於給定多肽中的數個位點上。此外,給定的多肽可包含許多類型的修飾。修飾可以在多肽的任意位置發生,包括肽主鏈、胺基酸側鏈和胺基末端或羧基末端。修飾包括,例如,乙醯化、醯化、ADP-核糖基化、醯胺化、黃素(flavin)的共價連接、血紅素部分的共價連接、核苷酸或核苷酸衍生物的共價連接、脂質或脂質衍生物的共價連接、磷脂醯肌醇的共價連接、交聯、環化、二硫鍵形成、去甲基化作用、共價交聯的形成、焦穀胺酸的形成、甲醯化作用、γ-羧基化、醣化、GPI錨定形成、羥基化、碘化、甲基化、肉豆蔻醯化(myristoylation)作用、氧化、蛋白水解加工、磷酸化、異戊二烯化(prenylation)、外消旋化、脂質連接、硫化、麩胺酸殘基的γ-羧化、羥基化和ADP-核糖基化、硒化(selenoylation)、轉移RNA介導的向蛋白添加胺基酸(例如精胺酸化)和泛蛋白化(ubiquitination)。多肽可以是分支的或有或無分支的環狀。環狀、分支的和分支環狀的多肽可以由後轉譯天然過程形成,並且也可以藉由完全合成法製得。"Polypeptide(s)" refers to any peptide or protein comprising two or more amino acids linked to each other by peptide bonds or modified peptide bonds. "Polypeptide" refers to both short chains (often called peptides, oligopeptides, and oligomers) and long chains (often called proteins). Polypeptides may contain amino acids other than the 20 gene-encoded amino acids. "Polypeptide" includes polypeptides modified by processes such as processing and other post-translational modifications, as well as polypeptides modified by chemical modification techniques. Such modifications are well described in basic textbooks and more detailed monographs, as well as in the multi-volume research literature, and are known to those of ordinary skill in the art. The same type of modification may be present at several sites in a given polypeptide to the same degree or to different degrees. Furthermore, a given polypeptide may contain many types of modifications. Modifications can occur anywhere in the polypeptide, including the peptide backbone, amino acid side chains, and amino or carboxyl termini. Modifications include, for example, acetylation, acetylation, ADP-ribosylation, amidation, covalent attachment of flavin, covalent attachment of heme moieties, nucleotide or nucleotide derivative Covalent attachment, covalent attachment of lipids or lipid derivatives, covalent attachment of phosphatidylinositol, cross-linking, cyclization, disulfide bond formation, demethylation, formation of covalent cross-links, pyroglutamine Acid formation, formylation, gamma-carboxylation, glycation, GPI anchor formation, hydroxylation, iodination, methylation, myristoylation, oxidation, proteolytic processing, phosphorylation, isotope Prenylation, racemization, lipid linkage, sulfation, gamma-carboxylation, hydroxylation and ADP-ribosylation of glutamic acid residues, selenoylation, transfer RNA-mediated targeting Protein addition of amino acids (eg arginylation) and ubiquitination. Polypeptides can be branched or cyclic with or without branching. Cyclic, branched and branched cyclic polypeptides can be formed by post-translational natural processes, and can also be made by fully synthetic methods.
本文所用的用語「編碼多肽的多核苷酸」涵蓋包含編碼本發明多肽的序列的多核苷酸。該用語亦涵蓋包括編碼多肽的單一連續區域或不連續區域(例如,被整合的噬菌體或插入序列或編輯所間隔)以及也可含有編碼及/或非編碼序列的附加區域之多核苷酸。The term "polynucleotide encoding a polypeptide" as used herein encompasses polynucleotides comprising sequences encoding the polypeptides of the present invention. The term also encompasses polynucleotides that include a single contiguous or discontinuous region encoding a polypeptide (eg, separated by an integrated phage or insert or edit) and may also contain additional regions of coding and/or non-coding sequences.
「分離(Isolated)」表示「經人之手」改變了其自然狀態,亦即,若其在自然界中出現,則已經被改變或從其原來的環境中移走,或兩者都是。例如,自然存在於生物體內的多核苷酸或多肽不是「分離的」,但從其自然狀態的共存材料中分離出來的同一多核苷酸或多肽是「分離的」,正如本文所使用的用語。同樣地,如本文所用的「合成(synthetic)」序列表示以合成方式產生的任何序列,而不是直接從天然來源中分離出來。如本文所用「經合成的(Synthesized)」一詞表示任何合成產生的序列,而不是直接從自然來源中分離出來。"Isolated" means "by the hand of man" that has changed its natural state, that is, if it occurs in nature, it has been changed or removed from its original environment, or both. For example, a polynucleotide or polypeptide that is naturally present in an organism is not "isolated," but the same polynucleotide or polypeptide is "isolated," as the term is used herein, that is isolated from coexisting material in its natural state. Likewise, a "synthetic" sequence as used herein refers to any sequence produced synthetically, rather than directly isolated from a natural source. The term "Synthesized" as used herein refers to any synthetically produced sequence, rather than directly isolated from a natural source.
用語「重組(recombinant)」或「基因轉殖(transgenic)」或「代謝工程(metabolically engineered)」或「基因改造(genetically modified)」,在本文提及細胞或宿主細胞時可互換使用,並表示細菌細胞複製異源核酸,或表現由異源核酸編碼的胜肽或蛋白質(即,「對該細胞而言是外來的」序列或「對該細胞中的該位置或環境而言是外來的」序列)。這種細胞被描述為用至少一個異源或外源基因進行轉形,或被描述為藉由引入至少一個異源或外源基因進行轉形。代謝工程或重組或基因轉殖細胞可包含在細胞的原始(非重組)形式中沒有的基因。重組細胞也可包含在原生形式的細胞中發現的基因,其中基因被修飾並藉由人工手段重新引入細胞中。這些用語亦涵蓋含有細胞內源性核酸的細胞,該核酸已被修飾、或其表現或活性已被修飾,而沒有從細胞中移除核酸;這種修飾包括藉由基因取代、取代啟動子、特定位突變;以及相關技術獲得的修飾。因此,「重組多肽(recombinant polypeptide)」是一種由重組細胞產生的多肽。本文所用的「異源序列(heterologous sequence)」或「異源核酸(heterologous nucleic acid)」是指來自特定細胞以外的起源(例如來自不同的物種),或者若為同一來源,則從其原始形式或在基因組中的位置被修飾。因此,與啟動子可操作連接的異源核酸的來源與衍生的啟動子的來源不同,或者若為同一來源,則從其原始形式或在基因組中的位置進行了修飾。異源序列可藉由例如轉染、轉形、共軛或轉導等方式穩定地引入到宿主微生物細胞的基因組中,其中可應用的技術將取決於細胞和待引入的序列。各種技術是所屬技術領域中具通常知識者已知,且例如,描述在Sambrook等人的Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.(1989)。在本發明內容中內使用的用語「突變(mutant)」細胞或微生物是指經過基因改造的細胞或微生物。The terms "recombinant" or "transgenic" or "metabolically engineered" or "genetically modified" are used interchangeably herein with reference to a cell or host cell and mean Bacterial cells replicate a heterologous nucleic acid, or express a peptide or protein encoded by a heterologous nucleic acid (i.e., sequences that are "foreign to the cell" or "foreign to this location or environment in the cell" sequence). Such cells are described as transformed with at least one heterologous or exogenous gene, or described as transformed by the introduction of at least one heterologous or exogenous gene. Metabolically engineered or recombinant or transgenic cells may contain genes that were not present in the original (non-recombinant) form of the cell. Recombinant cells may also contain genes found in native forms of cells, wherein the genes have been modified and reintroduced into the cells by artificial means. These terms also encompass cells that contain nucleic acid endogenous to the cell, which has been modified, or whose expression or activity has been modified without removing the nucleic acid from the cell; such modifications include substitution of genes, substitution of promoters, Site-specific mutations; and related art-obtained modifications. Thus, a "recombinant polypeptide" is a polypeptide produced by a recombinant cell. As used herein, a "heterologous sequence" or "heterologous nucleic acid" refers to an origin other than a particular cell (eg, from a different species), or if the same origin, from its original form or its position in the genome is modified. Thus, the source of the heterologous nucleic acid operably linked to the promoter is different from the source of the derived promoter, or if the same source, modified from its original form or position in the genome. Heterologous sequences can be stably introduced into the genome of a host microbial cell by, for example, transfection, transformation, conjugation, or transduction, where applicable techniques will depend on the cell and the sequence to be introduced. Various techniques are known to those of ordinary skill in the art, and are described, for example, in Sambrook et al., Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. (1989). The term "mutant" cell or microorganism as used within the context of the present invention refers to a genetically modified cell or microorganism.
在本發明內容中內使用的用語「用於產生在還原端具有N-乙醯葡萄糖胺(GlcNAc)單元的雙醣或寡醣之細胞基因改造」是指在一或多種選自包括以下群組的酶的表現或活性方面進行基因改造的微生物細胞:N-乙醯葡萄糖胺-6-磷酸轉移酶(glucosamine 6-phosphate N-acetyltransferase)、磷酸酶(磷酸酶)、醣基轉移酶、L-麩醯胺酸-D-果糖-6-磷酸轉胺酶(L-glutamine—D-fructose-6-phosphate aminotransferase)及UDP-葡萄糖4-表異構酶。The term "cellular genetic modification for the production of disaccharides or oligosaccharides having N-acetylglucosamine (GlcNAc) units at the reducing end" used within the context of the present invention means that one or more selected from the group consisting of Microbial cells genetically modified in terms of the expression or activity of enzymes: N-acetylglucosamine-6-phosphate transferase (glucosamine 6-phosphate N-acetyltransferase), phosphatase (phosphatase), glycosyltransferase, L- Glutamate-D-fructose-6-phosphate aminotransferase (L-glutamine-D-fructose-6-phosphate aminotransferase) and UDP-glucose 4-epimerase.
在本發明內容的上下文中,用語「內源性(endogenous)」是指任何多核苷酸、多肽或蛋白質序列,其是細胞的天然部分並且存在於其在細胞染色體中的天然位置,與作用於其表現的自然控制機制相比,其表現控制沒有被改變。用語「外源性(exogenous)」是指任何多核苷酸、多肽或蛋白質序列,其來源於所研究的細胞外部,並且不是細胞的天然部分,或不存在於細胞染色體或質體中的其天然位置。In the context of the present context, the term "endogenous" refers to any polynucleotide, polypeptide or protein sequence that is a natural part of the cell and is present in its natural location in the cell's chromosome, and that acts on The control of its performance was not altered compared to the natural control mechanism of its performance. The term "exogenous" refers to any polynucleotide, polypeptide, or protein sequence that is derived from outside the cell under study and is not a native part of the cell, or is not naturally present in the cell's chromosomes or plastids. Location.
用語「異源(heterologous)」當用於提及多核苷酸、基因、核酸、多肽或酶時,是指來自或衍生自宿主物種以外的來源的多核苷酸、基因、核酸、多肽或酶。相反,本文使用的「同源(homologous)」多核苷酸、基因、核酸、多肽或酶來表示衍生自宿主生物體物種的多核苷酸、基因、核酸、多肽或酶。當提及用於維持或操縱基因序列的基因調控序列或輔助核酸序列(例如,啟動子、5'非轉譯區域、3'非轉譯區域、poly A附加序列、內含子序列、剪接位點、核糖體結合位點、內部核糖體進入序列、基因組同源區域、重組位點等)時,「異源」是指調控序列或輔助序列與在構建體、基因組、染色體或附加體中與調控或輔助核酸序列並列(juxtaposed)的基因不天然相關聯。因此,在本文中所謂的「異源啟動子」是指可操作地連接至在其天然狀態下(即,在非基因工程生物體的基因組中)不是可操作地連接的基因的啟動子,即使該啟動子可衍生自與其所連接的基因相同的物種(或在一些情況下,同一個生物體)。The term "heterologous" when used in reference to a polynucleotide, gene, nucleic acid, polypeptide or enzyme refers to a polynucleotide, gene, nucleic acid, polypeptide or enzyme derived from or derived from a source other than the host species. In contrast, "homologous" polynucleotides, genes, nucleic acids, polypeptides or enzymes as used herein refers to polynucleotides, genes, nucleic acids, polypeptides or enzymes derived from a species of host organism. When referring to gene regulatory sequences or auxiliary nucleic acid sequences for maintaining or manipulating gene sequences (e.g., promoters, 5' untranslated regions, 3' untranslated regions, poly A appendages, intron sequences, splice sites, ribosome binding sites, internal ribosomal entry sequences, regions of homology in the genome, recombination sites, etc.), "heterologous" means a regulatory sequence or ancillary sequence that is associated with a regulatory or auxiliary sequence in a construct, genome, chromosome or episome. Genes whose helper nucleic acid sequences are juxtaposed are not naturally associated. Thus, as used herein, a "heterologous promoter" refers to a promoter operably linked to a gene that is not operably linked in its native state (ie, in the genome of a non-engineered organism), even if The promoter can be derived from the same species (or in some cases, the same organism) as the gene to which it is linked.
用語蛋白質或酶的「修飾活性(modified activity)」是關於與該蛋白質或酶的野生型(即,天然)的活性相比,該蛋白質或酶的活性發生變化。與蛋白質或酶的野生型活性相比,該修飾活性可以是該蛋白質或酶的破壞(abolished)、受損、減少或延遲的活性,但也可以是與蛋白質或酶的野生型活性相比,該蛋白質或酶的加速或增強的活性。蛋白質或酶的修飾活性是藉由修飾該蛋白質或酶的表現而獲得或藉由表現經修飾,即突變形式的蛋白質或酶而獲得。酶的修飾活性進一步關於在酶的顯著的米氏(Michaelis)常數Km及/或顯著的最大速度(Vmax)的改變。The term "modified activity" of a protein or enzyme refers to a change in the activity of the protein or enzyme compared to the wild-type (ie, native) activity of the protein or enzyme. The modified activity may be an abolished, impaired, reduced or delayed activity of the protein or enzyme compared to the wild-type activity of the protein or enzyme, but may also be compared to the wild-type activity of the protein or enzyme, An accelerated or enhanced activity of the protein or enzyme. The modification activity of a protein or enzyme is obtained by modifying the expression of the protein or enzyme or by expressing a modified, ie mutated, form of the protein or enzyme. The modification activity of the enzyme is further related to the change in the significant Michaelis constant Km and/or the significant maximum velocity (Vmax) of the enzyme.
用語基因的「修飾表現(modified expression)」是關於在編碼蛋白質的產生過程的任何階段與該基因的野生型相比的表現變化。與野生型相比,該修飾表現是較低或較高的表現,其中用語「較高的表現(higher expression)」是指在內源基因的情況下也被定義為該基因的「過度表現(過度表現)」,或在野生型菌株中不存在的異源基因的情況下「表現」。較低的表現或減少的表現是藉由對所屬技術領域中具通常知識者而言通常已知的技術(如使用siRNA、CrispR、CrispRi、核糖開關、重組、同源重組、ssDNA突變誘發(mutagenesis)、RNAi、miRNA、asRNA、突變基因、敲除基因、轉位子突變誘發..)所獲得,該技術用於改變基因,使其能力較差(less-able)(即,與功能性野生型基因相比,在統計學上顯著地「能力較差」)或完全不能(如敲除的基因)產生功能性最終產物。本文所用的用語「核糖開關(riboswitch)」定義為訊息RNA的一部分,其折疊成複雜的結構,以藉由干擾轉譯而阻止表現。效應分子的結合誘導構象變化,其允許後轉錄地(post-transcriptionally)調節表現。除了以上述方式改變感興趣的基因以獲得較低的表現外,亦可藉由改變轉錄單元、啟動子、非轉譯區、核糖體結合位點、Shine Dalgarno序列或轉錄終止子獲得較低的表現。例如,可以藉由突變啟動子序列中的一個或多個鹼基對或將啟動子序列完全改變為與野生型相比具有較低表現強度的持續型(constitutive)啟動子或導致調節表現的誘導型(inducible)啟動子或導致調節表現的抑制型(repressible)啟動子來獲得較低表現或減少的表現。過量表現或表現是對所屬技術領域中具通常知識者而言通常已知的技術(例如,使用人工轉錄因子、重新設計(de novo design)啟動子序列、核糖體工程、在真染色質上引入或再引入表現模組,高複製數的質體的使用)而獲得,其中該基因是「表現盒(expression cassette)」的一部分,其關於任何序列,其中存在啟動子序列、非轉譯區域序列(含有核糖體結合序列、Shine Dalgarno或Kozak序列)、編碼序列及可選的轉錄終止子,並導致功能性活性蛋白的表現。該表現是持續性的或調節性的。The term "modified expression" of a gene refers to a change in expression compared to the wild type of the gene at any stage during the production of the encoded protein. The modified expression is a lower or higher expression compared to the wild type, where the term "higher expression" refers to an endogenous gene that is also defined as "over-expression (over-expression) of that gene. Overexpression)", or "overexpression" in the case of a heterologous gene not present in the wild-type strain. Lower expression or reduced expression is achieved by techniques commonly known to those of ordinary skill in the art (eg, using siRNA, CrispR, CrispRi, riboswitches, recombination, homologous recombination, ssDNA mutagenesis). ), RNAi, miRNA, asRNA, mutated genes, knockout genes, transposon mutagenesis..), this technique is used to alter a gene to make it less-able (ie, comparable to a functional wild-type gene) In contrast, statistically significantly "less capable") or not at all (such as a knockout gene) to produce a functional end product. The term "riboswitch" as used herein is defined as a portion of a message RNA that folds into a complex structure to prevent expression by interfering with translation. Binding of effector molecules induces conformational changes that allow post-transcriptionally regulated expression. In addition to altering the gene of interest in the manner described above to achieve lower performance, lower performance can also be achieved by altering transcription units, promoters, untranslated regions, ribosome binding sites, Shine Dalgarno sequences, or transcription terminators . For example, induction of regulated expression can be achieved by mutating one or more base pairs in the promoter sequence or by completely changing the promoter sequence to a constitutive promoter with lower expression strength compared to wild type Inducible promoters or repressible promoters that result in regulated performance to obtain lower or reduced performance. Overexpression or expression is a technique commonly known to those of ordinary skill in the art (eg, use of artificial transcription factors, de novo design of promoter sequences, ribosome engineering, introduction on euchromatin) or re-introduction of expression modules, the use of high-copy number plastids), in which the gene is part of an "expression cassette", which is about any sequence, in which there is a promoter sequence, a non-translated region sequence ( Contains ribosome binding sequences, Shine Dalgarno or Kozak sequences), coding sequences and optional transcription terminators, and results in the expression of a functionally active protein. The performance is persistent or modulating.
用語「持續型表現(constitutive expression)」定義為在一些生長條件下不受除RNA聚合酶的子單元以外的轉錄因子(如σ 70、σ 54或相關的細菌σ因子以及與RNA聚合酶核心酶共同關聯的酵母粒線體RNA聚合酶特異性因子MTF1)調節的表現。這種轉錄因子的非限制性例子是大腸桿菌中的CRP、LacI、ArcA、Cra、IclR,或啤酒酵母菌( Saccharomyces cerevisiae)中的Aft2p、Crz1p、Skn7,或枯草芽孢桿菌( B. subtilis)中的DeoR、GntR、Fur。這些轉錄因子結合在一個特定的序列上,在一些生長條件下可能阻止或促進表現。RNA聚合酶是由DNA模板合成RNA的催化機。RNA聚合酶結合特定的序列以起始轉錄,例如在原核生物宿主中經由σ因子或在酵母中經由MTF1。持續型表現提供了一個恆定的表現水準,不需要誘導或抑制。 The term "constitutive expression" is defined as the absence under some growth conditions of transcription factors other than subunits of RNA polymerase (such as σ 70 , σ 54 , or related bacterial σ factors and those associated with the RNA polymerase core enzyme. Expression of the co-associated yeast mitochondrial RNA polymerase-specific factor MTF1). Non-limiting examples of such transcription factors are CRP, LacI, ArcA, Cra, IclR in E. coli, or Aft2p, Crz1p, Skn7 in Saccharomyces cerevisiae , or B. subtilis DeoR, GntR, Fur. These transcription factors bind to a specific sequence that may prevent or promote expression under some growth conditions. RNA polymerase is a catalytic machine that synthesizes RNA from a DNA template. RNA polymerase binds to specific sequences to initiate transcription, such as via sigma factor in prokaryotic hosts or via MTF1 in yeast. Persistent performance provides a constant level of performance that does not require induction or inhibition.
用語「調節表現(regulated expression)」定義為在一些生長條件下由RNA聚合酶的子單元以外的轉錄因子(例如細菌σ因子)調節的表現。這種轉錄因子的例子已於上文描述。常見的表現調節是藉由誘導或抑制的方式獲得,例如但不限於IPTG、阿拉伯糖、鼠李糖(rhamnose)、岩藻糖、異乳糖(allo-lactose)或pH轉變或溫度轉變或碳耗竭或接受者或產生的產物或化學抑制。The term "regulated expression" is defined as an expression regulated by transcription factors other than subunits of RNA polymerase (eg, bacterial sigma factors) under some growth conditions. Examples of such transcription factors are described above. Common performance modulations are obtained by means of induction or inhibition, such as but not limited to IPTG, arabinose, rhamnose, fucose, allo-lactose or pH shift or temperature shift or carbon depletion Either acceptor or produced product or chemical inhibition.
用語「由天然誘導物的表現(expression by a natural inducer)」定義為基因的偶發性(facultative)或調節性表現,該基因僅在宿主的某種自然條件下(例如,生物體正在分娩、或在哺乳期)作為對環境變化(例如,包括但不限於激素、熱、冷、pH轉變、光、氧化或滲透壓力/訊號)的反應或取決於該宿主細胞的發育階段或細胞週期的位置(包括但不限於細胞凋亡和自噬)。The term "expression by a natural inducer" is defined as a facultative or regulatory expression of a gene that occurs only under certain natural conditions in the host (for example, the organism is giving birth, or during lactation) as a response to environmental changes (e.g., including but not limited to hormones, heat, cold, pH shifts, light, oxidative or osmotic stress/signals) or depending on the developmental stage or cell cycle position of the host cell ( including but not limited to apoptosis and autophagy).
用語「化學處理後的誘導性表現(inducible expression upon chemical treatment)」定義為一種基因的偶發性或調節性表現,該基因僅在用化學誘導物或抑制物處理時表現,其中該誘導物和抑制物包括但不限於酒精(如乙醇、甲醇)、碳水化合物(如葡萄糖、半乳糖、甘油、乳糖、阿拉伯糖、鼠李糖、岩藻糖、異乳糖)、金屬離子(如鋁、銅、鋅)、氮、磷酸鹽、IPTG、乙酸鹽、甲酸鹽、二甲苯。The term "inducible expression upon chemical treatment" is defined as an episodic or regulatory expression of a gene that is only expressed upon treatment with a chemical inducer or inhibitor, wherein the inducer and inhibitor Compounds include, but are not limited to, alcohol (eg, ethanol, methanol), carbohydrates (eg, glucose, galactose, glycerol, lactose, arabinose, rhamnose, fucose, allolactose), metal ions (eg, aluminum, copper, zinc ), nitrogen, phosphate, IPTG, acetate, formate, xylene.
用語「控制序列(control sequences)」是指由細胞轉錄和轉譯系統識別的序列,其允許將多核苷酸序列轉錄和轉譯成多肽。因此,此DNA序列對於特定的細胞或生物體中可操作結合的編碼序列的表現是必要的。此控制序列可為但不限於啟動子序列、核糖體結合序列、Shine Dalgarno序列、Kozak序列、轉錄終止子序列。例如,適用於原核生物的控制序列包括啟動子、可選的操作子序列及核糖體結合位點。已知真核細胞利用啟動子、多腺核苷酸化訊號和強化子。若作為參與多肽分泌的前蛋白表現,前序列或分泌前導的DNA可與多肽的DNA可操作地結合;若啟動子或強化子影響編碼序列的轉錄,則與編碼序列可操作地結合;或者若核糖體結合位點影響編碼序列的轉錄,則與編碼序列可操作地結合;或者若核糖體結合位點有利於轉譯,則與編碼序列可操作地結合。該控制序列可進一步用外部化學品,例如但不限於,IPTG、阿拉伯糖、乳糖、異乳糖、鼠李糖或岩藻糖經由誘導型啟動子或經由誘導或抑制該多核苷酸轉錄或轉譯成多肽的基因電路(genetic circuit)而進行控制。The term "control sequences" refers to sequences recognized by cellular transcription and translation systems that permit transcription and translation of polynucleotide sequences into polypeptides. Thus, this DNA sequence is necessary for the expression of the operably associated coding sequence in a particular cell or organism. This control sequence can be, but is not limited to, a promoter sequence, a ribosome binding sequence, a Shine Dalgarno sequence, a Kozak sequence, a transcription terminator sequence. For example, control sequences suitable for use in prokaryotes include promoters, optional operator sequences, and ribosome binding sites. Eukaryotic cells are known to utilize promoters, polyadenylation signals and enhancers. The DNA of the presequence or secretory leader may be operably associated with the DNA of the polypeptide if expressed as a preprotein involved in the secretion of the polypeptide; operably associated with the coding sequence if the promoter or enhancer affects the transcription of the coding sequence; or if A ribosome binding site affects the transcription of the coding sequence and is operably associated with the coding sequence; or if the ribosome binding site facilitates translation, it is operably associated with the coding sequence. The control sequence can be further transcribed or translated into the polynucleotide via an inducible promoter or via induction or inhibition of transcription or translation of the polynucleotide with an external chemical such as, but not limited to, IPTG, arabinose, lactose, allolactose, rhamnose or fucose. controlled by the genetic circuit of the polypeptide.
一般而言,「可操作地結合(operably linked)」表示連接的DNA序列是連續的,且在分泌前導的情況下,是連續性並且處於閱讀階段(reading phase)。然而,強化子不一定是連續的。In general, "operably linked" means that the linked DNA sequences are contiguous, and in the case of a secretory leader, contiguous and in the reading phase. However, enhancers are not necessarily continuous.
用語「野生型(wild type)」是指自然界中常見的基因或表現型情況。The term "wild type" refers to a genetic or phenotypic condition commonly found in nature.
如本文所用的用語「蛋白質的修飾表現」是指i)內源性蛋白質的較高表現或過度表現,ii)異源蛋白質的表險、或iii)與野生型(即,天然(native))蛋白質相比,具有更高活性的變體蛋白質的表現及/或過度表現。The term "modified expression of a protein" as used herein refers to i) higher expression or overexpression of an endogenous protein, ii) expression of a heterologous protein, or iii) a difference between wild-type (ie, native) Expression and/or overexpression of a variant protein with higher activity compared to the protein.
如本文所用的用語「乳腺細胞(mammary cell(s))」一般是指乳腺上皮細胞、乳腺上皮管腔細胞(mammary-epithelial luminal cell(s))或哺乳動物上皮肺泡細胞(mammalian epithelial alveolar cell(s))或其任意組合。如本文所用的用語「乳腺樣細胞(mammary-like cell(s))」一般是指具有與天然乳腺細胞相似(或實質上相似)的表型/基因型的細胞,但其衍生自非乳腺細胞來源。如此的乳腺樣細胞可以被改造,以移除至少一種不需要的基因成分及/或包含至少一種乳腺細胞典型的預定遺傳結構。乳腺樣細胞的非限制性例子可包括乳腺樣上皮細胞、乳腺樣上皮管腔細胞、展現乳腺細胞系細胞的一或多個特徵的非乳腺細胞或其任意組合。乳腺樣細胞的進一步非限制性例子可包括具有與天然乳腺細胞相似(或實質上相似)的表型的細胞,或更具體而言是與天然乳腺上皮細胞相似(或實質上相似)的表型的細胞。與天然乳腺細胞或乳腺上皮細胞相似(或實質上相似)的表型或展現出與其至少一種特徵相似(或實質上相似)的細胞可以包括自然展現出或經過改造能夠表現至少一種乳成分的細胞(例如,衍生自乳腺細胞系或非乳腺細胞系)。The term "mammary cell(s)" as used herein generally refers to mammary epithelial cells, mammary-epithelial luminal cell(s) or mammalian epithelial alveolar cells ( s)) or any combination thereof. The term "mammary-like cell(s)" as used herein generally refers to cells that have a similar (or substantially similar) phenotype/genotype to natural breast cells, but which are derived from non-mammary cells source. Such mammary gland-like cells can be engineered to remove at least one unwanted genetic component and/or contain at least one predetermined genetic structure typical of mammary gland cells. Non-limiting examples of mammary-like cells can include mammary-like epithelial cells, mammary-like epithelial luminal cells, non-mammary cells exhibiting one or more characteristics of cells of mammary cell lineages, or any combination thereof. Further non-limiting examples of mammary gland-like cells may include cells having a phenotype similar (or substantially similar) to native breast cells, or more specifically a phenotype similar (or substantially similar) to native mammary epithelial cells cells. Cells that have a phenotype similar (or substantially similar) to, or exhibit at least one characteristic of, native breast cells or mammary epithelial cells may include cells that naturally exhibit or are engineered to express at least one milk component (eg, derived from breast or non-mammary cell lines).
如本文所用的用語「非乳腺細胞(non-mammary cell(s))」一般可包括非乳腺系的任意細胞。在本發明的內文中,非乳腺細胞可以是能夠被改造成表現至少一種乳成分的任何哺乳動物細胞。如此的非乳腺細胞的非限制性例子包括肝細胞、血細胞、腎細胞、臍帶血細胞、上皮細胞、表皮細胞、肌細胞、纖維母細胞、間質細胞或其任意組合。在一些情況下,分子生物學和基因組編輯技術可以被設計成同步消除、沉默或弱化無數的基因。The term "non-mammary cell(s)" as used herein may generally include any cell of a non-mammary lineage. In the context of the present invention, a non-mammary gland cell can be any mammalian cell that can be engineered to express at least one milk component. Non-limiting examples of such non-mammary cells include hepatocytes, blood cells, kidney cells, cord blood cells, epithelial cells, epidermal cells, muscle cells, fibroblasts, interstitial cells, or any combination thereof. In some cases, molecular biology and genome editing technologies can be engineered to simultaneously eliminate, silence or attenuate countless genes.
在本申請中,除非另有明確說明,「能夠…<動詞>(capable of…<verb>)」和「能夠.....<動詞>(capable to…<verb>)」的表現較佳以該動詞的主動語態代替,反之亦然。例如,表現「能夠表現(capable of expressing)」較佳替換為「表現(expresses)」,反之亦然,亦即,「表現」較佳替換為「能夠表現」。In this application, unless expressly stated otherwise, "capable of...<verb>" and "capable of...<verb>" (capable to...<verb>)" are preferred Substitute with the active voice of the verb and vice versa. For example, the expression "capable of expressing" is preferably replaced with "expresses", and vice versa, that is, "capable of expressing" is preferably replaced with "capable of expressing".
在本文中所用的用語「變體(Variant(s))」是分別與參照多核苷酸或多肽不同但是保留基本特性的多核苷酸或多肽。多核苷酸的典型變體在核苷酸序列上與另一種參照多核苷酸不同。變體的核苷酸序列中的變化可以改變或可以不改變由參照多核苷酸編碼的多肽的胺基酸序列。核苷酸變化可導致由參照序列編碼的多肽中的胺基酸取代、添加、缺失、融合和截短,如下文所述。多肽的典型變體在胺基酸序列上與另一種參照多肽不同。一般而言,限制差異以使參照多肽和變體的序列在整體上緊密相似,並且在許多區域中是相同的。變體和參照多肽可以在胺基酸序列中有以任意組合的一或多個取代、添加、缺失的不同。取代或插入的胺基酸殘基可以是或可以不是由遺傳密碼編碼的胺基酸殘基。多核苷酸或多肽的變體可以是天然存在的,諸如對偶基因變體,或者其可以是不已知天然存在的變體。多核苷酸和多肽的非天然存在的變體可以藉由突變誘發技術、藉由直接合成和藉由所屬技術領域中具通常知識者已知的其他重組方法製得。As used herein, the term "Variant(s)" is a polynucleotide or polypeptide that differs from a reference polynucleotide or polypeptide, respectively, but retains essential properties. A typical variant of a polynucleotide differs in nucleotide sequence from another reference polynucleotide. Changes in the nucleotide sequence of the variant may or may not alter the amino acid sequence of the polypeptide encoded by the reference polynucleotide. Nucleotide changes can result in amino acid substitutions, additions, deletions, fusions and truncations in the polypeptide encoded by the reference sequence, as described below. A typical variant of a polypeptide differs in amino acid sequence from another reference polypeptide. In general, differences are constrained so that the sequences of the reference polypeptide and the variant are closely similar overall and are identical in many regions. The variant and reference polypeptide may differ in amino acid sequence by one or more substitutions, additions, deletions, in any combination. A substituted or inserted amino acid residue may or may not be an amino acid residue encoded by the genetic code. A variant of a polynucleotide or polypeptide may be a naturally occurring variant, such as a counterpart gene variant, or it may be a variant that is not known to be naturally occurring. Non-naturally occurring variants of polynucleotides and polypeptides can be made by mutagenesis techniques, by direct synthesis, and by other recombinant methods known to those of ordinary skill in the art.
本文所用的用語多肽的「衍生物(derivative)」是指在多肽的胺基酸序列中可能包含胺基酸殘基的缺失、添加或取代,但其造成無徵狀變化(silent change),從而產生功能等效的多肽。胺基酸的取代可以基於相關殘基的極性、電荷、溶解度、疏水性、親水性及/或雙性本質(amphipathic nature)的相似性來進行。例如,非極性(疏水性)胺基酸包括丙胺酸、白胺酸、異白胺酸、纈胺酸、脯胺酸、苯丙胺酸、色胺酸和甲硫胺酸;平面中性胺基酸包括甘胺酸、絲胺酸、蘇胺酸、半胱胺酸、酪胺酸、天冬醯胺和麩醯胺;帶正電(鹼性)胺基酸包括精胺酸、離胺酸和組胺酸;帶負電(酸性)胺基酸包括天冬胺酸和麩胺酸。在本發明的內容中,本文所用的衍生多肽是指能夠展現出與原始多肽實質上相似的體外及/或體內活性的多肽,其如藉由許多標準中的任意來判斷,包括但不限於酶活性,並且在轉譯中或轉譯後可進行不同的修飾。此外,非經典胺基酸或化學胺基酸類似物可以作為替代物或添加物引入原始多肽序列中。As used herein, the term "derivative" of a polypeptide refers to deletions, additions, or substitutions of amino acid residues that may include in the amino acid sequence of a polypeptide, but which result in a silent change such that A functionally equivalent polypeptide is produced. Substitution of amino acids can be made based on similarity in polarity, charge, solubility, hydrophobicity, hydrophilicity, and/or amphipathic nature of the relevant residues. For example, non-polar (hydrophobic) amino acids include alanine, leucine, isoleucine, valine, proline, phenylalanine, tryptophan, and methionine; planar neutral amino acids Includes glycine, serine, threonine, cysteine, tyrosine, asparagine, and glutamine; positively charged (basic) amino acids include arginine, lysine, and Histamine; negatively charged (acidic) amino acids include aspartic acid and glutamic acid. In the context of the present invention, a derived polypeptide as used herein refers to a polypeptide capable of exhibiting substantially similar in vitro and/or in vivo activities as the original polypeptide, as judged by any of a number of criteria, including but not limited to enzymes activity, and various modifications can be made during or after translation. In addition, non-classical amino acids or chemical amino acid analogs can be introduced into the original polypeptide sequence as substitutes or additions.
在一些實施例中,本發明設想藉由修飾本發明中使用的酶結構來製備功能性變體。可以藉由胺基酸取代、缺失、添加或其組合來產生變體。例如,有理由期望用異白胺酸或纈胺酸單獨取代白胺酸、用麩胺酸單獨取代天冬胺酸、用絲胺酸單獨取代蘇胺酸、或用結構上相關的胺基酸對胺基酸的相似取代(例如,保守突變)不會對所得分子的生物活性產生重大影響。保守取代是發生在與其側鏈相關的胺基酸家族內的取代。藉由評估變體多肽以類似於野生型多肽的方式在細胞中產生應答的能力,可以容易地確定本發明的多肽的胺基酸序列中的改變是否導致功能性同源物。In some embodiments, the present invention contemplates making functional variants by modifying the structure of the enzymes used in the present invention. Variants can be created by amino acid substitutions, deletions, additions, or combinations thereof. For example, it is reasonable to expect isoleucine or valine to replace leucine alone, glutamic acid to replace aspartic acid, serine acid to replace threonine alone, or a structurally related amino acid to replace Similar substitutions (eg, conservative mutations) to amino acids do not have a significant effect on the biological activity of the resulting molecule. Conservative substitutions are those that take place within a family of amino acids related to their side chains. Whether a change in the amino acid sequence of a polypeptide of the invention results in a functional homologue can be readily determined by assessing the ability of the variant polypeptide to generate a response in cells in a manner similar to the wild-type polypeptide.
本文所使用的用語「功能性同源物(functional homolog)」描述具有序列相似性(換句而言,同源性)並且還共用諸如生化活性的至少一功能特徵的那些分子(Altenhoff et al.,PLoS Comput. Biol. 8 (2012) e1002514)。功能性同源物通常對於相同的特徵產生相似的,但不一定相同的程度。功能上同源的蛋白質具有相同的特徵,其中由一個同源物產生的定量測量值為另一個的至少10%;更典型為原始分子所產生的定量測量值的至少20%,在約30%和約40%之間;例如,在約50%和約60%之間;在約70%和約80%之間;或者在約90%和約95%之間;在約98%和約100%之間,或者超過100%。因此,當分子具有酶活性時,功能性同源物將具有與原始酶相比的上述酶活性百分比。當分子為DNA結合分子(例如,多肽)時,則同源物將具有與原始分子相比,藉由結合分子的重量所測定的上述結合親和力百分比。 The term "functional homolog" as used herein describes those molecules that share sequence similarity (in other words, homology) and also share at least one functional characteristic, such as biochemical activity (Altenhoff et al. , PLoS Comput. Biol. 8 (2012) e1002514). Functional homologues generally yield similar, but not necessarily the same, degree for the same characteristics. Functionally homologous proteins have the same characteristics, wherein the quantitative measure produced by one homolog is at least 10% of the other; more typically at least 20% of the quantitative measure produced by the original molecule, at about 30% and between about 40%; for example, between about 50% and about 60%; between about 70% and about 80%; or between about 90% and about 95%; between about 98% and about 100% %, or more than 100%. Thus, when the molecule has enzymatic activity, the functional homologue will have the aforementioned percentage of enzymatic activity compared to the original enzyme. When the molecule is a DNA binding molecule (eg, a polypeptide), then the homologue will have the above-described percentage of binding affinity as determined by the weight of the binding molecule compared to the original molecule.
功能性同源物和參照多肽可為天然存在的多肽,並且序列相似性可因趨同或發散的演化事件造成。功能性同源物有時被稱為異種同源物,其中「異種同源物(ortholog)」是指在另一物種中與參考基因或蛋白質功能等效的同源基因或蛋白質。Functional homologs and reference polypeptides can be naturally occurring polypeptides, and sequence similarity can result from convergent or divergent evolutionary events. Functional homologs are sometimes referred to as xenologs, where "ortholog" refers to a homologous gene or protein that is functionally equivalent to a reference gene or protein in another species.
異種同源基因(orthologous genes)是指不同物種中的同源基因,該基因藉由垂直遺傳起源於最後共同祖先的單一基因,其中的基因及其主要功能是保守的。同源基因是指在兩個物種中由共同的祖先遺傳的基因。Orthologous genes refer to homologous genes in different species, which originate from a single gene in the last common ancestor through vertical inheritance, and the genes and their main functions are conserved. Homologous genes refer to genes inherited from a common ancestor in two species.
用語「異種同源物(ortholog)」在提到一特定物種的胺基酸或核苷酸/核酸序列時,是指來自不同物種的相同胺基酸或核苷酸/核酸序列。應該理解的是,當兩個序列經由線性血緣關係從一個共同祖先序列衍生出來、及/或在其序列和生物功能方面密切相關時,該兩個序列為彼此的異種同源物。異種同源物通常具有高度的序列同一性,但不一定(且經常不一定)具有100%的序列同一性。The term "ortholog" when referring to an amino acid or nucleotide/nucleic acid sequence of a particular species refers to the same amino acid or nucleotide/nucleic acid sequence from a different species. It will be understood that two sequences are heterologous to each other when they are derived from a common ancestral sequence via linear kinship and/or are closely related in their sequence and biological function. Heterologs usually have a high degree of sequence identity, but do not necessarily (and often do not) have 100% sequence identity.
同種同源(Paralogous)基因是由基因複製事件產生的同源基因。同種同源基因通常屬於同一物種,但其非必須的。同種同源物可分為內同種同源物(in-paralogs)(發生在物種演變事件之後的同種同源對)和外同種同源物(out-paralogs)(發生在物種演變事件之前的同種同源對)。物種之間的外同種同源物是指兩個生物體之間在物種演變前因複製而存在的一對同種同源物。在物種內,外同種同源物是存在於同一生物體內的一對同種同源物,但其複製是發生在物種演變之後。同種同源物通常具有相同或相似的功能。Paralogous genes are homologous genes that result from gene duplication events. Homologous genes usually belong to the same species, but they are not required. Homologs can be divided into in-paralogs (pairs of homologs that occur after a species evolution event) and out-paralogs (same species that occur before a species evolution event) homologous pair). Exologs between species refer to a pair of homologs that existed between two organisms due to duplication before the evolution of the species. Within a species, a ectolog is a pair of homologs that exist within the same organism, but whose duplication occurs after the evolution of the species. Homologs usually have the same or similar function.
可以藉由分析核苷酸和多肽序列比對來確定功能性同源物。例如,對核苷酸或多肽序列的資料庫進行查詢可以確定感興趣的多肽的同源物,如生質調節多肽、醣基轉移酶、參與核苷酸活性糖合成的蛋白質或膜轉運蛋白。序列分析可以關於非冗餘資料庫的BLAST、倒數(Reciprocal BLAST)或PSI-BLAST分析,其分別使用生質調節多肽、醣基轉移酶、參與核苷酸活性糖合成的蛋白質或膜轉運蛋白的胺基酸序列作為參照序列。在一些情況下,胺基酸序列是由核苷酸序列所推導出來。通常情況下,資料庫中序列一致性大於40%的那些多肽是進一步評估是否分別適合作為生質調節多肽、醣基轉移酶、參與核苷酸活性糖合成的蛋白質或膜轉運蛋白的候選者。胺基酸序列的相似性允許保守的胺基酸取代,如用一個疏水殘基取代另一個疏水殘基、或用一個極性殘基取代另一個極性殘基、或用一個酸性胺基酸取代另一個酸性胺基酸、或用一個鹼性胺基酸取代另一個鹼性胺基酸等。較佳的是,保守取代是指一些組合,例如由丙胺酸取代甘胺酸,反之亦然;由甲硫胺酸取代纈胺酸、異白胺酸和白胺酸,反之亦然;由麩胺酸取代天冬胺酸,反之亦然;由麩醯胺取代天冬醯胺,反之亦然;由蘇胺酸取代絲胺酸,反之亦然;由精胺酸取代離胺酸,反之亦然;由甲硫胺酸取代半胱胺酸,反之亦然;以及由色胺酸取代苯丙胺酸和酪胺酸,反之亦然。如果需要,可以對這些候選者進行人工檢查,以縮小進一步評估的候選者的數量。人工檢查可藉由選擇似乎具有調節產生力的多肽中存在的域(domains)(例如,保守的功能域)的候選者來進行。Functional homologs can be determined by analyzing nucleotide and polypeptide sequence alignments. For example, queries against databases of nucleotide or polypeptide sequences can identify homologs of polypeptides of interest, such as biomass-regulating polypeptides, glycosyltransferases, proteins involved in the synthesis of nucleotide-active sugars, or membrane transporters. Sequence analysis can be BLAST, Reciprocal BLAST, or PSI-BLAST analysis on non-redundant databases using bio-modulating polypeptides, glycosyltransferases, proteins involved in nucleotide-active sugar synthesis, or membrane transporters, respectively. The amino acid sequence served as a reference sequence. In some cases, the amino acid sequence is deduced from the nucleotide sequence. Typically, those polypeptides in the database with greater than 40% sequence identity are candidates for further evaluation as suitable for further evaluation as biomass-regulating polypeptides, glycosyltransferases, proteins involved in the synthesis of nucleotide-active sugars, or membrane transporters, respectively. The similarity of amino acid sequences allows for conservative amino acid substitutions, such as substitution of one hydrophobic residue for another, or substitution of one polar residue for another, or substitution of one acidic amino acid for another. One acidic amino acid, or replacing one basic amino acid with another basic amino acid, etc. Preferably, conservative substitutions refer to combinations such as alanine for glycine and vice versa; methionine for valine, isoleucine and leucine and vice versa; Amino acid replaces aspartic acid and vice versa; glutamine replaces asparagine and vice versa; threonine replaces serine and vice versa; arginine replaces lysine and vice versa of course; substitution of cysteine by methionine, and vice versa; and substitution of amphetamine and tyrosine by tryptophan, and vice versa. If desired, these candidates can be manually inspected to narrow down the number of candidates for further evaluation. Manual inspection can be performed by selecting candidates for domains (eg, conserved functional domains) present in the polypeptide that appear to have the ability to modulate production.
「片段(Fragment)」,就多核苷酸而言,是指選殖體或多核苷酸分子的任何部分,特別是多核苷酸的部分,其保留全長多核苷酸分子的可用的功能特徵。有用的片段包括寡核苷酸和多核苷酸,其可用於雜交或擴增技術或者複製、轉錄或轉譯的調控。「多核苷酸片段」是指多核苷酸SEQ ID NO(或Genbank NO.)的任何子序列,通常包括或由該多核苷酸SEQ ID NO(或Genbank NO.)的至少約9、10、11、12個連續核苷酸所組成,例如本文提供的任何多核苷酸序列的至少約30個核苷酸或至少約50個核苷酸。示例性片段可另外或替代地包括片段,該片段包括編碼多肽的保守家族域的區域、實質上由該區域所組成、或由該區域所組成。示例性片段可另外或替代地包括片段,該片段包括多肽的保守域。因此,多核苷酸SEQ ID NO(或Genbank NO.)的片段較佳地表示包括或由該多核苷酸SEQ ID NO(或Genbank NO.)所組成的核苷酸序列,其中缺失的連續核苷酸不超過200、150、100、50或25個,較佳為缺失的連續核苷酸不超過50個,並且保留全長多核苷酸分子的可用的功能特徵(例如,活性),其可由所屬技術領域中具通常知識者藉由常規實驗進行評估。另外,多核苷酸SEQ ID NO(或Genbank NO.)的片段較佳地表示包括來自該多核苷酸SEQ ID NO(或Genbank NO.)的一定量的連續核苷酸或由該連續核苷酸所組成的核苷酸序列,其中該連續核苷酸的量為該多核甘酸SEQ ID NO(或Genbank NO.)全長的至少為50.0 %、60.0 %、70.0 %、80.0 %、81.0 %、82.0 %、83.0 %、84.0 %、85.0 %、86.0 %、87.0 %、88.0 %、89.0 %、90.0 %、91.0 %、92.0 %、93.0 %、94. 0 %、95.0 %、95.5 %、96.0 %、96.5 %、97.0 %、97.5 %、98.0 %、98.5 %、99.0 %、99.5 %、100 %,較佳至少80.0 %,更佳至少87.0 %,又更佳至少90%,又更佳至少95. 0 %,最佳至少97.0 %,並保留了全長多核苷酸分子的可用的功能特徵(例如,活性)。因此,多核苷酸SEQ ID NO(或Genbank NO.)的片段較佳地表示包括或由該多核苷酸SEQ ID NO(或Genbank NO.)組成的核苷酸序列,其中缺少一數量的連續核苷酸,並且該數量不超過該多核苷酸SEQ ID NO(或Genbank NO.)全長的50.0 %、40.0 %、30.0 %,較佳不超過該多核苷酸SEQ ID NO(或Genbank NO.)全長的20.0 %、15.0 %、10.0 %、9.0 %、8.0 %、7.0 %、6.0 %、5.0 %、4.5 %、4. 0 %、3.5 %、3.0 %、2.5 %、2.0 %、1.5 %、1.0 %、0.5 %,更佳不超過15.0 %,又更佳不超過10.0 %,又更佳不超過5.0 %,最佳不超過2.5 %,並且其中該片段保留了全長多核苷酸分子的可用的功能特徵(例如,活性),該特徵可由所屬技術領域中具通常知識者常規評估。"Fragment", in relation to a polynucleotide, refers to a colony or any portion of a polynucleotide molecule, particularly a portion of a polynucleotide, that retains the functional characteristics of a full-length polynucleotide molecule. Useful fragments include oligonucleotides and polynucleotides, which are useful in hybridization or amplification techniques or the regulation of replication, transcription or translation. "Polynucleotide fragment" refers to any subsequence of a polynucleotide SEQ ID NO (or Genbank NO.), typically including or consisting of at least about 9, 10, 11 of the polynucleotide SEQ ID NO (or Genbank NO.) , 12 contiguous nucleotides, eg, at least about 30 nucleotides or at least about 50 nucleotides of any of the polynucleotide sequences provided herein. Exemplary fragments may additionally or alternatively include fragments that include, consist essentially of, or consist of a region encoding a conserved family domain of a polypeptide. Exemplary fragments may additionally or alternatively include fragments that include conserved domains of polypeptides. Therefore, a fragment of a polynucleotide SEQ ID NO (or Genbank NO.) preferably represents a nucleotide sequence comprising or consisting of the polynucleotide SEQ ID NO (or Genbank NO.), wherein the deleted contiguous nucleosides No more than 200, 150, 100, 50, or 25 acids, preferably no more than 50 consecutive nucleotides deleted, and retain useful functional characteristics (eg, activity) of the full-length polynucleotide molecule, which can be obtained from the art Those with ordinary knowledge in the field are assessed by routine experimentation. In addition, a fragment of a polynucleotide SEQ ID NO (or Genbank NO.) is preferably represented as comprising or consisting of a certain amount of contiguous nucleotides from the polynucleotide SEQ ID NO (or Genbank NO.) The composed nucleotide sequence, wherein the amount of the continuous nucleotide is at least 50.0%, 60.0%, 70.0%, 80.0%, 81.0%, 82.0% of the full length of the polynucleotide SEQ ID NO. (or Genbank NO.) , 83.0 %, 84.0 %, 85.0 %, 86.0 %, 87.0 %, 88.0 %, 89.0 %, 90.0 %, 91.0 %, 92.0 %, 93.0 %, 94.0 %, 95.0 %, 95.5 %, 96.0 %, 96.5 % , 97.0%, 97.5%, 98.0%, 98.5%, 99.0%, 99.5%, 100%, preferably at least 80.0%, more preferably at least 87.0%, still more preferably at least 90%, still more preferably at least 95.0%, Optimally at least 97.0% and retain the functional characteristics (eg, activity) of the full-length polynucleotide molecule available. Accordingly, a fragment of a polynucleotide of SEQ ID NO (or Genbank NO.) preferably represents a nucleotide sequence comprising or consisting of the polynucleotide of SEQ ID NO (or Genbank NO.) in which a number of contiguous nuclei are missing nucleotides, and the number does not exceed 50.0%, 40.0%, 30.0% of the full length of the polynucleotide SEQ ID NO (or Genbank NO.), preferably not more than the full length of the polynucleotide SEQ ID NO (or Genbank NO.) of the , 0.5%, better not more than 15.0%, better not more than 10.0%, better not more than 5.0%, best not more than 2.5%, and wherein the fragment retains the available functional characteristics of the full-length polynucleotide molecule (eg, activity), this characteristic can be routinely assessed by one of ordinary skill in the art.
在本申請中,多核苷酸的序列可以SEQ ID NO表示,也可以用GenBank NO表示。因此,用語 「多核苷酸SEQ ID NO」和「多核苷酸GenBank NO. 」可互換使用,除非另有明確說明。片段可以額外地或替代地包括多肽和蛋白質分子的子序列、或多肽的子序列。在一些情況下,片段或域是多肽的子序列,其以與完整多肽實質上相同的方式、較佳為相似程度的方式執行完整多肽的至少一種生物功能。本文定義的「多肽的子序列(subsequence of the polypeptide)」是指來自多肽衍生的連續的胺基酸殘基的序列。例如,多肽片段可包括可識別的結構模體或功能域,如與DNA啟動子區域結合的DNA結合位或結合域、活化域或蛋白質-蛋白質相互作用的域,並可啟始轉錄。片段可從少至3個胺基酸殘基到完整多肽的全長內改變大小,例如至少約20個胺基酸殘基的長度,例如至少約30個胺基酸殘基的長度。因此,多肽SEQ ID NO(或UniProt ID或Genbank NO.)的片段較佳地表示包括或由該多肽SEQ ID NO(或UniProt ID或Genbank NO.)組成的多肽序列,其中不缺少超過80、60、50、40、30、20或15個連續的胺基酸殘基,較佳不缺少超過40個連續的胺基酸殘基,並且其以與完整多肽實質上相同的方式、較佳為相似或更大程度的方式執行完整多肽的至少一種生物功能,其可由所屬技術領域中具通常知識者常規評估。另外,多肽SEQ ID NO(或UniProt ID或Genbank NO.)的片段較佳地表示包括或由來自該多肽SEQ ID NO(或UniProt ID或Genbank NO.)的連續胺基酸殘基數量組成的多肽序列,其中該連續胺基酸殘基的數量為該多肽SEQ ID NO(或UniProt ID或Genbank NO)全長的至少50.0 %、60.0 %、70.0 %、80.0 %、81.0 %、82.0 %、83.0 %、84. 0 %、85.0 %、86.0 %、87.0 %、88.0 %、89.0 %、90.0 %、91.0 %、92.0 %、93.0 %、94.0 %、95.0 %、95.5%、96.0 %、96.5 %、97.0 %、97.5 %、98. 0 %、98.5 %、99.0 %、99.5 %、100 %,較佳至少80.0 %,更佳至少87.0 %,又更佳至少90.0 %,又更佳至少95.0 %,最佳至少97.0 %,並其以與完整多肽實質上相同的方式、較佳為相似或更大程度的方式執行完整多肽的至少一種生物功能,其可由所屬技術領域中具通常知識者常規評估。因此,多肽SEQ ID NO(或UniProt ID或Genbank NO.)的片段較佳地表示包括或由該多肽SEQ ID NO(或UniProt ID或Genbank NO.)組成的多肽序列,其中缺少一數量的連續胺基酸殘基,並且不超過該多肽SEQ ID NO(或UniProt ID或Genbank NO.)全長的50.0 %、40.0 %、30.0 %,較佳不超過該多肽SEQ ID NO(或UniProt ID或Genbank NO.)全長的20.0 %、15.0 %、10.0 %、9.0 %、8.0 %、7.0 %、6.0 %、5.0 %、4.5 %、4.0 %、3.5 %、3.0 %、2.5 %、2.0 %、1.5 %、1.0 %、0.5 %,更佳不超過15.0 %,又更佳不超過10.0 %,又更佳不超過5.0 %,最佳不超過2.5 %,並且其以與完整多肽實質上相同的方式、較佳為相似或更大程度的方式執行完整多肽的至少一種生物功能,其可由所屬技術領域中具通常知識者常規評估。In the present application, the sequence of the polynucleotide can be represented by SEQ ID NO or GenBank NO. Accordingly, the terms "polynucleotide SEQ ID NO" and "polynucleotide GenBank NO." are used interchangeably unless expressly stated otherwise. Fragments may additionally or alternatively comprise subsequences of polypeptides and protein molecules, or subsequences of polypeptides. In some cases, a fragment or domain is a subsequence of a polypeptide that performs at least one biological function of the intact polypeptide in substantially the same manner, preferably to a similar degree, as the intact polypeptide. A "subsequence of the polypeptide" as defined herein refers to a sequence of contiguous amino acid residues derived from a polypeptide. For example, polypeptide fragments can include identifiable structural motifs or functional domains, such as DNA binding sites or binding domains, activation domains, or protein-protein interaction domains that bind to DNA promoter regions and can initiate transcription. Fragments can vary in size from as few as 3 amino acid residues to the full length of the complete polypeptide, eg, at least about 20 amino acid residues in length, eg, at least about 30 amino acid residues in length. Therefore, a fragment of a polypeptide SEQ ID NO (or UniProt ID or Genbank NO.) preferably represents a polypeptide sequence comprising or consisting of the polypeptide SEQ ID NO (or UniProt ID or Genbank NO.), wherein no lack of more than 80, 60 , 50, 40, 30, 20 or 15 contiguous amino acid residues, preferably not lacking more than 40 contiguous amino acid residues, and which are in substantially the same manner, preferably similar, to the intact polypeptide or to a greater extent, perform at least one biological function of the intact polypeptide, which can be routinely assessed by one of ordinary skill in the art. In addition, a fragment of a polypeptide SEQ ID NO (or UniProt ID or Genbank NO.) preferably represents a polypeptide comprising or consisting of a number of consecutive amino acid residues from the polypeptide SEQ ID NO (or UniProt ID or Genbank NO.) sequence, wherein the number of consecutive amino acid residues is at least 50.0%, 60.0%, 70.0%, 80.0%, 81.0%, 82.0%, 83.0%, of the full length of the polypeptide SEQ ID NO (or UniProt ID or Genbank NO), 84.0%, 85.0%, 86.0%, 87.0%, 88.0%, 89.0%, 90.0%, 91.0%, 92.0%, 93.0%, 94.0%, 95.0%, 95.5%, 96.0%, 96.5%, 97.0%, 97.5%, 98.0%, 98.5%, 99.0%, 99.5%, 100%, preferably at least 80.0%, more preferably at least 87.0%, still more preferably at least 90.0%, still more preferably at least 95.0%, most preferably at least 97.0% %, and it performs at least one biological function of the intact polypeptide in substantially the same manner, preferably in a similar or greater manner, as the intact polypeptide, which can be routinely assessed by those of ordinary skill in the art. Thus, a fragment of a polypeptide SEQ ID NO (or UniProt ID or Genbank NO.) preferably represents a polypeptide sequence comprising or consisting of the polypeptide SEQ ID NO (or UniProt ID or Genbank NO.), wherein a number of contiguous amines are lacking amino acid residues, and not more than 50.0%, 40.0%, 30.0% of the full length of the polypeptide SEQ ID NO (or UniProt ID or Genbank NO.), preferably not more than the polypeptide SEQ ID NO (or UniProt ID or Genbank NO.) ) 20.0 %, 15.0 %, 10.0 %, 9.0 %, 8.0 %, 7.0 %, 6.0 %, 5.0 %, 4.5 %, 4.0 %, 3.5 %, 3.0 %, 2.5 %, 2.0 %, 1.5 %, 1.0 % of the full length , 0.5%, better not more than 15.0%, better not more than 10.0%, better not more than 5.0%, best not more than 2.5%, and in substantially the same way as the intact polypeptide, preferably similar or to a greater extent, perform at least one biological function of the intact polypeptide, which can be routinely assessed by one of ordinary skill in the art.
在本申請中,多肽的序列可以SEQ ID NO表示,或者以UniProt ID或GenBank No.表示。因此,用語「多肽SEQ ID NO」以及「多肽Uniprot ID」以及「多肽GenBank No.」可以互換使用,除非另有明確說明。In the present application, the sequence of the polypeptide can be represented by SEQ ID NO, or by UniProt ID or GenBank No. Accordingly, the terms "polypeptide SEQ ID NO" and "polypeptide Uniprot ID" and "polypeptide GenBank No." are used interchangeably unless expressly stated otherwise.
較佳地,多肽的片段是功能片段,其具有其衍生的多肽的至少一種特性或活性,較佳是相似或更大的程度。例如,功能片段可以包括多肽的功能域或保守域。可理解的是,多肽或其片段可具有保守的胺基酸取代,這些取代對多肽的活性實質上沒有影響。所謂的保守取代是指用一個疏水胺基酸取代另一個疏水胺基酸、或用一個極性胺基酸取代另一個極性胺基酸、或用一個酸性胺基酸取代另一個酸性胺基酸、或用一個鹼性胺基酸取代另一個鹼性胺基酸等。較佳的是,保守替代是指組合,例如由丙胺酸取代甘胺酸,反之亦然;由甲硫胺酸取代纈胺酸、異白胺酸和白胺酸,反之亦然;由麩胺酸取代天冬胺酸,反之亦然;由麩醯胺取代天冬醯胺,反之亦然;由蘇胺酸取代絲胺酸,反之亦然;由精胺酸取代離胺酸,反之亦然;由甲硫胺酸取代半胱胺酸,反之亦然;以及由色胺酸取代苯丙胺酸和酪胺酸,反之亦然。例如,一個域可以藉由Pfam(El-Gebali et al., Nucleic Acids Res. 47 (2019) D427-D432)或保守結構域資料庫(CDD)(https://www.ncbi.nlm.nih.gov/cdd)(Lu et al., Nucleic Acids Res. 48 (2020) D265-D268)指定進行特徵化。每個資料庫的內容在每次發佈時都是固定的,不得更改。當改變特定資料庫的內容時,此特定資料庫會接收新的發佈版本並有新的發佈日期。每個資料庫的所有發佈版本及其相應的發佈日期和在這些特定的發佈日期所注釋的特定內容都是可用的,也是所屬技術領域中具通常知識者所知。本文使用的PFAM資料庫(https://pfam.xfam.org/)是2020年6月11日發佈的Pfam 33.1版本。蛋白質序列資訊和功能資訊可以由蛋白質序列和注釋資料的綜合資源提供,例如通用蛋白質資源(UniProt)(www.uniprot.org)(Nucleic Acids Res. 2021, 49(D1), D480-D489)。UniProt包括被稱為UniProt知識庫(UniProtKB)的專業且豐富的蛋白質資料庫,以及UniProt參考簇(UniRef)和UniProt檔案(UniParc)。UniProt識別碼(UniProt ID)對存在於資料庫中的每個蛋白質都是獨特的。本文中使用的UniProt ID是2021年5月5日UniProt資料庫版本中的UniProt ID。不具有UniProt ID的蛋白質在本文中使用各自的GenBank登錄號(GenBank No.),該登錄號存在於2021年5月5日的NIH基因序列資料庫(https://www.ncbi.nlm.nih.gov/genbank/)(Nucleic Acids Res. 2013, 41(D1), D36-D42)版本中。Preferably, a fragment of a polypeptide is a functional fragment having at least one property or activity of the polypeptide from which it is derived, preferably to a similar or greater extent. For example, functional fragments can include functional or conserved domains of polypeptides. It is understood that polypeptides or fragments thereof may have conservative amino acid substitutions that have no substantial effect on the activity of the polypeptide. The so-called conservative substitution refers to the substitution of one hydrophobic amino acid for another hydrophobic amino acid, or the substitution of one polar amino acid for another polar amino acid, or the substitution of one acidic amino acid for another acidic amino acid, Or replace another basic amino acid with one basic amino acid, etc. Preferably, conservative substitution refers to a combination, such as substitution of alanine for glycine, and vice versa; substitution of valine, isoleucine, and leucine by methionine, and vice versa; substitution of glutamine Acid replaces aspartic acid and vice versa; glutamine replaces asparagine and vice versa; threonine replaces serine and vice versa; arginine replaces lysine and vice versa ; substitution of cysteine by methionine, and vice versa; and substitution of amphetamine and tyrosine by tryptophan, and vice versa. For example, a domain can be identified by Pfam (El-Gebali et al., Nucleic Acids Res. 47 (2019) D427-D432) or the Conserved Domain Database (CDD) (https://www.ncbi.nlm.nih. gov/cdd) (Lu et al., Nucleic Acids Res. 48 (2020) D265-D268) specified for characterization. The content of each repository is fixed with each release and may not be changed. When the content of a specific repository is changed, this specific repository receives the new release version and has a new release date. All published versions of each repository with their corresponding publication dates and specific content annotated at those specific publication dates are available and known to those of ordinary skill in the art. The PFAM repository (https://pfam.xfam.org/) used in this article is Pfam 33.1 version released on June 11, 2020. Protein sequence information and functional information can be provided by comprehensive sources of protein sequence and annotation data, such as the Universal Protein Resource (UniProt) (www.uniprot.org) (Nucleic Acids Res. 2021, 49(D1), D480-D489). UniProt includes a specialized and rich protein database known as the UniProt Knowledge Base (UniProtKB), as well as the UniProt Reference Cluster (UniRef) and the UniProt Archive (UniParc). The UniProt ID (UniProt ID) is unique to each protein present in the database. The UniProt ID used in this article is the UniProt ID from the May 5, 2021 UniProt Repository release. Proteins that do not have UniProt IDs use their respective GenBank accession numbers (GenBank No.) available in the NIH Gene Sequence Database on May 5, 2021 (https://www.ncbi.nlm.nih .gov/genbank/) (Nucleic Acids Res. 2013, 41(D1), D36-D42) edition.
在本發明中,多肽序列延伸用於指本發明中使用的N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶及N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶的片段,這些片段為那些N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶及N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶所共通的。如此的多肽延伸是以單字母代碼的胺基酸序列的形式書寫。如果在如此的多肽延伸的特定位置上的胺基酸可為幾個胺基酸,該特定位置將為胺基酸代碼X。除非本文另有描述,字母「X」是指可能的任何胺基酸。用語(Xn)是指由數量n個胺基酸殘基X組成的蛋白質序列的延伸,其中每個所述X是可能的任何胺基酸,且其中n是2、3、4或更多。用語(Xm)是指由數量m個胺基酸殘基X組成的蛋白質序列的延伸,其中每個所述X是可能的任何胺基酸,其中m是2、3、4或更多。用語(Xp)是指由數量p個胺基酸殘基X組成的蛋白質序列的延伸,其中每個所述X是可能的任何胺基酸,其中p是2、3、4或更多。用語「[X,無A、G或S]」是指任何胺基酸,其排除胺基酸殘基丙胺酸(A)、甘胺酸(G)或絲胺酸(S)。用語「[X,無F、H、W或Y]」是指任何胺基酸,其排除胺基酸殘基苯丙胺酸(F)、組胺酸(H)、色胺酸(W)和酪胺酸(Y)。In the present invention, polypeptide sequence extension is used to refer to N-acetylglucosamine b-1,3-galactosyltransferase and N-acetylglucosamine b-1,4-galactosyltransferase used in the present invention Fragments of enzymes that are common to those N-acetylglucosamine b-1,3-galactosyltransferases and N-acetylglucosamine b-1,4-galactosyltransferases. Such polypeptide extensions are written in the form of amino acid sequences in one-letter codes. If the amino acid at a particular position of such a polypeptide extension can be several amino acids, that particular position will be the amino acid code X. Unless otherwise described herein, the letter "X" refers to possibly any amino acid. The term (Xn) refers to an extension of a protein sequence consisting of a number n of amino acid residues X, wherein each said X is any amino acid possible, and wherein n is 2, 3, 4, or more. The term (Xm) refers to an extension of a protein sequence consisting of a number m of amino acid residues X, where each said X is any amino acid possible, where m is 2, 3, 4 or more. The term (Xp) refers to an extension of a protein sequence consisting of a number p of amino acid residues X, where each said X is any amino acid possible, where p is 2, 3, 4 or more. The term "[X, no A, G or S]" refers to any amino acid excluding the amino acid residues alanine (A), glycine (G) or serine (S). The term "[X, no F, H, W or Y]" refers to any amino acid excluding the amino acid residues phenylalanine (F), histidine (H), tryptophan (W) and tyrosine Amino acid (Y).
本文所用的用語「核苷酸-糖(nucleotide-sugar)」或「活性糖(activated sugar)」是指單醣的活化形式。活化的單醣之例子包含但不限於UDP-半乳糖(UDP-Gal)、UDP-N-乙醯葡萄糖胺(UDP-GlcNAc)、UDP-N-乙醯半乳糖胺(UDP-GalNAc)、UDP-N-乙醯甘露糖胺(UDP-ManNAc)、GDP-岩藻糖(GDP-Fuc)、GDP-甘露糖(GDP-Man)、UDP-葡萄糖(UDP-Glc)、UDP-2-乙醯胺基-2,6-雙去氧--L阿拉伯-4-己酮醣(UDP-2-acetamido-2,6-dideoxy--L-arabino-4-hexulose)、UDP-2-乙醯胺基-2,6-雙去氧--L-來蘇-4-己酮醣、UDP-N-乙醯基-L-鼠李糖胺(UDP-L-RhaNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-甘露糖)、dTDP-N-乙醯岩藻糖胺(dTDP-N-acetylfucosamine)、UDP-N-乙醯岩藻糖胺(UDP-L-FucNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-半乳糖)、UDP-N-乙醯基-L-肺炎糖胺(UDP-N-acetyl-L-pneumosamine)(UDP-L-PneNAC或UDP-2-乙醯胺基-2,6-雙去氧-L-塔羅糖(UDP-2-acetamido-2,6-dideoxy-L-talose))、UDP-N-乙醯胞壁酸(UDP-N-acetylmuramic acid)、UDP-N-乙醯基-L-奎諾糖胺(UDP-N-acetyl-L-quinovosamine)(UDP-L-QuiNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-葡萄糖)、GDP-L-異鼠李糖(GDP-L-quinovose)、CMP-N-乙醯基神經胺酸(CMP-N-acetylneuraminic acid)(CMP-Neu5Ac)、CMP-N-乙醇醯神經胺酸(CMP-N-glycolylneuraminic acid)(CMP-Neu5Gc)、CMP-Neu4Ac、CMP-Neu5Ac9N 3、CMP-Neu4,5Ac 2、CMP-Neu5,7Ac 2、CMP-Neu5,9Ac 2、CMP-Neu5,7(8,9)Ac 2、UDP-葡萄糖醛酸鹽(UDP-glucuronate)、UDP-半乳糖醛酸鹽(UDP-galacturonate)、GDP-鼠李糖或UDP-木糖。核苷酸-糖作為醣化反應中的醣苷基供給者。這些反應藉由稱為醣基轉移酶的一組酶進行催化。 The term "nucleotide-sugar" or "activated sugar" as used herein refers to the activated form of a monosaccharide. Examples of activated monosaccharides include, but are not limited to, UDP-galactose (UDP-Gal), UDP-N-acetylglucosamine (UDP-GlcNAc), UDP-N-acetylgalactosamine (UDP-GalNAc), UDP -N-Acetylmannosamine (UDP-ManNAc), GDP-Fucose (GDP-Fuc), GDP-Mannose (GDP-Man), UDP-Glucose (UDP-Glc), UDP-2-Acetyl Amino-2,6-dideoxy--L-arabino-4-hexulose (UDP-2-acetamido-2,6-dideoxy--L-arabino-4-hexulose), UDP-2-acetamide Alkyl-2,6-dideoxy--L-lyxo-4-hexulose, UDP-N-acetyl-L-rhamnosamine (UDP-L-RhaNAc or UDP-2-acetamide yl-2,6-dideoxy-L-mannose), dTDP-N-acetylfucosamine (dTDP-N-acetylfucosamine), UDP-N-acetylfucosamine (UDP-L-FucNAc or UDP-2-acetylamino-2,6-dideoxy-L-galactose), UDP-N-acetyl-L-pneumosamine (UDP-N-acetyl-L-pneumosamine) (UDP -L-PneNAC or UDP-2-acetamido-2,6-dideoxy-L-talose (UDP-2-acetamido-2,6-dideoxy-L-talose), UDP-N- UDP-N-acetylmuramic acid, UDP-N-acetyl-L-quinosamine (UDP-L-QuiNAc or UDP-2- Acetylamino-2,6-dideoxy-L-glucose), GDP-L-isorhamnose (GDP-L-quinovose), CMP-N-acetylneuraminic acid (CMP-N-acetylneuraminic) acid) (CMP-Neu5Ac), CMP-N-glycolylneuraminic acid (CMP-Neu5Gc), CMP-Neu4Ac, CMP-Neu5Ac9N 3 , CMP-Neu4,5Ac 2 , CMP-Neu5 ,7Ac 2 , CMP-Neu5,9Ac 2 , CMP-Neu5,7(8,9)Ac 2 , UDP-glucuronate, UDP-galacturonate, GDP -Rhamnose or UDP-xylose. Nucleotide-sugars serve as glycoside donors in glycation reactions. These reactions are catalyzed by a group of enzymes called glycosyltransferases.
本發明所用的用語「N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶(N-acetylglucosamine b-1,3-galactosyltransferase)」、「N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶(N-acetylglucosamine beta-1,3-galactosyltransferase)」、「N-乙醯葡萄糖胺β 1,3 半乳糖基轉移酶(N-acetylglucosamine beta 1,3 galactosyltransferase)」、「N-乙醯葡萄糖胺 β-1,3-半乳糖基轉移酶(N-acetylglucosamine β-1,3-galactosyltransferase)」、「N-乙醯葡萄糖胺 β 1,3 半乳糖基轉移酶(N-acetylglucosamine β 1,3 galactosyltransferase)」可互換使用,且是指催化將來自供給者UDP-半乳糖的半乳糖以β-1,3醣苷鍵結轉移至接受者N-乙醯葡萄糖胺之半乳糖基轉移酶。編碼「N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶」或任何上述用語的多核苷酸是指編碼如此的醣基轉移酶之多核苷酸,該醣基轉移酶催化以將來自供給者UDP-半乳糖的半乳糖以β-1,3醣苷鍵結轉移至接受者N-乙醯葡萄糖胺。Terms used in the present invention "N-acetylglucosamine b-1,3-galactosyltransferase (N-acetylglucosamine b-1,3-galactosyltransferase)", "N-acetylglucosamine beta-1,3- N-acetylglucosamine beta-1,3-galactosyltransferase, "N-acetylglucosamine beta 1,3 galactosyltransferase", "N-acetylglucosamine beta 1,3 galactosyltransferase" N-acetylglucosamine β-1,3-galactosyltransferase, N-acetylglucosamine β-1,3-galactosyltransferase 1,3 galactosyltransferase)" is used interchangeably and refers to a galactosyltransferase that catalyzes the transfer of galactose from a donor UDP-galactose to a recipient N-acetylglucosamine via a β-1,3 glycosidic bond . A polynucleotide encoding "N-acetylglucosamine b-1,3-galactosyltransferase" or any of the above terms refers to a polynucleotide encoding a glycosyltransferase that catalyzes the conversion of Galactose from the donor UDP-galactose is transferred to the recipient N-acetylglucosamine with a β-1,3 glycosidic linkage.
本發明所用的用語「N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶(N-acetylglucosamine b-1,4-galactosyltransferase)」、「N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶(N-acetylglucosamine beta-1,4-galactosyltransferase)」、「N-乙醯葡萄糖胺β 1,4 半乳糖基轉移酶(N-acetylglucosamine beta 1,4 galactosyltransferase)」、「N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶(N-acetylglucosamine β-1,4-galactosyltransferase)」、「N-乙醯葡萄糖胺β 1,4 半乳糖基轉移酶(N-acetylglucosamine β 1,4 galactosyltransferase)」可互換使用,且是指催化將來自供給者UDP-半乳糖的半乳糖以β-1,4醣苷鍵結轉移至接受者N-乙醯葡萄糖胺之半乳糖基轉移酶。編碼「N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶」或任何上述用語的多核苷酸是指編碼如此的醣基轉移酶之多核苷酸,該醣基轉移酶催化以將來自供給者UDP-半乳糖的半乳糖以β-1,4醣苷鍵結轉移至接受者N-乙醯葡萄糖胺。Terms used in the present invention "N-acetylglucosamine b-1,4-galactosyltransferase (N-acetylglucosamine b-1,4-galactosyltransferase)", "N-acetylglucosamine beta-1,4- N-acetylglucosamine beta-1,4-galactosyltransferase, N-acetylglucosamine beta 1,4 galactosyltransferase, N-acetylglucosamine beta 1,4 galactosyltransferase N-acetylglucosamine β-1,4-galactosyltransferase, N-acetylglucosamine β-1,4-galactosyltransferase 1,4 galactosyltransferase)" is used interchangeably and refers to a galactosyltransferase that catalyzes the transfer of galactose from a donor UDP-galactose to a recipient N-acetylglucosamine via a β-1,4 glycosidic bond . A polynucleotide encoding "N-acetylglucosamine b-1,4-galactosyltransferase" or any of the above terms refers to a polynucleotide encoding a glycosyltransferase that catalyzes the conversion of Galactose from the donor UDP-galactose is transferred to the recipient N-acetylglucosamine with a β-1,4 glycosidic linkage.
本發明所用的用語「N-乙醯葡萄糖胺-6-磷酸轉移酶(glucosamine 6-phosphate N-acetyltransferase)」、「葡萄糖胺-磷酸鹽N-乙醯轉移酶(glucosamine-phosphate N-acetyltransferase)」、「GNA」、「GNA1」、「葡萄糖胺-6P N-乙醯轉移酶(glucosamine-6P N-acetyltransferase)」、「GlcN6P N-乙醯轉移酶」可互換使用,且是指催化以將來自乙醯輔酶A(acetyl-CoA)的乙醯基轉移至葡萄糖胺-6-磷酸鹽中的一級胺,產生N-乙醯-D-葡萄糖胺-6-磷酸鹽(亦稱為GlcNAc-6P)之酶。編碼「N-乙醯葡萄糖胺-6-磷酸轉移酶」或任何上述用語的多核苷酸是指編碼如此的酶之多核苷酸,該酶催化以將來自乙醯輔酶A的乙醯基轉移至葡萄糖胺-6-磷酸鹽中的一級胺,產生N-乙醯-D-葡萄糖胺-6-磷酸鹽。Terms used in the present invention "N-acetylglucosamine-6-phosphate transferase (glucosamine 6-phosphate N-acetyltransferase)", "glucosamine-phosphate N-acetyltransferase (glucosamine-phosphate N-acetyltransferase)" , "GNA", "GNA1", "glucosamine-6P N-acetyltransferase", "GlcN6P N-acetyltransferase" are used interchangeably and refer to the The acetyl group of acetyl-CoA (acetyl-CoA) is transferred to the primary amine in glucosamine-6-phosphate, resulting in N-acetyl-D-glucosamine-6-phosphate (also known as GlcNAc-6P) the enzyme. A polynucleotide encoding "N-acetylglucosamine-6-phosphotransferase" or any of the above terms refers to a polynucleotide encoding an enzyme that catalyzes the transfer of an acetyl group from acetyl-CoA to Primary amine in glucosamine-6-phosphate, yielding N-acetyl-D-glucosamine-6-phosphate.
本發明所用的用語「果糖-6-磷酸轉胺酶(fructose-6-phosphate aminotransferase)」、「麩醯胺--果糖-6-磷酸-轉胺酶(glutamine--fructose-6-phosphate-aminotransferase)」、「麩醯胺--果糖-6-磷酸轉胺酶(glutamine--fructose-6-phosphate aminotransferase)」、「L-麩醯胺—D-果糖-6-磷酸轉胺酶(L-glutamine—D-fructose-6-phosphate aminotransferase)」、「glmS」、「glms」、「glmS*54」可互換使用,且是指催化以利用麩醯胺作為氮源而將果糖-6-磷酸鹽轉換成葡萄糖胺-6-磷酸鹽之酶。編碼「果糖-6-磷酸轉胺酶」或任何上述用語的多核苷酸是指編碼如此的酶之多核苷酸,該酶催化以利用麩醯胺作為氮源而將果糖-6-磷酸鹽轉換成葡萄糖胺-6-磷酸鹽。The terms used in the present invention "fructose-6-phosphate aminotransferase", "glutamine--fructose-6-phosphate-aminotransferase" )", "glutamine--fructose-6-phosphate aminotransferase", "L-glutamine-D-fructose-6-phosphate aminotransferase (L- glutamine—D-fructose-6-phosphate aminotransferase)”, “glmS”, “glms”, and “glmS*54” are used interchangeably and refer to the catalysis of the conversion of fructose-6-phosphate by glutamine as a nitrogen source The enzyme that converts to glucosamine-6-phosphate. A polynucleotide encoding "fructose-6-phosphate transaminase" or any of the above terms refers to a polynucleotide encoding an enzyme that catalyzes the conversion of fructose-6-phosphate using glutamine as a nitrogen source into glucosamine-6-phosphate.
本文所用的用語「生物產品(bioproduct)是指在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣,其是以生物方式合成,即藉由微生物合成、細胞合成。The term "bioproduct" as used herein refers to a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end, which is biosynthesized, ie, by microbial synthesis, cellular synthesis.
本文所用的用語「雙醣(disaccharide)」是指由兩個單醣單元組成的醣類。本文所用的用語「寡醣(Oligosaccharide )」,按照本領域的一般理解,是指含有少量(通常為三至二十個)單糖,即單醣的醣類聚合物。本文所用的單醣是還原糖。雙醣及寡醣可以是還原糖或非還原糖,並且具有還原端和非還原端。還原糖是能夠還原另一種化合物並且本身被氧化(即,糖的羰基被氧化成羧基)的任何糖。本發明中使用的用語「糖的還原端(reducing end of a saccharide)」是指醣中可用於還原另一種化合物的自由異構碳。The term "disaccharide" as used herein refers to a saccharide consisting of two monosaccharide units. The term "Oligosaccharide" as used herein, as generally understood in the art, refers to a saccharide polymer containing a small amount (usually three to twenty) of a monosaccharide, ie, a monosaccharide. Monosaccharides as used herein are reducing sugars. Disaccharides and oligosaccharides can be reducing or non-reducing sugars and have reducing and non-reducing ends. A reducing sugar is any sugar that is capable of reducing another compound and is itself oxidized (ie, the carbonyl group of the sugar is oxidized to a carboxyl group). The term "reducing end of a saccharide" as used in the present invention refers to a free isomeric carbon in a sugar that can be used to reduce another compound.
本文所用的用語「單醣(monosaccharide)」是指不能藉由水解分解為更簡單的糖,屬於醛糖或酮糖,每個分子中含有一個或多個羥基的糖。單醣是只含有一種單醣的醣類。單醣的例子包括己糖、D-哌喃葡萄糖(D-Glucopyranose)、D-半乳糖呋喃糖(D-galactofuranose)、D-半乳糖哌喃糖(D-galactopyranose)、L-半乳糖哌喃糖、D-哌喃甘露糖(Mannopyranose)、D-哌喃阿洛糖(D-Allopyranose)、D-哌喃古洛糖(D-Gulopyranose)、D-艾杜哌喃糖(D-idopyranose)、D-塔羅哌喃糖(D-talopyranose)、D-核呋喃糖(D-ribofuranose)、D-核哌喃糖(D-ribopyranose)、D-阿拉伯呋喃糖(D-arabinofuranose)、D-阿拉伯哌喃糖(D-arabinopyranose)、L-阿拉伯呋喃糖、L-阿拉伯哌喃糖、D-木哌喃糖(D-xylopyranose)、D-來蘇哌喃糖(D-lyxopyranose)、D-赤藻呋喃糖(D-erythrofuranose)、D-蘇呋喃糖(D-threofuranose)、庚糖(heptose)、L-甘油-D-甘露-哌喃庚糖(L-glycero-D-manno-Heptopyranose,LDmanHep)、D-甘油-D-甘露-庚哌喃糖(D-glycero-D-manno-Heptopyranose,DDmanHep)、6-去氧-L-阿卓哌喃糖(6-Deoxy-L-altropyranose)、6-去氧--D-哌喃古洛糖、6-去氧-D-塔羅哌喃糖、6-去氧-D-半乳糖哌喃糖、6-去氧-L-半乳糖哌喃糖、6-去氧-D-哌喃甘露糖、6-去氧-L-哌喃甘露糖、6-去氧-D-哌喃葡萄糖、2-去氧-D-阿拉伯-己糖(2-Deoxy-D-arabino-hexose)、2-去氧-D-赤藻-戊糖(2-Deoxy-D-erythro-pentose)、2,6-雙去氧-D-阿拉伯-己哌喃糖(2,6-Dideoxy-D-arabino-hexopyranose)、3,6-雙去氧-D-阿拉伯-己哌喃糖、3,6-雙去氧-L-阿拉伯-己哌喃糖、3,6-雙去氧-D-木糖-己哌喃糖(3,6-Dideoxy-D-xylo-hexopyranose)、3,6-雙去氧-D-核糖-己哌喃糖(3,6-Dideoxy-D-ribo-hexopyranose)、2,6-雙去氧-D-核糖-己哌喃糖、3,6-雙去氧-L-木糖-己哌喃糖、2-胺基-2-去氧-D-哌喃葡萄糖、2-胺基-2-去氧-D-半乳糖哌喃糖、2-胺基-2-去氧-D-哌喃甘露糖、2-胺基-2-去氧-D-哌喃阿洛糖、2-胺基-2-去氧-L-阿卓哌喃糖、2-胺基-2-去氧-D-哌喃古洛糖、2-胺基-2-去氧-L-艾杜哌喃糖、2-胺基-2-去氧-D-塔羅哌喃糖、2-乙醯胺基-2-去氧-D-哌喃葡萄糖、2-乙醯胺基-2-去氧-D-半乳糖哌喃糖、2-乙醯胺基-2-去氧-D-哌喃甘露糖、2-乙醯胺基-2-去氧-D-哌喃阿洛糖、2-乙醯胺基-2-去氧-L-阿卓哌喃糖、2-乙醯胺基-2-去氧-D-哌喃古洛糖、2-乙醯胺基-2-去氧-L-艾杜哌喃糖、2-乙醯胺基-2-去氧-D-塔羅哌喃糖、2-乙醯胺基-2,6-雙去氧-D-半乳糖哌喃糖、2-乙醯胺基-2,6-雙去氧-L-半乳糖哌喃糖、2-乙醯胺基-2,6-雙去氧-L-哌喃甘露糖、2-乙醯胺基-2,6-雙去氧-D-哌喃葡萄糖、2-乙醯胺基-2,6-雙去氧-L-阿卓哌喃糖、2-乙醯胺基-2,6-雙去氧-D-塔羅哌喃糖、D-哌喃葡糖醛酸(D-glucopyranuronic acid)、D-哌喃半乳糖醛酸(D-Galactopyranuronic acid)、D-哌喃甘露糖醛酸(D-Mannopyranuronic acid)、D-哌喃阿洛糖醛酸(D-Allopyranuronic acid)、L-哌喃阿卓糖醛酸(L-Altropyranuronic acid)、D-哌喃古洛糖醛酸(D-Gulopyranuronic acid)、L-哌喃古洛糖醛酸、L-哌喃艾杜糖醛酸(L-Idopyranuronic acid)、D-哌喃塔羅糖醛酸(D-Talopyranuronic acid)、唾液酸(sialic acid)、5-胺基-3,5-雙去氧-D-甘油-D-半乳糖-壬-2-酮糖酸(5-Amino-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid)、5-乙醯胺基-3,5-雙去氧-D-甘油-D-半乳糖-壬-2-酮糖酸、5-乙醇醯胺基-3,5-雙去氧-D-甘油-D-半乳糖-壬-2-酮糖酸(5-Glycolylamido-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid)、赤藻糖醇(erythritol)、阿拉伯糖醇(Arabinitol)、木糖醇(Xylitol)、核糖醇(Ribitol)、山梨醇(Glucitol)、半乳糖醇(Galactitol)、甘露醇(Mannitol)、D-核糖-己-2-酮哌喃醣(D-ribo-Hex-2-ulopyranose)、D-阿拉伯-己-2-酮呋喃糖(D-arabino-Hex-2-ulofuranose)(D-果呋喃糖(D-fructofuranose))、D-阿拉伯-己-2-酮哌喃醣(D-arabino-Hex-2-ulopyranose)、L-木糖-己-2-酮哌喃醣(L-xylo-Hex-2-ulopyranose)、D-木糖-己-2-酮哌喃醣(D-lyxo-Hex-2-ulopyranose)、D-蘇-戊-2-酮哌喃醣(D-threo-Pent-2-ulopyranose)、D-阿卓糖-庚-2-酮哌喃醣(D-altro-Hept-2-ulopyranose)、3-C-(羥基甲基)-D-赤藻呋喃糖(3-C-(Hydroxymethyl)-D-erythofuranose)、2,4,6-三去氧-2,4-二胺基-D-哌喃葡萄糖(2,4,6-Trideoxy-2,4-diamino-D-glucopyranose)、6-去氧-3-O-甲基-D-葡萄糖、3-O-甲基-D-鼠李糖、2,6-雙去氧-3-甲基-D-核糖-己糖、2-胺基-3-O-[(R)-1-羧乙基]-2-去氧-D-哌喃葡萄糖、2-乙醯胺基-3-O-[(R)-羧乙基]-2-去氧-D-哌喃葡萄糖、2-乙醇醯胺基-3-O-[(R)-1-羧乙基]-2-去氧-D-哌喃葡萄糖、3-去氧-D-木糖-庚-2-酮哌喃糖酸(3-Deoxy-D-lyxo-hept-2-ulopyranosaric acid)、3-去氧-D-甘露-辛-2-酮哌喃糖酸(3-Deoxy-D-manno-oct-2-ulopyranosonic acid)、3-去氧-D-甘油-D-半乳糖-壬-2-酮哌喃糖酸(3-Deoxy-D-glycero-D-galacto-non-2-ulopyranosonic acid)、5,7-二胺基-3,5,7,9-四去氧-L-甘油-L-甘露-壬-2-酮哌喃糖酸(5,7-Diamino-3,5,7,9-tetradeoxy-L-glycero-L-manno-non-2-ulopyranosonic acid )、5,7-二胺基-3,5,7,9-四去氧-L-甘油o-L-阿卓糖-壬-2-酮哌喃糖酸(5,7-Diamino-3,5,7,9-tetradeoxy-L-glycero-L-altro-non-2-ulopyranosonic acid)、5,7-二胺基-3,5,7,9-四去氧-D-甘油-D-半乳糖-壬-2-酮哌喃糖酸(5,7-Diamino-3,5,7,9-tetradeoxy-D-glycero-D-galacto-non-2-ulopyranosonic acid)、5,7-二胺基-3,5,7,9-四去氧-D-甘油-D-塔羅-壬-2-酮哌喃糖酸(5,7-Diamino-3,5,7,9-tetradeoxy-D-glycero-D-talo-non-2-ulopyranosonic acid)、葡萄糖、半乳糖、N-乙醯葡萄糖胺、葡萄糖胺、甘露糖、木糖、N-乙醯甘露糖胺、N-乙醯基神經胺酸、N-乙醇醯神經胺酸、N-乙醯半乳糖胺、半乳糖胺、岩藻糖、鼠李糖、葡萄糖醛酸、葡萄糖酸、果糖及多元醇。As used herein, the term "monosaccharide" refers to a sugar that cannot be broken down by hydrolysis into simpler sugars, either aldose or ketose, containing one or more hydroxyl groups per molecule. Monosaccharides are sugars that contain only one type of monosaccharide. Examples of monosaccharides include hexose, D-Glucopyranose, D-galactofuranose, D-galactopyranose, L-galactofuranose Sugar, D-Mannopyranose, D-Allopyranose, D-Gulopyranose, D-idopyranose , D-talopyranose (D-talopyranose), D-ribofuranose (D-ribofuranose), D-ribopyranose (D-ribopyranose), D-arabinofuranose (D-arabinofuranose), D- D-arabinopyranose, L-arabinofuranose, L-arabinopyranose, D-xylopyranose, D-lyxopyranose, D- D-erythrofuranose, D-threofuranose, heptose, L-glycero-D-manno-Heptopyranose, LDmanHep), D-glycero-D-manno-heptopyranose (D-glycero-D-manno-Heptopyranose, DDmanHep), 6-Deoxy-L-altropyranose (6-Deoxy-L-altropyranose) , 6-deoxy--D-gulpyranose, 6-deoxy-D-talopyranose, 6-deoxy-D-galactopyranose, 6-deoxy-L-galactose 6-Deoxy-D-mannanose, 6-deoxy-L-mannanose, 6-deoxy-D-glucopyranose, 2-deoxy-D-arabino-hexose (2-Deoxy-D-arabino-hexose), 2-Deoxy-D-erythro-pentose (2-Deoxy-D-erythro-pentose), 2,6-dideoxy-D-arabino-hexose Ranose (2,6-Dideoxy-D-arabino-hexopyranose), 3,6-dideoxy-D-arabino-hexopyranose, 3,6-dideoxy-L-arabino-hexopyranose, 3,6-Dideoxy-D-xylose-hexopyranose (3,6-Dideoxy-D-xylo-hexopyranose), 3,6-dideoxy-D-ribose-hexopyranose (3,6-Dideoxy-D-ribose-hexopyranose) 6-Dideoxy-D-ribo-hexopyranose), 2,6-dideoxy-D-ribose-hexopyranose, 3,6-dideoxy-L-xylose- Hexanose, 2-amino-2-deoxy-D-glucopyranose, 2-amino-2-deoxy-D-galactopyranose, 2-amino-2-deoxy-D -Mannphenanose, 2-amino-2-deoxy-D-allofanose, 2-amino-2-deoxy-L-aldropyranose, 2-amino-2-des Oxy-D-gulpyranose, 2-amino-2-deoxy-L-iduropyranose, 2-amino-2-deoxy-D-talopyranose, 2-acetonitrile Amino-2-deoxy-D-glucopyranose, 2-acetamido-2-deoxy-D-galactopyranose, 2-acetamido-2-deoxy-D-pyranose Mannose, 2-acetamido-2-deoxy-D-allopyranosyl, 2-acetamido-2-deoxy-L-aldropyranose, 2-acetamido- 2-Deoxy-D-gulpyranose, 2-acetamido-2-deoxy-L-iduranose, 2-acetamido-2-deoxy-D-talopeptide Ranose, 2-Acetamino-2,6-dideoxy-D-galactopyranose, 2-Acetamino-2,6-dideoxy-L-galactopyranose, 2 -Acetamido-2,6-dideoxy-L-mannanose, 2-acetamido-2,6-dideoxy-D-glucopyranose, 2-acetamido-2 ,6-dideoxy-L-aldropyranose, 2-acetamido-2,6-dideoxy-D-talopyranose, D-glucopyranuronic acid (D-glucopyranuronic acid) acid), D-Galactopyranuronic acid, D-Mannopyranuronic acid, D-Allopyranuronic acid, L -L-Altropyranuronic acid, D-Gulopyranuronic acid, L-Gulopyranuronic acid, L-Iduronic acid (L-Idopyranuronic acid), D-Talopyranuronic acid (D-Talopyranuronic acid), sialic acid, 5-amino-3,5-dideoxy-D-glycerol-D-half Lactose-nonan-2-ketonic acid (5-Amino-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid), 5-acetamido-3,5-dideoxy -D-glycerol-D-galactose-nonan-2-ketonic acid, 5-ethanolamido-3,5-dideoxy-D-glycerol-D-galactose-nonan-2-ketonic acid ( 5-Glycolylamido-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid), erythritol ), Arabinitol, Xylitol, Ribitol, Glucitol, Galactitol, Mannitol, D-ribose-hex-2-one D-ribo-Hex-2-ulopyranose, D-arabino-Hex-2-ulofuranose (D-fructofuranose), D-arabino-hex-2-ketopyranose (D-arabino-Hex-2-ulopyranose), L-xylo-hex-2-ketopyranose (L-xylo-Hex-2-ulopyranose), D - Xylose-Hex-2-ketopyranose (D-lyxo-Hex-2-ulopyranose), D-threo-Pent-2-ketopyranose (D-threo-Pent-2-ulopyranose), D- D-altro-Hept-2-ulopyranose, 3-C-(Hydroxymethyl)-D-erythrofuranose (3-C-(Hydroxymethyl)-D -erythofuranose), 2,4,6-Trideoxy-2,4-diamino-D-glucopyranose (2,4,6-Trideoxy-2,4-diamino-D-glucopyranose), 6-Deoxy Oxy-3-O-methyl-D-glucose, 3-O-methyl-D-rhamnose, 2,6-dideoxy-3-methyl-D-ribose-hexose, 2-amino -3-O-[(R)-1-Carboxyethyl]-2-deoxy-D-glucopyranose, 2-acetamido-3-O-[(R)-carboxyethyl]-2 -Deoxy-D-glucopyranose, 2-ethanolamido-3-O-[(R)-1-carboxyethyl]-2-deoxy-D-glucopyranose, 3-deoxy-D -Xylose-hept-2-ketopyranoic acid (3-Deoxy-D-lyxo-hept-2-ulopyranosaric acid), 3-deoxy-D-manno-oct-2-ketopyranoic acid (3 -Deoxy-D-manno-oct-2-ulopyranosonic acid), 3-Deoxy-D-glycero-D-galactose-non-2-ketopyranosic acid (3-Deoxy-D-glycero-D-galacto -non-2-ulopyranosonic acid), 5,7-diamino-3,5,7,9-tetradeoxy-L-glycerol-L-manno-non-2-ketopyranoic acid (5,7 -Diamino-3,5,7,9-tetradeoxy-L-glycero-L-manno-non-2-ulopy ranosonic acid), 5,7-diamino-3,5,7,9-tetradeoxy-L-glycerol o-L-altrose-nonan-2-ketopyranoic acid (5,7-Diamino-3 ,5,7,9-tetradeoxy-L-glycero-L-altro-non-2-ulopyranosonic acid), 5,7-diamino-3,5,7,9-tetradeoxy-D-glycerol-D -Galactose-nonan-2-ketopyranosonic acid (5,7-Diamino-3,5,7,9-tetradeoxy-D-glycero-D-galacto-non-2-ulopyranosonic acid), 5,7- Diamino-3,5,7,9-tetradeoxy-D-glycerol-D-tarot-non-2-ketopyranoic acid (5,7-Diamino-3,5,7,9-tetradeoxy -D-glycero-D-talo-non-2-ulopyranosonic acid), glucose, galactose, N-acetylglucosamine, glucosamine, mannose, xylose, N-acetylmannosamine, N-acetylglucosamine N-glycolyl neuraminic acid, N-glycolyl neuraminic acid, N-acetylgalactosamine, galactosamine, fucose, rhamnose, glucuronic acid, gluconic acid, fructose and polyols.
用語「多元醇」是指含有多個羥基的醇。例如,甘油、山梨醇或甘露醇。The term "polyol" refers to an alcohol containing multiple hydroxyl groups. For example, glycerol, sorbitol or mannitol.
用語「在還原端具有N-乙醯葡萄糖胺單元的雙醣」包含但不限於產物Gal-b1,3-GlcNAc或Gal-b1,4-GlcNAc,其中半乳糖分別以β-1,3-鍵結或β-1,4-鍵結的方式與N-乙醯葡萄糖胺連接,且其中N-乙醯葡萄糖胺位於雙醣的還原端。The term "disaccharide having an N-acetylglucosamine unit at the reducing end" includes, but is not limited to, the products Gal-b1,3-GlcNAc or Gal-b1,4-GlcNAc, wherein galactose is bound by a β-1,3-bond, respectively It is linked to N-acetylglucosamine by means of a knot or β-1,4-bond, and wherein N-acetylglucosamine is located at the reducing end of the disaccharide.
用語「Gal-b1,3-GlcNAc」、「Gal-beta-1,3-GlcNAc」、「Gal-β1,3-GlcNAc」、「Galb1,3GlcNAc」、「Galβ1,3GlcNAc」、「lacto-N-biose」、「LNB」、「LacNAc type I」、「type 1 LacNAc」、「LacNAc (i)」可互換使用,且是指雙醣,其中半乳糖以β-1,3-鍵結的方式與N-乙醯葡萄糖胺連接,且其中N-乙醯葡萄糖胺位於雙醣的還原端。Terms "Gal-b1,3-GlcNAc", "Gal-beta-1,3-GlcNAc", "Gal-β1,3-GlcNAc", "Galb1,3GlcNAc", "Galβ1,3GlcNAc", "lacto-N- biose, "LNB", "LacNAc type I", "type 1 LacNAc", "LacNAc (i)" are used interchangeably and refer to a disaccharide in which galactose is β-1,3-linked to N-acetylglucosamine is linked and wherein N-acetylglucosamine is located at the reducing end of the disaccharide.
用語「Gal-b1,4-GlcNAc」、「Gal-beta-1,4-GlcNAc」、「Gal-β1,4-GlcNAc」、「Galb1,4GlcNAc」、「Galβ1,4GlcNAc」、「N-乙醯乳糖胺」、「LacNAc」、「LacNAc type II」、「type 2 LacNAc」、「LacNAc (ii)」可互換使用,且是指雙醣,其中半乳糖以β-1,4-鍵結的方式與N-乙醯葡萄糖胺連接,且其中N-乙醯葡萄糖胺位於雙醣的還原端。Terms "Gal-b1,4-GlcNAc", "Gal-beta-1,4-GlcNAc", "Gal-β1,4-GlcNAc", "Galb1,4GlcNAc", "Galβ1,4GlcNAc", "N-acetylene" Lactosamine, "LacNAc", "LacNAc type II", "type 2 LacNAc", "LacNAc (ii)" are used interchangeably and refer to a disaccharide in which galactose is β-1,4-bonded Linked to N-acetylglucosamine, and wherein N-acetylglucosamine is located at the reducing end of the disaccharide.
在本發明使用的用語「在還原端具有N-乙醯葡萄糖胺單元的寡醣」是指由三至二十個單醣單位組成的寡醣,其中N-乙醯葡萄糖胺存在於寡醣的還原端。在本發明使用的寡醣可為線性結構或可包括分支。兩個糖單元之間的鍵結(如,醣苷鍵結、半乳糖苷鍵結、葡萄糖苷鍵結等)可以表示為,例如,1,4、1->4或(1-4),在此可互換使用。例如,用語「Gal-b1,4-Glc」、「β-Gal-(1->4)-Glc」、「Galbeta1-4-Glc」及「Gal-b(1-4)-Glc」具有相同的含義,即β-糖苷鍵將半乳糖(Gal)的碳1與葡萄糖(Glc)的碳4連接。每個單醣都可為環狀形式(如,呋喃糖的哌喃醣形式)。單個單醣單元之間的鍵結可以包括α1->2、α1->3、α1->4、α1->6、α2->1、α2->3、α2->4、α2->6、β1->2、β1->3、β1->4、β1->6、β2->1、β2->3、β2->4及β2->6。寡醣可以同時含有α-和β-糖苷鍵或可以只含有β-糖苷鍵。本發明中使用的寡醣可以根據通式1定義: 該寡醣由以下以α或β糖苷鍵鍵結的單醣組成,其中B為N-乙醯葡萄糖胺,且其中A、V、W、X、Y及/或Z不存在,或為半乳糖、葡萄糖、岩藻糖、甘露糖、木糖、葡萄糖醛酸、半乳糖醛酸、艾杜糖醛酸、N-乙醯基神經胺酸、N-乙醇醯神經胺酸、葡萄糖胺、N-乙醯半乳糖胺、N-乙醯甘露糖胺、N-乙醯葡萄糖胺及/或由通式2定義的寡醣結構: 其中B是N-乙醯葡萄糖胺,且其中A、V、W、X、Y及/或Z不存在,或為半乳糖、葡萄糖、岩藻糖、甘露糖、木糖、葡萄糖醛酸、半乳糖醛酸、艾杜糖醛酸、N-乙醯基神經胺酸、N-乙醇醯神經胺酸、葡萄糖胺、N-乙醯半乳糖胺、N-乙醯甘露糖胺或N-乙醯葡萄糖胺;且其中,在通式1和通式2中,m是3且可選地v是4,或者m是4且可選地v是3,並且其中p是3及/或4,且其中w是6,並且其中如果n>1且p是3,x是3且X不是單醣,並且其中如果n>1且p為4,y是4且Y不是單醣,並且其中z是6,且其中n從1至10。 The term "oligosaccharide having an N-acetylglucosamine unit at the reducing end" used in the present invention refers to an oligosaccharide consisting of three to twenty monosaccharide units, wherein N-acetylglucosamine is present in the oligosaccharide. restore end. Oligosaccharides used in the present invention may be linear in structure or may include branches. The linkage between two sugar units (eg, glycosidic linkage, galactosidic linkage, glucosidic linkage, etc.) can be expressed as, for example, 1,4, 1->4 or (1-4), in This is used interchangeably. For example, the terms "Gal-b1,4-Glc", "β-Gal-(1->4)-Glc", "Galbeta1-4-Glc" and "Gal-b(1-4)-Glc" have the same The meaning of , that the β-glycosidic bond connects carbon 1 of galactose (Gal) to carbon 4 of glucose (Glc). Each monosaccharide can be in a cyclic form (eg, the piperanose form of furanose). The linkages between individual monosaccharide units may include α1->2, α1->3, α1->4, α1->6, α2->1, α2->3, α2->4, α2->6 , β1->2, β1->3, β1->4, β1->6, β2->1, β2->3, β2->4 and β2->6. Oligosaccharides may contain both alpha- and beta-glycosidic linkages or may contain beta-glycosidic linkages only. The oligosaccharides used in the present invention can be defined according to general formula 1: The oligosaccharide consists of the following monosaccharides linked by alpha or beta glycosidic linkages, wherein B is N-acetylglucosamine and wherein A, V, W, X, Y and/or Z are absent, or galactose , glucose, fucose, mannose, xylose, glucuronic acid, galacturonic acid, iduronic acid, N-acetylneuraminic acid, N-glycolylneuraminic acid, glucosamine, N- Acetylgalactosamine, N-acetylmannosamine, N-acetylglucosamine and/or oligosaccharide structures defined by general formula 2: wherein B is N-acetylglucosamine, and wherein A, V, W, X, Y, and/or Z are absent, or galactose, glucose, fucose, mannose, xylose, glucuronic acid, semi- Lacturonic acid, iduronic acid, N-acetylneuraminic acid, N-glycolylneuraminic acid, glucosamine, N-acetylgalactosamine, N-acetylmannosamine or N-acetyl Glucosamine; and wherein, in Formula 1 and Formula 2, m is 3 and optionally v is 4, or m is 4 and optionally v is 3, and wherein p is 3 and/or 4, and where w is 6, and where if n > 1 and p is 3, x is 3 and X is not a monosaccharide, and where if n > 1 and p is 4, y is 4 and Y is not a monosaccharide, and where z is 6 , and where n ranges from 1 to 10.
如本文所使用的「哺乳動物乳寡醣(mammalian milk oligosaccharide)」(MMO)是指寡醣,例如但不限於乳-N-三糖II(lacto-N-triose II)、3-岩藻糖基乳糖(3-fucosyllactose)、2′-岩藻糖基乳糖、6-岩藻糖基乳糖、2’,3-二岩藻糖基乳糖、2’,2-二岩藻糖基乳糖、3,4-二岩藻糖基乳糖、6′-唾液酸乳糖(6′-sialyllactose)、3′-唾液酸乳糖、3,6-二唾液酸乳糖、6,6’-二唾液酸乳糖、8,3-二唾液酸乳糖、3,6-二唾液酸乳-N-四糖(3,6-disialyllacto-N-tetraose)、乳二岩藻四糖(lactodifucotetraose)、乳-N-四糖(lacto-N-tetraose)、乳-N-新四糖(lacto-N-neotetraose)、乳-N-岩藻五糖II(lacto-N-fucopentaose II)、乳-N-岩藻五糖I、乳-N-岩藻五糖III、乳-N-岩藻五糖V、乳-N-岩藻五糖VI、唾液酸乳-N-四糖c(sialyllacto-N-tetraose c)、唾液酸乳-N-四糖b、唾液酸乳-N-四糖a、乳-N-二岩藻六糖I(lacto-N-difucohexaose I)、乳-N-二岩藻六糖II、乳-N-六糖、乳-N-新六糖(lacto-N-neohexaose)、對乳-N-六糖(para-lacto-N-hexaose)、單岩藻糖基單唾液酸乳-N-四糖c(monofucosylmonosialyllacto-N-tetraose c)、單岩藻糖基對乳-N-六糖(monofucosyl para-lacto-N-hexaose)、單岩藻糖基乳-N-六糖III、異構岩藻糖基化乳-N-六糖III(isomeric fucosylated lacto-N-hexaose III)、異構岩藻糖基化乳-N-六糖I、唾液酸乳-N-六糖、唾液酸乳-N-新六糖II、二岩藻糖-對乳-N-六糖、二岩藻糖乳-N-六糖、二岩藻糖乳-N-六糖a、二岩藻糖乳-N-六糖c、岩藻糖基化幾丁聚醣、岩藻糖基化寡醣、中性寡醣及/或唾液酸化寡醣。哺乳動物乳寡醣(MMO)包括存在於哺乳期任何階段的乳中的寡醣,包括人類(即,人乳寡醣或HMO)和哺乳動物的初乳,該哺乳動物包括但不限於牛( Bos Taurus)、羊( Ovis aries)、山羊( Capra aegagrus hircus)、雙峰駱駝( Camelus bactrianus)、馬( Equus ferus caballus)、豬( Sus scropha)、狗( Canis lupus familiaris)、日本棕熊( Ursus arctos yesoensis)、北極熊( Ursus maritimus)、日本黑熊( Ursus thibetanus japonicus)、條紋臭鼬( Mephitis mephitis)、冠海豹( Cystophora cristata)、亞洲象( Elephas maximus)、非洲象( Loxodonta africana)、巨型食蟻獸( Myrmecophaga tridactyla)、真瓶鼻海豚( Tursiops truncates)、北方小鬚鯨( Balaenoptera acutorostrata)、尤金袋鼠( Macropus eugenii)、紅袋鼠( Macropus rufus)、刷尾負鼠( Trichosurus Vulpecula)、無尾熊( Phascolarctos cinereus)、東袋鼬( Dasyurus viverrinus)、鴨嘴獸( Ornithorhynchus anatinus)。人乳寡醣(HMOs)也被稱為同人乳寡醣(human identical milk oligosaccharides),其化學成分與人乳中的人乳寡醣相同,但其藉由生物技術產生的(例如,使用無細胞系統或包括細菌、真菌、酵母、植物、動物或原生動物細胞的細胞和生物體,較佳為基因工程細胞和生物體)。同人乳寡醣在市場上以HiMO的名義販售。 "mammalian milk oligosaccharide" (MMO) as used herein refers to oligosaccharides such as but not limited to lacto-N-triose II, 3-fucose 3-fucosyllactose, 2'-fucosyllactose, 6-fucosyllactose, 2',3-difucosyllactose, 2',2-difucosyllactose, 3 ,4-disialyllactose, 6'-sialyllactose, 3'-sialyllactose, 3,6-disialylactose, 6,6'-disialylactose, 8 ,3-disialyllactoose, 3,6-disialyllacto-N-tetraose (3,6-disialyllacto-N-tetraose), lactodifucotetraose, lactodifucotetraose (lactodifucotetraose) lacto-N-tetraose), lacto-N-neotetraose (lacto-N-neotetraose), lacto-N-fucopentaose II (lacto-N-fucopentaose II), lacto-N-fucopentaose I, Lacto-N-fucopentaose III, lacto-N-fucopentaose V, lacto-N-fucopentose VI, sialyllacto-N-tetraose c (sialyllacto-N-tetraose c), sialic acid Lacto-N-tetrasaccharide b, sialic acid lacto-N-tetrasaccharide a, lacto-N-difucohexaose I (lacto-N-difucohexaose I), lacto-N-difucohexaose II, lacto-N-difucohexaose I N-hexaose, lacto-N-neohexaose, para-lacto-N-hexaose, monofucosyl monosialolacto-N-tetra Sugar c (monofucosylmonosialyllacto-N-tetraose c), monofucosyl para-lacto-N-hexaose (monofucosyl para-lacto-N-hexaose), monofucosyl lacto-N-hexaose III, isomerite fucosylated lacto-N-hexaose III (isomeric fucosylated lacto-N-hexaose III), isofucosylated lacto-N-hexaose I, sialo-N-hexaose, sialo- N-Neohexaose II, Difucose-p-lacto-N-hexaose, Difucoselacto-N-hexaose, Difucoselacto-N-hexaose a, Difucoselacto-N - hexasaccharide c, fucosylated chitosan, fucosylated oligosaccharides, neutral oligosaccharides and/or sialylated oligosaccharides. Mammalian milk oligosaccharides (MMOs) include oligosaccharides present in milk at any stage of the lactation period, including human (ie, human milk oligosaccharides or HMOs) and colostrum of mammals including, but not limited to, bovine ( Bos Taurus ), sheep ( Ovis aries ), goats ( Capra aegagrus hircus ), bactrian camels ( Camelus bactrianus ), horses ( Equus ferus caballus ), pigs ( Sus scropha ), dogs ( Canis lupus familiaris ), Japanese brown bears ( Ursus arctos ) yesoensis ), polar bear ( Ursus maritimus ), Japanese black bear ( Ursus thibetanus japonicus ), striped skunk ( Mephitis mephitis ), hooded seal ( Cystophora cristata ), Asian elephant ( Elephas maximus ), African elephant ( Loxodonta africana ), giant anteater ( Myrmecophaga tridactyla ), bottlenose dolphin ( Tursiops truncates ), northern minke whale ( Balaenoptera acutorostrata ), eugene kangaroo ( Macropus eugenii ), red kangaroo ( Macropus rufus ), brush-tailed possum ( Trichosurus Vulpecula ), koala ( Phascolarctos cinereus ), eastern quoll ( Dasyurus viverrinus ), platypus ( Ornithorhynchus anatinus ). Human milk oligosaccharides (HMOs), also known as human identical milk oligosaccharides, are chemically identical to human milk oligosaccharides in human milk, but are produced by biotechnology (e.g., using cell-free oligosaccharides). systems or cells and organisms including bacterial, fungal, yeast, plant, animal or protozoan cells, preferably genetically engineered cells and organisms). Doujin milk oligosaccharides are sold on the market under the name HiMO.
用語「純化的(purified)」是指實質上或基本上不含干擾生物分子活性成分的材料。對於細胞、醣類、核酸和多肽,用語「純化的」是指實質上或基本上不含通常在材料以其天然狀態存在時伴隨材料的組分的材料。典型地,本發明的純化的醣類、寡醣、蛋白質或核酸是藉由銀染凝膠上的條帶強度或其他測定純度的方法測量的至少約50%、55%、60%、65%、70%、75%、80%或85%純度,通常至少約為90%、91%、92%、93%、94%、95%、96%、97%、98%或99%純度。純度或均一性可藉由本領域已知的許多方法來指示,例如蛋白質或核酸樣品的聚丙烯醯胺凝膠電泳,隨後在染色時視覺化。出於一些目的,需要高解析度,並使用HPLC或類似的純化方法。對於寡醣,可使用例如但不限於薄層色層分析、氣相色層分析、NMR、HPLC、毛細管電泳或質譜的方法來測定純度。The term "purified" refers to material that is substantially or substantially free of interfering biomolecular active ingredients. With respect to cells, carbohydrates, nucleic acids and polypeptides, the term "purified" refers to a material that is substantially or substantially free of components that normally accompany the material as it exists in its native state. Typically, purified carbohydrates, oligosaccharides, proteins or nucleic acids of the invention are at least about 50%, 55%, 60%, 65% measured by band intensity on silver stained gels or other methods of determining purity , 70%, 75%, 80% or 85% pure, usually at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% pure. Purity or homogeneity can be indicated by a number of methods known in the art, such as polyacrylamide gel electrophoresis of protein or nucleic acid samples, followed by visualization upon staining. For some purposes high resolution is required and HPLC or similar purification methods are used. For oligosaccharides, purity can be determined using methods such as, but not limited to, thin layer chromatography, gas chromatography, NMR, HPLC, capillary electrophoresis, or mass spectrometry.
用語「相同(identical)」或「百分比同一性(percent identity)」或「%同一性(% identity)」在兩個或更多個核酸或多肽序列的情形中,是指兩個或更多個序列或子序列,當使用序列比較演算法或目測法測量就最大對應性進行比較和比對時,其是相同的或具有特定百分比的相同的胺基酸殘基或核苷酸。對於序列比較,一個序列作為參照序列,將測試序列與之進行比較。當使用序列比較演算法時,將測試序列和參照序列輸入電腦,必要時指定子序列座標,並指定序列演算法程式參數。然後,序列比較演算法基於指定的程式參數,計算測試序列相對於參照序列的序列同一性百分比。百分比同一性可以藉由參照序列的全長序列總體地計算,從而得到總體的百分比同一性分數。或者,可以在參照序列的部分序列上計算同一性百分比,從而得出局部同一性百分比分數。在局部序列比對中使用參照序列的全長,而得到測試序列與參照序列之間的總體百分比同一性分數。使用不同的演算法確定百分比同一性,例如BLAST和PSI-BLAST(Altschul et al., 1990, J Mol Biol 215:3, 403- 410; Altschul et al., 1997, Nucleic Acids Res 25: 17, 3389-402)、Clustal Omega方法(Sievers et al., 2011, Mol. Syst. Biol. 7:539)、MatGAT方法(Campanella et al., 2003, BMC Bioinformatics, 4:29)或EMBOSS Needle。 The terms "identical" or "percent identity" or "% identity" in the context of two or more nucleic acid or polypeptide sequences refer to two or more Sequences or subsequences that are identical or have a specified percentage of identical amino acid residues or nucleotides when compared and aligned for maximum correspondence using sequence comparison algorithms or visual measurements. For sequence comparison, one sequence acts as a reference sequence to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are entered into a computer, subsequence coordinates are specified if necessary, and sequence algorithm program parameters are specified. The sequence comparison algorithm then calculates the percent sequence identity of the test sequence relative to the reference sequence, based on the specified program parameters. Percent identity can be calculated collectively from the full-length sequence of the reference sequence, resulting in an overall percent identity score. Alternatively, percent identity can be calculated over a partial sequence of a reference sequence, resulting in a partial percent identity score. The full length of the reference sequence is used in the local sequence alignment, resulting in an overall percent identity score between the test sequence and the reference sequence. Percent identity is determined using different algorithms, such as BLAST and PSI-BLAST (Altschul et al. , 1990, J Mol Biol 215:3, 403-410; Altschul et al. , 1997, Nucleic Acids Res 25: 17, 3389 -402), Clustal Omega method (Sievers et al., 2011, Mol. Syst. Biol. 7:539), MatGAT method (Campanella et al., 2003, BMC Bioinformatics, 4:29) or EMBOSS Needle.
BLAST(Basic Local Alignment Search Tool))的比對方法是由美國國家生物技術資訊中心(National Center for Biotechnology Information,NCBI)提供的一種演算法,使用預設參數(default parameters)來比較序列。該程式將核苷酸或蛋白質序列與序列資料庫進行比較,並計算出統計意義。特定位置反覆運算基本局部排列檢索工具(Position-Specific Iterative Basic Local Alignment Search Tool,PSI-BLAST)是從使用蛋白質-蛋白質BLAST(BLASTp)檢測到的高於給定分數閾值的序列的多序列比對中得出特定位置評分矩陣(PSSM)或概況。BLAST方法可用於成對或多序列比對。成對序列比對用於識別可能表明兩個生物序列(蛋白質或核酸)之間功能、結構及/或進化關係的相似區域。BLAST的網路介面可得自:https://blast.ncbi.nlm.nih.gov/Blast.cgi。The BLAST (Basic Local Alignment Search Tool) alignment method is an algorithm provided by the National Center for Biotechnology Information (NCBI), which uses default parameters to compare sequences. The program compares nucleotide or protein sequences to sequence databases and calculates statistical significance. The Position-Specific Iterative Basic Local Alignment Search Tool (PSI-BLAST) is a multiple sequence alignment from sequences detected using protein-protein BLAST (BLASTp) above a given score threshold A Position-Specific Scoring Matrix (PSSM) or profile is derived. The BLAST method can be used for pairwise or multiple sequence alignment. Pairwise sequence alignment is used to identify similar regions that may indicate a functional, structural and/or evolutionary relationship between two biological sequences (protein or nucleic acid). The web interface of BLAST is available at: https://blast.ncbi.nlm.nih.gov/Blast.cgi.
Clustal Omega(Clustal W)是一個多序列比對程式,其使用種子引導樹和HMM輪廓-輪廓(profile-profile)技術以產生三個或更多序列之間的比對。其產生有生物學意義的發散序列(divergent sequences)的多序列比對。Clustal W的網路介面可得自https://www.ebi.ac.uk/Tools/msa/clustalo/。使用Clustal W方法進行多序列比對和計算蛋白質序列的百分比同一性的預設參數是:啟用輸入序列的去比對:FALSE;啟用mbed-like群集引導樹(mbed-like clustering guide-tree):TRUE;啟用mbed-like群集迭代法(mbed-like clustering iteration):TRUE;(結合的引導樹/HMM)迭代法的次數:預設(0);最大引導樹迭代法:預設[-1];最大HMM迭代法:預設[-1];順序:對齊。Clustal Omega (Clustal W) is a multiple sequence alignment program that uses seed-guided trees and HMM profile-profile techniques to generate alignments between three or more sequences. It produces multiple sequence alignments of biologically meaningful divergent sequences. The web interface of Clustal W is available at https://www.ebi.ac.uk/Tools/msa/clustalo/. The preset parameters for performing multiple sequence alignments and calculating percent identity of protein sequences using the Clustal W method are: enable de-alignment of input sequences: FALSE; enable mbed-like clustering guide-tree: TRUE; enable mbed-like clustering iteration: TRUE; (combined bootstrap tree/HMM) number of iterations: preset (0); max bootstrap tree iteration: preset[-1] ; Maximum HMM Iteration: Preset[-1]; Order: Alignment.
矩陣全局比對工具(Matrix Global Alignment Tool,MatGAT)是電腦應用程式,其產生DNA或蛋白質序列的相似性/同一性矩陣,而不需要對資料進行預比對。該程式使用Myers和Miller全局比對演算法執行一系列的成對比對,計算相似性和同一性,然後將結果放在距離矩陣中。使用者可指定哪種類型的比對矩陣(如,BLOSUM50、BLOSUM62和PAM250),以用於那些蛋白質序列檢查。The Matrix Global Alignment Tool (MatGAT) is a computer application that generates a similarity/identity matrix of DNA or protein sequences without pre-aligning the data. The program uses the Myers and Miller global alignment algorithm to perform a series of pairwise alignments, calculate similarity and identity, and then place the results in a distance matrix. The user can specify which type of alignment matrix (eg, BLOSUM50, BLOSUM62, and PAM250) to use for those protein sequence checks.
EMBOSS Needle(https://galaxy-iuc.github.io/emboss-5.0-docs/needle.html)使用Needleman-Wunsch全局排列演算法,在考慮到該些序列的整體長度時,找到兩個序列的最佳排列(包括空位(gap))。藉由動態程式設計方法,探索所有可能的排列並選擇最佳排列,以確保最佳排列。Needleman-Wunsch演算法是一類演算法的成員,其可在mn步驟的順序中計算出最佳分數和排列,(其中'n'和'm'是兩個序列的長度)。空位開放罰分(gap open penalty)(預設10.0)是在產生空位時被扣除的分數。預設值是推定使用對於蛋白質序列的EBLOSUM62矩陣。空位延伸(預設0.5)罰分增加至對於空位中的每一個鹼基或殘基的標準空位罰分。其為長空位的懲罰。EMBOSS Needle (https://galaxy-iuc.github.io/emboss-5.0-docs/needle.html) uses the Needleman-Wunsch global permutation algorithm to find the difference between two sequences when considering the overall length of those sequences Optimal arrangement (including gaps). Through dynamic programming methods, all possible permutations are explored and the best one is selected to ensure the best permutation. The Needleman-Wunsch algorithm is a member of a class of algorithms that compute optimal scores and permutations in a sequence of mn steps, (where 'n' and 'm' are the lengths of the two sequences). The gap open penalty (default 10.0) is the point deducted when a gap is created. The default is to putatively use the EBLOSUM62 matrix for protein sequences. The gap extension (default 0.5) penalty is added to the standard gap penalty for each base or residue in the gap. It's a penalty for long vacancies.
如本文所用,具有胺基酸序列與參照多肽序列的全長序列具有至少80%的序列同一性的多肽,應理解為該序列具有80 %、81 %、82 %、83 %、84 %、85 %、86 %、87 %、88 %、89 %、90 %、91 %、91.50 %、92. 00 %、92.50 %、93.00 %、93.50 %、94.00 %、94.50 %、95.00 %、95.50 %、96.00 %、96.50 %、97.00 %、97.50 %、98.00 %、98.50 %、99.00 %、99.50 %、99.60 %、99.70 %、99.80 %、99.90 %、100 %與參照多肽序列的全長胺基酸序列相同。在本申請中,除非明確規定,包括/具有與參照多肽(或核苷酸序列)的全長胺基酸序列(或核苷酸序列)至少80%序列同一性/由其組成的多肽(或DNA序列),通常以SEQ ID NO或UniProt ID或Genbank NO.表示,較佳具有至少85%、90%、91%、92%、93%、94%、95%、96%、97%、98%或99%,更佳具有至少85%,又更佳具有至少90%,最佳具有至少95%與全長參照序列相同的序列。As used herein, a polypeptide having an amino acid sequence that has at least 80% sequence identity to the full-length sequence of a reference polypeptide sequence is understood to mean that the sequence has 80%, 81%, 82%, 83%, 84%, 85% , 86%, 87%, 88%, 89%, 90%, 91%, 91.50%, 92.00%, 92.50%, 93.00%, 93.50%, 94.00%, 94.50%, 95.00%, 95.50%, 96.00% , 96.50%, 97.00%, 97.50%, 98.00%, 98.50%, 99.00%, 99.50%, 99.60%, 99.70%, 99.80%, 99.90%, 100% identical to the full-length amino acid sequence of the reference polypeptide sequence. In the present application, unless expressly specified, a polypeptide (or DNA) comprising/having at least 80% sequence identity to the full-length amino acid sequence (or nucleotide sequence) of a reference polypeptide (or nucleotide sequence) sequence), usually represented by SEQ ID NO or UniProt ID or Genbank NO., preferably at least 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% Or 99%, more preferably at least 85%, still more preferably at least 90%, most preferably at least 95% identical to the full-length reference sequence.
為了本發明的目的,使用MatGAT2.01(Campanella et al., 2003, BMC Bioinformatics 4:29)確定百分比同一性。採用了以下用於蛋白質的預設參數:(1)空位成本存在性(Gap cost Existence):12和延伸:2;(2)採用的矩陣是BLOSUM65。在較佳的實施例中,序列同一性是根據給定的SEQ ID NO的全長序列,即參照序列,或其一部分所計算。其中的一部分較佳是指完整參照序列的至少50%、60%、70%、80%、90%或95%。 For purposes of the present invention, percent identity was determined using MatGAT2.01 (Campanella et al. , 2003, BMC Bioinformatics 4:29). The following preset parameters for proteins were used: (1) Gap cost Existence: 12 and extension: 2; (2) The matrix used was BLOSUM65. In preferred embodiments, sequence identity is calculated from the full-length sequence of a given SEQ ID NO, ie, the reference sequence, or a portion thereof. A portion of which preferably refers to at least 50%, 60%, 70%, 80%, 90% or 95% of the complete reference sequence.
用語「培養物(cultivation)」是指培養基,其中培養或發酵細胞、細胞本身、及藉由在培養液中的本發明細胞產生在其還原端帶有GlcNAc的雙醣及/或寡醣,即,細胞的內部(細胞內)以及外部(細胞外)。The term "culture" refers to a culture medium in which the cells are cultured or fermented, the cells themselves, and disaccharides and/or oligosaccharides with GlcNAc at their reducing ends are produced by the cells of the invention in culture broth, i.e. , the inside (intracellular) as well as the outside (extracellular) of the cell.
本文所用的用語「膜轉運蛋白」是指細胞膜的一部分或與之交互作用並控制分子和資訊橫跨細胞之流動的蛋白質。因此,膜蛋白參與運輸,無論是細胞的輸入或輸出。As used herein, the term "membrane transporter" refers to a protein that is part of or interacts with a cell membrane and controls the flow of molecules and information across a cell. Therefore, membrane proteins are involved in transport, either as input or output to the cell.
如此的膜轉運蛋白可為如轉運分類資料庫(Transporter Classification Database)所定義的運輸蛋白(Porters)、P-P-鍵水解-驅動的轉運體(P-P-bond-hydrolysis-driven transporters)、β-桶狀孔蛋白(β-Barrel Porins)、輔助轉運蛋白(auxiliary transport proteins)、推定轉運蛋白(putative transport proteins)和磷酸轉移-驅動組轉位蛋白(phosphotransfer-driven group translocators),該資料庫由Saier實驗室生物資訊學組(Saier Lab Bioinformatics Group)操作和策劃,且可經由www.tcdb.org獲得,並提供膜轉運蛋白的功能和系統分類。此轉運分類資料庫詳細說明IUBMB批准的膜轉運蛋白的綜合分類系統,稱為轉運分類(TC)系統。本文描述的TCDB分類檢索是基於2019年6月17日發佈的TCDB. Org所定義。Such membrane transporters may be Porters, P-P-bond-hydrolysis-driven transporters, β-barrel as defined in the Transporter Classification Database. Porins (β-Barrel Porins), auxiliary transport proteins (auxiliary transport proteins), putative transport proteins (putative transport proteins) and phosphotransfer-driven group translocators (phosphotransfer-driven group translocators), the database by the Saier laboratory Operated and curated by the Saier Lab Bioinformatics Group, and available via www.tcdb.org, and provides a functional and systematic classification of membrane transporters. This transport taxonomy repository details the IUBMB-approved comprehensive classification system for membrane transporters, known as the Transport Taxonomy (TC) system. The TCDB taxonomic search described in this article is based on the definition of TCDB.Org published on June 17, 2019.
運輸蛋白是利用載體介導過程的單運輸蛋白(uniporters)、共運輸蛋白(symporter)和反向運輸蛋白(antiporter)的總稱(Saier et al., Nucleic Acids Res. 44 (2016) D372-D379)。其屬於電化學電位驅動的轉運體,亦稱為二級載體型促進體。當膜轉運蛋白在單一物種藉由促進擴散或在膜電位依賴過程中(如果溶質是帶電的)運輸時,利用載體介導過程催化單向運輸;當兩個或更多的物種在一個緊密耦合的過程中於反向運輸時,利用載體介導過程催化反向運輸,而不與化學滲透能(chemiosmotic energy)以外的直接形式能量耦合;及/或當兩個或更多的物種在一個緊密耦合過程中以相同方向運輸時,利用載體介導過程催化共同運輸,而不與化學滲透能以外的直接形式能量耦合,則膜轉運蛋白包括在二級載體的此分類中(Forrest et al., Biochim. Biophys. Acta 1807 (2011) 167-188)。這些系統通常具有立體特異性。溶質:溶質反運輸是二級載體的特徵特性。運輸蛋白和酶的動態聯結創造功能性膜,將通常從細胞外腔室獲得的通道基質之代謝群組直接轉運進入到其細胞代謝中(Moraes and Reithmeier, Biochim. Biophys. Acta 1818 (2012), 2687-2706)。經由此運輸蛋白系統運輸的溶質包括但不限於陽離子、有機陰離子、無機陰離子、核苷、胺基酸、多元醇、磷酸化的醣解中間產物、滲透物、螯鐵蛋白(siderophores)。 Transporter is a general term for uniporters, symporters and antiporters that utilize carrier-mediated processes (Saier et al. , Nucleic Acids Res. 44 (2016) D372-D379) . It is an electrochemical potential-driven transporter, also known as a secondary carrier-type facilitator. Carrier-mediated processes catalyze unidirectional transport when membrane transporters are transported in a single species by facilitating diffusion or in a membrane potential-dependent process (if the solute is charged); when two or more species are in a tightly coupled In the process of reverse transport, the use of carrier-mediated processes to catalyze reverse transport without coupling to direct forms of energy other than chemiosmotic energy; and/or when two or more species are in a tight Membrane transporters are included in this classification of secondary carriers when they are transported in the same direction in a coupled process that utilizes carrier-mediated processes to catalyze co-transport without coupling to direct forms of energy other than chemoosmotic energy (Forrest et al. , Biochim. Biophys. Acta 1807 (2011) 167-188). These systems are usually stereospecific. Solutes: Solute back transport is a characteristic property of secondary carriers. The dynamic association of transport proteins and enzymes creates functional membranes that transport the metabolic population of the channel matrix normally obtained from the extracellular compartment directly into its cellular metabolism (Moraes and Reithmeier, Biochim. Biophys. Acta 1818 (2012), 2687-2706). Solutes transported via this transport protein system include, but are not limited to, cations, organic anions, inorganic anions, nucleosides, amino acids, polyols, phosphorylated glycolytic intermediates, osmolytes, siderophores.
如果膜轉運蛋白水解無機焦磷酸、ATP或另一種核苷三磷酸的二磷酸鍵,以驅動一或多種溶質的主動攝入及/或排出,則該膜轉運蛋白包含在P-P-鍵水解-驅動的轉運體的分類中(Saier et al., Nucleic Acids Res. 44 (2016) D372-D379)。膜轉運蛋白可能或不可能被暫時性磷酸化,但基質不被磷酸化。經由P-P-鍵水解-驅動的轉運體運輸的基質包括但不限於陽離子、重金屬、β-葡聚糖、UDP-葡萄糖、脂多醣、磷壁酸(teichoic acid)。 A membrane transporter is included in a PP-bond hydrolysis-drive if it hydrolyzes the diphosphate bond of an inorganic pyrophosphate, ATP or another nucleoside triphosphate to drive the active uptake and/or excretion of one or more solutes in the classification of transporters (Saier et al. , Nucleic Acids Res. 44 (2016) D372-D379). Membrane transporters may or may not be transiently phosphorylated, but substrates are not. Substrates transported via PP-bond hydrolysis-driven transporters include, but are not limited to, cations, heavy metals, beta-glucans, UDP-glucose, lipopolysaccharides, teichoic acid.
β-桶狀孔蛋白膜轉運蛋白形成跨膜孔,其通常允許溶質不依賴能量穿過膜。這些蛋白的跨膜部分完全由形成β-桶狀的β鏈組成(Saier et al., Nucleic Acids Res. 44 (2016) D372-D379)。這些孔蛋白類型的蛋白質存在於革蘭氏陰性菌、粒線體、色素體(plastid)和可能在抗酸革蘭氏陽性菌(acid-fast Gram-positive bacteria)的外膜。經由這些β-桶狀孔蛋白運輸的溶質包括但不限於核苷、棉子糖、葡萄糖、β-葡萄糖苷、寡醣。 The β-barrel porin membrane transporter forms transmembrane pores, which normally allow solutes to pass through the membrane independently of energy. The transmembrane portion of these proteins consists entirely of β-chains that form a β-barrel (Saier et al. , Nucleic Acids Res. 44 (2016) D372-D379). These porin-type proteins are present in Gram-negative bacteria, mitochondria, plastids and possibly the outer membrane of acid-fast Gram-positive bacteria. Solutes transported via these β-barrel porins include, but are not limited to, nucleosides, raffinose, glucose, β-glucosides, oligosaccharides.
輔助轉運蛋白被定義為促進跨越一或多個生物膜的運輸,但本身不直接參與運輸的蛋白質。這些膜轉運蛋白總是與一或多個已建立的轉運系統一起發揮作用,例如但不限於外膜因子(OMFs)、多醣(PST)運輸蛋白、ATP結合盒(ATP-binding cassette,ABC)型運輸蛋白。其可提供與運輸的能量耦合有關的功能,在複合物的形成中發揮結構性作用,發揮生物或穩定性功能或調節功能(Saier et al., Nucleic Acids Res. 44 (2016) D372-D379)。輔助轉運蛋白的例子包括但不限於參與多醣轉運的多醣共聚酶家族、參與菌素(bacteriocin)和化學毒素轉運的膜融合蛋白家族。Cotransporters are defined as proteins that facilitate transport across one or more biological membranes, but are not themselves directly involved in transport. These membrane transporters always function in conjunction with one or more established transport systems such as but not limited to outer membrane factors (OMFs), polysaccharide (PST) transporters, ATP-binding cassette (ABC) type transport protein. It may provide functions related to the energy coupling of transport, play a structural role in the formation of complexes, exert biological or stability functions or regulatory functions (Saier et al., Nucleic Acids Res. 44 (2016) D372-D379) . Examples of cotransporters include, but are not limited to, the polysaccharide copolymerase family involved in polysaccharide transport, the membrane fusion protein family involved in bacteriocin and chemical toxin transport.
推定轉運蛋白包括一些家族,當成員的轉運功能被確定時,這些家族將被分類到別處,或者如果提出的轉運功能被推翻,將自轉運分類系統刪除。這些家族包括一或多個成員,這些成員被認為具有轉運功能,但此功能的證據尚未被信服(Saier et al., Nucleic Acids Res. 44 (2016)D372-D379)。分類於2019年6月17日發佈的TCDB系統下的此組的推定轉運體的例子包括但不限於銅轉運體。Putative transporters include families that will be classified elsewhere when the transport function of a member is determined, or deleted from the autotransport classification system if the proposed transport function is overruled. These families include one or more members that are thought to have a transport function, but evidence for this function has not been convincing (Saier et al., Nucleic Acids Res. 44 (2016) D372-D379). Examples of putative transporters classified in this group under the TCDB system published on June 17, 2019 include, but are not limited to, copper transporters.
磷酸轉移-驅動組轉位蛋亦稱為細菌的磷酸烯醇丙酮酸(磷酸烯醇丙酮酸):糖磷酸轉移酶系統(PTS)的PEP依賴性磷氧基轉移-驅動組轉位蛋白。衍生自細胞外的糖之該反應的產物是細胞質的糖-磷酸鹽。催化糖磷酸化的酶成分是在緊密耦合過程中疊加在運輸過程上。PTS系統關於許多不同態樣,包括調節和趨化(chemotaxis)、生物膜形成及致病機制(Lengeler, J. Mol. Microbiol. Biotechnol. 25 (2015) 79-93;Saier, J. Mol. Microbiol. Biotechnol. 25 (2015)73-78)。分類於2019年6月17日發佈的TCDB系統下的磷酸轉移-驅動組轉位蛋白的膜轉運蛋白家族包括與轉運葡萄糖-葡萄糖苷、果糖-甘露醇、乳糖-N,N'-二乙醯幾丁二糖-β-葡萄糖苷、山梨醇、半乳糖醇、甘露糖-果糖-山梨糖和抗壞血酸有關的PTS系統。Phosphotransferase-driver group translocator also known as bacterial phosphoenolpyruvate (phosphoenolpyruvate): a PEP-dependent phosphotrans-driver group translocator of the sugar phosphotransferase system (PTS). The product of this reaction, derived from extracellular sugars, is cytoplasmic sugar-phosphate. The enzymatic components that catalyze the phosphorylation of sugars are superimposed on the transport process in a tightly coupled process. The PTS system is concerned with many different aspects, including regulation and chemotaxis, biofilm formation and pathogenic mechanisms (Lengeler, J. Mol. Microbiol. Biotechnol. 25 (2015) 79-93; Saier, J. Mol. Microbiol . Biotechnol. 25 (2015) 73-78). The membrane transporter family of phosphate transfer-driven group translocators classified in the TCDB system released on June 17, 2019 includes transporters related to glucose-glucoside, fructose-mannitol, lactose-N,N'-diacetyl Chitobiose-β-glucoside, sorbitol, galactitol, mannose-fructose-sorbose and ascorbic acid-related PTS systems.
主要促進者超級家族(major facilitator superfamily,MFS)是膜轉運蛋白超級家族,其催化單向運輸蛋白、溶質:陽離子(H+,但很少是Na+)共運輸及/或溶質:H+或溶質:溶質反向運輸。如由Saier實驗室生物資訊學組(www.tcdb.org)運作的轉運分類資料庫所定義,大多數轉運體的長度為400-600個胺基酸殘基,擁有12、14或偶爾24個跨膜α-螺旋扳(transmembrane α-helical spanners,TMS)。The major facilitator superfamily (MFS) is a superfamily of membrane transporters that catalyze uniport proteins, solute:cation (H+, but rarely Na+) co-transport and/or solute:H+ or solute:solute reverse shipping. Most transporters are 400-600 amino acid residues in length, with 12, 14, or occasionally 24, as defined by the Transporter Taxonomy Database run by the Saier Laboratory Bioinformatics Group (www.tcdb.org). Transmembrane α-helical spanners (TMS).
本文所用的「SET」或「糖排出轉運體(Sugar Efflux Transporter)」是指SET家族的膜蛋白,其具有InterPRO域IPR004750的蛋白質及/或屬於eggNOGv4.5家族ENOG410XTE9的蛋白質。InterPro域的識別可藉由使用https://www.ebi.ac.uk/interpro/的線上工具或使用預設值的InterProScan(https://www.ebi.ac.uk/interpro/download.html)獨立版本進行。eggNOGv4.5中異種同源y家族的識別可使用eggNOG-mapperv1的線上版本或獨立版本(http://eggnogdb.embl.de/#/app/home)進行。"SET" or "Sugar Efflux Transporter" as used herein refers to membrane proteins of the SET family, proteins with InterPRO domain IPR004750 and/or proteins belonging to the eggNOGv4.5 family ENOG410XTE9. InterPro domains can be identified by using the online tool at https://www.ebi.ac.uk/interpro/ or by using the default InterProScan (https://www.ebi.ac.uk/interpro/download.html ) for the standalone version. Identification of the heterologous y family in eggNOGv4.5 can be performed using the online version or the standalone version of eggNOG-mapperv1 (http://eggnogdb.embl.de/#/app/home).
本文所用的用語「螯鐵蛋白(Siderophore)」是指各種微生物的二級代謝物,其主要是鐵離子特異性螯合劑。這些分子被分類為兒茶酚鹽(catecholate)、羥胺鹽(hydroxamate)、羧酸鹽(carboxylate)和混合類型。螯鐵蛋白一般是藉由非核糖體肽合成酶(nonribosomal peptide synthetase,NRPS)依賴途徑或NRPS獨立途徑(NIS)合成。在NRPS依賴性螯鐵蛋白生物合成途徑中,最重要的前驅物是分支鹽酸(chorismate)。2, 3-DHBA可藉由三步驟反應,在異分支鹽酸合成酶(isochorismate synthase)、異分支鹽酸酶(isochorismatase)和2, 3-二羥基苯甲酸-2, 3-脫氫酶(2, 3-dihydroxybenzoate-2, 3-dehydrogenase)的催化下而自分支鹽酸形成。螯鐵蛋白亦可自水楊酸形成,該水楊酸是藉由異分支鹽酸丙酮酸裂解酶(isochorismate 丙酮酸 lyase)而從異分支鹽形成。當鳥胺酸(ornithine)使用作為螯鐵蛋白的前驅物時,生物合成取決於由L-鳥胺酸N5-單氧酶催化(L-ornithine N5-monooxygenase)的鳥胺酸的羥基化。在NIS途徑中,螯鐵蛋白生物合成的重要步驟是N(6)-羥基離胺酸合成酶。The term "Siderophore" as used herein refers to the secondary metabolites of various microorganisms, which are primarily iron ion-specific chelators. These molecules are classified as catecholate, hydroxamate, carboxylate and mixed types. Chelaterin is generally synthesized by the nonribosomal peptide synthetase (NRPS)-dependent pathway or the NRPS-independent pathway (NIS). In the NRPS-dependent chelatin biosynthesis pathway, the most important precursor is chorismate. 2,3-DHBA can be reacted in three steps by isochorismate synthase, isochorismatase and 2,3-dihydroxybenzoic acid-2,3-dehydrogenase (2,3-dihydroxybenzoic acid-2,3-dehydrogenase). 3-dihydroxybenzoate-2, 3-dehydrogenase) forms self-branched hydrochloric acid. Chelaterin can also be formed from salicylic acid, which is formed from isobranched salts by isochorismate pyruvate lyase. When ornithine is used as a precursor of chelatin, biosynthesis depends on the hydroxylation of ornithine catalyzed by L-ornithine N5-monooxygenase. In the NIS pathway, an important step in chelatin biosynthesis is N(6)-hydroxylysine synthase.
需要轉運體需要將螯鐵蛋白輸出到細胞外。在這一過程中,在此過程中,已識別出四個膜蛋白的超級家族:主要促進者超級家族(major facilitator superfamily,MFS);多藥/寡醣-脂/多醣翻轉酶超級家族(Multidrug/Oligosaccharidyl-lipid/Polysaccharide Flippase Superfamily,MOP);抗性、結核作用和細胞分裂超級家族(resistance, nodulation and cell division superfamily,RND);以及ABC超級家族。一般而言,參與螯鐵蛋白輸出的基因與螯鐵蛋白生物合成基因聚集在一起。本文所使用的用語「螯鐵蛋白輸出體(siderophore exporter)」是指需要將螯鐵蛋白輸出到細胞外的這類轉運體。A transporter is required to export chelatin out of the cell. During this process, four superfamilies of membrane proteins have been identified: the major facilitator superfamily (MFS); the multidrug/oligo-lipo/polysaccharide flipper superfamily (Multidrug /Oligosaccharidyl-lipid/Polysaccharide Flippase Superfamily, MOP); resistance, nodulation and cell division superfamily (RND); and ABC superfamily. In general, genes involved in chelatin export are clustered with chelatin biosynthesis genes. As used herein, the term "siderophore exporter" refers to such a transporter that is required to export chelatin to the outside of the cell.
ATP結合盒(ABC)超級家族包含攝入和排出轉運系統,這兩組成員通常鬆散地群集。ATP水解而不需要蛋白質磷酸化就能為運輸提供能量。ABC超級家族內有幾十個家族,家族一般與基質特異性相關。成員根據經由www.tcdb.org可獲得的Saier實驗室生物資訊學組運作的轉運分類資料庫所定義的3.A.1類進行分類,且該資料庫提供了膜轉運蛋白的功能和系統分類。The ATP-binding cassette (ABC) superfamily contains intake and excretion transport systems, and these two groups of members are usually loosely clustered. ATP hydrolysis without the need for protein phosphorylation provides energy for transport. There are dozens of families within the ABC superfamily, and families are generally associated with substrate specificity. Members are classified according to class 3.A.1 as defined by the Transport Taxonomy Database run by the Saier Laboratory Bioinformatics Group, available at www.tcdb.org, and which provides a functional and systematic classification of membrane transporters .
用語「允許排出(enabled efflux)」表示在細胞質膜及/或細胞壁上引入溶質的轉運活性。可藉由引入及/或增加本發明所述的轉運蛋白的表現允許所述的轉運。用語「促進排出(enhanced efflux)」是指改善溶質在細胞質膜及/或細胞壁上的轉運活性。可藉由引入及/或增加本發明所述的膜轉運蛋白的表現促進溶質在細胞質膜及/或細胞壁上的轉運。膜轉運蛋白的「表現」定義為在編碼該膜轉運蛋白的基因是內源性基因的情況下,該基因的「過度表現」,或在編碼該膜轉運蛋白的基因是異源基因(於野生型菌株或細胞中不存在)的情況下的「表現」。The term "enabled efflux" refers to the introduction of transport activity of solutes on the cytoplasmic membrane and/or cell wall. Said transport can be permitted by introducing and/or increasing the expression of the transporters of the invention. The term "enhanced efflux" refers to improving the transport activity of solutes on the cytoplasmic membrane and/or cell wall. The transport of solutes across the cytoplasmic membrane and/or cell wall can be facilitated by introducing and/or increasing the expression of the membrane transporters of the present invention. "Expression" of a membrane transporter is defined as "overexpression" of the gene encoding the membrane transporter if it is an endogenous gene, or if the gene encoding the membrane transporter is a heterologous gene (in wild-type). type strains or cells).
本文所使用的用語「前驅物(precursor)」是指被用於具體產生雙醣及/或寡醣(例如,在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣)的細胞攝入及/或合成的物質。在此意義上,前驅物可為本文定義的接受者,但也可以是另一種物質、代謝物,其在細胞內先被修飾而作為雙醣及/或寡醣(例如,在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣)的生化合成途徑的一部分。這種前驅物的例子包括本文定義的接受者,及/或葡萄糖、半乳糖、果糖、甘油、唾液酸、岩藻糖、甘露糖、麥芽糖、蔗糖、乳糖、二羥丙酮、葡萄糖胺、甘露糖胺、N-乙醯甘露糖胺、半乳糖胺、N-乙醯半乳糖胺、磷酸化糖,例如但不限於葡萄糖-1-磷酸鹽(glucose-1-phosphate)、半乳糖-1-磷酸鹽(galactose-1-phosphate)、葡萄糖-6-磷酸鹽、果糖-1,6-二磷酸鹽、甘露糖-6-磷酸鹽、甘露糖-1-磷酸鹽、甘油-3-磷酸鹽、甘油醛-3-磷酸鹽、二羥基丙酮-磷酸鹽(dihydroxyacetone-phosphate)、葡萄糖胺-6-磷酸、N-乙醯-葡萄糖胺-6-磷酸鹽、N-乙醯甘露糖胺-6-磷酸鹽、N-乙醯葡萄糖胺-1-磷酸鹽、N-乙醯神經胺酸-9-磷酸鹽及/或本文定義的核苷酸活性糖,例如UDP-葡萄糖、UDP-半乳糖、UDP-N-乙醯葡萄糖胺、CMP-唾液酸、GDP-甘露糖、GDP-4-脫氫-6-去氧-α-D-甘露糖、GDP-岩藻糖。As used herein, the term "precursor" refers to the cellular uptake used to specifically produce disaccharides and/or oligosaccharides (eg, disaccharides or oligosaccharides having an N-acetylglucosamine unit at the reducing end). Incorporated and/or synthesized substances. In this sense, a precursor may be a recipient as defined herein, but may also be another substance, a metabolite, which was first modified in the cell as a disaccharide and/or oligosaccharide (eg, with N at the reducing end - part of the biochemical synthesis pathway of acetylglucosamine units (disaccharides or oligosaccharides). Examples of such precursors include recipients as defined herein, and/or glucose, galactose, fructose, glycerol, sialic acid, fucose, mannose, maltose, sucrose, lactose, dihydroxyacetone, glucosamine, mannose Amines, N-acetylmannosamine, galactosamine, N-acetylgalactosamine, phosphorylated sugars such as but not limited to glucose-1-phosphate, galactose-1-phosphate Salt (galactose-1-phosphate), glucose-6-phosphate, fructose-1,6-diphosphate, mannose-6-phosphate, mannose-1-phosphate, glycerol-3-phosphate, glycerol Aldehyde-3-phosphate, dihydroxyacetone-phosphate, glucosamine-6-phosphate, N-acetyl-glucosamine-6-phosphate, N-acetylmannosamine-6-phosphate salts, N-acetylglucosamine-1-phosphate, N-acetylneuraminic acid-9-phosphate and/or nucleotide-active sugars as defined herein, such as UDP-glucose, UDP-galactose, UDP- N-acetylglucosamine, CMP-sialic acid, GDP-mannose, GDP-4-dehydro-6-deoxy-α-D-mannose, GDP-fucose.
本文所使用的用語「接受者(acceptor)」是指可藉由醣基轉移酶修飾的單醣、雙醣或寡醣。此接受者的例子包括葡萄糖、半乳糖、果糖、甘油、唾液酸、岩藻糖、甘露糖、麥芽糖、蔗糖、乳糖、乳-N-雙糖(LNB)、乳-N-三糖、乳-N-四糖(LNT)、乳-N-新四糖(LNnT)、N-乙醯-乳糖胺(LacNAc)、乳-N-五糖(LNP)、乳-N-新戊糖、對乳-N-戊糖、對乳-N-新戊糖、乳-N-新戊糖I、乳-N-六糖(LNH)、乳-N-新六糖(LNNH)、對乳-N-新六糖(pLNNH)、對乳-N-六糖(pLNH)、乳-N-庚糖(lacto-N-heptaose)、乳-N-新庚糖(lacto-N-neoheptaose)、對乳-N-新庚糖(para lacto-N-neoheptaose)、對乳-N-庚糖(para lacto-N-heptaose)、乳-N-辛糖(lacto-N-octaose,LNO)、乳-N-新辛糖、異乳-N-辛糖、對乳-N-辛糖、異乳-N-新辛糖(iso lacto-N-neooctaose)、新乳-N-新辛糖(novo lacto-N-neooctaose)、對乳-N-新辛糖(para lacto-N-neooctaose)、異乳-N-壬糖(iso lacto-N-nonaose)、新乳-N-壬糖(novo lacto-N-nonaose)、乳-N-壬糖(lacto-N-nonaose)、乳-N-癸糖(lacto-N-decaose)、異乳-N-癸糖(iso lacto-N-decaose)、新乳-N-癸糖(novo lacto-N-decaose)、乳-N-新癸糖(lacto-N-neodecaose)、半乳糖乳醣(galactosyllactose)、以1、2、3、4、5或多個的N-乙醯乳糖胺單元及/或以1、2、3、4、5或多個的乳-N-雙糖單元延伸的乳糖、及包含1個或多個N-乙醯乳糖胺單元及/或1個或多個乳糖-N-雙糖單元的寡醣或其寡醣、岩藻糖基化及唾液酸化形式的中間體。The term "acceptor" as used herein refers to a monosaccharide, disaccharide or oligosaccharide that can be modified by a glycosyltransferase. Examples of such recipients include glucose, galactose, fructose, glycerol, sialic acid, fucose, mannose, maltose, sucrose, lactose, lacto-N-bisaccharide (LNB), lacto-N-trisaccharide, lacto- N-tetrasaccharide (LNT), lacto-N-neotetraose (LNnT), N-acetyl-lactosamine (LacNAc), lacto-N-pentasaccharide (LNP), lacto-N-neopentose, paracetamol -N-pentose, p-lacto-N-neopentose, lacto-N-neopentose I, lacto-N-hexaose (LNH), lacto-N-neohexaose (LNNH), p-lacto-N- Neohexaose (pLNNH), p-lacto-N-heptaose (pLNH), lacto-N-heptaose, lacto-N-neoheptaose, p-lacto-N-heptaose N-neoheptaose (para lacto-N-neoheptaose), para lacto-N-heptaose (para lacto-N-heptaose), lacto-N-octaose (LNO), lacto-N- Neooctose, isolacto-N-octose, p-lacto-N-octose, isolacto-N-neooctaose (iso lacto-N-neooctaose), novo lacto-N -neooctaose), para lacto-N-neooctaose, iso lacto-N-nonaose, novo lacto-N- nonaose), lacto-N-nonaose, lacto-N-decaose, iso lacto-N-decaose, neolacto- N-decaose (novo lacto-N-decaose), lacto-N-neodecaose (lacto-N-neodecaose), galactosyllactose (galactosyllactose), in 1, 2, 3, 4, 5 or more N-acetyllactosamine units and/or lactose extended with 1, 2, 3, 4, 5 or more lacto-N-disaccharide units, and comprising 1 or more N-acetyllactosamine units and /or oligosaccharides of one or more lactose-N-disaccharide units or intermediates thereof in oligosaccharide, fucosylated and sialylated forms.
本發明的詳細說明Detailed Description of the Invention
根據第一態樣,本發明提供一種藉由細胞,較佳為單一細胞產生在還原端具有N-乙醯葡萄糖胺(GlcNAc)單元的雙醣或寡醣之方法。該方法包括以下步驟: - 提供能夠合成核苷酸-糖及單醣GlcNAc並能夠醣化該GlcNAc單醣的細胞, - 在允許產生該雙醣或寡醣的條件下培養該細胞, - 較佳地,自培養物分離該雙醣或寡醣。 According to a first aspect, the present invention provides a method for producing a disaccharide or oligosaccharide having an N-acetylglucosamine (GlcNAc) unit at the reducing end by a cell, preferably a single cell. The method includes the following steps: - Provide cells capable of synthesizing nucleotide-sugar and monosaccharide GlcNAc and saccharifying the GlcNAc monosaccharide, - culturing the cell under conditions that allow the production of the disaccharide or oligosaccharide, - Preferably, the disaccharide or oligosaccharide is isolated from the culture.
在本發明的範疇中,字詞「允許產生該雙醣或寡醣的條件(conditions permissive for producing said di- or oligosaccharide)」應理解為與物理或化學參數有關的條件,其包括但不限於溫度、pH值、壓力、滲透壓和產物/前驅物/接受者濃度。In the context of the present invention, the words "conditions permissive for producing said di- or oligosaccharide" are to be understood as conditions related to physical or chemical parameters, including but not limited to temperature , pH, pressure, osmotic pressure and product/precursor/acceptor concentrations.
在特定實施例,此條件可包含30 +/- 20攝氏度的溫度範圍、7 +/- 3的 pH值範圍。In certain embodiments, such conditions may include a temperature range of 30 +/- 20 degrees Celsius, a pH range of 7 +/- 3.
在本申請中,特徵「雙醣或寡醣」較佳以「寡醣」替代,特徵「雙醣及/或寡醣」較佳以「寡醣」替代。根據本發明,細胞能夠合成GlcNAc且此GlcNAc單醣進一步藉由醣化修飾,該醣化在同一細胞中進行,以合成在還原端具有GlcNAc的雙醣或寡醣。藉此,細胞表現醣基轉移酶,以使合成的N-乙醯葡萄糖胺醣化,形成本發明的在還原端帶有GlcNAc的雙醣或寡醣。In this application, the characteristic "disaccharide or oligosaccharide" is preferably replaced by "oligosaccharide", and the characteristic "disaccharide and/or oligosaccharide" is preferably replaced by "oligosaccharide". According to the present invention, cells are capable of synthesizing GlcNAc and this GlcNAc monosaccharide is further modified by saccharification, which is carried out in the same cell, to synthesize disaccharides or oligosaccharides with GlcNAc at the reducing end. Thereby, the cell expresses a glycosyltransferase to glycosylate the synthetic N-acetylglucosamine to form the disaccharide or oligosaccharide of the present invention with GlcNAc at the reducing end.
因此,本發明提供一種藉由細胞,較佳為單一細胞產生在還原端具有N-乙醯葡萄糖胺(GlcNAc)單元的雙醣或寡醣之方法。該方法包括以下步驟: - 提供能夠合成核苷酸-糖及單醣GlcNAc並能夠表現醣基轉移酶以醣化該GlcNAc單醣而形成該雙醣或寡醣的細胞, - 在允許產生該雙醣或寡醣的條件下培養該細胞, - 在允許產生該雙醣或寡醣的條件下培養該細胞, - 較佳地,自培養物分離該雙醣或寡醣。 Accordingly, the present invention provides a method for the production of disaccharides or oligosaccharides having N-acetylglucosamine (GlcNAc) units at the reducing end by cells, preferably single cells. The method includes the following steps: - provide cells capable of synthesizing nucleotide-sugar and monosaccharide GlcNAc and capable of expressing glycosyltransferases to glycosylate the GlcNAc monosaccharide to form the disaccharide or oligosaccharide, - culturing the cell under conditions that allow the production of the disaccharide or oligosaccharide, - culturing the cell under conditions that allow the production of the disaccharide or oligosaccharide, - Preferably, the disaccharide or oligosaccharide is isolated from the culture.
醣基轉移酶是催化來自活化的供給者分子的糖部分轉移到特定的接受者分子,以形成醣苷鍵的酶。如本文所用的該醣基轉移酶可選自包含下列的列舉但不限於此:α-1,2-岩藻糖基轉移酶(alpha-1,2- fucosyltransferases)、α-1,3/1,4-岩藻糖基轉移酶、α-1,6-岩藻糖基轉移酶、α-2,3-唾液酸轉移酶(alpha-2,3-sialyltransferases)、α-2,6-唾液酸轉移酶,α-2,8-唾液酸轉移酶、β-1,3-半乳糖基轉移酶、β-1,4-半乳糖基轉移酶、α-1,3-半乳糖基轉移酶、α-1,4-半乳糖基轉移酶、N-乙醯基葡糖胺轉移酶、N-乙醯基半乳糖胺轉移酶、葡萄糖基轉移酶(glucosyltransferases)、甘露醣基轉移酶、N-乙醯基甘露糖胺轉移酶、木醣基轉移酶、葡萄糖醛酸苷轉移酶(glucuronyltransferases)、半乳醣醛酸轉移酶、葡萄糖胺轉移酶、N-乙醇醯神經胺轉移酶(glycolylneuraminyltransferases)。Glycosyltransferases are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules to form glycosidic bonds. The glycosyltransferases as used herein may be selected from a list comprising but not limited to the following: alpha-1,2-fucosyltransferases, alpha-1,3/1 ,4-fucosyltransferase, alpha-1,6-fucosyltransferase, alpha-2,3-sialyltransferases (alpha-2,3-sialyltransferases), alpha-2,6-sialyltransferase Acid transferase, α-2,8-sialyltransferase, β-1,3-galactosyltransferase, β-1,4-galactosyltransferase, α-1,3-galactosyltransferase , α-1,4-galactosyltransferase, N-acetylglucosamine transferase, N-acetylgalactosamine transferase, glucosyltransferases (glucosyltransferases), mannosyltransferase, N -Acetylmannosyltransferase, xylosyltransferase, glucuronyltransferases, galacturonyltransferases, glucosamine transferases, N-glycolylneuraminyltransferases .
細胞需要在細胞內產生GlcNAc,以便能夠進一步對合成的GlcNAc進行醣化。GlcNAc的細胞內產生需要理解為在細胞內或細胞質內的合成GlcNAc,而不是在胞器或胞器膜或細胞的周質或細胞膜或細胞壁內的合成。Cells need to produce GlcNAc intracellularly in order to be able to further glycation the synthetic GlcNAc. Intracellular production of GlcNAc needs to be understood as synthesis of GlcNAc within the cell or within the cytoplasm and not within the organelle or organelle membrane or the periplasm of the cell or the cell membrane or cell wall.
在較佳實施例中,本文所述的細胞表現至少一N-乙醯葡萄糖胺-6-磷酸轉移酶及磷酸酶,以合成N-乙醯葡萄糖胺。在此較佳實施例中,該N-乙醯葡萄糖胺-6-磷酸轉移酶為在細胞中能夠將葡萄糖胺-6-磷酸鹽轉變成N-乙醯葡萄糖胺-6-磷酸鹽的酶,且該磷酸酶為在細胞中能夠將N-乙醯葡萄糖胺-6-磷酸鹽去磷酸化以產生N-乙醯葡萄糖胺。在更佳實施例中,此磷酸酶為HAD樣(HAD-like)磷酸酶。來自HAD超級家族和HAD樣家族的磷酸酶在本領域中被描述。這些家族的例子可以在來自大腸桿菌的基因 yqaB、 inhX、 yniC、 ybiV、 yidA、 ybjI、 yigL或 cof 、或例如包括aphA、Cof、HisB、OtsB、SurE、Yaed、YcjU、YedP、YfbT、YidA、YigB、YihX、YniC、YqaB、YrbL、AppA、Gph、SerB、YbhA、YbiV、YbjL、Yfb、YieH、YjgL、YjjG、YrfG及YbiU的任一或多個的大腸桿菌基因;或來自惡臭假單胞菌( Pseudomonas putida)的 PsMupP 、來自啤酒酵母菌( S. cerevisiae)的ScDOG1、或來自枯草芽孢桿菌( Bacillus subtilis)的BsAraL基因(如WO18122225所述)所表現的酶中發現。在埃默森小芽枝黴( Blastocladiella emersonii)識別出催化此反應的一種磷酸酶。磷酸酶通常並不特異且活性通常與家族或結構相關。因此,在所有的磷酸酶家族中都可以找到其他的例子。特定的磷酸酶藉由如Fahs等人(ACS Chem. Biol. 11(11), 2944-2961 (2016))描述的已知方法可容易地識別和篩選。 In preferred embodiments, the cells described herein express at least one N-acetylglucosamine-6-phosphotransferase and phosphatase to synthesize N-acetylglucosamine. In this preferred embodiment, the N-acetylglucosamine-6-phosphotransferase is an enzyme capable of converting glucosamine-6-phosphate to N-acetylglucosamine-6-phosphate in cells, And this phosphatase is capable of dephosphorylating N-acetylglucosamine-6-phosphate in cells to produce N-acetylglucosamine. In a more preferred embodiment, the phosphatase is an HAD-like phosphatase. Phosphatases from the HAD superfamily and HAD-like family are described in the art. Examples of these families can be found in the genes yqaB , inhX , yniC , ybiV , yidA , ybjI , yigL or cof from E. coli , or include, for example, aphA, Cof, HisB, OtsB, SurE, Yaed, YcjU, YedP, YfbT, YidA, E. coli genes of any one or more of YigB, YihX, YniC, YqaB, YrbL, AppA, Gph, SerB, YbhA, YbiV, YbjL, Yfb, YieH, YjgL, YjjG, YrfG and YbiU; or from Pseudomonas putida PsMupP from Pseudomonas putida , ScDOG1 from S. cerevisiae , or enzymes expressed by the BsAraL gene from Bacillus subtilis (as described in WO18122225). A phosphatase catalyzing this reaction was identified in Blastocladiella emersonii . Phosphatases are generally not specific and activities are usually family or structure related. Thus, other examples can be found in all phosphatase families. Specific phosphatases are readily identified and screened by known methods as described by Fahs et al. (ACS Chem. Biol. 11(11), 2944-2961 (2016)).
在本發明的內容中,應理解的是根據本發明的在還原端具有GlcNAc單元的雙醣或寡醣是在細胞內合成。所屬技術領域中具通常知識者將進一步理解,部分(fraction)或實質上全部合成的還原端具有GlcNAc單元的雙醣或寡醣保留在細胞內及/或經由被動或主動運輸排出細胞外。In the context of the present invention, it is understood that the disaccharide or oligosaccharide according to the present invention having a GlcNAc unit at the reducing end is synthesized intracellularly. Those of ordinary skill in the art will further appreciate that a fraction or substantially all of the synthesized disaccharides or oligosaccharides having a GlcNAc unit at the reducing end remain intracellularly and/or are excreted via passive or active transport.
在較佳實施例中,該細胞能夠表現至少一種醣基轉移酶,以醣化該GlcNAc單醣而形成該雙醣或寡醣。在另一較佳實施例中,該細胞能夠表現至少兩種、更佳為至少三種、又更佳為至少四種、又更佳為至少五種、最佳為至少六種醣基轉移酶,以醣化該GlcNAc單醣而形成根據本發明的該雙醣或寡醣。In preferred embodiments, the cell is capable of expressing at least one glycosyltransferase to saccharify the GlcNAc monosaccharide to form the disaccharide or oligosaccharide. In another preferred embodiment, the cell is capable of expressing at least two, more preferably at least three, still more preferably at least four, still more preferably at least five, and most preferably at least six glycosyltransferases, The disaccharide or oligosaccharide according to the invention is formed by saccharifying the GlcNAc monosaccharide.
在本發明的內容中,該核苷酸-糖較佳為用於該醣基轉移酶的供給者。較佳地,該細胞能夠合成至少兩種、更佳為至少三種、又更佳為至少四種、最佳為至少五種核苷酸-糖。In the context of the present invention, the nucleotide-sugar is preferably the supplier for the glycosyltransferase. Preferably, the cell is capable of synthesizing at least two, more preferably at least three, still more preferably at least four, most preferably at least five nucleotide-sugars.
在較佳實施例中,該雙醣或寡醣為乳-N-雙糖(LNB)或N-乙醯乳糖胺(LacNAc),較佳為在還原端含有LNB或LacNAc的寡醣,更佳為LNB或LacNAc的唾液酸化及/或岩藻糖基化及/或半乳糖基化及/或GlcNAc-修飾形式、或者又更佳為在還原端含有LNB或LacNAc的寡醣的唾液酸化及/或岩藻糖基化及/或半乳糖基化及/或GlcNAc-修飾形式。在另一較佳實施例中,該雙醣或寡醣為在還原端具有N-乙醯葡萄糖胺單元的中性雙醣或寡醣,較佳為在還原端含有LNB或LacNAc的中性寡醣。較佳地,該中性寡醣為岩藻糖基化。或者,較佳為該中性寡醣並未岩藻糖基化。In a preferred embodiment, the disaccharide or oligosaccharide is lacto-N-bisaccharide (LNB) or N-acetyllactosamine (LacNAc), preferably an oligosaccharide containing LNB or LacNAc at the reducing end, more preferably sialylated and/or fucosylated and/or galactosylated and/or GlcNAc-modified forms of LNB or LacNAc, or, more preferably, sialylated and/or oligosaccharides containing LNB or LacNAc at the reducing end or fucosylated and/or galactosylated and/or GlcNAc-modified forms. In another preferred embodiment, the disaccharide or oligosaccharide is a neutral disaccharide or oligosaccharide with N-acetylglucosamine unit at the reducing end, preferably a neutral oligosaccharide containing LNB or LacNAc at the reducing end sugar. Preferably, the neutral oligosaccharide is fucosylated. Alternatively, it is preferred that the neutral oligosaccharide is not fucosylated.
在另一較佳實施例中,本發明提供一種藉由細胞,較佳為單一細胞產生在還原端具有N-乙醯葡萄糖胺(GlcNAc)單元的雙醣及/或寡醣混合物之方法。該方法包括以下步驟: - 提供能夠合成核苷酸-糖及單醣GlcNAc並能夠表現醣基轉移酶以醣化該GlcNAc單醣而形成其還原端具有GlcNAc的該雙醣及/或寡醣混合物的細胞, - 在允許產生該還原端具有GlcNAc的雙醣及/或寡醣的混合物的條件下培養該細胞, - 較佳地,自培養物分離該混合物。 In another preferred embodiment, the present invention provides a method for producing a mixture of disaccharides and/or oligosaccharides having N-acetylglucosamine (GlcNAc) units at the reducing end by a cell, preferably a single cell. The method includes the following steps: - providing cells capable of synthesizing nucleotide-sugar and monosaccharide GlcNAc and capable of expressing a glycosyltransferase to glycosylate the GlcNAc monosaccharide to form the disaccharide and/or oligosaccharide mixture with GlcNAc at its reducing end, - culturing the cell under conditions allowing the production of a mixture of disaccharides and/or oligosaccharides having GlcNAc at the reducing end, - Preferably, the mixture is isolated from the culture.
根據本發明,該混合物包括或由至少兩種不同的其還原端具有GlcNAc的雙醣及/或寡醣所組成,較佳為包括或由至少三種不同的其還原端具有GlcNAc的雙醣及/或寡醣所組成,更佳為包括或由至少四種不同的其還原端具有GlcNAc的雙醣及/或寡醣所組成。較佳地,該混合物包括或由中性雙醣及/或寡醣所組成。更佳地,該混合物包括或由帶電及/或中性的雙醣及/或寡醣所組成。在本方法及/或細胞的較佳實施例中,帶電雙醣及/或寡醣為唾液酸化的雙醣及/或寡醣。在本方法及/或細胞的較佳實施例中,中性的雙醣及/或寡醣為岩藻糖基化的。在本方法及/或細胞的另一較佳實施例中,中性的雙醣及/或寡醣並未岩藻糖基化。According to the present invention, the mixture comprises or consists of at least two different disaccharides and/or oligosaccharides having GlcNAc at their reducing ends, preferably at least three different disaccharides and/or oligosaccharides having GlcNAc at their reducing ends or oligosaccharides, more preferably including or consisting of at least four different disaccharides and/or oligosaccharides having GlcNAc at their reducing ends. Preferably, the mixture comprises or consists of neutral disaccharides and/or oligosaccharides. More preferably, the mixture comprises or consists of charged and/or neutral disaccharides and/or oligosaccharides. In a preferred embodiment of the method and/or cell, the charged disaccharides and/or oligosaccharides are sialylated disaccharides and/or oligosaccharides. In preferred embodiments of the method and/or cell, the neutral disaccharides and/or oligosaccharides are fucosylated. In another preferred embodiment of the method and/or cell, the neutral disaccharides and/or oligosaccharides are not fucosylated.
在本發明的範疇中較佳為一種藉由細胞,較佳為單一細胞產生混合物之方法,該混合物包括(i)如本文所述之在還原端具有N-乙醯葡萄糖胺(GlcNAc)單元的雙醣及/或寡醣、及(ii)一或多種基於乳糖的哺乳動物乳寡醣(MMO),較佳為一或多種基於乳糖的人乳寡醣(HMOs)。該方法包括以下步驟: - 提供細胞,該細胞(i)能夠合成核苷酸-糖及單醣GlcNAc且能夠表現醣基轉移酶以醣化該GlcNAc單醣而產生該雙醣及/或寡醣,且(ii)其中該細胞進一步能夠表現一或多種醣基轉移酶以醣化乳糖而產生該一或多種基於乳糖的哺乳動物乳寡醣且其中該細胞能夠合成一或多種核苷酸-糖,其為用於該醣基轉移酶的供給者,其中該乳糖是由細胞(較佳為細胞內)所製造或在培養之前及/或之後添加, - 在允許產生包括(i)雙醣及/或寡醣及(ii)一或多種基於乳糖的哺乳動物乳寡醣的混合物的條件下培養該細胞, - 較佳地,自培養物分離該混合物。 Preferred within the scope of the present invention is a method by a cell, preferably a single cell, to produce a mixture comprising (i) a N-acetylglucosamine (GlcNAc) unit as described herein at the reducing end Disaccharides and/or oligosaccharides, and (ii) one or more lactose-based mammalian milk oligosaccharides (MMOs), preferably one or more lactose-based human milk oligosaccharides (HMOs). The method includes the following steps: - providing cells that are (i) capable of synthesizing nucleotide-sugar and monosaccharide GlcNAc and capable of expressing a glycosyltransferase to saccharify the GlcNAc monosaccharide to produce the disaccharide and/or oligosaccharide, and (ii) wherein the The cell is further capable of expressing one or more glycosyltransferases to saccharify lactose to produce the one or more lactose-based mammalian milk oligosaccharides and wherein the cell is capable of synthesizing one or more nucleotide-sugars for the glycosyl a supplier of transferase, wherein the lactose is produced by cells (preferably intracellularly) or added before and/or after culturing, - culturing the cell under conditions allowing the production of a mixture comprising (i) disaccharides and/or oligosaccharides and (ii) one or more lactose-based mammalian milk oligosaccharides, - Preferably, the mixture is isolated from the culture.
所屬技術領域中具通常知識者將理解的是,參與產生該還原端具有GlcNAc的雙醣及/或寡醣的一或多種醣基轉移酶可與醣化乳糖以形成一或多種基於乳糖的哺乳動物乳寡醣的醣基轉移酶相同。或者,參與產生該還原端具有GlcNAc的雙醣及/或寡醣的醣基轉移酶與參與產生一或多種基於乳糖的哺乳動物乳寡醣的醣基轉移酶不同。It will be understood by those of ordinary skill in the art that one or more glycosyltransferases involved in the production of disaccharides and/or oligosaccharides with GlcNAc at the reducing end can saccharify lactose to form one or more lactose-based mammalian The glycosyltransferases of lacto-oligosaccharides are the same. Alternatively, the glycosyltransferases involved in the production of the disaccharides and/or oligosaccharides with GlcNAc at the reducing end are different from the glycosyltransferases involved in the production of one or more lactose-based mammalian milk oligosaccharides.
所屬技術領域中具通常知識者亦將理解的是,參與產生該還原端具有GlcNAc的雙醣及/或寡醣的一或多種核苷酸-糖可以與參與產生一或多種基於乳糖的哺乳動物乳寡醣的核苷酸-糖相同。或者,參與產生該還原端具有GlcNAc的雙醣及/或寡醣的一或多種核苷酸-糖可以與參與產生一或多種基於乳糖的哺乳動物乳寡醣的核苷酸-糖不同。It will also be understood by those of ordinary skill in the art that the one or more nucleotide-sugars involved in the production of disaccharides and/or oligosaccharides with GlcNAc at the reducing end may be associated with the production of one or more lactose-based mammals. The nucleotide-sugar of lacto-oligosaccharide is the same. Alternatively, the one or more nucleotide-sugars involved in the production of the disaccharide and/or oligosaccharide with GlcNAc at the reducing end may be different from the nucleotide-sugars involved in the production of one or more lactose-based mammalian milk oligosaccharides.
產生在還原端具有GlcNAc單元的雙醣或寡醣以及產生在還原端具有GlcNAc單元的雙醣及/或寡醣混合物的方法及/或細胞的內容中所揭露的每個實施例亦揭露在產生混合物之方法的內容中,該混合物包括(i)在還原端具有GlcNAc單元的雙醣及/或寡醣、及(ii)一或多種基於乳糖的哺乳動物乳寡醣,較佳為一或多種基於乳糖的人乳寡醣。Each embodiment disclosed in the content of methods and/or cells for producing disaccharides or oligosaccharides having GlcNAc units at the reducing end and producing mixtures of disaccharides and/or oligosaccharides having GlcNAc units at the reducing end is also disclosed in the production of In the context of the method of a mixture comprising (i) a disaccharide and/or oligosaccharide having a GlcNAc unit at the reducing end, and (ii) one or more lactose-based mammalian milk oligosaccharides, preferably one or more Lactose-based human milk oligosaccharides.
此外,本文在產生還原端具有GlcNAc單元的雙醣或寡醣或包括還原端具有GlcNAc單元的雙醣及/或寡醣的混合物的方法及/或細胞方面的內容中所揭露的每個實施例亦揭露用於產生一或多種基於乳糖的哺乳動物乳寡醣。例如,為了產生在還原端具有GlcNAc單元的雙醣或寡醣而揭露的醣基轉移酶和核苷酸-糖的量和同一性亦可應用於產生一或多種基於乳糖的哺乳動物乳寡醣的內容。這同樣適用於本發明的其他態樣,如該細胞產生在還原端具有GlcNAc單元的雙醣或寡醣之用途。Furthermore, each of the embodiments disclosed herein in terms of methods and/or cells for producing disaccharides or oligosaccharides having GlcNAc units at the reducing end or mixtures comprising disaccharides and/or oligosaccharides having GlcNAc units at the reducing end Also disclosed are mammalian milk oligosaccharides for the production of one or more lactose-based. For example, the amounts and identities of glycosyltransferases and nucleotide-sugars disclosed to produce disaccharides or oligosaccharides with GlcNAc units at the reducing end can also be applied to produce one or more lactose-based mammalian milk oligosaccharides Content. The same applies to other aspects of the invention, such as the use of the cell to produce a disaccharide or oligosaccharide having a GlcNAc unit at the reducing end.
另一實施例提供一種藉由基因改造細胞,較佳為單一基因改造細胞產生該還原端具有GlcNAc單元的雙醣或寡醣之方法,該方法包括以下步驟: - 提供能夠合成核苷酸-糖及單醣GlcNAc並能夠醣化該GlcNAc單醣的基因改造細胞, - 在允許產生該雙醣或寡醣的條件下培養該細胞, - 較佳地,自培養物分離該雙醣或寡醣。 Another embodiment provides a method for producing a disaccharide or oligosaccharide having a GlcNAc unit at the reducing end by genetically modifying a cell, preferably a single genetically modified cell, the method comprising the following steps: - Provide genetically modified cells capable of synthesizing nucleotide-sugar and monosaccharide GlcNAc and saccharifying the GlcNAc monosaccharide, - culturing the cell under conditions that allow the production of the disaccharide or oligosaccharide, - Preferably, the disaccharide or oligosaccharide is isolated from the culture.
在本申請中,除非另有明確說明,「基因改造細胞(genetically modified cell)」或「代謝工程細胞(metabolically engineered cell)」較佳是指分別經過基因改造或代謝工程的細胞,其用於產生根據本發明的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。In this application, unless expressly stated otherwise, "genetically modified cell" or "metabolically engineered cell" preferably refers to a genetically modified or metabolically engineered cell, respectively, which is used to produce A disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end according to the present invention.
根據第二態樣,提供一種代謝工程細胞,其能夠(i)合成核苷酸-糖、(ii)合成N-乙醯葡萄糖胺、及(iii)醣化該N-乙醯葡萄糖胺單醣,其中該細胞產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣(或如本文所揭露的混合物),即,該細胞經代謝工程以用於產生該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣(或如本文所揭露的混合物)。還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣(或如本文所揭露的混合物)較佳不發生在該代謝工程細胞的野生型中。According to a second aspect, there is provided a metabolically engineered cell capable of (i) synthesizing nucleotide-sugars, (ii) synthesizing N-acetylglucosamine, and (iii) saccharifying the N-acetylglucosamine monosaccharide, wherein the cell produces disaccharides or oligosaccharides (or mixtures as disclosed herein) having N-acetylglucosamine units at the reducing end, i.e., the cell is metabolically engineered for production of N-acetylglucosamine at the reducing end Disaccharides or oligosaccharides of amine units (or mixtures as disclosed herein). Disaccharides or oligosaccharides (or mixtures as disclosed herein) with N-acetylglucosamine units at the reducing end preferably do not occur in the wild type of the metabolically engineered cells.
因此,本發明提供一種經代謝工程以用於產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之細胞,其中該細胞能夠(i)合成核苷酸-糖、(ii)合成N-乙醯葡萄糖胺、及(iii)表現醣基轉移酶以醣化該GlcNAc單醣而形成該雙醣或寡醣。進一步具體說明第二態樣的任何特徵(例如,該核苷酸-糖及醣基轉移酶的量和同一性;包含其混合物之該雙醣或寡醣的量和同一性;等)之本發明的第一態樣之各實施例視為亦揭露在第二態樣的內容中。Accordingly, the present invention provides a cell metabolically engineered for the production of disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end, wherein the cell is capable of (i) synthesizing nucleotide-sugars, (ii) synthesizing N-acetylglucosamine, and (iii) express a glycosyltransferase to saccharify the GlcNAc monosaccharide to form the disaccharide or oligosaccharide. Further specifying any characteristic of the second aspect (eg, the amount and identity of the nucleotide-sugar and glycosyltransferase; the amount and identity of the disaccharide or oligosaccharide comprising mixtures thereof; etc.) Embodiments of the first aspect of the invention are considered to be also disclosed in the context of the second aspect.
在本文所述的方法及細胞中,細胞較佳包括包括編碼一種蛋白質的同一編碼DNA序列的多個拷貝。在本發明的內容中,該蛋白質可為醣基轉移酶、膜轉運蛋白或本文揭露的任何其他蛋白質。在本申請中,「多個(multiple)」表示至少2個,較佳至少3個,更佳至少4個,又更佳至少5個。In the methods and cells described herein, the cells preferably include multiple copies of the same coding DNA sequence that encodes a protein. In the context of the present invention, the protein may be a glycosyltransferase, a membrane transporter, or any other protein disclosed herein. In this application, "multiple" means at least 2, preferably at least 3, more preferably at least 4, and more preferably at least 5.
在本發明所述的方法和細胞中,細胞較佳對選自以下群組的酶的表現或活性進行基因改造:N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶、醣基轉移酶、L-麩醯胺—D-果糖-6-磷酸轉胺酶或UDP-葡萄糖4-表異構酶。根據本發明,包括N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶、醣基轉移酶、L-麩醯胺—D-果糖-6-磷酸轉胺酶或UDP-葡萄糖4-表異構酶的上述列舉的酶是經修飾的表現或活性的內源性蛋白質,較佳地該內源性蛋白質為過度表現;或者上述組的酶是異源蛋白質,其可以由細胞進行異源表現。然後,異源表現的蛋白質被引入並表現,較佳為過度表現。在另一個實施例中,內源性蛋白質在細胞中可具有經修飾的表現,該細胞亦表現異源蛋白質。異源表現可來自宿主的基因組或也可來自本文所述的引入細胞的載體。In the methods and cells of the present invention, the cells are preferably genetically modified for the expression or activity of an enzyme selected from the group consisting of N-acetylglucosamine-6-phosphotransferase, phosphatase, glycosyltransferase , L-glutamine-D-fructose-6-phosphate transaminase or UDP-glucose 4-epimerase. According to the present invention, including N-acetylglucosamine-6-phosphotransferase, phosphatase, glycosyltransferase, L-glutamine-D-fructose-6-phosphotransferase or UDP-glucose 4-epiiso The above-listed enzymes of the constitutive enzymes are modified expression or activity of endogenous proteins, preferably the endogenous proteins are overexpressed; or the enzymes of the above group are heterologous proteins, which can be heterologously expressed by the cell . The heterologously expressed protein is then introduced and expressed, preferably overexpressed. In another embodiment, the endogenous protein can have a modified expression in a cell that also expresses the heterologous protein. Heterologous expression can be derived from the genome of the host or from the vector introduced into the cell as described herein.
包括N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶、醣基轉移酶、L-麩醯胺—D-果糖-6-磷酸轉胺酶或UDP-葡萄糖4-表異構酶的上述列舉的酶可以使用本領域已知的技術經由重組DNA技術產生的多核苷酸表現而產生。所屬技術領域中具通常知識者已知的方法可用於構建含有本發明多肽的編碼序列和適當的轉錄及/或轉譯控制訊號的表現載體。這些方法包括,例如體外重組DNA技術、合成技術及體內基因重組。例如,參照Sambrook et al. (2001) Molecular Cloning: a laboratory manual, 3rd Edition, Cold Spring Harbor Laboratory Press, CSH, New York or to Current Protocols in Molecular Biology, John Wiley and Sons, N.Y. (1989 and yearly updates)中描述的技術。The above including N-acetylglucosamine-6-phosphotransferase, phosphatase, glycosyltransferase, L-glutamine-D-fructose-6-phosphotransferase or UDP-glucose 4-epimerase The enumerated enzymes can be produced via expression of polynucleotides produced by recombinant DNA technology using techniques known in the art. Methods known to those of ordinary skill in the art can be used to construct expression vectors containing the coding sequences for the polypeptides of the invention and appropriate transcriptional and/or translational control signals. These methods include, for example, in vitro recombinant DNA techniques, synthetic techniques, and in vivo genetic recombination. For example, see Sambrook et al. (2001) Molecular Cloning: a laboratory manual, 3rd Edition, Cold Spring Harbor Laboratory Press, CSH, New York or to Current Protocols in Molecular Biology, John Wiley and Sons, N.Y. (1989 and yearly updates) techniques described in .
根據本發明的另一個態樣,提供載體至細胞,該載體含有編碼包括本文所述之N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶、醣基轉移酶、L-麩醯胺—D-果糖-6-磷酸轉胺酶或UDP-葡萄糖4-表異構酶的如上所列的酶之多核苷酸,其中該多核苷酸與用該載體轉形的細胞識別的控制序列可操作地連接。在一個特佳的實施例中,該載體為表現載體,根據本發明的另一個態樣,該載體可以質體、黏接質體(cosmid)、噬菌體、脂質體或病毒的形式存在。因此,編碼本發明之多肽的多核苷酸可例如包含在載體中,該載體被穩定轉形/轉染至細胞中。在該載體中,本文所述的多肽的編碼序列受啟動子控制。啟動子可為例如誘導型啟動子,以使基因/多核苷酸的表現可被特定地靶向,如果需要,基因可以此方式過度表現。該啟動子亦可為持續型啟動子。可以使用大量的表現系統以產生本發明的多肽。此載體包括,特別是染色體、外顯體(episomal)和病毒衍生的載體,例如,從細菌質體、噬菌體、轉位子、酵母外顯體、插入元件(insertion elements)、酵母染色體元件、病毒衍生的載體,以及從其組合衍生的載體,如從質體和噬菌體基因元件衍生的載體,如黏接質體和噬質體(phagemids)。這些載體可含有選擇標記,例如但不限於抗生素標記、輔助性標記、毒素-抗毒素標記、RNA有義/反義標記。表現系統構建體可含有調節以及引起表現的控制區域。一般而言,任何適合維持、繁殖或表現多核苷酸及/或在宿主中表現多肽的系統或載體可用於此方面的表現。適當的DNA序列可以藉由各種已知且常規技術中的任一插入至表現系統中,例如上述Sambrook等人提出的技術等。為了進行重組產生,可對細胞進行基因工程,以併入本發明的表現系統或其部分或多核苷酸。將多核苷酸引入細胞可藉由許多標準實驗室手冊中描述的方法進行,如Davis et al., Basic Methods in Molecular Biology,(1986)及上文的Sambrook等人,1989。According to another aspect of the present invention, a vector is provided to a cell, the vector comprising an N-acetylglucosamine-6-phosphotransferase, phosphatase, glycosyltransferase, L-glutamine- A polynucleotide of the enzymes listed above for D-fructose-6-phosphate transaminase or UDP-glucose 4-epimerase, wherein the polynucleotide is operable with control sequences recognized by cells transformed with the vector ground connection. In a particularly preferred embodiment, the vector is an expression vector, and according to another aspect of the present invention, the vector can exist in the form of plastids, cosmids, bacteriophages, liposomes or viruses. Thus, a polynucleotide encoding a polypeptide of the present invention may, for example, be contained in a vector that is stably transformed/transfected into a cell. In this vector, the coding sequence for the polypeptides described herein is under the control of a promoter. The promoter can be, for example, an inducible promoter, so that the expression of the gene/polynucleotide can be specifically targeted, in such a way that the gene can be overexpressed if desired. The promoter can also be a persistent promoter. A number of expression systems can be used to produce the polypeptides of the invention. Such vectors include, in particular, chromosomal, episomal and virus-derived vectors, eg, derived from bacterial plastids, phages, transposons, yeast exosomes, insertion elements, yeast chromosomal elements, viruses and vectors derived from combinations thereof, such as those derived from plastids and phage genetic elements, such as cohesoplasts and phagemids. These vectors may contain selectable markers such as, but not limited to, antibiotic markers, helper markers, toxin-antitoxin markers, RNA sense/antisense markers. Expression system constructs may contain control regions that regulate as well as induce expression. In general, any system or vector suitable for maintaining, propagating or expressing polynucleotides and/or expressing polypeptides in a host can be used for performance in this regard. Appropriate DNA sequences can be inserted into the expression system by any of a variety of known and conventional techniques, such as those proposed by Sambrook et al., supra, and the like. For recombinant production, cells can be genetically engineered to incorporate the expression system of the invention, or portions or polynucleotides thereof. Introduction of polynucleotides into cells can be carried out by a number of methods described in standard laboratory manuals, such as Davis et al., Basic Methods in Molecular Biology, (1986) and Sambrook et al., 1989, supra.
根據本發明的進一步態樣,編碼N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶、醣基轉移酶、L-麩醯胺—D-果糖-6-磷酸轉胺酶或UDP-葡萄糖4-表異構酶的多核苷酸適用於各細胞或表現系統的密碼子用法。According to a further aspect of the invention encoding N-acetylglucosamine-6-phosphotransferase, phosphatase, glycosyltransferase, L-glutamine-D-fructose-6-phosphotransferase or UDP-glucose 4-Epimerase polynucleotides are suitable for codon usage in each cell or expression system.
在另一實施例,本文所用的細胞包括N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶或N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶。N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶及N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶為能夠將來自UDP-半乳糖供給者的半乳糖單元以分別以β-1,3和β-1,4-依賴性醣苷鍵結方式轉移至在GlcNAc接受者之醣基轉移酶。In another embodiment, the cells used herein comprise N-acetylglucosamine b-1,3-galactosyltransferase or N-acetylglucosamine b-1,4-galactosyltransferase. N-acetylglucosamine b-1,3-galactosyltransferase and N-acetylglucosamine b-1,4-galactosyltransferase are capable of converting galactose units from UDP-galactose donors to Transfer to glycosyltransferases at the GlcNAc acceptor in a β-1,3 and β-1,4-dependent glycosidic linkage, respectively.
在另一較佳實施例中,本文所用的細胞,無論是否經基因改造,能夠產生選自以下群組之核苷酸-糖:UDP-半乳糖(UDP-Gal)、UDP-N-乙醯葡萄糖胺(UDP-GlcNAc)、UDP-N-乙醯半乳糖胺(UDP-GalNAc)、UDP-N-乙醯甘露糖胺(UDP-ManNAc)、GDP-岩藻糖(GDP-Fuc)、GDP-甘露糖(GDP-Man)、UDP-葡萄糖(UDP-Glc)、UDP-2-乙醯胺基-2,6-雙去氧--L阿拉伯-4-己酮醣、UDP-2-乙醯胺基-2,6-雙去氧--L-來蘇-4-己酮醣、UDP-N-乙醯基-L-鼠李糖胺(UDP-L-RhaNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-甘露糖)、dTDP-N-乙醯岩藻糖胺、UDP-N-乙醯岩藻糖胺(UDP-L-FucNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-半乳糖)、UDP-N-乙醯基-L-肺炎糖胺(UDP-L-PneNAC或UDP-2-乙醯胺基-2,6-雙去氧-L-塔羅糖)、UDP-N-乙醯胞壁酸、UDP-N-乙醯基-L-奎諾糖胺(UDP-L-QuiNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-葡萄糖)、GDP-L-異鼠李糖、CMP-N-乙醯基神經胺酸(CMP-Neu5Ac)、CMP-N-乙醇醯神經胺酸(CMP-Neu5Gc)、CMP-Neu4Ac、CMP-Neu5Ac9N 3、CMP-Neu4,5Ac 2、CMP-Neu5,7Ac 2、CMP-Neu5,9Ac 2、CMP-Neu5,7(8,9)Ac 2、UDP-葡萄糖醛酸鹽、UDP-半乳糖醛酸鹽、GDP-鼠李糖或UDP-木糖。在進一步實施例中,細胞經基因改造以用於產生該核苷酸-糖。在另一較佳實施例中,細胞經基因改造以用於優化產生該核苷酸-糖。 In another preferred embodiment, the cells used herein, whether genetically engineered or not, are capable of producing a nucleotide-sugar selected from the group consisting of: UDP-galactose (UDP-Gal), UDP-N-acetylene Glucosamine (UDP-GlcNAc), UDP-N-acetylgalactosamine (UDP-GalNAc), UDP-N-acetylmannosamine (UDP-ManNAc), GDP-fucose (GDP-Fuc), GDP -Mannose (GDP-Man), UDP-glucose (UDP-Glc), UDP-2-acetamido-2,6-dideoxy--L-arabino-4-hexulose, UDP-2-ethyl Acetamino-2,6-dideoxy--L-lyxo-4-hexulose, UDP-N-acetyl-L-rhamnosamine (UDP-L-RhaNAc or UDP-2-ethyl Acetamino-2,6-dideoxy-L-mannose), dTDP-N-acetylfucosamine, UDP-N-acetylfucosamine (UDP-L-FucNAc or UDP-2- acetamido-2,6-dideoxy-L-galactose), UDP-N-acetamido-L-pneumolysamine (UDP-L-PneNAC or UDP-2-acetamido-2, 6-Dideoxy-L-talose), UDP-N-Acetylmuramic acid, UDP-N-Acetyl-L-Quinosamine (UDP-L-QuiNAc or UDP-2-Acetyl Amino-2,6-dideoxy-L-glucose), GDP-L-isorhamnose, CMP-N-acetylneuraminic acid (CMP-Neu5Ac), CMP-N-glycolylneuraminic acid (CMP-Neu5Gc), CMP-Neu4Ac, CMP-Neu5Ac9N 3 , CMP-Neu4,5Ac 2 , CMP-Neu5,7Ac 2 , CMP-Neu5,9Ac 2 , CMP-Neu5,7(8,9)Ac 2 , UDP - Glucuronate, UDP-galacturonate, GDP-rhamnose or UDP-xylose. In further embodiments, cells are genetically engineered for the production of the nucleotide-sugar. In another preferred embodiment, cells are genetically engineered for optimized production of the nucleotide-sugar.
在另一實施例中,細胞能夠產生UDP-半乳糖。在優化實施例中,細胞經優化以用於UDP-半乳糖產生。在優化實施例中,細胞在UDP-葡萄糖4-表異構酶GalE的表現或活性方面經修飾,該酶能夠將UDP-葡萄糖轉化為UDP-半乳糖。In another embodiment, the cell is capable of producing UDP-galactose. In an optimized embodiment, the cells are optimized for UDP-galactose production. In an optimized embodiment, the cells are modified in the expression or activity of the UDP-glucose 4-epimerase GalE, which is capable of converting UDP-glucose to UDP-galactose.
在進一步實施例中,由細胞合成的核苷酸-糖為UDP-半乳糖且醣基轉移酶為N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶或N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶。In a further embodiment, the nucleotide-sugar synthesized by the cell is UDP-galactose and the glycosyltransferase is N-acetylglucosamine b-1,3-galactosyltransferase or N-acetylglucosamine b-1,4-galactosyltransferase.
在較佳實施例中,細胞中產生的雙醣為乳-N-雙糖(Gal-b1,3-GlcNAc)或N-乙醯乳糖胺(Gal-b1,4-GlcNAc),其在非還原端含有半乳糖單元,該半乳糖單元分別以β-1,3-或β-1,4-依賴性醣苷鍵結的方式連接至存在於雙醣還原端的GlcNAc部分。在另一較佳實施例中,細胞中產生的寡醣在還原端含有乳-N-雙糖(Gal-b1,3-GlcNAc)或N-乙醯乳糖胺(Gal-b1,4-GlcNAc)。In a preferred embodiment, the disaccharide produced in the cell is lacto-N-disaccharide (Gal-b1,3-GlcNAc) or N-acetyllactosamine (Gal-b1,4-GlcNAc), which in non-reducing The ends contain galactose units linked by β-1,3- or β-1,4-dependent glycosidic linkages, respectively, to the GlcNAc moiety present at the reducing end of the disaccharide. In another preferred embodiment, the oligosaccharide produced in the cell contains lacto-N-disaccharide (Gal-b1,3-GlcNAc) or N-acetyllactosamine (Gal-b1,4-GlcNAc) at the reducing end .
在另一較佳實施例中,根據本發明之由細胞合成的雙醣或寡醣(或本文所述的混合物)在還原端不包括幾丁二糖(即,GlcNAc-b1,4-GlcNAc),更佳為不包括N-聚醣。換句而言,細胞經基因改造以用於產生在還原端具有N-乙醯葡萄糖胺(GlcNAc)單元的雙醣或寡醣(或本文所述的混合物),其中該雙醣或寡醣在還原端不包括幾丁二糖,更佳為不包括N-聚醣。In another preferred embodiment, the cell-synthesized disaccharides or oligosaccharides (or mixtures described herein) according to the present invention do not include chitobiose at the reducing end (ie, GlcNAc-b1,4-GlcNAc) , more preferably excluding N-glycans. In other words, cells are genetically engineered for the production of disaccharides or oligosaccharides (or mixtures described herein) having N-acetylglucosamine (GlcNAc) units at the reducing end, wherein the disaccharides or oligosaccharides are The reducing end does not include chitobiose, more preferably does not include N-glycans.
在另一較佳實施例中,細胞中表現的N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶1)具有PFAM域PF00535,並且(i)包括SEQ ID NO 01的序列[AGPS]XXLN(X n)RXDXD,其中X是任何胺基酸,其中n為12至17、或(ii)包括SEQ ID NO 02的序列PXXLN(X n)RXDXD(X m)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是12至17且m是100至115、或(iii)包括根據SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的多肽序列、或(iv)為SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性、或(v)包括來自SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性、或(vi)為SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性、或(vii)包括多肽,該多肽包括或由具有與SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或2)具有PFAM域IPR002659,並且(i)包括SEQ ID NO 09的序列KT(X n)[FY]XXKXDXD(X m)[FHY]XXG(X,無A、G、S)(X p)X(無F、H、W、Y)[DE]D[ILV]XX[AG],其中X是任何胺基酸,其中n是13至16,m是35至70,且p是20至45、或(ii)包括根據SEQ ID NO:10、11、12或13中的任一的多肽序列、或(iii)為SEQ ID NO:10、11、12或13中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:10、11、12或13的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性、或(iv)包括來自SEQ ID NO:10、11、12或13中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性、或(v)為SEQ ID NO:10、11、12或13中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性、或(vi)包括多肽,該多肽包括或由具有與SEQ ID NO:10、11、12或13中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性。 In another preferred embodiment, the N-acetylglucosamine b-1,3-galactosyltransferase 1) expressed in the cell has the PFAM domain PF00535 and (i) comprises the sequence of SEQ ID NO 01 [AGPS ]XXLN( Xn )RXDXD, wherein X is any amino acid, wherein n is 12 to 17, or (ii) the sequence comprising SEQ ID NO 02 PXXLN( Xn )RXDXD( Xm )[FWY]XX[HKR ]XX[NQST], wherein X is any amino acid, wherein n is 12 to 17 and m is 100 to 115, or (iii) includes according to SEQ ID NO: 03, 04, 05, 06, 07 or 08 Any, preferably any of SEQ ID NOs 03, 04, 05, 06 or 07, more preferably any of SEQ ID NOs 03, 06 or 07, most preferably any of SEQ ID NOs 03 or 06 Any of the polypeptide sequences, or (iv) is any of SEQ ID NOs: 03, 04, 05, 06, 07 or 08, preferably any of SEQ ID NOs 03, 04, 05, 06 or 07 , more preferably any one of SEQ ID NO 03, 06 or 07, most preferably a functional homologue, variant or derivative of any one of SEQ ID NO 03 or 06, which has the same characteristics as SEQ ID NO: Any of 03, 04, 05, 06, 07 or 08, preferably any of SEQ ID NOs 03, 04, 05, 06 or 07, more preferably any of SEQ ID NOs 03, 06 or 07 One, preferably at least 80% overall sequence identity of the full length of the N-acetylglucosamine b-1,3-galactosyltransferase polypeptide of any of SEQ ID NO 03 or 06 and having N-acetyl Glucosamine b-1,3-galactosyltransferase activity, or (v) comprises any one from SEQ ID NOs: 03, 04, 05, 06, 07 or 08, preferably SEQ ID NOs 03, 04 , any one of SEQ ID NO 03, 06 or 07, more preferably any one of SEQ ID NO 03, 06 or 07, most preferably at least 8, 9, 10, 11, Oligopeptide sequences of 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b-1,3-galactosyltransferase activity, Or (vi) is any of SEQ ID NO: 03, 04, 05, 06, 07 or 08, preferably any of SEQ ID NO 03, 04, 05, 06 or 07, more preferably SEQ ID Any of NO 03, 06 or 07, preferably a functional fragment of any of SEQ ID NO 03 or 06, and having N-acetylglucosamine b-1,3-galactose Glycosyltransferase activity, or (vii) comprises a polypeptide comprising or consisting of any of SEQ ID NO: 03, 04, 05, 06, 07 or 08, preferably SEQ ID NO 03, 04, Any of 05, 06 or 07, more preferably any of SEQ ID NOs 03, 06 or 07, and most preferably at least 80% of the full-length amino acid sequence of any of SEQ ID NOs 03 or 06 consisting of an amino acid sequence of identity and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or 2) having a PFAM domain IPR002659, and (i) comprising the sequence of SEQ ID NO 09 KT(X n )[FY]XXKXDXD(X m )[FHY]XXG(X, no A, G, S)(X p )X (no F, H, W, Y)[DE]D[ILV]XX [AG], wherein X is any amino acid, wherein n is 13 to 16, m is 35 to 70, and p is 20 to 45, or (ii) includes according to SEQ ID NO: 10, 11, 12 or 13 A polypeptide sequence of any of, or (iii) a functional homologue, variant or derivative of any of SEQ ID NOs: 10, 11, 12, or 13 having the same properties as SEQ ID NOs: 10, 11 , 12 or 13 of the N-acetylglucosamine b-1,3-galactosyltransferase polypeptides of at least 80% overall sequence identity of any full length and having N-acetylglucosamine b-1,3 - Galactosyltransferase activity, or (iv) comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17 from any of SEQ ID NOs: 10, 11, 12, or 13 , an oligopeptide sequence of 18, 19, 20 consecutive amino acid residues and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or (v) is SEQ ID NO: 10, A functional fragment of any one of 11, 12 or 13, and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or (vi) comprising a polypeptide comprising or consisting of a NO: Consists of amino acid sequences of at least 80% sequence identity to the full-length amino acid sequence of any of 10, 11, 12, or 13, and having N-acetylglucosamine b-1,3-galactose Syltransferase activity.
在另一較佳實施例中,細胞中表現的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶1)具有PFAM域PF01755,並且(i)包括SEQ ID NO 14的序列EXXCXXSHXX[ILV][FWY](X n)EDD(X m)[ACGST]XXYX[ILMV],其中X是任何胺基酸,其中n為13至15且m是50至76、或(ii)包括根據SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的多肽序列、或(iii)為SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(vi)包括來自SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(v)為SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的功能片段,且具有具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(vi)包括多肽,該多肽包括或由具有與SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或2)具有PFAM域PF00535,並且(i)包括SEQ ID NO 24的序列R[KN]XXXXXXXGXXXX[FL]XDXD(X n)[FHW]XXX[FHNY](X m)E[DE],其中X是任何胺基酸,其中n是50至75,m是10至30、或(ii)包括SEQ ID NO 25的序列R[KN]XXXXXXXGXXXXFXDXD(X n)[FHW]XXX[FHNY](X m)E[DE](X p)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是50至75,m是10至30,且p是20至25、或(iii)包括根據SEQ ID NO:26、27或28中的任一的多肽序列、或(iv)為SEQ ID NO:58、59或60中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:26、27或28的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(v)包括來自SEQ ID NO:26、27或28中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(vi)為SEQ ID NO:26、27或28中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(vii)包括多肽,該多肽包括或由具有與SEQ ID NO:26、27或28中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或3)具有PFAM域PF02709且不具有PFAM域PF00535,並且(i)包括SEQ ID NO 29的序列[FWY]XX[FY][FWY](X 23)[FWY][GQ]X[DE]D,其中X是任何胺基酸、或(ii)包括SEQ ID NO 30的序列[PV]W[GHNP](X n)[FWY][GQ]X[DE]D,其中X是任何胺基酸,其中n是21至24、或(iii)包括根據SEQ ID NO:31、32、33、34、35或36中的任一的多肽序列、或(iv)為SEQ ID NO:31、32、33、34、35或36中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:31、32、33、34、35或36的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(v)包括來自SEQ ID NO:31、32、33、34、35或36中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(vi)為SEQ ID NO:31、32、33、34、35或36中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(vii)包括多肽,該多肽包括或由具有與SEQ ID NO:31、32、33、34、35或36中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或4)具有PFAM域PF03808,並且(i)包括SEQ ID NO 37的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA,其中X是任何胺基酸,且其中n是20至25、或(ii)包括SEQ ID NO 38的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA(X m)[HR]XG[FWY](X p)GXGXXXQ[DE],其中X是任何胺基酸,其中n是20至25,m是40至50,且p是22至30、或(iii)包括根據SEQ ID NO:39、40或41中的任一的多肽序列、或(iv)為SEQ ID NO:39、40或41中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:39、40或41的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(v)包括來自SEQ ID NO:39、40或41中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(vi)為SEQ ID NO:39、40或41中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性、或(vii)包括多肽,該多肽包括或由具有與SEQ ID NO:39、40或41中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性。 [ ILV][FWY]( Xn )EDD( Xm )[ACGST]XXYX[ILMV], wherein X is any amino acid, wherein n is 13 to 15 and m is 50 to 76, or (ii) including according to SEQ Any of ID NO: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably any of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably is the polypeptide sequence of any of SEQ ID NO: 17, 18, 20 or 21, or (iii) is any of SEQ ID NO: 15, 16, 17, 18, 19, 20, 21, 22 or 23 , preferably any of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably a functional homologue, variant of any of SEQ ID NO: 17, 18, 20 or 21 A body or derivative with any of SEQ ID NO: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably SEQ ID NO: 15, 16, 17, 18, 20 or any of 21, more preferably at least 80% of the full length of the N-acetylglucosamine b-1,4-galactosyltransferase polypeptide of any of SEQ ID NO: 17, 18, 20 or 21 Overall sequence identity and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or (vi) including from SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22 or any of 23, preferably any of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably at least any of SEQ ID NO: 17, 18, 20 or 21 Oligopeptide sequences of 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues, and N-acetylglucosamine b-1,4- Galactosyltransferase activity, or (v) is any of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably SEQ ID NOs: 15, 16, 17 , any of 18, 20 or 21, more preferably a functional fragment of any of SEQ ID NO: 17, 18, 20 or 21, and having N-acetylglucosamine b-1,4-galactose Syltransferase activity, or (vi) comprising a polypeptide comprising or consisting of any of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably SEQ ID NO: 15, 16, 17, 18, 20 or any of 21, more preferably an amino acid sequence of at least 80% sequence identity to the full-length amino acid sequence of any of SEQ ID NO: 17, 18, 20 or 21, and has N- Acetylglucosamine b-1,4-galactosyltransferase activity, or 2) has a PFAM domain PF00535, and (i) comprises the sequence of SEQ ID NO 24 R[KN]XXXXXXXXGXXXX[FL]XDXD( Xn )[ FHW]XXX[FHNY](X m )E[DE], wherein X is any amino acid, wherein n is 50 to 75, m is 10 to 30, or (ii) the sequence R[KN comprising SEQ ID NO 25 ]XXXXXXGXXXXFXDXD(X n )[FHW]XXX[FHNY](X m )E[DE](X p )[FWY]XX[HKR]XX[NQST], where X is any amino acid, where n is 50 to 75, m is 10 to 30, and p is 20 to 25, or (iii) comprises a polypeptide sequence according to any of SEQ ID NOs: 26, 27 or 28, or (iv) is SEQ ID NOs: 58, 59 or a functional homologue, variant or derivative of any of 60 having the N-acetylglucosamine b-1,4-galactosyltransferase of SEQ ID NO: 26, 27 or 28 Any one of the full-length polypeptides has at least 80% overall sequence identity and has N-acetylglucosamine b-1 ,4-galactosyltransferase activity, or (v) comprises a sequence from SEQ ID NO: 26, 27 or 28 An oligopeptide sequence of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues of any of the Amine b-1,4-galactosyltransferase activity, or (vi) is a functional fragment of any of SEQ ID NOs: 26, 27, or 28, and has N-acetylglucosamine b-1,4- Galactosyltransferase activity, or (vii) comprising a polypeptide comprising or consisting of an amino group having at least 80% sequence identity to the full-length amino acid sequence of any of SEQ ID NOs: 26, 27 or 28 consisting of an acid sequence and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or 3) having a PFAM domain PF02709 and not having a PFAM domain PF00535, and (i) comprising SEQ ID NO 29 The sequence [FWY]XX[FY][FWY]( X23 )[FWY][GQ]X[DE]D, where X is any amino acid, or (ii) the sequence [PV]W comprising SEQ ID NO 30 [GHNP]( Xn )[FWY][GQ]X[DE]D, wherein X is any amino acid, wherein n is 21 to 24, or (iii) including according to SEQ ID NO: A polypeptide sequence of any of 31, 32, 33, 34, 35 or 36, or (iv) a functional homologue of any of SEQ ID NO: 31, 32, 33, 34, 35 or 36, A variant or derivative having a full-length sequence with any of the N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of SEQ ID NO: 31, 32, 33, 34, 35 or 36 At least 80% overall sequence identity and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or (v) including from SEQ ID NO: 31, 32, 33, 34, 35 or 36 Any oligopeptide sequence of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b-1,4-galactosyltransferase activity, or (vi) is a functional fragment of any one of SEQ ID NOs: 31, 32, 33, 34, 35, or 36, and has N-acetylglucosamine b -1,4-galactosyltransferase activity, or (vii) comprising a polypeptide comprising or consisting of a full-length amino acid with any of SEQ ID NO: 31, 32, 33, 34, 35 or 36 The sequence consists of amino acid sequences of at least 80% sequence identity and has N-acetylglucosamine b-1,4-galactosyltransferase activity, or 4) has the PFAM domain PF03808, and (i) includes Sequence of SEQ ID NO 37 [ST][FHY]XN( Xn )DG(X16)[HKR]X[ST] FDXX [ST]XA, wherein X is any amino acid, and wherein n is 20 to 25 , or (ii) the sequence comprising SEQ ID NO 38 [ST][FHY]XN( Xn )DG(X16)[HKR]X[ST] FDXX [ST]XA( Xm )[HR]XG[FWY ](X p )GXGXXXQ[DE], wherein X is any amino acid, wherein n is 20 to 25, m is 40 to 50, and p is 22 to 30, or (iii) includes according to SEQ ID NO:39, The polypeptide sequence of any one of 40 or 41, or (iv) a functional homologue, variant or derivative of any one of SEQ ID NO: 39, 40 or 41 having the same properties as SEQ ID NO: 39 , 40 or 41 of the N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of either full-length at least 80% overall sequence identity and having N-acetylglucosamine b-1,4 - Galactosyltransferase activity, or (v) comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 from any of SEQ ID NOs: 39, 40 or 41 , 19, 20 oligopeptide sequences of consecutive amino acid residues with N-acetylglucosamine b-1,4- Galactosyltransferase activity, or (vi) is a functional fragment of any one of SEQ ID NOs: 39, 40 or 41 and has N-acetylglucosamine b-1,4-galactosyltransferase activity, or (vii) comprising a polypeptide comprising or consisting of an amino acid sequence having at least 80% sequence identity to the full-length amino acid sequence of any of SEQ ID NOs: 39, 40 or 41, and having N-acetylglucosamine b-1,4-galactosyltransferase activity.
本文使用的PFAM模體,PF00535、IPR002659、PF01755、PF02709、PF03808是2020年6月11日發佈的PFAM資料庫Pfam 33.1版本中註釋的蛋白質域。PF00535屬於醣基轉移酶2(GT2)家族,該家族包括將來自UDP-葡萄糖、UDP-N-乙醯基-半乳糖胺、GDP-甘露糖或CDP-阿比可糖(CDP-abequose)的糖轉移到一系列接受者(包括纖維素、多萜醇磷酸(dolichol phosphate)及磷壁酸)的酶。The PFAM motifs used in this paper, PF00535, IPR002659, PF01755, PF02709, and PF03808 are protein domains annotated in the PFAM database Pfam version 33.1 released on June 11, 2020. PF00535 belongs to the glycosyltransferase 2 (GT2) family, which includes the conversion of enzymes from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose Enzymes that transfer sugars to a range of recipients, including cellulose, dolichol phosphate, and teichoic acid.
IPR002659屬於醣基轉移酶家族31(GH31),該家族包括具有許多已知活性的酶,包括N-乙醯乳糖胺β-1,3-N-乙醯基葡糖胺轉移酶(N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase)(2.4.1.149)、β-1,3-半乳糖基轉移酶(2.4.1),岩藻糖特異性β-1,3-N-乙醯基葡糖胺轉移酶(2.4.1)、醯基鞘鞍醇三己糖β-1,3-GalNAc轉移酶(globotriosylceramide β-1,3-GalNAc transferase)(2.4.1.79)。PF01755屬於醣基轉移酶25(GT25)家族。此為參與脂多醣(LPS)的生物合成的醣基轉移酶家族。這些酶在生物合成過程中催化各種糖類轉移到生長中的LPS鏈上。PF02709是指Glyco_transf_7C家族。此為來自廣泛的後生動物(Metazoa)的半乳糖基轉移酶家族的N端域,其具有三種相關的半乳糖基轉移酶活性,在某些情況下,這三種活性都是由一個序列所擁有:EC:2.4.1.90,N-乙醯乳糖胺合成酶、EC:2.4.1.38,β-N-乙醯基葡糖胺-醣肽β-1,4-半乳糖基轉移酶,以及EC:2.4.1.22乳糖合成酶。PF03808是指醣基轉移酶26(GT26)家族,該家族包括具有如β-N-乙醯基甘露糖胺糖醛酸基轉移酶(β-N-acetyl mannosaminuronyltransferase)(EC 2.4.1.-)、β-N-乙醯-甘露糖胺基轉移酶(β-N-acetyl-mannosaminyltransferase)(EC 2.4.1.-)、β-1,4-葡萄糖基轉移酶(EC 2.4.1.-)和β-1,4-半乳糖基轉移酶(EC 2.4.1.-)等活性的酶。IPR002659 belongs to glycosyltransferase family 31 (GH31), which includes enzymes with a number of known activities, including N-acetyllactosamine beta-1,3-N-acetyllactosamine transferase beta-1,3-N-acetylglucosaminyltransferase) (2.4.1.149), beta-1,3-galactosyltransferase (2.4.1), fucose-specific beta-1,3-N-acetylglucosylglucose Glycosaminotransferase (2.4.1), globotriosylceramide β-1,3-GalNAc transferase (2.4.1.79). PF01755 belongs to the glycosyltransferase 25 (GT25) family. This is a family of glycosyltransferases involved in the biosynthesis of lipopolysaccharide (LPS). These enzymes catalyze the transfer of various sugars to growing LPS chains during biosynthesis. PF02709 refers to the Glyco_transf_7C family. This is the N-terminal domain of a family of galactosyltransferases from the broad metazoa (Metazoa), which have three related galactosyltransferase activities, in some cases all possessed by a single sequence : EC: 2.4.1.90, N-acetyllactosamine synthase, EC: 2.4.1.38, β-N-acetylglucosamine-glycopeptide β-1,4-galactosyltransferase, and EC: 2.4.1.22 Lactose synthase. PF03808 refers to the glycosyltransferase 26 (GT26) family, which includes enzymes such as β-N-acetyl mannosaminuronyltransferase (EC 2.4.1.-) , β-N-acetyl-mannosaminyltransferase (β-N-acetyl-mannosaminyltransferase) (EC 2.4.1.-), β-1,4-glucosyltransferase (EC 2.4.1.-) and β-1,4-galactosyltransferase (EC 2.4.1.-) and other active enzymes.
具有與該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶或該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶的各類指定的相同PFAM域和模體的蛋白質可以經由RegEx分析進行檢索。Has the same PFAM domain and motif as assigned to each class of the N-acetylglucosamine b-1,3-galactosyltransferase or the N-acetylglucosamine b-1,4-galactosyltransferase The proteins can be retrieved via RegEx analysis.
RegEx或稱正規表示式(Regular Expression)特殊的字符序列,其使用模式中的專門語法,幫助配對或搜尋其他字串或字串集。許多程序都可用以進行RegEx檢索。其中一個是Python模組「re」,其提供了對Python中正規表示式的全面支援。詳細訊息,以及所屬技術領域中具通常知識者已知的訊息可得自2019年4月6日發佈的https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2。用於所述發明的蛋白質的RegEx分析已經包括在本文的實施例部分。RegEx, or Regular Expression, is a special sequence of characters that uses a special syntax in a pattern to help pair or search other strings or sets of strings. Many programs are available for RegEx searches. One of them is the Python module "re", which provides full support for regular expressions in Python. Detailed information, as well as information known to those of ordinary skill in the art, can be obtained from https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2 published on April 6, 2019 . RegEx analysis for the proteins of the invention has been included in the Examples section herein.
醣基轉移酶家族是一個非常廣泛的酶家族,能夠催化以將糖部分從活化的供給者分子轉移到特定的接受者分子,以形成醣苷鍵。已描述使用核苷酸二磷酸糖(nucleotide diphospho-sugar)、核苷酸單磷酸糖(nucleotide monophospho-sugar)和糖磷酸鹽(sugar phosphates)及相關蛋白的醣基轉移酶分類成基於序列的不同家族(Campbell et al., Biochem. J. 326, 929-939 (1997)),並可得自CAZy(CArbohydrat-Active EnZymes)網站(www.cazy.org)。The glycosyltransferase family is a very broad family of enzymes capable of catalyzing the transfer of sugar moieties from activated donor molecules to specific acceptor molecules to form glycosidic bonds. Glycosyltransferases using nucleotide diphospho-sugars, nucleotide monophospho-sugars, and sugar phosphates and related proteins have been described and classified into different sequence-based family (Campbell et al., Biochem. J. 326, 929-939 (1997)) and available from the CAZy (CArbohydrat-Active EnZymes) website (www.cazy.org).
在另一較佳實施例中,該N-乙醯葡萄糖胺-6-磷酸轉移酶由異源核酸編碼。換句而言,該N-乙醯葡萄糖胺-6-磷酸轉移酶在該細胞中異源地表現。在另一較佳實施例中,該N-乙醯葡萄糖胺-6-磷酸轉移酶(i)包括,較佳為來自啤酒酵母菌的具有UniProt ID P43577的多肽序列,或(ii)為具有UniProt ID P43577的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P43577的多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺-6-磷酸轉移酶活性、或(iii)為具有UniProt ID P43577的多肽的功能片段,並具有N-乙醯葡萄糖胺-6-磷酸轉移酶的活性、或(iv)包括或由胺基酸序列組成的多肽,該胺基酸序列具有與UniProt ID P43577的多肽全長胺基酸序列的至少80%的序列同一性,並具有N-乙醯葡萄糖胺-6-磷酸轉移酶活性。在另一較佳實施例中,該L-麩醯胺—D-果糖-6-磷酸轉胺酶(i)包括,較佳為來自大腸桿菌的UniProt ID P17169的多肽序列、或(ii)為具有UniProt ID P17169的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P17169的多肽全長的至少80%整體序列同一性,且具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性、或(iii)為具有UniProt ID P17169的多肽之功能片段,且具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性、或(iv)包括或由胺基酸序列組成的多肽,該胺基酸序列具有與UniProt ID P17169的多肽全長胺基酸序列的至少80%的序列同一性,並具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性。在替代性較佳實施例中,該L-麩醯胺—D-果糖-6-磷酸轉胺酶(i)包括,較佳為與UniProt ID P17169的野生型大腸桿菌蛋白不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006))的多肽序列、或(ii)為該突變多肽(與UniProt ID P17169的野生型大腸桿菌蛋白不同之處在於具有A39T、R250C和G472S突變)的功能性同源物、變體或衍生物,其具有與該突變多肽(與UniProt ID P17169的野生型大腸桿菌蛋白不同之處在於具有A39T、R250C和G472S突變)全長的至少80%整體序列同一性,並具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性、或(iii)為該突變多肽(與UniProt ID P17169的野生型大腸桿菌蛋白不同之處在於具有A39T、R250C和G472S突變)的功能片段,並具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性、或(iv)包括或由胺基酸序列組成的多肽,該胺基酸序列具有與該突變多肽(與UniProt ID P17169的野生型大腸桿菌蛋白不同之處在於具有A39T、R250C和G472S突變)全長胺基酸序列的至少80%的序列同一性,並具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性。In another preferred embodiment, the N-acetylglucosamine-6-phosphotransferase is encoded by a heterologous nucleic acid. In other words, the N-acetylglucosamine-6-phosphotransferase is expressed heterologously in the cell. In another preferred embodiment, the N-acetylglucosamine-6-phosphotransferase (i) comprises, preferably a polypeptide sequence from Saccharomyces cerevisiae with UniProt ID P43577, or (ii) is a UniProt A functional homologue, variant or derivative of the polypeptide of ID P43577 having at least 80% overall sequence identity to the full length of the polypeptide of UniProt ID P43577 and having N-acetylglucosamine-6-phosphotransferase activity, or (iii) is a functional fragment of a polypeptide having UniProt ID P43577 and has N-acetylglucosamine-6-phosphotransferase activity, or (iv) a polypeptide comprising or consisting of an amino acid sequence, the amino The acid sequence has at least 80% sequence identity to the full-length amino acid sequence of the polypeptide of UniProt ID P43577 and has N-acetylglucosamine-6-phosphotransferase activity. In another preferred embodiment, the L-glutamine-D-fructose-6-phosphate transaminase (i) comprises, preferably the polypeptide sequence of UniProt ID P17169 from Escherichia coli, or (ii) is Functional homologues, variants or derivatives of the polypeptide with UniProt ID P17169 having at least 80% overall sequence identity with the full length of the polypeptide of UniProt ID P17169 and having L-glutamine-D-fructose-6 - Phosphotransaminase activity, or (iii) is a functional fragment of a polypeptide having UniProt ID P17169 and has L-glutamine-D-fructose-6-phosphate transaminase activity, or (iv) includes or consists of amines Polypeptide composed of amino acid sequence, the amino acid sequence has at least 80% sequence identity with the full-length amino acid sequence of the polypeptide of UniProt ID P17169, and has L-glutamine-D-fructose-6-phosphate transamination enzymatic activity. In an alternative preferred embodiment, the L-glutamine-D-fructose-6-phosphate transaminase (i) comprises, preferably differs from the wild-type E. coli protein of UniProt ID P17169 by having A39T , R250C and G472S mutations, the polypeptide sequence as described by Deng et al. (Biochimie 88, 419-29 (2006)), or (ii) the mutant polypeptide (different from the wild-type E. coli protein of UniProt ID P17169 in that A functional homologue, variant or derivative having the A39T, R250C and G472S mutations) that has the same mutant polypeptide (which differs from the wild-type E. coli protein of UniProt ID P17169 by having the A39T, R250C and G472S mutations) At least 80% overall sequence identity to the full length and having L-glutamine-D-fructose-6-phosphate transaminase activity, or (iii) being the mutant polypeptide (different from the wild-type E. coli protein of UniProt ID P17169) in that it has a functional fragment of A39T, R250C and G472S mutations) and has L-glutamine-D-fructose-6-phosphate transaminase activity, or (iv) a polypeptide comprising or consisting of an amino acid sequence, The amino acid sequence has at least 80% sequence identity to the full-length amino acid sequence of the mutant polypeptide (which differs from the wild-type E. coli protein of UniProt ID P17169 by having the A39T, R250C and G472S mutations) and has L - Glutamine-D-fructose-6-phosphate transaminase activity.
整體序列同一性是使用全局比對演算法(global alignment algorithm)確定,例如程式GAP(GCG Wisconsin Package, Accelrys)中的Needleman Wunsch演算法,較佳使用預設參數,且較佳使用成熟蛋白質的序列(即,不考慮分泌訊號或轉運肽)。與整體序列同一性相比,當只考慮保守域或模體時,序列同一性通常會更高。Global sequence identity is determined using a global alignment algorithm, such as the Needleman Wunsch algorithm in the program GAP (GCG Wisconsin Package, Accelrys), preferably using preset parameters, and preferably using mature protein sequences (ie, without regard to secretion signals or transit peptides). Sequence identity is usually higher when only conserved domains or motifs are considered compared to overall sequence identity.
與SEQ ID NO:03、04、05、06、07、08、10、11、12、13、15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40或41的多肽、或者UniProt ID P43577或P17169、或者與UniProt ID P17169不同的A39T、R250C和G472S突變的該突變多肽中的任一全長的至少80%整體序列同一性應理解分別為與SEQ ID NO:03、04、05、06、07、08、10、11、12、13、15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40或41的多肽、或者UniProt ID P43577或P17169、或者與UniProt ID P17169不同的A39T、R250C和G472S突變的該突變多肽中的任一的至少80 %、81 %、82 %、83 %、84 %、85 %、86 %、87 %、88 %、89 %、90 %、91 %、92 %、93 %、94 %、95 %、96 %、97 %、98 %或99 %整體序列同一性,如本文所述。來自SEQ ID NO:03、04、05、06、07、08、10、11、12、13、15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40或41的多肽、或者UniProt ID P43577或P17169、或者與UniProt ID P17169不同的A39T、R250C和G472S突變的該突變多肽中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列應理解分別為連續胺基酸殘基的至少8、9、10、11、12、13、14、15、16、17、18、19個胺基酸殘基總數以內的寡肽序列中的任一,該連續胺基酸殘基來自SEQ ID NO:03、04、05、06、07、08、10、11、12、13、15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40或41的多肽、或者UniProt ID P43577或P17169、或者與UniProt ID P17169不同的A39T、R250C和G472S突變的該突變多肽中的任一,較佳其中該寡肽不與PFAM域完全重疊(如果存在),更佳其中該寡肽不與PFAM域重疊(如果存在)。with SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 31 , 32, 33, 34, 35, 36, 39, 40, or 41, or UniProt ID P43577 or P17169, or at least any full-length of any of the mutated polypeptides of A39T, R250C, and G472S different from UniProt ID P17169 80% overall sequence identity is to be understood as with SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, respectively , 23, 26, 27, 28, 31, 32, 33, 34, 35, 36, 39, 40, or 41, or UniProt ID P43577 or P17169, or A39T, R250C, and G472S mutations different from UniProt ID P17169 At least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93% of any of the mutant polypeptides , 94%, 95%, 96%, 97%, 98% or 99% overall sequence identity, as described herein. From SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 31 , 32, 33, 34, 35, 36, 39, 40 or 41, or UniProt ID P43577 or P17169, or at least 8 of any of the mutated polypeptides of any of the A39T, R250C and G472S mutations different from UniProt ID P17169 , 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 oligopeptide sequences of consecutive amino acid residues should be understood as at least 8, 9 of consecutive amino acid residues, respectively , 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 any of the oligopeptide sequences within the total number of amino acid residues from SEQ ID NO: 03 , 04, 05, 06, 07, 08, 10, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 31, 32, 33, 34 , 35, 36, 39, 40 or 41, or UniProt ID P43577 or P17169, or any of the mutant polypeptides of the A39T, R250C and G472S mutations different from UniProt ID P17169, preferably wherein the oligopeptide does not interact with The PFAM domains completely overlap (if present), preferably wherein the oligopeptide does not overlap the PFAM domains (if present).
在本發明的方法及/或細胞的較佳實施例中,該細胞能夠分解代謝選自包括以下列表的碳源:葡萄糖、果糖、半乳糖、乳糖、蔗糖、麥芽糖、麥芽-寡醣(malto-oligosaccharides)、麥芽三糖(maltotriose)、山梨醇、木糖、鼠李糖、甘露糖、甲醇、乙醇、阿拉伯糖、海藻糖(trehalose)、澱粉、纖維素、半纖維素、糖蜜(molasses)、玉米浸液(corn-steep liquor)、高果糖漿、甘油、乙酸鹽、檸檬酸鹽、乳酸、丙酮酸。In preferred embodiments of the method and/or cell of the present invention, the cell is capable of catabolizing carbon sources selected from the group consisting of glucose, fructose, galactose, lactose, sucrose, maltose, malto-oligosaccharide (malto-oligosaccharide) -oligosaccharides), maltotriose (maltotriose), sorbitol, xylose, rhamnose, mannose, methanol, ethanol, arabinose, trehalose (trehalose), starch, cellulose, hemicellulose, molasses ), corn-steep liquor, high fructose syrup, glycerin, acetate, citrate, lactic acid, pyruvic acid.
在本發明的方法及/或細胞的較佳實施例中,細胞在醣化反應中使用乳糖以產生寡醣,較佳為本文所述的基於乳糖的MMO。乳糖可以由細胞產生(例如,藉由細胞的代謝及/或如所屬技術領域中具通常知識者所知的為此目的對細胞進行代謝工程後產生),較佳在細胞內產生,或者可添加到細胞中,該細胞可以通過被動或主動運輸引入該乳糖。由細胞產生乳糖可藉由N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶和UDP-葡萄糖4-表異構酶的表現而獲得。更佳地,該細胞被修飾以促進乳糖產生。該修飾可為選自包括過度表現N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶、過度表現UDP-葡萄糖4-表異構酶的群組的一或多種。In preferred embodiments of the methods and/or cells of the present invention, the cells use lactose in a saccharification reaction to produce oligosaccharides, preferably the lactose-based MMOs described herein. Lactose can be produced by cells (eg, by metabolism of cells and/or after metabolic engineering of cells for this purpose as known to those of ordinary skill in the art), preferably intracellularly, or can be added into cells, which can introduce the lactose by passive or active transport. The production of lactose by cells can be obtained by the expression of N-acetylglucosamine β-1,4-galactosyltransferase and UDP-glucose 4-epimerase. More preferably, the cells are modified to promote lactose production. The modification may be one or more selected from the group consisting of overexpressing N-acetylglucosamine beta-1,4-galactosyltransferase, overexpressing UDP-glucose 4-epimerase.
在本發明的方法及/或細胞的較佳實施例中,在醣化反應中使用乳糖作為接受者的細胞較佳具有從培養物中攝取乳糖的轉運體。更佳地,該細胞為攝取乳糖而進行優化。該優化可以是過度表現乳糖轉運體,如大腸桿菌或乳酸克魯維酵母( Kluyveromyces lactis)的乳糖通透酶。較佳地,細胞持續表現乳糖通透酶。乳糖可以在培養開始時添加,也可以在培養的生長階段形成足夠的生質後立即添加,亦即,藉由向培養物中添加乳糖而起始的基於乳糖的MMO產生階段是與生長階段分開(decoupled)。在較佳實施例中,乳糖是在開始及/或在培養過程中添加的,亦即,生長階段和產生階段沒有分開。 In preferred embodiments of the methods and/or cells of the present invention, cells using lactose as a recipient in the saccharification reaction preferably have transporters for uptake of lactose from culture. More preferably, the cells are optimized for uptake of lactose. The optimization may be to overexpress a lactose transporter, such as the lactose permease of E. coli or Kluyveromyces lactis . Preferably, the cells continue to express lactose permease. Lactose can be added at the beginning of the culture or immediately after sufficient biomass is formed during the growth phase of the culture, i.e., the lactose-based MMO production phase initiated by adding lactose to the culture is separate from the growth phase. (decoupled). In a preferred embodiment, lactose is added at the beginning and/or during the culturing process, ie, the growth phase and the production phase are not separated.
在根據本發明的方法及/或細胞的較佳實施例中,當細胞在乳糖與一或多種其他碳源結合的環境中生長時,細胞抵抗乳糖殺傷現象。用與「乳糖殺傷(lactose killing)」是指細胞在乳糖與其他碳源一起存在的培養基中的生長受阻。在較佳實施例中,細胞經基因改造,使其保留至少50%的乳糖流入而不發生乳糖殺傷,即使在高乳糖濃度下也是如此,如WO 2016/075243所述。該基因修飾包括藉由不導致乳糖殺傷表型的異源啟動子表現及/或過度表現外源及/或內源乳糖轉運體基因及/或修飾乳糖轉運體的密碼子用法,以產生不導致乳糖殺傷表型的該乳糖轉運體的改變表現。WO 2016/075243的內容於此方面併入作為參照。In preferred embodiments of the methods and/or cells according to the present invention, the cells are resistant to the phenomenon of lactose killing when the cells are grown in an environment in which lactose is combined with one or more other carbon sources. The term "lactose killing" refers to the arrest of cell growth in a medium in which lactose is present along with other carbon sources. In a preferred embodiment, the cells are genetically engineered to retain at least 50% of the lactose influx without lactose killing, even at high lactose concentrations, as described in WO 2016/075243. The genetic modification includes expression and/or overexpression of exogenous and/or endogenous lactose transporter genes by a heterologous promoter that does not result in a lactose-killing phenotype and/or modification of the codon usage of the lactose transporter to produce a Altered manifestations of the lactose transporter of the lactose-killing phenotype. The contents of WO 2016/075243 are incorporated by reference in this regard.
在本發明的進一步實施例中,果糖-6-磷酸鹽是L-麩醯胺—D-果糖-6-磷酸轉胺酶的基質,該L-麩醯胺—D-果糖-6-磷酸轉胺酶在細胞中表現且能夠將果糖-6-磷酸鹽轉換為葡萄糖胺-6-磷酸鹽,作為合成GlcNAc的前驅物。葡萄糖胺-6-磷酸鹽是N-乙醯葡萄糖胺-6-磷酸轉移酶的基質,該N-乙醯葡萄糖胺-6-磷酸轉移酶在細胞內表現,能夠將葡萄糖胺-6-磷酸鹽轉換為N-乙醯葡萄糖胺-6-磷酸鹽。N-乙醯葡萄糖胺-6-磷酸鹽是磷酸酶的基質,該磷酸酶在細胞中表現,能夠將N-乙醯葡萄糖胺-6-磷酸鹽去磷酸化以合成單醣GlcNAc。In a further embodiment of the invention, fructose-6-phosphate is the substrate for L-glutamine-D-fructose-6-phosphate transaminase, the L-glutamine-D-fructose-6-phosphate transaminase Aminases are expressed in cells and are able to convert fructose-6-phosphate to glucosamine-6-phosphate as a precursor for the synthesis of GlcNAc. Glucosamine-6-phosphate is a substrate for N-acetylglucosamine-6-phosphotransferase, which is expressed intracellularly and is capable of converting glucosamine-6-phosphate Converted to N-acetylglucosamine-6-phosphate. N-acetylglucosamine-6-phosphate is a substrate for the phosphatase, which is expressed in cells, capable of dephosphorylating N-acetylglucosamine-6-phosphate to synthesize the monosaccharide GlcNAc.
在另一較佳實施例中,該細胞無法將N-乙醯葡萄糖胺-6-磷酸鹽轉換成葡萄糖胺-6-磷酸鹽,及/或無法將葡萄糖胺-6-磷酸鹽轉換成果糖-6-磷酸鹽。在細胞中,N-乙醯葡萄糖胺-6-磷酸鹽可藉由N-乙醯葡萄糖胺-6-磷酸鹽去乙醯酶(如nagA)的活性轉換成葡萄糖胺-6-磷酸鹽,且葡萄糖胺-6-磷酸鹽可藉由葡萄糖胺-6-磷酸鹽脫胺酶(如nagB)的活性轉換成果糖-6-磷酸鹽。如此的N-乙醯葡萄糖胺-6-磷酸鹽去乙醯酶及/或葡萄糖胺-6-磷酸鹽脫胺酶可藉由所屬技術領域中具通常知識者已知的方法使編碼編碼序列的對應多核苷酸的突變誘發或部分或完全缺失、或控制對應編碼多核苷酸表現的啟動子序列的突變誘發而獲得減少的表現或減少的活性或被去活性。In another preferred embodiment, the cell is incapable of converting N-acetylglucosamine-6-phosphate to glucosamine-6-phosphate, and/or incapable of converting glucosamine-6-phosphate to fructose- 6-Phosphate. In cells, N-acetylglucosamine-6-phosphate can be converted to glucosamine-6-phosphate by the activity of N-acetylglucosamine-6-phosphate deacetylases such as nagA, and Glucosamine-6-phosphate can be converted to fructose-6-phosphate by the activity of glucosamine-6-phosphate deaminase (eg nagB). Such N-acetylglucosamine-6-phosphate deacetylase and/or glucosamine-6-phosphate deaminase can be encoded by methods known to those of ordinary skill in the art. Mutagenesis or partial or complete deletion of the corresponding polynucleotide, or mutagenesis of a promoter sequence that controls the expression of the corresponding polynucleotide, results in reduced expression or reduced activity or is deactivated.
在一實施例中,細胞能夠合成核苷酸-糖GDP-岩藻糖。GDP-岩藻糖可藉由在細胞中表現的酶或藉由細胞的代謝而提供。此合成GDP-岩藻糖的細胞可表現將例如添加至細胞的岩藻糖轉換成GDP-岩藻糖的酶。此酶可例如為雙官能岩藻糖激酶/岩藻糖-1-磷酸鹽鳥苷酸轉移酶(guanylyltransferase),如來自脆弱擬桿菌( Bacteroides fragilis)的Fkp、或一種獨立的岩藻糖激酶與一種獨立的岩藻糖-1-磷酸鹽鳥苷酸轉移酶的組合,其該些酶已知來自包括智人( Homo sapiens)、豬( Sus scrofa)及褐鼠( Rattus norvegicus)的幾個物種。 In one embodiment, the cell is capable of synthesizing the nucleotide-sugar GDP-fucose. GDP-fucose can be provided by enzymes expressed in cells or by metabolism of cells. This GDP-fucose-synthesizing cell may express an enzyme that converts, for example, fucose added to the cell to GDP-fucose. This enzyme can be, for example, a bifunctional fucose kinase/fucose-1-phosphate guanylyltransferase, such as Fkp from Bacteroides fragilis , or an independent fucose kinase with A combination of independent fucose-1-phosphate guanylate transferase enzymes known from several species including Homo sapiens , Sus scrofa and Rattus norvegicus .
較佳地,該細胞經修飾以產生GDP-岩藻糖。Preferably, the cells are modified to produce GDP-fucose.
更佳地,該細胞經修飾以促進GDP-岩藻糖產生。該修飾可選擇自包括UDP-葡萄糖:十一異戊二烯(undecaprenyl)-磷酸葡萄糖-1-磷酸轉移酶編碼基因的剃除(knock-out)、GDP-L-岩藻糖合成酶編碼基因的過度表現、GDP-甘露糖4,6-脫水酶編碼基因的過度表現、甘露糖-1-磷酸鹽鳥苷酸轉移酶編碼基因的過度表現、磷酸甘露糖變位酶(phosphomannomutase)編碼基因的過度表現、以及甘露糖-6-磷酸鹽異構酶編碼基因的過度表現之群組中的一或多種。More preferably, the cells are modified to promote GDP-fucose production. The modification can be selected from the group consisting of UDP-glucose: undecaprenyl-undecaprenyl-phosphoglucose-1-phosphotransferase-encoding gene knock-out, GDP-L-fucose synthase encoding gene overexpression of genes encoding GDP-mannose 4,6-dehydratase, overexpression of genes encoding mannose-1-phosphate guanylate transferase, overexpression of genes encoding phosphomannose mutase (phosphomannomutase) One or more of the group of overexpression, and overexpression of a gene encoding mannose-6-phosphate isomerase.
在一實施例中,該細胞能夠合成核苷酸-糖UDP-半乳糖。UDP-半乳糖可藉由在細胞中表現的酶或藉由細胞的代謝而提供。較佳地,該細胞經修飾以合成UDP-半乳糖。更佳地,該細胞經修飾以促進UDP-半乳糖產生。該修飾可選擇自包括5'-核苷酸酶/UDP-糖水解酶(5'-nucleotidase / UDP-sugar hydrolase)編碼基因的剃除、半乳糖-1-磷酸鹽尿苷醯轉移酶(galactose-1-phosphate uridylyltransferase)編碼基因的剃除以及UDP-半乳糖4-表異構酶(如,galE)的過度表現之群組中的一或多種。In one embodiment, the cell is capable of synthesizing the nucleotide-sugar UDP-galactose. UDP-galactose can be provided by enzymes expressed in cells or by metabolism of cells. Preferably, the cells are modified to synthesize UDP-galactose. More preferably, the cells are modified to promote UDP-galactose production. The modification can be selected from shaving, galactose-1-phosphate uridine transferase (galactose -1-phosphate uridylyltransferase) encoding gene shaving and one or more of the group of overexpression of UDP-galactose 4-epimerase (eg, galE).
在一實施例中,該細胞能夠合成核苷酸-糖CMP-N-乙醯基神經胺酸(CMP-唾液酸)。CMP-N-乙醯基神經胺酸可藉由在細胞中表現的酶或藉由細胞的代謝而提供。較佳地,該細胞經修飾以合成CMP-N-乙醯基神經胺酸。更佳地,該細胞經修飾以促進CMP-N-乙醯基神經胺酸產生。該修飾可選擇自CMP-唾液酸合成酶編碼基因的過度表現、唾液酸(sialate)合成酶編碼基因的過度表現、以及N-乙醯基-D-葡萄糖胺2-表異構酶編碼基因的過度表現之群組中的一或多種。In one example, the cell is capable of synthesizing the nucleotide-sugar CMP-N-acetylneuraminic acid (CMP-sialic acid). CMP-N-acetylneuraminic acid can be provided by enzymes expressed in cells or by metabolism of cells. Preferably, the cells are modified to synthesize CMP-N-acetylneuraminic acid. More preferably, the cells are modified to promote CMP-N-acetylneuraminic acid production. The modification can be selected from overexpression of a gene encoding CMP-sialate synthase, overexpression of a gene encoding sialate synthase, and overexpression of a gene encoding N-acetyl-D-glucosamine 2-epimerase One or more of the over-performing groups.
CMP-N-乙醯基神經胺酸的合成使用GlcNAc,但如本文所述的細胞中的GlcNAc用於還原端具有GlcNAc單元的雙醣或寡醣的合成。因此,細胞中CMP-N-乙醯基神經胺酸的產生可能會降低可用於產生感興趣的生物產品的GlcNAc,亦即,在還原端具有GlcNAc單元的雙醣或寡醣。CMP-N-乙醯基神經胺酸和GlcNAc的產生需要彼此仔細優化,以確保CMP-N-乙醯基神經胺酸和GlcNAc兩者的高水平。優化可能包括有效平衡和微調參與CMP-N-乙醯基神經胺酸和GlcNAc兩者合成的多肽的表現水平。The synthesis of CMP-N-acetylneuraminic acid uses GlcNAc, but GlcNAc in cells as described herein is used for the synthesis of disaccharides or oligosaccharides with a GlcNAc unit at the reducing end. Thus, the production of CMP-N-acetylneuraminic acid in cells may reduce the GlcNAc available for the production of bioproducts of interest, ie, disaccharides or oligosaccharides with GlcNAc units at the reducing end. The production of CMP-N-acetylneuraminic acid and GlcNAc needs to be carefully optimized with each other to ensure high levels of both CMP-N-acetylneuraminic acid and GlcNAc. Optimization may include effectively balancing and fine-tuning the performance levels of polypeptides involved in the synthesis of both CMP-N-acetylneuraminic acid and GlcNAc.
在另一較佳實施例中,細胞表現至少一種其他醣基轉移酶,以將合成的N-乙醯葡萄糖胺單醣醣化而形成如本文所述的在還原端具有GlcNAc的寡醣。較佳地,表現至少一種醣基轉移酶,以將該GlcNAc單醣醣化而形成雙醣或寡醣。更佳地,該細胞表現至少二種、又更佳至少三種、又更佳至少四種醣基轉移酶,最佳為表現至少五種醣基轉移酶,以將該GlcNAc單醣醣化而形成根據本發明之雙醣或寡醣。該醣基轉移酶可選自包括但不限於以下之列舉:α-1,2-岩藻糖基轉移酶、α-1,3/1,4-岩藻糖基轉移酶、α-1,6-岩藻糖基轉移酶、α-2,3-唾液酸轉移酶、α-2,6-唾液酸轉移酶、α-2,8-唾液酸轉移酶、β-1,3-半乳糖基轉移酶、β-1,4-半乳糖基轉移酶、α-1,3-半乳糖基轉移酶、α-1,4-半乳糖基轉移酶、N-乙醯基葡糖胺轉移酶、N-乙醯基半乳糖胺轉移酶、葡萄糖基轉移酶、甘露醣基轉移酶、N-乙醯基甘露糖胺轉移酶、木醣基轉移酶、葡萄糖醛酸苷轉移酶、半乳醣醛酸轉移酶、葡萄糖胺轉移酶、N-乙醇醯神經胺轉移酶。在較佳實施例中,該醣基轉移酶為具有經修飾的表現或活性的細胞內源性蛋白質,較佳地,該內源性醣基轉移酶是過度表現;或者該醣基轉移酶是異源性蛋白質,其異源地引入至該細胞並在該細胞中表現,較佳為過度表現。該內源性醣基轉移酶可在細胞中具有經修飾的表現,其亦表現異源性醣基轉移酶。如此合成的寡醣可為線性類型或分支類型並且可包含多個單醣建構區塊(monosaccharide building blocks),如本文所述的定義中所解釋。In another preferred embodiment, the cells express at least one other glycosyltransferase to saccharify synthetic N-acetylglucosamine monosaccharides to form oligosaccharides with GlcNAc at the reducing end as described herein. Preferably, at least one glycosyltransferase is expressed to saccharify the GlcNAc monosaccharide to form a disaccharide or oligosaccharide. More preferably, the cell expresses at least two, more preferably at least three, and more preferably at least four glycosyltransferases, and most preferably at least five glycosyltransferases, to saccharify the GlcNAc monosaccharide to form a base. The disaccharide or oligosaccharide of the present invention. The glycosyltransferase may be selected from the list including but not limited to the following: α-1,2-fucosyltransferase, α-1,3/1,4-fucosyltransferase, α-1,2-fucosyltransferase 6-fucosyltransferase, α-2,3-sialyltransferase, α-2,6-sialyltransferase, α-2,8-sialyltransferase, β-1,3-galactose Syltransferase, β-1,4-galactosyltransferase, α-1,3-galactosyltransferase, α-1,4-galactosyltransferase, N-acetylglucosaminyltransferase , N-acetylgalactosamine transferase, glucosyl transferase, mannosyl transferase, N-acetyl mannosyl transferase, xylosyl transferase, glucuronyl transferase, galactose Aldolase, glucosamine transferase, N-glycolyl neuraminidase. In preferred embodiments, the glycosyltransferase is a cellular endogenous protein with a modified expression or activity, preferably the endogenous glycosyltransferase is overexpressed; or the glycosyltransferase is A heterologous protein, which is introduced into and expressed in the cell heterologously, is preferably overexpressed. The endogenous glycosyltransferase can have a modified expression in the cell that also expresses the heterologous glycosyltransferase. The oligosaccharides so synthesized may be of the linear or branched type and may comprise a plurality of monosaccharide building blocks, as explained in the definitions described herein.
藉由在如本文所述的相同細胞中組合不同的活性醣基轉移酶,產生GlcNAc和包含UDP-半乳糖 (UDP-Gal)的核苷酸-活性糖,其包括UDP-半乳糖(UDP-Gal)、UDP-N-乙醯葡萄糖胺(UDP-GlcNAc)、UDP-N-乙醯半乳糖胺(UDP-GalNAc)、UDP-N-乙醯甘露糖胺(UDP-ManNAc)、GDP-岩藻糖(GDP-Fuc)、GDP-甘露糖(GDP-Man)、UDP-葡萄糖(UDP-Glc)、UDP-2-乙醯胺基-2,6-雙去氧--L阿拉伯-4-己酮醣、UDP-2-乙醯胺基-2,6-雙去氧--L-來蘇-4-己酮醣、UDP-N-乙醯基-L-鼠李糖胺(UDP-L-RhaNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-甘露糖)、dTDP-N-乙醯岩藻糖胺、UDP-N-乙醯岩藻糖胺(UDP-L-FucNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-半乳糖)、UDP-N-乙醯基-L-肺炎糖胺(UDP-L-PneNAC或UDP-2-乙醯胺基-2,6-雙去氧-L-塔羅糖)、UDP-N-乙醯胞壁酸、UDP-N-乙醯基-L-奎諾糖胺(UDP-L-QuiNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-葡萄糖)、GDP-L-異鼠李糖、CMP-N-乙醯基神經胺酸(CMP-Neu5Ac)、CMP-N-乙醇醯神經胺酸(CMP-Neu5Gc)、CMP-Neu4Ac、CMP-Neu5Ac9N 3、CMP-Neu4,5Ac 2、CMP-Neu5,7Ac 2、CMP-Neu5,9Ac 2、CMP-Neu5,7(8,9)Ac 2、UDP-葡萄糖醛酸鹽、 UDP-半乳糖醛酸鹽、GDP-鼠李糖或UDP-木糖,該細胞能夠產生根據通式1的還原端具有GlcNAc單元的雙醣或寡醣: 如本文所述的寡醣可以線性或分支結構形成,其包含α-和β-醣苷鍵兩者或可僅包含β-醣苷鍵,其中B為N-乙醯葡萄糖胺,且其中A、V、W、X、Y及/或Z不存在,或為半乳糖、葡萄糖、岩藻糖、甘露糖、木糖、葡萄糖醛酸、半乳糖醛酸、艾杜糖醛酸、N-乙醯基神經胺酸、N-乙醇醯神經胺酸、葡萄糖胺、N-乙醯半乳糖胺、N-乙醯甘露糖胺、N-乙醯葡萄糖胺及/或由通式2定義的寡醣結構: 其中B為N-乙醯葡萄糖胺,其中A、V、W、X、Y及/或Z不存在,或為半乳糖、葡萄糖、岩藻糖、甘露糖、木糖、葡萄糖醛酸、半乳糖醛酸、艾杜糖醛酸、N-乙醯基神經胺酸、N-乙醇醯神經胺酸、葡萄糖胺、N-乙醯半乳糖胺、N-乙醯甘露糖胺或N-乙醯葡萄糖胺,且在通式1及通式2中,m是3且可選地v是4,或者m是4且可選地v是3,並且其中p是3及/或4,且其中w是6,並且其中如果n>1且p是3,x是3且X不是單醣,並且其中如果n>1且p為4,y是4且Y不是單醣,並且其中z是6,且其中n從1至10。 By combining different active glycosyltransferases in the same cells as described herein, GlcNAc and nucleotide-active sugars comprising UDP-galactose (UDP-Gal), including UDP-galactose (UDP-Gal), are produced. Gal), UDP-N-acetylglucosamine (UDP-GlcNAc), UDP-N-acetylgalactosamine (UDP-GalNAc), UDP-N-acetylmannosamine (UDP-ManNAc), GDP-Rock Fucose (GDP-Fuc), GDP-mannose (GDP-Man), UDP-glucose (UDP-Glc), UDP-2-acetamido-2,6-dideoxy--L-arabino-4- Hexose, UDP-2-acetamido-2,6-dideoxy--L-lytho-4-hexulose, UDP-N-acetamido-L-rhamnosamine (UDP- L-RhaNAc or UDP-2-acetylamino-2,6-dideoxy-L-mannose), dTDP-N-acetylfucosamine, UDP-N-acetylfucosamine (UDP -L-FucNAc or UDP-2-acetamido-2,6-dideoxy-L-galactose), UDP-N-acetamido-L-pneumolysamine (UDP-L-PneNAC or UDP- 2-Acetylamino-2,6-dideoxy-L-talose), UDP-N-Acetylmuramic acid, UDP-N-Acetyl-L-Quinosamine (UDP-L -QuiNAc or UDP-2-acetylamino-2,6-dideoxy-L-glucose), GDP-L-isorhamnose, CMP-N-acetylneuraminic acid (CMP-Neu5Ac), CMP-N-glycolic neuraminic acid (CMP-Neu5Gc), CMP-Neu4Ac, CMP-Neu5Ac9N 3 , CMP-Neu4,5Ac 2 , CMP-Neu5,7Ac 2 , CMP-Neu5,9Ac 2 , CMP-Neu5,7 (8,9)Ac 2 , UDP-glucuronate, UDP-galacturonate, GDP-rhamnose or UDP-xylose, the cells are capable of producing bismuths having GlcNAc units at the reducing end according to formula 1 Sugar or Oligosaccharide: Oligosaccharides as described herein can be formed in linear or branched structures that contain both alpha- and beta-glycosidic linkages or can contain only beta-glycosidic linkages, wherein B is N-acetylglucosamine, and wherein A, V, W, X, Y and/or Z are absent, or galactose, glucose, fucose, mannose, xylose, glucuronic acid, galacturonic acid, iduronic acid, N-acetylneuron Amino acid, N-glycolylneuraminic acid, glucosamine, N-acetylgalactosamine, N-acetylmannosamine, N-acetylglucosamine and/or oligosaccharide structure as defined by general formula 2: wherein B is N-acetylglucosamine, wherein A, V, W, X, Y and/or Z are absent, or galactose, glucose, fucose, mannose, xylose, glucuronic acid, galactose uronic acid, iduronic acid, N-acetylneuraminic acid, N-glycolylneuraminic acid, glucosamine, N-acetylgalactosamine, N-acetylmannosamine, or N-acetylglucosamine amines, and in formula 1 and formula 2, m is 3 and optionally v is 4, or m is 4 and optionally v is 3, and wherein p is 3 and/or 4, and wherein w is 6, and where if n > 1 and p is 3, x is 3 and X is not a monosaccharide, and where if n > 1 and p is 4, y is 4 and Y is not a monosaccharide, and where z is 6, and where n is from 1 to 10.
在較佳實施例中,如本文所述的細胞在該其他糖基轉移酶的表現或活性方面被修飾。In preferred embodiments, the cells as described herein are modified in the expression or activity of the other glycosyltransferases.
在另一較佳實施例中,如本文所述之方法及由本文所述之細胞所產生的還原端具有GlcNAc單元之寡醣選擇自包括以下之列舉:2-岩藻糖基乳-N-雙糖、4-岩藻糖基乳-N-雙糖、2-4-二岩藻糖基乳-N-雙糖、3’-唾液酸乳-N-雙糖、6’-唾液酸乳-N-雙糖、3’,6’-二唾液酸乳-N-雙糖、6,6’-二唾液酸乳-N-雙糖、2’-岩藻糖基-3’-唾液酸乳-N-雙糖、2’-岩藻糖基-6’-唾液酸乳-N-雙糖、4-岩藻糖基-3'-唾液酸乳-N-雙糖、4-岩藻糖基-6’-唾液酸乳-N-雙糖、2-岩藻糖基N-乙醯乳糖胺、3’-岩藻糖基N-乙醯乳糖胺、2,3’-二岩藻糖基N-乙醯乳糖胺、3’-唾液酸N-乙醯乳糖胺、6’-唾液酸N-乙醯乳糖胺、3’,6’-二唾液酸N-乙醯乳糖胺、6,6’-二唾液酸N-乙醯乳糖胺、2’-岩藻糖基-3’-唾液酸N-乙醯乳糖胺、2’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、3-岩藻糖基-3'-唾液酸N-乙醯乳糖胺、3’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、P1三醣(P1 trisaccharide)(Gal-a1,4-Gal-b1,4-GlcNAc)、異源移植抗原決定位(xenotransplantation epitope)(Gal-a1,3-Gal-b1,4-GlcNAc)、Gal-b14-(Galb13)-GlcNAc、聚-N-乙醯乳糖胺、GalNAc-b1,3-Gal-b1,4-GlcNAc。In another preferred embodiment, the oligosaccharides having GlcNAc units at the reducing end as produced by the methods and cells described herein are selected from the list comprising: 2-fucosylacto-N- Disaccharide, 4-fucosyllacto-N-disaccharide, 2-4-difucosyllacto-N-disaccharide, 3'-sialylacto-N-disaccharide, 6'-sialyolide -N-disaccharide, 3',6'-disialo-N-disaccharide, 6,6'-disialo-N-disaccharide, 2'-fucosyl-3'-sialic acid Lacto-N-disaccharide, 2'-fucosyl-6'-sialo-N-disaccharide, 4-fucosyl-3'-sialo-N-disaccharide, 4-fucosyl Glycosyl-6'-Sialylol-N-Disaccharide, 2-Fucosyl-N-Acetyllactosamine, 3'-Fucosyl-N-Acetyllactosamine, 2,3'-Difucosamine Glycosyl N-acetyllactosamine, 3'-sialo-N-acetyllactosamine, 6'-sialo-N-acetyllactosamine, 3',6'-disialo-N-acetyllactosamine, 6 ,6'-Disialo-N-acetyllactosamine, 2'-fucosyl-3'-sialo-N-acetyllactosamine, 2'-fucosyl-6'-sialic acid N-ethyl Glucosamine, 3-fucosyl-3'-sialic acid N-acetyl lactosamine, 3'-fucosyl-6'-sialic acid N-acetyl lactosamine, P1 trisaccharide (P1 trisaccharide) (Gal-a1,4-Gal-b1,4-GlcNAc), xenotransplantation epitope (Gal-a1,3-Gal-b1,4-GlcNAc), Gal-b14-(Galb13)- GlcNAc, poly-N-acetyllactosamine, GalNAc-b1,3-Gal-b1,4-GlcNAc.
在根據本發明的方法及/或細胞的較佳實施例中,細胞表現膜轉運蛋白或具有轉運活性的多肽,以轉運化合物穿過細胞壁的外膜。在本發明的方法及/或細胞的更佳實施例中,細胞在該膜轉運蛋白或具有轉運活性的多肽的表現或活性方面被修飾。該膜轉運蛋白或具有轉運活性的多肽為具有經修飾的表現或活性的細胞內源性蛋白質,較佳為該內源性膜轉運蛋白或具有轉運活性的多肽為過度表現;或者,該膜轉運蛋白或具有轉運活性的多肽為異源性蛋白質,其異源地引入該細胞並在該細胞中表現,較佳為過度表現。該內源性膜轉運蛋白或具有轉運活性的多肽可在細胞中具有修飾的表現,該細胞亦表現異源性膜轉運蛋白或具有轉運活性的多肽。In a preferred embodiment of the method and/or cell according to the present invention, the cell expresses a membrane transporter protein or a polypeptide having transport activity to transport compounds across the outer membrane of the cell wall. In a more preferred embodiment of the method and/or cell of the present invention, the cell is modified in the expression or activity of the membrane transporter or polypeptide having transport activity. The membrane transporter or polypeptide with transport activity is a cellular endogenous protein with modified expression or activity, preferably the endogenous membrane transporter or polypeptide with transport activity is overexpressed; or, the membrane transporter A protein or polypeptide having transport activity is a heterologous protein that is introduced into the cell heterologously and is expressed, preferably overexpressed, in the cell. The endogenous membrane transporter or polypeptide with transport activity can have a modified expression in a cell that also expresses the heterologous membrane transporter or polypeptide with transport activity.
在本發明的方法及/或細胞的更佳實施例中,膜轉運蛋白或具有轉運活性的多肽選自包括以下的列舉:運輸蛋白、P-P-鍵-水解-驅動的轉運體、β-桶狀孔蛋白、輔助轉運蛋白、推定轉運蛋白及磷酸轉移-驅動組轉位蛋白。在本發明的方法及/或細胞的又更佳實施例中,運輸蛋白包括MFS轉運體、糖排出轉運體及螯鐵蛋白輸出體。在本發明的方法及/或細胞的另一更佳實施例中,P-P-鍵-水解-驅動的轉運體包括ABC轉運體及螯鐵蛋白輸出體。In a more preferred embodiment of the method and/or cell of the present invention, the membrane transporter or polypeptide having transport activity is selected from the list including: transporter, P-P-bond-hydrolysis-driven transporter, β-barrel Porins, cotransporters, putative transporters, and phosphotransfer-driver group translocators. In yet more preferred embodiments of the methods and/or cells of the present invention, the transporter proteins include MFS transporters, sugar efflux transporters and chelatin exporters. In another more preferred embodiment of the methods and/or cells of the present invention, the P-P-bond-hydrolysis-driven transporters include ABC transporters and chelatin exporters.
在本發明之方法及/或細胞的另一較佳實施例中,膜轉運蛋白或具有轉運活性的多肽控制該還原端具有GlcNAc單元的雙醣或寡醣在細胞壁外膜上的流動。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽控制該還原端具有GlcNAc單元的雙醣及寡醣在細胞壁外膜上的流動。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽控制該一或多種基於乳糖的MMO在細胞壁外膜上的流動。In another preferred embodiment of the method and/or cell of the present invention, a membrane transporter or a polypeptide having transport activity controls the flow of the disaccharide or oligosaccharide having a GlcNAc unit at the reducing end on the outer membrane of the cell wall. In an alternative and/or additional preferred embodiment of the method and/or cell of the present invention, a membrane transporter or a polypeptide having transport activity controls the flow of the disaccharide and oligosaccharide having a GlcNAc unit at the reducing end on the outer membrane of the cell wall . In alternative and/or additional preferred embodiments of the methods and/or cells of the invention, membrane transporters or polypeptides having transport activity control the flow of the one or more lactose-based MMOs on the outer membrane of the cell wall.
在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽控制一或多種前驅物在細胞壁外膜上的流動,該前驅物用於產生該還原端具有GlcNAc單元的雙醣或寡醣。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽控制一或多種前驅物在細胞壁外膜上的流動,該前驅物用於產生該還原端具有GlcNAc單元的雙醣及寡醣。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽控制一或多種前驅物在細胞壁外膜上的流動,該前驅物用於產生一或多種基於乳糖的MMO。In alternative and/or additional preferred embodiments of the methods and/or cells of the present invention, membrane transporters or polypeptides having transport activity control the flow of one or more precursors on the outer membrane of the cell wall for the production of The reducing end has a disaccharide or oligosaccharide of a GlcNAc unit. In alternative and/or additional preferred embodiments of the methods and/or cells of the present invention, membrane transporters or polypeptides having transport activity control the flow of one or more precursors on the outer membrane of the cell wall for the production of The reducing end has disaccharides and oligosaccharides of GlcNAc units. In alternative and/or additional preferred embodiments of the methods and/or cells of the present invention, membrane transporters or polypeptides having transport activity control the flow of one or more precursors on the outer membrane of the cell wall for the production of One or more lactose-based MMOs.
在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽控制一或多種接受者在細胞壁外膜上的流動,該接受者用於產生該還原端具有GlcNAc單元的雙醣或寡醣。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽控制一或多種接受者在細胞壁外膜上的流動,該接受者用於產生該還原端具有GlcNAc單元的雙醣及寡醣。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽控制一或多種接受者在細胞壁外膜上的流動,該接受者用於產生該一或多種基於乳糖的MMO。In alternative and/or additional preferred embodiments of the methods and/or cells of the invention, membrane transporters or polypeptides having transport activity control the flow of one or more recipients on the outer membrane of the cell wall for generating The reducing end has a disaccharide or oligosaccharide of a GlcNAc unit. In alternative and/or additional preferred embodiments of the methods and/or cells of the invention, membrane transporters or polypeptides having transport activity control the flow of one or more recipients on the outer membrane of the cell wall for generating The reducing end has disaccharides and oligosaccharides of GlcNAc units. In alternative and/or additional preferred embodiments of the methods and/or cells of the invention, membrane transporters or polypeptides having transport activity control the flow of one or more recipients on the outer membrane of the cell wall for generating the one or more lactose-based MMOs.
在本發明之方法及/或細胞的另一較佳實施例中,膜轉運蛋白或具有轉運活性的多肽提供該還原端具有GlcNAc單元的雙醣或寡醣的改善產生。在本發明之方法及/或細胞的另一較佳實施例中,膜轉運蛋白或具有轉運活性的多肽提供該還原端具有GlcNAc單元的雙醣及寡醣的改善產生。在本發明之方法及/或細胞的另一較佳實施例中,膜轉運蛋白或具有轉運活性的多肽提供該一或多種基於乳糖的MMO的改善產生。In another preferred embodiment of the method and/or cell of the present invention, the membrane transporter or polypeptide having transport activity provides improved production of the disaccharide or oligosaccharide having a GlcNAc unit at the reducing end. In another preferred embodiment of the method and/or cell of the present invention, the membrane transporter or polypeptide having transport activity provides improved production of disaccharides and oligosaccharides having a GlcNAc unit at the reducing end. In another preferred embodiment of the methods and/or cells of the invention, a membrane transporter or polypeptide having transport activity provides improved production of the one or more lactose-based MMOs.
在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽提供允許該還原端具有GlcNAc殘基的雙醣或寡醣的流出。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽提供允許該還原端具有GlcNAc殘基的雙醣及寡醣的流出。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽提供允許該一或多種基於乳糖的MMO的流出。In alternative and/or additional preferred embodiments of the methods and/or cells of the invention, the membrane transporter or polypeptide having transport activity provides for the efflux of disaccharides or oligosaccharides having a GlcNAc residue at the reducing end. In alternative and/or additional preferred embodiments of the methods and/or cells of the invention, membrane transporters or polypeptides having transport activity provide for efflux of disaccharides and oligosaccharides having GlcNAc residues at the reducing end. In alternative and/or additional preferred embodiments of the methods and/or cells of the invention, a membrane transporter or polypeptide having transport activity provides for efflux of the one or more lactose-based MMOs.
在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽提供促進該還原端具有GlcNAc殘基的雙醣或寡醣的流出。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽提供促進該還原端具有GlcNAc殘基的雙醣及寡醣的流出。在本發明之方法及/或細胞的替代及/或另外較佳實施例中,膜轉運蛋白或具有轉運活性的多肽提供促進該一或多種基於乳糖的MMO的流出。In alternative and/or additional preferred embodiments of the methods and/or cells of the invention, the membrane transporter or polypeptide having transport activity provides for facilitating the efflux of the disaccharide or oligosaccharide having a GlcNAc residue at the reducing end. In alternative and/or additional preferred embodiments of the methods and/or cells of the present invention, membrane transporters or polypeptides with transport activity are provided to facilitate the efflux of disaccharides and oligosaccharides having GlcNAc residues at the reducing end. In alternative and/or additional preferred embodiments of the methods and/or cells of the present invention, a membrane transporter or polypeptide having transport activity is provided to facilitate efflux of the one or more lactose-based MMOs.
在本發明之方法及/或細胞的另一較佳實施例中,細胞表現選自包括乳糖轉運體的群組的多肽,例如LacY或lac12通透酶、葡萄糖轉運體、半乳糖轉運體、岩藻糖轉運體、核苷酸活性糖的轉運體,例如UDP-Gal、UDP-GlcNAc、GDP-Fuc或CMP-唾液酸的轉運體。如此,該轉運體將內化經添加前驅物及/或接受者的培養基,以用於合成在還原端具有GlcNAc單元的雙醣或寡醣及/或基於乳糖的MMO。In another preferred embodiment of the method and/or cell of the present invention, the cell expresses a polypeptide selected from the group comprising lactose transporters, such as LacY or lac12 permease, glucose transporter, galactose transporter, rock Fucose transporter, transporter of nucleotide-active sugars, eg, transporter of UDP-Gal, UDP-GlcNAc, GDP-Fuc or CMP-sialic acid. As such, the transporter will internalize the precursor and/or acceptor added medium for the synthesis of disaccharides or oligosaccharides and/or lactose-based MMOs with GlcNAc units at the reducing end.
在本發明之方法及/或細胞的更佳實施例中,細胞表現屬於MFS轉運體家族的膜轉運蛋白,例如來自包括大腸桿菌(UniProt ID P0AEY8)、阪崎腸桿菌( Cronobacter muytjensii)(UniProt ID A0A2T7ANQ9)、楊氏檸檬酸桿菌( Citrobacter youngae)(UniProt ID D4BC23)和肺炎克雷伯氏菌( Yokenella regensburgei)(UniProt ID G9Z5F4)物種的多藥轉運體MdfA家族的MdfA多肽。在本發明之方法及/或細胞的另一更佳實施例中,細胞表現屬於糖排出轉運體家族的膜轉運蛋白,例如來自包含大腸桿菌(UniProt ID P31675)、科氏檸檬酸桿菌( Citrobacter koseri)(UniProt ID A0A078LM16)和克雷伯氏菌肺炎菌( Klebsiella pneumoniae )(UniProt ID A0A0C4MGS7)的物種的SetA家族的SetA多肽。在本發明之方法及/或細胞的另一更佳實施例中,細胞表現屬於螯鐵蛋白輸出體家族的膜轉運蛋白,例如大腸桿菌entS(UniProt ID P24077)和大腸桿菌iceT(UniProt ID A0A024L207)。在本發明之方法及/或細胞的另一更佳實施例中,細胞表現屬於ABC轉運體家族的膜轉運蛋白,例如來自大腸桿菌的oppF(UniProt ID P77737)、來自乳酸乳球菌乳酸亞種雙乙醯生物突變株( Lactococcus lactis subsp. lactis bv. Diacetylactis)(UniProt ID A0A1V0NEL4)的lmrA以及來自雙叉乳桿菌嬰兒亞種 ( Bifidobacterium longum subsp. Infantis )(UniProt ID B7GPD4)的Blon_2475。 In a more preferred embodiment of the method and/or cell of the present invention, the cell expresses a membrane transporter belonging to the MFS transporter family, for example from Escherichia coli (UniProt ID P0AEY8), Cronobacter muytjensii (UniProt ID) MdfA polypeptides of the MdfA family of multidrug transporters of A0A2T7ANQ9), Citrobacter youngae (UniProt ID D4BC23), and Yokenella regensburgei (UniProt ID G9Z5F4) species. In another more preferred embodiment of the method and/or cell of the present invention, the cell expresses a membrane transporter belonging to the family of sugar excretion transporters, such as those derived from Escherichia coli (UniProt ID P31675), Citrobacter koseri ) (UniProt ID A0A078LM16) and SetA polypeptides of the SetA family of species of Klebsiella pneumoniae (UniProt ID A0A0C4MGS7). In another preferred embodiment of the method and/or cell of the present invention, the cell expresses a membrane transporter belonging to the chelatin exporter family, such as E. coli entS (UniProt ID P24077) and E. coli iceT (UniProt ID A0A024L207) . In another preferred embodiment of the method and/or cell of the present invention, the cell expresses a membrane transporter belonging to the ABC transporter family, such as oppF from Escherichia coli (UniProt ID P77737), from Lactococcus lactis subsp. lmrA from Lactococcus lactis subsp. lactis bv. Diacetylactis (UniProt ID A0A1V0NEL4) and Blon_2475 from Bifidobacterium longum subsp. Infantis ( UniProt ID B7GPD4 ) .
根據本發明的方法及/或細胞的另一實施例,細胞能夠產生磷酸烯醇丙酮酸(PEP)。根據本發明的方法及/或細胞的另一實施例,細胞包含還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的產生途徑,其包括PEP的產生途徑。在本發明的方法及/或細胞的較佳實施例中,與未修飾的先驅細胞(progenitor)相比,該細胞被修飾以促進PEP的產生及/或供應。According to another embodiment of the method and/or cell of the present invention, the cell is capable of producing phosphoenolpyruvate (PEP). According to another embodiment of the method and/or cell of the present invention, the cell comprises a disaccharide or oligosaccharide production pathway having an N-acetylglucosamine unit at the reducing end, which includes a PEP production pathway. In preferred embodiments of the methods and/or cells of the invention, the cells are modified to facilitate the production and/or supply of PEP compared to unmodified progenitor cells.
在另一較佳實施例中,細胞包含還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的產生途徑,其包括與未修飾的先驅細胞相比,用於促進PEP的產生及/或供應的任一或多個修飾。In another preferred embodiment, the cell comprises a disaccharide or oligosaccharide production pathway with an N-acetylglucosamine unit at the reducing end, which includes promoting the production of PEP compared to unmodified precursor cells and/or or any one or more modifications of the supply.
在較佳實施例中且作為促進PEP產生及/或供應的手段,一或多個PEP依賴性的糖轉運磷酸轉移酶系統被破壞,例如但不限於:1)N-乙醯基-D-葡糖胺 Npi-磷酸轉移酶(EC 2.7.1.193),例如由大腸桿菌或芽孢桿菌中的nagE基因(或簇nagABCD)編碼、2)編碼酶ll Man複合物(甘露糖PTS通透酶、蛋白質-Npi-磷酸組胺酸-D-甘露糖磷酸轉移酶)的ManXYZ導入外源己糖(甘露糖、葡萄糖、葡萄糖胺、果糖、2-脫氧葡萄糖、甘露糖胺、N-乙醯葡萄糖胺等)並將磷酸酯釋放到細胞質中、3)葡萄糖特異性PTS轉運體(例如由PtsG/Crr編碼),其吸收葡萄糖並在細胞質中形成葡萄糖-6-磷酸鹽、4)蔗糖特異性PTS轉運體,其吸收蔗糖並在細胞質中形成蔗糖-6-磷酸鹽、5)果糖特異性PTS轉運體(例如由基因fruA和fruB和激酶fruK編碼,其吸收果糖並在第一步中形成果糖-1-磷酸鹽且在第二步中形成果糖1,6-二磷酸鹽、6)乳糖PTS轉運體(例如,由乾酪乳桿菌( Lactococcus casei)中的lacE 編碼),其吸收乳糖並形成乳糖-6-磷酸鹽、7)半乳糖醇特異性PTS酶,其吸收半乳糖醇及/或山梨醇並分別形成半乳糖醇-1-磷酸鹽或山梨醇-6-磷酸鹽、8)甘露醇特異性PTS酶,其吸收甘露醇及/或山梨醇並分別形成甘露醇-1-磷酸鹽或山梨醇-6-磷酸鹽、以及9)海藻糖特異性PTS酶,其吸收海藻糖並形成海藻糖-6-磷酸鹽。 In preferred embodiments and as a means of promoting PEP production and/or supply, one or more PEP-dependent sugar transport phosphotransferase systems are disrupted, such as, but not limited to: 1) N-Acetyl-D- Glucosamine Npi-phosphotransferase (EC 2.7.1.193), e.g. encoded by the nagE gene (or cluster nagABCD) in E. coli or Bacillus, 2) encoding the enzyme llMan complex (mannose PTS permease, protein - ManXYZ of Npi-phosphohistidine-D-mannose phosphotransferase) introduces exogenous hexoses (mannose, glucose, glucosamine, fructose, 2-deoxyglucose, mannosamine, N-acetylglucosamine, etc. ) and release phosphate into the cytoplasm, 3) a glucose-specific PTS transporter (e.g. encoded by PtsG/Crr), which takes up glucose and forms glucose-6-phosphate in the cytoplasm, 4) a sucrose-specific PTS transporter , which takes up sucrose and forms sucrose-6-phosphate in the cytoplasm, 5) a fructose-specific PTS transporter (e.g., encoded by the genes fruA and fruB and the kinase fruK, which takes up fructose and forms fructose-1- phosphate and in a second step fructose 1,6-bisphosphate, 6) Lactose PTS transporter (eg, encoded by lacE in Lactococcus casei ), which takes up lactose and forms lactose-6- Phosphate, 7) Galactitol-specific PTS enzymes that absorb galactitol and/or sorbitol and form galactitol-1-phosphate or sorbitol-6-phosphate, respectively, 8) Mannitol-specific PTS Enzymes that take up mannitol and/or sorbitol and form mannitol-1-phosphate or sorbitol-6-phosphate, respectively, and 9) Trehalose-specific PTS enzymes that take up trehalose and form trehalose-6 - Phosphate.
在另一及/或另外較佳實施例且作為促進PEP產生及/或供應的手段,藉由破壞PtsIH/Crr基因簇而破壞PTS系統整體。PtsI(酶 I)是細胞質蛋白,其可作為大腸桿菌K-12的磷酸烯醇丙酮酸:糖磷酸轉移酶系統(PTSsugar)的門戶。PtsI是PTSsugar的兩種(PtsI和PtsH)糖非特異性蛋白質建構之一,其與糖特異性內膜通透酶一起影響磷酸轉移級聯(phosphotransfer cascade),導致多種碳水化合物基質的耦合磷酸化及轉運。HPr(含組胺酸蛋白質)是PTSsugar的兩種糖非特異性蛋白質建構之一。其接受來自磷酸化酶I(PtsI-P)的磷醯基,接著將其轉移到PTSsugar的許多糖特異性酶(統稱為酶II)中的任一種的EIIA域。Crr或EIIAGlc在需要PtsH和PtsI的反應中藉由PEP磷酸化。In another and/or further preferred embodiment and as a means of promoting PEP production and/or supply, the PTS system as a whole is disrupted by disrupting the PtsIH/Crr gene cluster. PtsI (enzyme I) is a cytoplasmic protein that acts as a gateway to the phosphoenolpyruvate:sugar phosphotransferase system (PTSsugar) of Escherichia coli K-12. PtsI, one of two (PtsI and PtsH) sugar-nonspecific protein constructs of PTSsugar, works with sugar-specific inner membrane permeases to affect the phosphotransfer cascade leading to coupled phosphorylation of multiple carbohydrate substrates and transfer. HPr (histidine-containing protein) is one of two sugar-nonspecific protein constructs of PTSsugar. It accepts a phosphonium group from phosphorylase I (PtsI-P), which is then transferred to the EIIA domain of any of PTSsugar's many carbohydrate-specific enzymes (collectively referred to as Enzyme II). Crr or EIIAGlc are phosphorylated by PEP in reactions requiring PtsH and PtsI.
在另一及/或另外較佳實施例,藉由引入及/或過度表現對應的通透酶,進一步修飾細胞以補償碳源的PTS系統缺失。這些是例如通透酶或ABC轉運體,其包括但不限於特異性輸入乳糖(例如由大腸桿菌的LacY基因編碼的轉運體等)、蔗糖(例如由來自大腸桿菌的cscB基因編碼的轉運體等)、葡萄糖(例如由來自大腸桿菌的galP基因編碼的轉運體等)、果糖(例如由變異鏈球菌(Streptococcus mutans)的fruI基因編碼的轉運體等)、或山梨醇/甘露醇ABC轉運蛋白(例如由類紅球桿菌( Rhodobacter sphaeroides )的SmoEFGK簇編碼的轉運體等)、海藻糖/蔗糖/麥芽糖轉運體(例如由苜蓿中華根瘤菌( Sinorhizobium meliloti)的基因簇ThuEFGK編碼的轉運轉運體等)、和N-乙醯葡萄糖胺/半乳糖/葡萄糖轉運體(例如由奧奈達希瓦氏菌( Shewanella oneidensis )的NagP編碼的轉運體)之轉運體。PTS缺失與替代轉運體過度表現的組合的例子是:1)葡萄糖PTS系統(例如,ptsG基因)的缺失結合葡萄糖通透酶(例如,glcP的galP)的引入及/或過度表現、2)果糖PTS系統(例如,一或多個fruB、fruA、fruK基因)的缺失結合果糖通透酶(例如,fruI)的引入及/或過度表現、3)乳糖PTS系統的缺失結合乳糖通透酶(例如,LacY)的引入及/或過度表現、及/或4)蔗糖PTS系統的缺失結合蔗糖通透酶(例如,cscB)的引入及/或過度表現。 In another and/or further preferred embodiment, the cells are further modified to compensate for the absence of the PTS system of the carbon source by introducing and/or overexpressing the corresponding permease. These are, for example, permease or ABC transporters, which include, but are not limited to, specific import of lactose (eg, the transporter encoded by the LacY gene from E. coli, etc.), sucrose (eg, the transporter encoded by the cscB gene from E. coli, etc.) ), glucose (such as the transporter encoded by the galP gene from E. coli, etc.), fructose (such as the transporter encoded by the fruI gene of Streptococcus mutans, etc.), or the sorbitol/mannitol ABC transporter ( For example, transporters encoded by the SmoEFGK cluster of Rhodobacter sphaeroides , etc. ) , trehalose/sucrose/maltose transporters (eg, transporters encoded by the gene cluster ThuEFGK of Sinorhizobium meliloti , etc.) , and the N-acetylglucosamine/galactose/glucose transporter (eg, the transporter encoded by NagP of Shewanella oneidensis ) . Examples of combinations of PTS deletion and alternative transporter overexpression are: 1) deletion of the glucose PTS system (eg, the ptsG gene) combined with introduction and/or overexpression of a glucose permease (eg, galP of glcP), 2) fructose Deletion of a PTS system (eg, one or more fruB, fruA, fruK genes) in combination with the introduction and/or overexpression of a fructose permease (eg, fruI), 3) deletion of a lactose PTS system in combination with a lactose permease (eg, fruI) , LacY) introduction and/or overexpression, and/or 4) deletion of the sucrose PTS system combined with introduction and/or overexpression of a sucrose permease (eg, cscB).
在進一步較佳實施例中,藉由引入碳水化合物激酶(例如葡萄糖激酶(EC 2.7.1.1、EC 2.7.1.2、EC 2.7.1.63)、半乳糖激酶(EC 2.7.1.6)及/或果糖激酶(EC 2.7.1.3、EC 2.7.1.4))修飾細胞以補償碳源的PTS系統的缺失。PTS缺失與替代轉運體和激酶的過度表現的組合的例子是:1)葡萄糖PTS系統(例如,ptsG基因)的缺失結合葡萄糖通透酶(例如,glcP的galP)的引入及/或過度表現、結合葡萄糖激酶(例如,glk)的引入及/或過度表現、及/或2)果糖PTS系統(例如,一或多個fruB、fruA、fruK基因)的缺失結合結合果糖通透酶(例如,fruI)的引入及/或過度表現、結合果糖激酶(例如,frk或mak)的引入及/或過度表現。In a further preferred embodiment, by introducing carbohydrate kinases such as glucokinase (EC 2.7.1.1, EC 2.7.1.2, EC 2.7.1.63), galactokinase (EC 2.7.1.6) and/or fructokinase ( EC 2.7.1.3, EC 2.7.1.4)) Modification of cells to compensate for the absence of the PTS system of the carbon source. Examples of combinations of PTS deletion with overexpression of alternative transporters and kinases are: 1) deletion of the glucose PTS system (eg, the ptsG gene) combined with introduction and/or overexpression of a glucose permease (eg, galP of glcP), In conjunction with introduction and/or overexpression of glucokinase (eg, glk), and/or 2) deletion of the fructose PTS system (eg, one or more fruB, fruA, fruK genes) in conjunction with a fructose permease (eg, fruI) ), introduction and/or overexpression of a bound fructokinase (eg, frk or mak).
在另一及/或另外較佳實施例並且作為促進PEP產生及/或供應的手段,藉由包含以下列舉中的任一或多種進行引入或修飾:磷酸烯醇丙酮酸合成酶活性(例如在大腸桿菌中由ppsA編碼的EC: 2.7.9.2)、磷酸烯醇丙酮酸羧激酶活性(分別例如在麩胺酸棒狀桿菌( Corynebacterium glutamicum)中由PCK編碼或在大腸桿菌中由pckA編碼的EC 4.1.1.32或EC 4.1.1.49)、磷酸烯醇丙酮酸羧酶活性(例如在大腸桿菌中由ppc編碼的EC 4.1.1.31)、草醯乙酸鹽去羧酶(oxaloacetate decarboxylase)(例如在大腸桿菌中由eda編碼的EC 4.1.1.112)、丙酮酸激酶活性(例如在大腸桿菌中由pykA及pykF編碼的EC 2.7.1.40)、丙酮酸羧酶活性(例如在枯草芽孢桿菌中由pyc編碼的EC 6.4.1.1)和蘋果酸脫氫酶活性(分別例如在大腸桿菌中由maeA或maeB編碼的EC 1.1.1.38或EC 1.1.1.40)。 In another and/or further preferred embodiment and as a means of promoting PEP production and/or supply, the introduction or modification is carried out by including any one or more of the following enumeration: phosphoenolpyruvate synthase activity (e.g. in EC encoded by ppsA in E. coli: 2.7.9.2), phosphoenolpyruvate carboxykinase activity (e.g. EC encoded by PCK in Corynebacterium glutamicum or by pckA in E. coli, respectively) 4.1.1.32 or EC 4.1.1.49), phosphoenolpyruvate carboxylase activity (e.g. in E. coli encoded by ppc EC 4.1.1.31), oxaloacetate decarboxylase (e.g. in E. coli EC 4.1.1.112 encoded by eda in E. coli), pyruvate kinase activity (e.g. EC 2.7.1.40 encoded by pykA and pykF in E. coli), pyruvate carboxylase activity (e.g. EC encoded by pyc in Bacillus subtilis) 6.4.1.1) and malate dehydrogenase activity (eg EC 1.1.1.38 or EC 1.1.1.40 encoded by maeA or maeB in E. coli, respectively).
在更佳實施例中,細胞經修飾以過度表現任一或多種多肽,其包括來自大腸桿菌的ppsA(UniProt ID P23538)、來自麩胺酸棒狀桿菌的PCK(UniProt ID Q6F5A5)、來自大腸桿菌的pcka(UniProt ID P22259)、來自大腸桿菌的eda(UniProt ID P0A955)、來自大腸桿菌的maeA(UniProt ID P26616)和來自大腸桿菌的maeB(UniProt ID P76558)。In a more preferred embodiment, the cells are modified to overexpress any one or more polypeptides including ppsA from E. coli (UniProt ID P23538), PCK from Corynebacterium glutamicum (UniProt ID Q6F5A5), from E. coli pcka from E. coli (UniProt ID P22259), eda from E. coli (UniProt ID P0A955), maeA from E. coli (UniProt ID P26616) and maeB from E. coli (UniProt ID P76558).
在另一及/或另外較佳實施例,細胞經修飾以表現具有磷酸烯醇丙酮酸合成酶活性、磷酸烯醇丙酮酸羧激酶活性、草醯乙酸鹽去羧酶活性或蘋果酸脫氫酶活性的任一或多種多肽。In another and/or further preferred embodiment, the cells are modified to exhibit phosphoenolpyruvate synthase activity, phosphoenolpyruvate carboxykinase activity, oxaloacetate decarboxylase activity or malate dehydrogenase activity Active any one or more polypeptides.
在另一及/或另外較佳實施例並且作為促進PEP產生及/或供應的手段,藉由磷酸烯醇丙酮酸羧酶活性及/或丙酮酸激酶活性的降低活性,較佳為編碼磷酸烯醇丙酮酸羧酶、丙酮酸羧酶活性及/或丙酮酸激酶的基因缺失進行細胞修飾。In another and/or further preferred embodiment and as a means of promoting the production and/or supply of PEP, by reducing activity of phosphoenolpyruvate carboxylase activity and/or pyruvate kinase activity, preferably encoding a phosphoene Cell modification by gene deletion of alcohol pyruvate carboxylase, pyruvate carboxylase activity, and/or pyruvate kinase.
在例示性實施例中,細胞藉由不同的適應進行基因改造,例如磷酸烯醇丙酮酸合成酶的過度表現結合丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合丙酮酸羧酶基因的缺失、草醯乙酸鹽去羧酶的過度表現結合丙酮酸激酶基因的缺失、草醯乙酸鹽去羧酶的過度表現結合磷酸烯醇丙酮酸羧酶基因的缺失、草醯乙酸鹽去羧酶的過度表現結合丙酮酸羧酶基因的缺失、蘋果酸脫氫酶的過度表現結合丙酮酸激酶基因的缺失、蘋果酸脫氫酶的過度表現結合磷酸烯醇丙酮酸羧酶基因的缺失、及/或蘋果酸脫氫酶的過度表現結合丙酮酸羧酶基因的缺失。In exemplary embodiments, cells are genetically engineered with different adaptations, such as overexpression of phosphoenolpyruvate synthase in combination with deletion of the pyruvate kinase gene, overexpression of phosphoenolpyruvate synthase in combination with phosphoenol Deletion of pyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with deletion of pyruvate carboxylase gene, overexpression of phosphoenolpyruvate carboxykinase combined with deletion of pyruvate kinase gene, phosphoenolpyruvate Overexpression of carboxykinase in combination with deletion of phosphoenolpyruvate carboxylase gene, overexpression of phosphoenolpyruvate carboxykinase in combination with deletion of pyruvate carboxylase gene, overexpression of oxaloacetate decarboxylase in combination with pyruvate kinase Gene deletion, overexpression of oxalate decarboxylase combined with deletion of phosphoenolpyruvate carboxylase gene, overexpression of oxalate decarboxylase combined with deletion of pyruvate carboxylase gene, malate dehydrogenase Overexpression of pyruvate kinase gene combined with deletion of pyruvate kinase gene, overexpression of malate dehydrogenase combined with deletion of phosphoenolpyruvate carboxylase gene, and/or overexpression of malate dehydrogenase combined with deletion of pyruvate carboxylase gene .
在另一例示性實施例中,細胞藉由不同的適應進行基因改造,例如磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現、磷酸烯醇丙酮酸合成酶的過度表現結合蘋果酸脫氫酶的過度表現、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現、磷酸烯醇丙酮酸羧激酶的過度表現結合蘋果酸脫氫酶的過度表現、草醯乙酸鹽去羧酶的過度表現結合蘋果酸脫氫酶的過度表現、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及蘋果酸脫氫酶的過度表現、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現、及/或磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現。In another exemplary embodiment, cells are genetically engineered with different adaptations, such as overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase, phosphoenolpyruvate synthase Overexpression combined with overexpression of oxaloacetate decarboxylase, overexpression of phosphoenolpyruvate synthase combined with overexpression of malate dehydrogenase, overexpression of phosphoenolpyruvate carboxykinase combined with oxaloacetate decarboxylase Overexpression of carboxylase, overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of malate dehydrogenase, overexpression of oxalate decarboxylase combined with overexpression of malate dehydrogenase, phosphoenolacetone Overexpression of acid synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of oxaloacetate decarboxylase, overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of malate dehydrogenase, overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase Overexpression, overexpression of phosphoenolpyruvate carboxykinase in combination with overexpression of oxaloacetate decarboxylase and overexpression of malate dehydrogenase, and/or overexpression of phosphoenolpyruvate synthase in combination with oxaloacetate Overexpression of salt decarboxylase and overexpression of malate dehydrogenase.
在另一例示性實施例中,細胞藉由不同的適應進行基因改造,例如磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸激酶基因的缺失、草醯乙酸鹽去羧酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸激酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸激酶基因的缺失。In another exemplary embodiment, cells are genetically modified by different adaptations, such as overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and deletion of the pyruvate kinase gene, phosphoenolpyruvate synthase Overexpression of enolpyruvate synthase combined with overexpression of oxalate decarboxylase and deletion of the pyruvate kinase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of malate dehydrogenase and pyruvate Deletion of the kinase gene, overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of oxalate decarboxylase and deletion of the pyruvate kinase gene, overexpression of phosphoenolpyruvate carboxykinase combined with malate dehydrogenase Overexpression of pyruvate kinase gene and deletion of pyruvate kinase gene, overexpression of oxalate decarboxylase combined with overexpression of malate dehydrogenase and deletion of pyruvate kinase gene, overexpression of phosphoenolpyruvate synthase combined with phosphate Overexpression of enolpyruvate carboxykinase and overexpression of oxaloacetate decarboxylase and deletion of the pyruvate kinase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and Overexpression of malate dehydrogenase and deletion of pyruvate kinase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of oxalate decarboxylase and apple Overexpression of acid dehydrogenase and deletion of pyruvate kinase gene, overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and pyruvate kinase gene Deletion of phosphoenolpyruvate synthase, overexpression of phosphoenolpyruvate synthase combined with overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and deletion of the pyruvate kinase gene.
在另一例示性實施例中,細胞藉由不同的適應進行基因改造,例如磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合蘋果酸脫氫酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合蘋果酸脫氫酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、草醯乙酸鹽去羧酶的過度表現結合蘋果酸脫氫酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及蘋果酸脫氫酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及磷酸烯醇丙酮酸羧酶基因的缺失。In another exemplary embodiment, cells are genetically engineered with different adaptations, such as overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and phosphoenolpyruvate carboxylase genes Deletion of phosphoenolpyruvate synthase combined with overexpression of oxalate decarboxylase and deletion of phosphoenolpyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with malate decarboxylase Overexpression of hydrogenase and deletion of phosphoenolpyruvate carboxylase gene, overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of oxaloacetate decarboxylase and deletion of phosphoenolpyruvate carboxylase gene, Overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of malate dehydrogenase and deletion of the phosphoenolpyruvate carboxylase gene, overexpression of oxalate decarboxylase combined with overexpression of malate dehydrogenase and deletion of phosphoenolpyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of oxaloacetate decarboxylase and phosphoenolpyruvate Deletion of carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of malate dehydrogenase and deletion of phosphoenolpyruvate carboxylase gene, phosphoene Overexpression of alcohol pyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and deletion of the phosphoenolpyruvate carboxylase gene , Overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and deletion of phosphoenolpyruvate carboxylase gene, phosphoenolpyruvate synthase Overexpression of oxalate combined with overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and deletion of the phosphoenolpyruvate carboxylase gene.
在另一例示性實施例中,細胞藉由不同的適應進行基因改造,例如磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因的缺失、草醯乙酸鹽去羧酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及蘋果酸脫氫酶的過度表現 及丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因的缺失。In another exemplary embodiment, cells are genetically modified with different adaptations, such as overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and deletion of the pyruvate carboxylase gene, Overexpression of phosphoenolpyruvate synthase combined with overexpression of oxalate decarboxylase and deletion of the pyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of malate dehydrogenase and Deletion of pyruvate carboxylase gene, overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of oxaloacetate decarboxylase and deletion of pyruvate carboxylase gene, overexpression of phosphoenolpyruvate carboxykinase combined with apple Overexpression of acid dehydrogenase and deletion of pyruvate carboxylase gene, overexpression of oxalate decarboxylase combined with overexpression of malate dehydrogenase and deletion of pyruvate carboxylase gene, synthesis of phosphoenolpyruvate Enzyme overexpression combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of oxaloacetate decarboxylase and deletion of pyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with phosphoenolacetone Overexpression of acid carboxykinase and overexpression of malate dehydrogenase and deletion of pyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and oxaloacetate Overexpression of decarboxylase and overexpression of malate dehydrogenase and deletion of pyruvate carboxylase gene, overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of oxalate decarboxylase and malate dehydrogenase Enzyme overexpression and deletion of pyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and overexpression of pyruvate carboxylase gene missing.
在另一例示性實施例中,細胞藉由不同的適應進行基因改造,例如磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、草醯乙酸鹽去羧酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失。In another exemplary embodiment, cells are genetically engineered with different adaptations, such as overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and pyruvate carboxylase genes and phosphoene Deletion of alcohol pyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of oxaloacetate decarboxylase and deletion of pyruvate carboxylase gene and phosphoenolpyruvate carboxylase gene, phosphoene Overexpression of alcohol pyruvate synthase combined with overexpression of malate dehydrogenase and deletion of pyruvate carboxylase and phosphoenolpyruvate carboxylase genes, and overexpression of phosphoenolpyruvate carboxykinase combined with oxaloacetate Overexpression of decarboxylase and deletion of pyruvate carboxylase gene and phosphoenolpyruvate carboxylase gene, overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of malate dehydrogenase and pyruvate carboxylase gene and Deletion of phosphoenolpyruvate carboxylase gene, overexpression of oxalate decarboxylase combined with overexpression of malate dehydrogenase and deletion of pyruvate carboxylase and phosphoenolpyruvate carboxylase genes, phosphoene Overexpression of alcohol pyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of oxaloacetate decarboxylase and deletion of pyruvate carboxylase and phosphoenolpyruvate carboxylase genes, phosphoene Overexpression of alcohol pyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of malate dehydrogenase and deletion of pyruvate carboxylase gene and phosphoenolpyruvate carboxylase gene, phosphoenolacetone Overexpression of acid synthase combined with overexpression of phosphoenolpyruvate carboxykinase and overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and pyruvate carboxylase genes and phosphoenolpyruvate carboxylase Deletion of enzyme genes, overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and pyruvate carboxylase and phosphoenolpyruvate carboxylase genes Deletion of phosphoenolpyruvate synthase, overexpression of phosphoenolpyruvate synthase combined with overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and deletion of pyruvate carboxylase and phosphoenolpyruvate carboxylase genes .
在另一例示性實施例中,細胞藉由不同的適應進行基因改造,例如磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、草醯乙酸鹽去羧酶的過度表現結合蘋果酸脫氫酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合磷酸烯醇丙酮酸羧激酶的過度表現及草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸激酶基因的缺失和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸羧激酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失、磷酸烯醇丙酮酸合成酶的過度表現結合草醯乙酸鹽去羧酶的過度表現及蘋果酸脫氫酶的過度表現及丙酮酸激酶基因和丙酮酸羧酶基因和磷酸烯醇丙酮酸羧酶基因的缺失。In another exemplary embodiment, cells are genetically engineered with different adaptations, such as overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and the pyruvate kinase gene and pyruvate carboxykinase Deletion of enzyme gene and phosphoenolpyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of oxaloacetate decarboxylase and pyruvate kinase gene and pyruvate carboxylase gene and phosphoenol Deletion of pyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of malate dehydrogenase and deletion of pyruvate kinase gene and pyruvate carboxylase gene and phosphoenolpyruvate carboxylase gene, Overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of oxalate decarboxylase and deletion of pyruvate kinase gene and pyruvate carboxylase gene and phosphoenolpyruvate carboxylase gene, phosphoenolpyruvate carboxylase Kinase overexpression combined with malate dehydrogenase overexpression and deletion of pyruvate kinase gene and pyruvate carboxylase gene and phosphoenolpyruvate carboxylase gene, overexpression of oxalate decarboxylase combined with malate decarboxylase Overexpression of hydrogenase and deletion of pyruvate kinase gene and pyruvate carboxylase gene and phosphoenolpyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with overexpression of phosphoenolpyruvate carboxykinase and Overexpression of oxalate decarboxylase and deletion of pyruvate kinase gene and pyruvate carboxylase gene and phosphoenolpyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with phosphoenolpyruvate carboxylase Overexpression of kinases and overexpression of malate dehydrogenase and deletion of pyruvate kinase gene and pyruvate carboxylase gene and phosphoenolpyruvate carboxylase gene, overexpression of phosphoenolpyruvate synthase combined with phosphoenol Overexpression of pyruvate carboxykinase and overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and deletion of pyruvate kinase gene and deletion of pyruvate carboxylase and phosphoenolpyruvate carboxylase genes Deletion, overexpression of phosphoenolpyruvate carboxykinase combined with overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and pyruvate kinase genes and pyruvate carboxylase genes and phosphoenolpyruvate carboxylase Deletion of enzyme genes, overexpression of phosphoenolpyruvate synthase combined with overexpression of oxalate decarboxylase and overexpression of malate dehydrogenase and pyruvate kinase gene and pyruvate carboxylase gene and phosphoenol Deletion of the pyruvate carboxylase gene.
根據本發明的方法及/或細胞的另一較佳實施例,該細胞包括與未修飾的先驅細胞相比,用於降低乙酸鹽產生的修飾。該修飾可選自包括以下的群組之任一或多種:乙醯輔酶A合成酶的過度表現、丙酮酸脫氫酶、完全或部分剃除或降低功能的丙酮酸脫氫酶和完全或部分剃除或降低功能的乳酸脫氫酶。According to another preferred embodiment of the method and/or cell of the present invention, the cell comprises a modification for reducing acetate production compared to an unmodified precursor cell. The modification may be selected from any one or more of the group comprising: an overexpression of acetyl-CoA synthase, a pyruvate dehydrogenase, a fully or partially shave or reduced function pyruvate dehydrogenase, and a fully or partially Shaving or reducing the function of lactate dehydrogenase.
在本發明的方法及/或細胞的進一步實施例中,細胞在至少一種乙醯輔酶A合成酶(例如,來自大腸桿菌、啤酒酵母菌、智人、小鼠的acs)的表現或活性方面進行修飾。在較佳實施例中,該乙醯輔酶A合成酶為具有經修飾的表現或活性的細胞內源性蛋白質,較佳為該乙醯輔酶A合成酶為過度表現;或者,該乙醯輔酶A合成酶為異源性蛋白質,其異源地引入該細胞並在該細胞中表現,較佳為過度表現。該內源性乙醯輔酶A合成酶可在細胞中具有修飾的表現,該細胞亦表現異源性乙醯輔酶A合成酶。在更佳實施例中,細胞在乙醯輔酶A合成酶的表現或活性方面進行修飾,例如來自大腸桿菌(UniProt ID P27550)的acs。在另一及/或另外較佳實施例,細胞在來自大腸桿菌(UniProt ID P27550)的acs的功能性同源物、變體或衍生物的表現或活性方面進行修飾,該功能性同源物、變體或衍生物具有與來自大腸桿菌(UniProt ID P27550)的該多肽全長的至少80%整體序列同一性且具有乙醯輔酶A合成酶活性。In further embodiments of the methods and/or cells of the invention, the cells are performed with respect to the expression or activity of at least one acetyl-CoA synthase (eg, acs from E. coli, Saccharomyces cerevisiae, Homo sapiens, mice) retouch. In a preferred embodiment, the acetyl-CoA synthase is an endogenous cell protein with a modified expression or activity, preferably the acetyl-CoA synthase is overexpressed; alternatively, the acetyl-CoA A synthetase is a heterologous protein that is introduced into the cell heterologously and is expressed, preferably overexpressed, in the cell. The endogenous acetyl-CoA synthetase can have a modified expression in a cell that also expresses a heterologous acetyl-CoA synthase. In a more preferred embodiment, the cells are modified in the expression or activity of an acetyl-CoA synthase, such as acs from E. coli (UniProt ID P27550). In another and/or further preferred embodiment, the cells are modified in the expression or activity of a functional homologue, variant or derivative of acs from E. coli (UniProt ID P27550), the functional homologue , variant or derivative has at least 80% overall sequence identity to the full length of the polypeptide from Escherichia coli (UniProt ID P27550) and has acetyl-CoA synthase activity.
在本發明的方法及/或細胞的替代及/或另外進一步實施例中,細胞在至少一種丙酮酸脫氫酶(例如,來自大腸桿菌、啤酒酵母菌、智人及褐鼠)的表現或活性方面進行修飾。在較佳實施例中,藉由所屬技術領域中具通常知識者已知的手段修飾為具有至少一種部分或完全剔除或突變的丙酮酸脫氫酶編碼基因,從而產生至少一種功能較差或失能的丙酮酸脫氫酶活性的蛋白質。在更佳實施例中,細胞的poxB編碼基因被完全剃除,導致細胞缺乏丙酮酸脫氫酶活性。In alternative and/or additional further embodiments of the methods and/or cells of the invention, the cells express or have activity in at least one pyruvate dehydrogenase (eg, from Escherichia coli, Saccharomyces cerevisiae, Homo sapiens, and brown mouse) modified aspects. In a preferred embodiment, the gene encoding pyruvate dehydrogenase is modified to have at least one partial or complete deletion or mutation by means known to those of ordinary skill in the art, thereby producing at least one less functional or incapacitated gene pyruvate dehydrogenase activity of the protein. In a more preferred embodiment, the cell's poxB-encoding gene is completely shaved, resulting in a lack of pyruvate dehydrogenase activity in the cell.
在本發明的方法及/或細胞的替代及/或另外進一步實施例中,細胞在至少一種乳酸脫氫酶(例如,來自大腸桿菌、啤酒酵母菌、智人及褐鼠)的表現或活性方面進行修飾。在較佳實施例中,藉由所屬技術領域中具通常知識者已知的手段修飾為具有至少一種部分或完全剔除或突變的乳酸脫氫酶編碼基因,從而產生至少一種功能較差或失能的乳酸脫氫酶活性的蛋白質。在更佳實施例中,細胞的ldhA編碼基因被完全剃除,導致細胞缺乏乳酸脫氫酶活性。In alternative and/or additional further embodiments of the methods and/or cells of the present invention, the cells are in the expression or activity of at least one lactate dehydrogenase (eg, from Escherichia coli, Saccharomyces cerevisiae, Homo sapiens, and brown mouse) Make modifications. In a preferred embodiment, the lactate dehydrogenase encoding gene is modified to have at least one partial or complete deletion or mutation by means known to those of ordinary skill in the art, thereby producing at least one less functional or incapacitated gene. A protein with lactate dehydrogenase activity. In a more preferred embodiment, the cell's ldhA-encoding gene is completely shaved, resulting in a lack of lactate dehydrogenase activity in the cell.
根據本發明的方法及/或細胞的另一較佳實施例,該細胞包括與未修飾的先驅細胞相比,任一或多種蛋白質的較低或減少的表現及/或消除、受損、降低或延遲的活性,該蛋白質包含:β-半乳糖苷酶、半乳糖苷O-乙醯轉移酶(galactoside O-acetyltransferase)、N-乙醯葡萄糖胺-6-磷酸鹽去乙醯酶、葡萄糖胺-6-磷酸鹽脫胺酶、N-乙醯葡萄糖胺抑制蛋白、核糖核苷酸單磷酸酶、EIICBA-Nag、UDP-葡萄糖:十一異戊二烯-磷酸葡萄糖-1-磷酸轉移酶(UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase)、L-岩藻酮糖激酶(L-fuculokinase)、L-岩藻糖異構酶、N-乙醯神經胺酸解離酶(N-acetylneuraminate lyase)、N-乙醯甘露糖胺激酶、N-乙醯甘露糖胺-6-磷酸鹽2-表異構酶、EIIAB-Man、EIIC-Man、EIID-Man、ushA、半乳糖-1-磷酸鹽尿苷醯轉移酶、葡萄糖-1-磷酸鹽腺苷醯轉移酶、葡萄糖-1-磷酸酶、ATP-依賴性6-磷酸果糖激酶同功酶1、ATP-依賴性6-磷酸果糖激酶同功酶2、葡萄糖-6-磷酸鹽異構酶、有氧呼吸調控蛋白(aerobic respiration control protein)、轉錄抑制蛋白IclR、lon蛋白酶、葡萄糖特異性轉位磷酸轉移酶酶IIBC成分ptsG、葡萄糖特異性轉位磷酸轉移酶(PTS)酶IIBC成分malX、酶IIAGlc、β-葡萄糖苷特異性PTS酶II、果糖特異性PTS多磷醯轉移蛋白(fructose-specific PTS multiphosphoryl transfer protein)FruA及FruB、乙醇脫氫酶醛脫氫酶、丙酮酸-甲酸鹽解離酶、乙酸鹽激酶、磷醯基轉移酶(phosphoacyltransferase)、磷酸乙醯轉移酶(phosphate acetyltransferase)、丙酮酸去羧酶。According to another preferred embodiment of the method and/or cell of the present invention, the cell comprises lower or reduced expression and/or elimination, impairment, reduction of any one or more proteins compared to unmodified precursor cells or delayed activity, the protein contains: β-galactosidase, galactoside O-acetyltransferase, N-acetylglucosamine-6-phosphate deacetylase, glucosamine -6-phosphate deaminase, N-acetylglucosamine arrestin, ribonucleotide monophosphatase, EIICBA-Nag, UDP-glucose:undec isoprene-phosphoglucose-1-phosphotransferase ( UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase), L-fuculokinase (L-fuculokinase), L-fucose isomerase, N-acetylneuraminic acid dissociation enzyme (N-acetylneuraminate) lyase), N-acetylmannosamine kinase, N-acetylmannosamine-6-phosphate 2-epimerase, EIIAB-Man, EIIC-Man, EIID-Man, ushA, galactose-1- Phosphate uridine transferase, glucose-1-phosphate adenosyltransferase, glucose-1-phosphatase, ATP-dependent 6-phosphofructokinase isoenzyme 1, ATP-dependent 6-phosphofructokinase Isozyme 2, glucose-6-phosphate isomerase, aerobic respiration control protein, transcriptional repressor protein IclR, lon protease, glucose-specific translocation phosphotransferase IIBC component ptsG, glucose-specific Sex translocation phosphotransferase (PTS) enzyme IIBC component malX, enzyme IIAGlc, β-glucoside-specific PTS enzyme II, fructose-specific PTS multiphosphoryl transfer protein (fructose-specific PTS multiphosphoryl transfer protein) FruA and FruB, ethanol Dehydrogenase Aldehyde dehydrogenase, pyruvate-formate dissociation enzyme, acetate kinase, phosphoacyltransferase (phosphoacyltransferase), phosphate acetyltransferase (phosphate acetyltransferase), pyruvate decarboxylase.
根據本發明的方法及/或細胞的另一較佳實施例,該細胞包含至少部分失活的所選單醣、雙醣或寡醣的分解代謝途徑,該單醣、雙醣或寡醣參與還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的產生及/或為產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣所需。According to another preferred embodiment of the method and/or cell of the present invention, the cell comprises an at least partially inactivated catabolic pathway of a selected monosaccharide, disaccharide or oligosaccharide involved in reduction Required for the production of disaccharides or oligosaccharides with N-acetylglucosamine units at the end and/or for the production of disaccharides or oligosaccharides with N-acetylglucosamine units at the reducing end.
根據本發明的方法及/或細胞的另一較佳實施例,細胞使用前驅物以產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣,較佳地,該前驅物從培養基供給細胞。根據方法及/或細胞的更佳態樣,細胞使用至少兩種前驅物以產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣,較佳地,該前驅物從培養基供給細胞。根據本發明的方法及/或細胞的另一較佳態樣,細胞產生至少一種前驅物,較佳為至少兩種前驅物,以產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。在本方法及/或細胞的較佳實施例中,細胞用於產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的前驅物完全轉化為該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。According to another preferred embodiment of the method and/or cell of the present invention, the cell uses a precursor to produce a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end, preferably, the precursor is obtained from the culture medium supply cells. According to more preferred aspects of the method and/or the cell, the cell uses at least two precursors to produce a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end, preferably the precursor is supplied to the cell from the culture medium . According to another preferred aspect of the method and/or cell of the present invention, the cell produces at least one precursor, preferably at least two precursors, to produce a disaccharide having an N-acetylglucosamine unit at the reducing end or Oligosaccharides. In a preferred embodiment of the present method and/or cell, the precursor used by the cell for the production of a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end is completely converted to having N-acetylglucosamine at the reducing end Disaccharides or oligosaccharides of amine units.
根據本發明的方法及/或細胞的另一較佳實施例,細胞在整個培養液及/或上清液產生90 g/L或多於90 g/L的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。在更佳實施例中,在整個培養液及/或上清液中產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣具有至少80%的純度,其以在整個培養液及/或上清液中分別由細胞產生的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣及其前驅物的總量計。According to another preferred embodiment of the method and/or cell of the present invention, the cell has N-acetylglucosamine at the reducing end producing 90 g/L or more in the whole culture medium and/or supernatant units of disaccharides or oligosaccharides. In a more preferred embodiment, the disaccharide or oligosaccharide with N-acetylglucosamine unit at the reducing end produced in the whole culture medium and/or supernatant has a purity of at least 80%, which is sufficient in the whole culture medium and/or Or the total amount of disaccharides or oligosaccharides with N-acetylglucosamine units at the reducing end and their precursors, respectively, produced by the cells in the supernatant.
本發明的另一實施例提供一種方法及細胞,其中還原端具有GlcNAc單元的雙醣或寡醣產生在及/或由本文所述的真菌、酵母、細菌、昆蟲、動物、植物或原生動物細胞所產生。表現系統或細胞選自包括細菌、酵母或真菌的列表,或指植物或動物細胞。細胞選自包括細菌、酵母、原生動物或真菌、或者所指的植物或動物細胞之列舉。後者的細菌較佳屬於變形菌(Proteobacteria)門或厚壁菌(Firmicutes)門或藍細菌(Cyanobactria)門或者異常球菌-棲熱菌(Deinococcus-Thermus)門。屬於變形菌門的後者細菌較佳屬於腸桿菌科(Enterobacteriaceae),較佳屬於大腸桿菌種。後者細菌較佳關於屬於大腸桿菌種的任何菌株,例如但不限於大腸桿菌B、大腸桿菌C、大腸桿菌W、大腸桿菌K12、大腸桿菌Nissle。更具體而言,後者用與關於培養的大腸桿菌菌株——稱為大腸桿菌菌株K12菌株—其非常適合於實驗室環境,並且與野生型菌株不同,其已喪失了在腸中繁殖的能力。大腸桿菌菌株K12菌株的已知實例是K12野生型、W3110、MG1655、M182、MC1000、MC1060、MC1061、MC4100、JM101、NZN111和AA200。因此,本發明特別關於如上所述突變和/或轉形的大腸桿菌宿主細胞或菌株,其中該大腸桿菌菌株是K12菌株。更具體而言,大腸桿菌菌株K12菌株是大腸桿菌MG1655。屬於厚壁菌門的後者細菌較佳屬於芽孢桿菌綱(Bacilli),較佳屬於乳桿菌目(Lactobacilliales),其成員例如,乳酸乳桿菌(Lactobacillus lactis)、腸系膜明串珠菌(Leuconostoc mesenteroides),或芽孢桿菌目(Bacillales),其成員例如,來自芽孢桿菌屬,例如,枯草芽孢桿菌(Bacillus subtilis)或解澱粉芽孢桿菌( B. amyloliquefaciens)。屬於放線菌(Actinobacteria)門的後者細菌較佳屬於棒桿菌科(Corynebacteriaceae),其成員為麩胺酸棒狀桿菌或非發酵棒桿菌(C. afermentans),或屬於鏈黴菌科(Streptomycetaceae),其成員為灰鏈黴菌( Streptomyces griseus)或弗雷迪鏈黴菌( S. fradiae)。後者酵母較佳屬於子囊菌門(Ascomycota)或擔子菌門(Basidiomycota)或半知菌門(Deuteromycota)或接合菌門(Zygomycetes)。後者酵母較佳屬於酵母屬( Saccharomyces)(其成員為例如,啤酒酵母菌、貝酵母( S. bayanus )、布拉氏酵母菌( S. boulardii))、接合酵母菌屬( Zygosaccharomyces)、畢赤酵母菌屬(Pichia)(其成員為例如,巴斯德畢赤酵母( Pichia pastoris)、異常畢赤酵母( P. anomala)、克魯維畢赤酵母( P. kluyveri))、克馬格特勒酵母( Komagataella)、漢遜氏酵母菌屬( Hansenula)、克魯維酵母菌屬( Kluyveromyces)(其成員為例如,乳酸克魯維酵母、馬克斯克魯維酵母( K. marxianus)、耐熱克魯維酵母( K. thermotolerans)))、德巴利酵母菌屬( Debaromyces)、子囊菌酵母屬( Yarrowia)(其成員為例如,解脂耶氏酵母( Yarrowia lipolytica))或擬球酵母菌屬( Starmerella)(其成員為例如,球擬假絲酵母( Starmerella bombicola)。後者的酵母較佳選自巴斯德畢赤酵母、解脂耶氏酵母( Yarrowia lipolitica)、啤酒酵母菌及乳酸克魯維酵母。後者真菌較佳屬於黑黴菌屬( Rhizopus)、網柱黏菌屬( Dictyostelium)、青黴菌屬( Penicillium)、白黴菌屬( Mucor)或麴菌屬( Aspergillus)。植物細胞包括開花和非開花植物細胞,以及藻類細胞,例如單胞藻屬(Chlamydomonas)、綠球藻屬(Chlorella)等。較佳地,植物是煙草、苜蓿、稻米、番茄、棉花、油菜籽、大豆、玉米或穀類植物。後者的動物細胞較佳衍生自非人類哺乳動物(例如,牛、水牛、豬、羊、小鼠、大鼠)、鳥類(例如,雞、鴨、鴕鳥、火雞、雉)、魚類(例如,箭魚、鮭魚、鮪、海鱸、鱒魚、鯰魚)、無脊椎動物(例如,龍蝦、螃蟹、蝦、蛤蜊、牡蠣、貽貝、海膽)、爬蟲類(例如,蛇、鱷魚、烏龜)、兩棲類(例如,青蛙)或昆蟲類(例如,蒼蠅、線蟲)或為基因改造細胞株,其衍生自排除胚胎幹細胞的人類細胞。人類和非人類哺乳動物細胞均較佳選自包含上皮細胞的列舉,例如,乳腺上皮細胞、胚胎腎細胞(例如,HEK293或HEK 293T細胞)、纖維母細胞、COS細胞、中國倉鼠卵巢(CHO)細胞、鼠骨髓瘤細胞,例如N20、SP2/0或YB2/0細胞、NIH-3T3細胞、非乳腺成體幹細胞或其衍生物,如WO21067641所述。 後者的昆蟲細胞較佳衍生自秋行軍蟲(Spodoptera frugiperda),例如,Sf9或Sf21細胞、蠶(Bombyx mori)、甘藍夜蛾(Mamestra brassicae)、粉紋夜蛾(Trichoplusia ni)等,例如BTI-TN-5B1-4細胞或黑腹果蠅(Drosophila melanogaster),例如果蠅S2細胞。後者的原生動物細胞較佳為狼蛛利什曼原蟲(Leishmania tarentolae)細胞。 Another embodiment of the present invention provides a method and cell wherein a disaccharide or oligosaccharide having a GlcNAc unit at the reducing end is produced in and/or by a fungal, yeast, bacterial, insect, animal, plant or protozoan cell as described herein produced. The expression system or cell is selected from a list including bacteria, yeast or fungi, or refers to plant or animal cells. The cells are selected from a list including bacteria, yeast, protozoa or fungi, or plant or animal cells as referred to. The latter bacteria preferably belong to the phylum Proteobacteria or Firmicutes or Cyanobactria or Deinococcus-Thermus. The latter bacteria belonging to the phylum Proteobacteria preferably belong to the family Enterobacteriaceae, preferably to the species Escherichia coli. The latter bacteria preferably refer to any strain belonging to the species Escherichia coli, such as but not limited to Escherichia coli B, Escherichia coli C, Escherichia coli W, Escherichia coli K12, Escherichia coli Nissle. More specifically, the latter is used in relation to a cultured E. coli strain - termed E. coli strain K12 strain - which is very suitable for laboratory environments and which, unlike wild-type strains, has lost the ability to reproduce in the intestine. Known examples of E. coli strains K12 strains are K12 wild type, W3110, MG1655, M182, MC1000, MC1060, MC1061, MC4100, JM101, NZN111 and AA200. Accordingly, the present invention particularly relates to a mutated and/or transformed E. coli host cell or strain as described above, wherein the E. coli strain is a K12 strain. More specifically, the E. coli strain K12 strain is E. coli MG1655. The latter bacteria belonging to the phylum Firmicutes preferably belong to the class Bacilli, preferably the order Lactobacilliales, members of which are, for example, Lactobacillus lactis, Leuconostoc mesenteroides, or Order of the Bacillales, members of which are, for example, from the genus Bacillus, eg, Bacillus subtilis or B. amyloliquefaciens . The latter bacteria belonging to the phylum Actinobacteria preferably belong to the family Corynebacteriaceae, whose members are Corynebacterium glutamicum or C. afermentans, or belong to the family Streptomycetaceae, whose members are Members are Streptomyces griseus or S. fradiae . The latter yeast preferably belongs to the phylum Ascomycota or Basidiomycota or Deuteromycota or Zygomycetes. The latter yeast preferably belongs to the genus Saccharomyces (whose members are, for example, Saccharomyces cerevisiae, S. bayanus , S. boulardii ), Zygosaccharomyces , Pichia Pichia (whose members are, for example, Pichia pastoris , P. anomala , P. kluyveri ), Kermagtler Yeast ( Komagataella ), Hansenula ( Hansenula ), Kluyveromyces ( Kluyveromyces ) (whose members are, for example, Kluyveromyces lactis, K. marxianus, Kluyveromyces thermotolerant ( K. thermotolerans )), Debaromyces , Yarrowia (members of which are, for example, Yarrowia lipolytica ), or Todococcus ( Starmerella ) (whose members are, for example, Starmerella bombicola . The latter yeast is preferably selected from Pichia pastoris, Yarrowia lipolytica , Saccharomyces cerevisiae and Kluyveromyces lactis Yeast. The latter fungi preferably belong to the genera Rhizopus , Dictyostelium , Penicillium , Mucor or Aspergillus . Plant cells include flowering and non- Flowering plant cells, as well as algal cells such as Chlamydomonas, Chlorella, etc. Preferably, the plants are tobacco, alfalfa, rice, tomato, cotton, rapeseed, soybean, corn or cereal Plants. The latter animal cells are preferably derived from non-human mammals (eg, cattle, buffalo, pigs, sheep, mice, rats), birds (eg, chickens, ducks, ostriches, turkeys, pheasants), fish ( For example, swordfish, salmon, tuna, sea bass, trout, catfish), invertebrates (for example, lobster, crab, shrimp, clams, oysters, mussels, sea urchins), reptiles (for example, snakes, alligators, turtles) ), amphibians (e.g. frogs) or insects (e.g. flies, nematodes) or are genetically modified cell lines derived from human cells excluding embryonic stem cells. Both human and non-human mammalian cells are preferably selected from epithelial cells containing An enumeration of cells, eg, mammary epithelial cells, embryonic kidney cells (eg, HEK293 or HEK 293T cells), fibroblasts, COS cells, Chinese Hamster Ovary (CHO) cells, murine myeloma cells such as N20, SP2/0 or YB2/0 cells, NIH-3T3 cells, non-mammary adult stem cells or derivatives thereof, as described in WO21067641. The latter insect cells are preferably derived from Spodoptera frugiperda, for example, Sf9 or Sf21 cells, Bombyx mori, Mamestra brassicae, Trichoplusia ni, etc., such as BTI- TN-5B1-4 cells or Drosophila melanogaster, eg Drosophila S2 cells. The latter protozoan cells are preferably Leishmania tarentolae cells.
在本發明的方法及/或細胞的較佳實施例中,細胞為活的革蘭氏陰性菌,其包含與未修飾的先驅細胞相比,降低或消除聚-N-乙醯-葡萄糖胺(PNAG)、腸細菌共同抗原(ECA)、纖維素、可拉酸(colanic acid)、核心寡醣、滲壓調節間質葡聚糖(Osmoregulated Periplasmic Glucan,OPG)、葡萄糖基甘油(Glucosylglycerol)、聚醣及/或海藻糖的合成。In a preferred embodiment of the method and/or cell of the present invention, the cell is a live Gram-negative bacterium comprising reduced or eliminated poly-N-acetyl-glucosamine ( PNAG), Enterobacterial Common Antigen (ECA), Cellulose, Colanic Acid, Core Oligosaccharide, Osmoregulated Periplasmic Glucan (OPG), Glucosylglycerol, Polyglycerol Synthesis of sugars and/or trehalose.
在方法及/或細胞的更佳實施例中,該降低或消除聚-N-乙醯-葡萄糖胺(PNAG)、腸細菌共同抗原(ECA)、纖維素、可拉酸、核心寡醣、滲壓調節間質葡聚糖(OPG)、葡萄糖基甘油、聚醣及/或海藻糖的合成是由參與該聚-N-乙醯-葡萄糖胺(PNAG)、腸細菌共同抗原(ECA)、纖維素、可拉酸、核心寡醣、滲壓調節間質葡聚糖(OPG)、葡萄糖基甘油、聚醣及/或海藻糖中的任一合成的任一或多種醣基轉移酶的突變所提供,其中該突變提供任一種該醣基轉移酶的缺失或較低的表現。該醣基轉移酶包括醣基轉移酶基因,其編碼聚-N-乙醯-D-葡萄糖胺合成酶子單元、UDP-N-乙醯葡萄糖胺—十一異戊二烯-磷酸N-乙醯葡萄糖胺磷酸轉移酶、Fuc4NAc(4-乙醯胺基-4,6-雙去氧-D-半乳糖)轉移酶、UDP-N-乙醯基-D-甘露糖胺糖醛酸轉移酶(UDP-N-acetyl-D-mannosaminuronic acid transferase)、編碼纖維素合成酶催化子單元的醣基轉移酶基因、纖維素生物合成蛋白、可拉酸生物合成葡萄糖醛酸轉移酶(colanic acid biosynthesis glucuronosyltransferase)、可拉酸生物合成半乳糖基轉移酶、可拉酸生物合成岩藻糖基轉移酶、UDP-葡萄糖:十一異戊二烯-磷酸葡萄糖-1-磷酸轉移酶、推定的結腸生物合成醣基轉移酶(putative colanic biosynthesis glycosyl transferase)、UDP-葡萄糖醛酸鹽:LPS(HepIII)醣基轉移酶、ADP-庚糖—LPS庚糖基轉移酶(heptosyltransferase)2、ADP-庚糖:LPS庚糖基轉移酶1、推定的ADP-庚糖:LPS庚糖基轉移酶4、脂多醣核心生物合成蛋白、UDP-葡萄糖:(葡萄糖基)LPS α-1,2-葡萄糖基轉移酶、UDP-D-葡萄糖:(葡萄糖基)LPS α-1,3-葡萄糖基轉移酶、UDP-D-半乳糖:(葡萄糖基)脂多醣-1,6-D-半乳糖基轉移酶、脂多醣葡萄糖基轉移酶I、脂多醣核心庚糖基轉移酶3、β-1,6-呋喃半乳糖基轉移酶(β-1,6-galactofuranosyltransferase)、十一異戊二烯-磷酸4-去氧-4-甲磺醯胺-L-阿拉伯糖轉移酶、脂質IVA 4-胺基-4-去氧-L-阿拉伯糖基轉移酶、細菌萜醇葡萄糖基轉移酶(bactoprenol glucosyl transferase)、堆定的家族2醣基轉移酶、滲壓調節間質葡聚糖(OPG)生物合成G、OPG生物合成H、葡萄糖基甘油酸酯(glucosylglycerate)磷酸化酶、酐醣合成酶(glycogen synthase)、1,4-α-葡聚糖分支酶、4-α葡聚糖轉移酶(4-α-glucanotransferase)及海藻糖-6-磷酸鹽合成酶。在例示性實施例中。細胞在包含pgaC、pgaD、rfe、rffT、rffM、bcsA、bcsB、bcsC、wcaA、wcaC、wcaE、wcaI、wcaJ、wcaL、waaH、waaF、waaC、waaU、waaZ、waaJ、waaO、waaB、waaS、waaG、waaQ、wbbl、arnC、arnT、yfdH、wbbK、opgG、opgH、ycjM、glgA、glgB、malQ、otsA及yaiP的任一或多種醣基轉移酶中發生突變,其中該突變提供該醣基轉移酶中任一的缺失或較低的表現。In more preferred embodiments of the method and/or cell, the reduction or elimination of poly-N-acetyl-glucosamine (PNAG), enterobacterial common antigen (ECA), cellulose, kolaric acid, core oligosaccharide, osmotic The synthesis of pressure-regulated interstitial glucan (OPG), glucosylglycerol, glycan and/or trehalose is involved in the synthesis of the poly-N-acetyl-glucosamine (PNAG), enterobacterial common antigen (ECA), fiber Mutation of any one or more glycosyltransferases synthesized in any one of oxalate, kolaric acid, core oligosaccharide, osmotic pressure-regulating interstitial glucan (OPG), glucosylglycerol, glycan, and/or trehalose. Provided, wherein the mutation provides deletion or lower performance of any one of the glycosyltransferases. The glycosyltransferase includes a glycosyltransferase gene encoding a poly-N-acetyl-D-glucosamine synthase subunit, UDP-N-acetylglucosamine-undec isoprene-phosphate N-ethyl Acetylglucosamine phosphotransferase, Fuc4NAc (4-acetamido-4,6-dideoxy-D-galactose) transferase, UDP-N-acetyl-D-mannosamine uronyltransferase (UDP-N-acetyl-D-mannosaminuronic acid transferase), glycosyltransferase gene encoding the catalytic subunit of cellulose synthase, cellulose biosynthesis protein, colanic acid biosynthesis glucuronosyltransferase ), colaric acid biosynthetic galactosyltransferase, colaric acid biosynthetic fucosyltransferase, UDP-glucose:undec isoprene-phosphoglucose-1-phosphotransferase, putative colonic biosynthesis Glycosyltransferase (putative colanic biosynthesis glycosyl transferase), UDP-glucuronate: LPS (HepIII) glycosyl transferase, ADP-heptose-LPS heptosyltransferase (heptosyltransferase) 2, ADP-heptose: LPS Heptosyltransferase 1, putative ADP-heptose: LPS heptosyltransferase 4, lipopolysaccharide core biosynthesis protein, UDP-glucose: (glucosyl)LPS α-1,2-glucosyltransferase, UDP -D-glucose: (glucosyl)LPS α-1,3-glucosyltransferase, UDP-D-galactose: (glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase, lipopolysaccharide glucose Syltransferase I, lipopolysaccharide core heptosyltransferase 3, β-1,6-galactofuranosyltransferase (β-1,6-galactofuranosyltransferase), undecyisoprene-phosphate 4-deoxy- 4-Methylsulfonamide-L-arabinosyltransferase, lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase, bactoprenol glucosyl transferase, pyrimidine Family 2 glycosyltransferases, osmotic pressure-regulated interstitial glucan (OPG) biosynthesis G, OPG biosynthesis H, glucosylglycerate phosphorylase, glycogen synthase, 1, 4-α-glucan branching enzyme, 4-α-glucanotransferase (4-α-glucanotransferase) and trehalose-6-phosphate synthase. in an exemplary embodiment. Cells containing pgaC, pgaD, rfe, rffT, rffM, bcsA, bcsB, bcsC, wcaA, wcaC, wcaE, wcaI, wcaJ, wcaL, waaH, waaF, waaC, waaU, waaZ, waaJ, waaO, waaB, waaS, waaG , waaQ, wbbl, arnC, arnT, yfdH, wbbK, opgG, opgH, ycjM, glgA, glgB, malQ, otsA, and yaiP in any one or more of the glycosyltransferases, wherein the mutation provides the glycosyltransferase Either the absence or lower performance.
在方法及/或細胞的替代及/或另外較佳實施例中,該降低或消除聚-N-乙醯-葡萄糖胺(PNAG)的合成是藉由碳儲存調節子編碼基因的過度表現、Na+/H+反向運輸調節劑編碼基因的缺失及/或感測器組胺酸激酶編碼基因的缺失提供。In alternative and/or additional preferred embodiments of the method and/or cell, the reduction or elimination of poly-N-acetyl-glucosamine (PNAG) synthesis is by overexpression of a gene encoding a carbon storage regulator, Na+ Deletion of the gene encoding the /H+ reverse transport regulator and/or deletion of the gene encoding the sensor histidine kinase is provided.
如本文所述的微生物或細胞能夠在單醣、雙醣、寡醣、多醣、多元醇、甘油、包括糖蜜、玉米漿、蛋白腖、胰蛋白腖、酵母萃取物的複合培養基或其混合物(例如,混合原料,較佳為混合單醣原料,例如水解蔗糖)作為主要碳源上生長。用語「複合培養基(complex medium)」是指其未定義的精確構成介質。該用與主要是指所關注的生物產品、生質形成、二氧化碳及/或副產物形成(例如,酸及/或醇,例如乙酸鹽、乳酸及/或乙醇)的最重要的碳源,即所有所需碳的20、30、40、50、60、70、75、80、85、90、95、98、99%來自上述所指碳源。在本發明的實施例中,該碳源是該生物體的唯一碳源,即所有所需碳的100%源自上述所指碳源。通常主要碳源包括但不限於葡萄糖、甘油、果糖、麥芽糖、乳糖、阿拉伯糖、麥芽-寡醣、麥芽三糖、山梨醇、木糖、鼠李糖、蔗糖、半乳糖、甘露糖、甲醇、乙醇、海藻糖、澱粉、纖維素、半纖維素、糖蜜、玉米浸液、高果糖漿、乙酸鹽、檸檬酸鹽、乳酸和丙酮酸。用語複合培養基是指其未定義的精確構成介質。實例為糖蜜、玉米漿、蛋白腖、胰蛋白腖或酵母萃取物。Microorganisms or cells as described herein can be cultured on monosaccharides, disaccharides, oligosaccharides, polysaccharides, polyols, glycerol, complex media including molasses, corn steep liquor, proteus, trypsin, yeast extract, or mixtures thereof (eg, mixed Feedstock, preferably mixed monosaccharide feedstock such as hydrolyzed sucrose) as the main carbon source for growth. The term "complex medium" refers to its undefined precise constituent medium. This term primarily refers to the most important carbon source for the biological product of interest, biomass formation, carbon dioxide and/or by-product formation (eg, acids and/or alcohols such as acetate, lactic acid, and/or ethanol), i.e. 20, 30, 40, 50, 60, 70, 75, 80, 85, 90, 95, 98, 99% of all required carbons come from the carbon sources referred to above. In an embodiment of the present invention, the carbon source is the sole carbon source of the organism, ie 100% of all required carbon is derived from the carbon source referred to above. Usually major carbon sources include but are not limited to glucose, glycerol, fructose, maltose, lactose, arabinose, malto-oligosaccharide, maltotriose, sorbitol, xylose, rhamnose, sucrose, galactose, mannose, Methanol, ethanol, trehalose, starch, cellulose, hemicellulose, molasses, corn infusion, high fructose syrup, acetate, citrate, lactic acid and pyruvic acid. The term complex medium refers to its undefined precise constituent medium. Examples are molasses, corn steep liquor, egg whites, trypsin or yeast extract.
在進一步較佳實施例中,此處描述的微生物或細胞使用具有產生途徑和生質途徑的分裂代謝,如WO2012/007481所述,其藉由併入本文作為參照。可以例如藉由改變選自以下的基因而對該生物體進行基因改造以累積果糖-6-磷酸鹽,該基因選自:磷酸葡萄糖異構酶(phosphoglucoisomerase)基因、磷酸果糖激酶基因、果糖-6-磷酸鹽醛醇縮酶基因、果糖異構酶基因及/或果糖:PEP磷酸轉移酶基因。In a further preferred embodiment, the microorganisms or cells described herein use a split metabolism with a production pathway and a biomass pathway, as described in WO2012/007481, which is incorporated herein by reference. The organism can be genetically modified to accumulate fructose-6-phosphate, for example, by altering a gene selected from the group consisting of: phosphoglucoisomerase gene, phosphofructokinase gene, fructose-6 - Phosphate aldolase gene, fructose isomerase gene and/or fructose:PEP phosphotransferase gene.
根據本發明方法的另一實施例中,允許產生該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的條件包括使用包含至少一種前驅物及/或接受者的培養基以用於產生該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。較佳地,培養基包含選自包括乳糖、半乳糖、岩藻糖、唾液酸的群組的至少一種前驅物。In another embodiment of the method according to the invention, the conditions allowing the production of the disaccharide or oligosaccharide having N-acetylglucosamine units at the reducing end include the use of a medium comprising at least one precursor and/or acceptor for production A disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end. Preferably, the medium comprises at least one precursor selected from the group comprising lactose, galactose, fucose, sialic acid.
根據本發明方法的替代及/或另外的實施例,允許產生該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的條件包括向培養基添加至少一種前驅物及/或接受者原料以用於產生該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。According to alternative and/or additional embodiments of the methods of the present invention, the conditions allowing the production of the disaccharide or oligosaccharide having N-acetylglucosamine units at the reducing end include adding to the culture medium at least one precursor and/or acceptor feedstock to For the production of disaccharides or oligosaccharides with N-acetylglucosamine units at the reducing end.
根據本發明方法的替代實施例,允許產生該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的條件包括使用培養基培養本發明的細胞以產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣,其中該培養基缺乏用於產生該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的任何前驅物及/或接受者,並且進一步結合向該培養基添加至少一種前驅物及/或接受者原料以用於產生該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。According to an alternative embodiment of the method of the present invention, the conditions allowing the production of the disaccharide or oligosaccharide having N-acetylglucosamine units at the reducing end include culturing the cells of the invention with a medium to produce N-acetylglucosamine units at the reducing end The disaccharide or oligosaccharide, wherein the medium lacks any precursor and/or acceptor for the production of the disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end, and further in combination with adding to the medium at least one Precursor and/or acceptor feedstock for producing the disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end.
在較佳實施例中,如本文所述的用於產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之方法,其包括以下步驟中的至少一者: i) 使用包括至少一種前驅物及/或接受者的培養基; ii) 向反應器中的培養基添加至少一種前驅物及/或接受者原料,其中總反應器體積範圍為250 mL(毫升)至10,000 m 3(立方米),較佳以連續方式,並且較佳使得培養基的最終體積不超過在添加該前驅物及/或接受者原料之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍; iii) 向反應器中的培養基添加至少一種前驅物及/或接受者原料,較佳以連續方式,並且較佳使得培養基的最終體積不超過在添加該前驅物及/或接受者原料之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍,且其中較佳地,該前驅物及/或接受者原料的pH設定在3與7之間,且其中較佳地,該前驅物及/或接受者原料的溫度維持在20°C與80°C之間; iv) 藉由進料溶液的手段在1天、2天、3天、4天、5天的過程中以連續方式添加至少一種前驅物及/或接受者原料至培養基; v) 藉由進料溶液的手段在1天、2天、3天、4天、5天的過程中以連續方式添加至少一種前驅物及/或接受者原料至培養基,且其中較佳地,該進料溶液的pH設定在3與7之間,且其中較佳地,該進料溶液的溫度維持在20°C與80°C之間; 該方法產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣,其在最終培養物中的濃度為至少50g/L,較佳為至少75g/L,更佳為至少90g/L,更佳為至少100g/L,更佳為至少125g/L,更佳為至少150g/L,更佳為至少175g/L,更佳為至少200g/L。 In a preferred embodiment, a method for producing a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end, as described herein, comprises at least one of the following steps: i) using a method comprising at least a precursor and/or acceptor medium; ii) adding at least one precursor and/or acceptor feedstock to the medium in a reactor, wherein the total reactor volume ranges from 250 mL (milliliters) to 10,000 m 3 (cubic meters) ), preferably in a continuous manner, and preferably such that the final volume of the medium does not exceed three times the volume of the medium before adding the precursor and/or recipient feedstock, preferably not more than twice, more preferably less than twice; iii) adding at least one precursor and/or acceptor feed to the medium in the reactor, preferably in a continuous manner, and preferably such that the final volume of the medium does not exceed the medium prior to the addition of the precursor and/or acceptor feed three times the volume, preferably no more than twice, more preferably less than twice, and wherein preferably the pH of the precursor and/or recipient feedstock is set between 3 and 7, and wherein preferably the pH The temperature of the precursor and/or recipient feedstock is maintained between 20°C and 80°C; iv) by means of feeding the solution during 1 day, 2 days, 3 days, 4 days, 5 days with adding at least one precursor and/or acceptor feedstock to the culture medium in a continuous manner; v) adding at least one precursor in a continuous manner over the course of 1 day, 2 days, 3 days, 4 days, 5 days by means of the feeding solution and/or recipient feedstock to the culture medium, and wherein preferably the pH of the feed solution is set between 3 and 7, and wherein preferably the temperature of the feed solution is maintained between 20°C and 80°C Between C; the method produces disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end at a concentration in the final culture of at least 50 g/L, preferably at least 75 g/L, more preferably At least 90 g/L, more preferably at least 100 g/L, more preferably at least 125 g/L, more preferably at least 150 g/L, more preferably at least 175 g/L, more preferably at least 200 g/L.
在另一及/或另外較佳實施例,如本文所述的用於產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之方法,其包括以下步驟中的至少一者: i) 使用每公升初始反應器體積包含至少50克,更佳為至少75克,更佳為至少100克,更佳為至少120克,更佳為至少150克乳糖的培養基,其中反應器體積為250 mL至10,000 m 3(立方米); ii) 以一次脈衝輸送或以不連續(脈衝輸送)方式將至少一種前驅物及/或接受者添加至培養基,其中總反應器體積範圍為250 mL(毫升)至10,000 m 3(立方米),較佳地使得培養基的最終體積不超過在添加該前驅物及/或接受者原料脈衝之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍; iii) 以一次脈衝輸送或以不連續(脈衝輸送)方式向反應器中的培養基添加至少一種前驅物及/或接受者原料,其中總反應器體積範圍為250 mL(毫升)至10,000 m 3(立方米),較佳使得培養基的最終體積不超過在添加該前驅物及/或接受者原料脈衝之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍,且其中該前驅物及/或接受者原料脈衝的pH設定在3與7之間,且其中較佳地,該前驅物及/或接受者原料脈衝的溫度維持在20°C與80°C之間; iv) 藉由進料溶液的手段在5分鐘、10分鐘、30分鐘、1小時、2小時、4小時、10小時、12小時、1天、2天、3天、4天、5天的過程中以不連續(脈衝輸送)方式添加至少一種前驅物及/或接受者原料至培養基; v) 藉由進料溶液的手段在5分鐘、10分鐘、30分鐘、1小時、2小時、4小時、10小時、12小時、1天、2天、3天、4天、5天的過程中以不連續(脈衝輸送)方式添加至少一種前驅物及/或接受者原料至培養基,且其中該進料溶液的pH設定在3與7之間,且其中較佳地,該進料溶液的溫度維持在20°C與80°C之間; 該方法產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣,其在最終培養物中的濃度為至少50g/L,較佳為至少75g/L,更佳為至少90g/L,更佳為至少100g/L,更佳為至少125g/L,更佳為至少150g/L,更佳為至少175g/L,更佳為至少200g/L。 In another and/or further preferred embodiment, a method for producing a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end, as described herein, comprises at least one of the following steps: i) Use medium containing at least 50 grams, more preferably at least 75 grams, more preferably at least 100 grams, more preferably at least 120 grams, more preferably at least 150 grams of lactose per liter of initial reactor volume, wherein the reactor volume is 250 mL to 10,000 m 3 (cubic meters); ii) at least one precursor and/or acceptor is added to the culture medium in one pulse delivery or discontinuously (pulse delivery) with a total reactor volume ranging from 250 mL ( milliliters) to 10,000 m3 (cubic meters), preferably such that the final volume of the medium is no more than three times, preferably no more than twice the volume of the medium before the addition of the precursor and/or recipient feedstock pulse, more preferably less than twice; iii) adding at least one precursor and/or acceptor feedstock to the culture medium in the reactor in a single pulse delivery or in a discontinuous (pulsed delivery) manner with a total reactor volume ranging from 250 mL (milliliters) to 10,000 m3 (cubic meters), preferably such that the final volume of the medium does not exceed three times, preferably not more than twice, more preferably less than twice the volume of the medium before adding the precursor and/or recipient feedstock pulse, And wherein the pH of the pulse of the precursor and/or the recipient feedstock is set between 3 and 7, and wherein preferably, the temperature of the precursor and/or the recipient feedstock pulse is maintained between 20°C and 80°C. iv) by means of feeding solution at 5 minutes, 10 minutes, 30 minutes, 1 hour, 2 hours, 4 hours, 10 hours, 12 hours, 1 day, 2 days, 3 days, 4 days, 5 days Add at least one precursor and/or acceptor feedstock to the culture medium in a discontinuous (pulsed delivery) manner; v) by means of feeding solution at 5 minutes, 10 minutes, 30 minutes, 1 hour, 2 hours, at least one precursor and/or acceptor feedstock is added to the culture medium in a discontinuous (pulsed) manner over the course of 4 hours, 10 hours, 12 hours, 1 day, 2 days, 3 days, 4 days, 5 days, and wherein The pH of the feed solution is set between 3 and 7, and wherein preferably the temperature of the feed solution is maintained between 20°C and 80°C; the process produces N-acetylglucose at the reducing end A disaccharide or oligosaccharide of amine units at a concentration in the final culture of at least 50 g/L, preferably at least 75 g/L, more preferably at least 90 g/L, more preferably at least 100 g/L, more preferably At least 125 g/L, more preferably at least 150 g/L, more preferably at least 175 g/L, more preferably at least 200 g/L.
在進一步更佳的實施例中,如本文所述的用於產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之方法,其包括以下步驟中的至少一者: i) 使用每公升初始反應器體積包含至少50克,更佳為至少75克,更佳為至少100克,更佳為至少120克,更佳為至少150克乳糖的培養基,其中反應器體積範圍為250 mL至10,000 m 3(立方米); ii) 添加每公升初始反應器體積包含至少50克,更佳為至少75克,更佳為至少100克,更佳為至少120克,更佳為至少150克乳糖的乳糖原料至培養基,其中總反應器體積範圍為250 mL(毫升)至10,000 m 3(立方米),較佳以連續方式,且較佳使得培養基的最終體積不超過在添加該乳糖原料之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍; iii) 添加每公升初始反應器體積包含至少50克,更佳為至少75克,更佳為至少100克,更佳為至少120克,更佳為至少150克乳糖的乳糖原料至培養基,其中反應器體積範圍為250 mL至10,000 m 3(立方米),較佳以連續方式,且較佳使得培養基的最終體積不超過在添加該乳糖原料之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍,且其中較佳地,該乳糖原料的pH設定在3與7之間,且其中較佳地,該乳糖原料的溫度維持在20°C與80°C之間; iv) 藉由進料溶液的手段在1天、2天、3天、4天、5天的過程中以連續方式添加乳糖原料至培養基; v) 藉由進料溶液的手段在1天、2天、3天、4天、5天的過程中以連續方式添加乳糖原料至培養基,且其中該乳糖進料溶液的濃度為50 g/L,較佳為75 g/L,更佳為100 g/L,更佳為125 g/L,更佳為150 g/L,更佳為175 g/L,更佳為200 g/L,更佳為225 g/L,更佳為250 g/L,更佳為275 g/L,更佳為300 g/L,更佳為325 g/L,更佳為350 g/L,更佳為375 g/L,更佳為400 g/L,更佳為450 g/L,更佳為500 g/L,又更佳為550 g/L,最佳為600 g/L;且其中較佳地,該進料溶液的pH設定在3與7之間,且其中較佳地,該進料溶液的溫度維持在20°C與80°C之間; 該方法產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣,其在最終培養物中的濃度為至少50g/L,較佳為至少75g/L,更佳為至少90g/L,更佳為至少100g/L,更佳為至少125g/L,更佳為至少150g/L,更佳為至少175g/L,更佳為至少200g/L。 In a further preferred embodiment, a method for producing a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end, as described herein, comprises at least one of the following steps: i) using Medium containing at least 50 grams, more preferably at least 75 grams, more preferably at least 100 grams, more preferably at least 120 grams, more preferably at least 150 grams of lactose per liter of initial reactor volume, wherein the reactor volume ranges from 250 mL up to 10,000 m 3 (cubic meters); ii) addition to contain at least 50 grams, more preferably at least 75 grams, more preferably at least 100 grams, more preferably at least 120 grams, more preferably at least 150 grams per liter of initial reactor volume added Lactose feed to medium for lactose, wherein the total reactor volume ranges from 250 mL (milliliters) to 10,000 m3 (cubic meters), preferably in a continuous manner, and preferably such that the final volume of the medium does not exceed that prior to addition of the lactose feed three times the volume of medium, preferably not more than twice, more preferably less than twice; iii) adding at least 50 grams per liter of initial reactor volume, more preferably at least 75 grams, more preferably at least 100 grams, more preferably Lactose feed to medium of at least 120 grams, more preferably at least 150 grams of lactose, with reactor volumes ranging from 250 mL to 10,000 m3 (cubic meters), preferably in a continuous manner, and preferably such that the final volume of the medium does not vary. more than three times the volume of the medium before adding the lactose feedstock, preferably no more than twice, more preferably less than twice, and wherein preferably the pH of the lactose feedstock is set between 3 and 7, and wherein preferably The temperature of the lactose feedstock is maintained between 20°C and 80°C; iv) by means of feeding the solution in a continuous manner over the course of 1 day, 2 days, 3 days, 4 days, 5 days Lactose feedstock to the culture medium; v) adding lactose feedstock to the culture medium in a continuous manner over the course of 1 day, 2 days, 3 days, 4 days, 5 days by means of the feed solution, and wherein the concentration of the lactose feed solution 50 g/L, preferably 75 g/L, more preferably 100 g/L, more preferably 125 g/L, more preferably 150 g/L, more preferably 175 g/L, more preferably 200 g/L, better is 225 g/L, better is 250 g/L, better is 275 g/L, better is 300 g/L, better is 325 g/L, better is 350 g/L L, better 375 g/L, better 400 g/L, better 450 g/L, better 500 g/L, still better 550 g/L, better 600 g/L And wherein preferably, the pH of this feed solution is set between 3 and 7, and wherein preferably, the temperature of this feed solution is maintained between 20 ℃ and 80 ℃; This method produces in reducing A disaccharide or oligosaccharide with an N-acetylglucosamine unit at the end at a concentration of at least 50 g/L, preferably at least 75 g/L in the final culture g/L, more preferably at least 90 g/L, more preferably at least 100 g/L, more preferably at least 125 g/L, more preferably at least 150 g/L, more preferably at least 175 g/L, more preferably at least 200 g/L L.
在本文所述的方法的進一步實施例中,宿主細胞培養至少約60、80、100或約120小時或以連續方式培養。In further embodiments of the methods described herein, the host cells are cultured for at least about 60, 80, 100, or about 120 hours or in a continuous manner.
在較佳實施例中,在培養基中提供碳源(較佳為蔗糖)持續3天或3天以上,較佳為長達7天; 及/或在培養基中以連續方式提供每公升初始培養體積至少100克,較佳為至少105克,更佳為至少110克,又更佳為至少120克蔗糖,使得培養基的最終體積不超過培養前培養基體積的三倍,較佳為不超過兩倍,更佳為小於兩倍。In a preferred embodiment, the carbon source (preferably sucrose) is provided in the medium for 3 days or more, preferably up to 7 days; and/or the medium is provided in a continuous manner per liter of initial culture volume at least 100 grams, preferably at least 105 grams, more preferably at least 110 grams, still more preferably at least 120 grams of sucrose, so that the final volume of the medium does not exceed three times, preferably not more than twice, the volume of the medium before culturing, More preferably, it is less than twice.
較佳地,當進行如本文所述的方法時,在第二階段將前驅物添加至培養物之前,藉由向培養基添加碳源(較佳為葡萄糖或蔗糖)而提供指數細胞生長的第一階段。Preferably, when carrying out the method as described herein, a first step of exponential cell growth is provided by adding a carbon source (preferably glucose or sucrose) to the culture medium prior to adding the precursor to the culture in the second stage. stage.
在本發明方法之另一較佳實施例中,藉由向包含前驅物的培養基添加碳類基質(較佳為葡萄糖或蔗糖)而提供指數細胞生長的第一階段,接著在第二階段,其中僅將碳類基質(較佳為葡萄糖或蔗糖)添加到培養物中。In another preferred embodiment of the method of the present invention, a first stage of exponential cell growth is provided by adding a carbon-based substrate (preferably glucose or sucrose) to the medium comprising the precursor, followed by a second stage, wherein Only a carbon-based substrate (preferably glucose or sucrose) is added to the culture.
在本發明方法之另一較佳實施例中,藉由向包含前驅物的培養基中加入碳類基質(較佳為葡萄糖或蔗糖)而提供指數細胞生長的第一階段,接著在第二階段,其中碳類基質(較佳為葡萄糖或蔗糖)及前驅物添加到培養物中。In another preferred embodiment of the method of the present invention, a first stage of exponential cell growth is provided by adding a carbon-based substrate (preferably glucose or sucrose) to the medium containing the precursor, followed by a second stage, Among them, a carbon-based substrate (preferably glucose or sucrose) and a precursor are added to the culture.
在替代性較佳實施例中,如本文所述的方法,前驅物已在指數增長的第一階段與碳類基質一起添加。In an alternative preferred embodiment, the precursor has been added with the carbon-based matrix in the first stage of exponential growth, as described herein.
如本文所述的用於產生在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之方法,其進一步包括:自細胞或其生長的培養基中分離該還原端具有GlcNAc單元的雙醣或寡醣之步驟。A method for producing a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end as described herein, further comprising: isolating the disaccharide having a GlcNAc unit at the reducing end from the cell or the medium in which it is grown or oligosaccharide step.
用與「分離(separating)」是指從細胞及/或其生長的培養基中收穫、收集或回收還原端具有GlcNAc單元的雙醣或寡醣或其混合物。Use and "separating" refer to harvesting, collecting or recovering disaccharides or oligosaccharides or mixtures thereof having GlcNAc units at the reducing end from cells and/or the medium in which they are grown.
在還原端具有GlcNAc單元的雙醣或寡醣可以常規方式從細胞在其中生長的水性培養基中分離。在還原端具有GlcNAc單元的雙醣或寡醣仍然存在於產生還原端具有GlcNAc單元的雙醣或寡醣的細胞中的情況下,則能夠使用常規方法以釋放或萃取還原端具有GlcNAc單元的雙醣或寡醣至細胞外,如使用高pH、熱休克、音振、法式壓碎、均質化、酶水解、化學水解、溶劑水解、清潔劑、水解等破壞細胞。接著可將培養基及/或細胞萃取物一起和單獨地進一步用於分離還原端具有GlcNAc單元的雙醣或寡醣。此較佳地包括使含有還原端具有GlcNAc單元的雙醣或寡醣的混合物澄清以去除懸浮顆粒及污染物,特別是細胞、細胞成分、不溶性代謝物和藉由培養基因改造細胞產生的碎片。在此步驟中,在含有還原端具有GlcNAc單元的雙醣或寡醣的混合物可以常規方式進行澄清。較佳地,在含有還原端具有GlcNAc單元的雙醣或寡醣的混合物藉由離心、凝聚、傾析及/或過濾進行澄清。自含有還原端具有GlcNAc單元的雙醣或寡醣的混合物分離還原端具有GlcNAc單元的雙醣或寡醣的另一步驟較佳包括自含有還原端具有GlcNAc單元的雙醣或寡醣的混合物,較佳地在進行澄清之後,實質上去除所有蛋白質,以及胜肽、胺基酸、RNA及DNA和任何內毒素和醣脂,其可能會干擾隨後的分離步驟。在此步驟中,可以常規方式自含有還原端具有GlcNAc單元的雙醣或寡醣的混合物去除蛋白質和相關雜質。較佳地,藉由超微過濾、 奈米過濾、兩相分配、逆滲透、微過濾、活性炭或碳處理、非離子界面活性劑處理、酶消化、切向流(tangential flow)高性能過濾、切向流超微過濾、電泳(例如,使用平板-聚丙烯醯胺或十二烷基硫酸鈉-聚丙烯醯胺凝膠電泳(PAGE))、親和層析(使用親和配體,包括例如DEAE-Sepharose、聚-L-離胺酸及多黏菌素-B(polymyxin-B)、內毒素選擇性吸附劑基質)、離子交換層析(例如但不限於,陽離子交換、陰離子交換、混合床離子交換、裏面朝外配體連接(inside-out ligand attachment))、疏水交互作用層析及/或凝膠過濾(即,尺寸排阻層析),特別是藉由層析法,更具體而言藉由離子交換層析或疏水交互作用層析或配體交換層析,自含有還原端具有GlcNAc單元的雙醣或寡醣的混合物去除蛋白質、鹽類、副產物、色素、內毒素和其他相關雜質。除了尺寸排阻層析,蛋白質和相關雜質藉由層析介質或選定的膜保留,而還原端具有GlcNAc單元的雙醣或寡醣保留在含有還原端具有GlcNAc單元的雙醣或寡醣的混合物。Disaccharides or oligosaccharides having GlcNAc units at the reducing end can be isolated from the aqueous medium in which the cells are grown in a conventional manner. In the event that the disaccharide or oligosaccharide having GlcNAc units at the reducing end is still present in the cells producing the disaccharide or oligosaccharide having GlcNAc units at the reducing end, then conventional methods can be used to release or extract the di- or oligosaccharide having GlcNAc units at the reducing end Saccharide or oligosaccharide to extracellular, such as using high pH, heat shock, sonication, French crush, homogenization, enzymatic hydrolysis, chemical hydrolysis, solvent hydrolysis, detergent, hydrolysis, etc. to destroy cells. The culture medium and/or cell extracts can then be further used together and individually to isolate disaccharides or oligosaccharides having GlcNAc units at the reducing end. This preferably involves clarification of mixtures containing disaccharides or oligosaccharides with GlcNAc units at the reducing end to remove suspended particles and contaminants, especially cells, cellular components, insoluble metabolites and debris generated by culturing genetically modified cells. In this step, mixtures containing disaccharides or oligosaccharides with GlcNAc units at the reducing end can be clarified in a conventional manner. Preferably, the mixture containing disaccharides or oligosaccharides with GlcNAc units at the reducing end is clarified by centrifugation, coagulation, decantation and/or filtration. The further step of separating the disaccharide or oligosaccharide having GlcNAc units at the reducing end from the mixture comprising the disaccharide or oligosaccharide having GlcNAc units at the reducing end preferably comprises separating the mixture of disaccharides or oligosaccharides having GlcNAc units at the reducing end, Preferably after clarification, substantially all proteins are removed, as well as peptides, amino acids, RNA and DNA and any endotoxins and glycolipids that may interfere with subsequent separation steps. In this step, proteins and related impurities can be removed from a mixture containing disaccharides or oligosaccharides with GlcNAc units at the reducing end in a conventional manner. Preferably, by ultrafiltration, nanofiltration, two-phase partition, reverse osmosis, microfiltration, activated carbon or carbon treatment, nonionic surfactant treatment, enzymatic digestion, tangential flow high performance filtration, Tangential flow ultrafiltration, electrophoresis (eg, using slab-polyacrylamide or sodium dodecyl sulfate-polyacrylamide gel electrophoresis (PAGE)), affinity chromatography (using affinity ligands including, eg, DEAE -Sepharose, poly-L-lysine and polymyxin-B (polymyxin-B, endotoxin-selective adsorbent matrix), ion exchange chromatography (such as, but not limited to, cation exchange, anion exchange, mixed bed ion exchange, inside-out ligand attachment), hydrophobic interaction chromatography and/or gel filtration (ie, size exclusion chromatography), especially by chromatography, more specifically Removal of proteins, salts, by-products, pigments, endotoxins and others from mixtures containing disaccharides or oligosaccharides with GlcNAc units at the reducing end by ion exchange chromatography or hydrophobic interaction chromatography or ligand exchange chromatography related impurities. In addition to size exclusion chromatography, proteins and related impurities are retained by the chromatography medium or membrane of choice, while disaccharides or oligosaccharides with GlcNAc units at the reducing end are retained in mixtures containing disaccharides or oligosaccharides with GlcNAc units at the reducing end .
在進一步較佳實施例中,如本文所述的方法亦提供進一步純化還原端具有GlcNAc單元的雙醣或寡醣。該還原端具有GlcNAc單元的雙醣或寡醣的進一步純化可藉由例如使用(活性)炭或碳、奈米過濾、超微過濾、電泳、酶處理或離子交換以除去任何殘留的DNA、蛋白質、LPS、內毒素或其他雜質而完成。亦可以使用醇類,例如乙醇、和含水的醇類混合物。另一純化步驟是藉由產物的結晶、蒸發或沉澱而完成。另一純化步驟是藉由例如噴霧乾燥、凍乾、噴霧冷凍乾燥、冷凍噴霧乾燥、帶式乾燥(band dry)、傳送帶乾燥(belt dry)、真空帶式乾燥(vacuum band dry)、真空帶式乾燥(vacuum belt dry)、轉筒乾燥、滾筒乾燥、真空轉筒乾燥或真空滾筒乾燥進行乾燥所產生的在還原端帶有GlcNAc的雙醣或寡醣。In a further preferred embodiment, the methods as described herein also provide for further purification of disaccharides or oligosaccharides having a GlcNAc unit at the reducing end. Further purification of the disaccharide or oligosaccharide having a GlcNAc unit at the reducing end can be accomplished by, for example, the use of (activated) charcoal or carbon, nanofiltration, ultrafiltration, electrophoresis, enzymatic treatment or ion exchange to remove any residual DNA, protein , LPS, endotoxin or other impurities. Alcohols such as ethanol, and aqueous alcohol mixtures can also be used. Another purification step is accomplished by crystallization, evaporation or precipitation of the product. Another purification step is by, for example, spray drying, freeze drying, spray freeze drying, freeze spray drying, band dry, belt dry, vacuum band dry, vacuum band dry Disaccharides or oligosaccharides with GlcNAc at the reducing end produced by drying (vacuum belt dry), drum drying, drum drying, vacuum drum drying or vacuum drum drying.
在例示性實施例中,所產生的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的分離及純化是在製程中進行,其包括以任何順序的以下步驟: a) 將培養物或其澄清形式與截留分子量(molecular weight cut-off,MWCO)為600-3500 Da的奈米過濾膜接觸,以確保保留產生的雙醣或寡醣並允許至少部分蛋白質、鹽類、副產物、色素和其他相關雜質通過, b) 使用該膜以無機電解質的水溶液對來自步驟a)的滲餘物進行透析(Diafiltration)製程,然後可選地用純水透析以去除過量的電解質, c) 並從該電解質的陽離子中以鹽類形式收集富含還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的截留物, d) 較佳地,乾燥滲餘物。 In an exemplary embodiment, isolation and purification of the resulting disaccharide or oligosaccharide having N-acetylglucosamine units at the reducing end is performed in a process comprising the following steps in any order: a) Contact the culture or its clarified form with a nanofiltration membrane with a molecular weight cut-off (MWCO) of 600-3500 Da to ensure retention of the produced disaccharides or oligosaccharides and allow at least some of the proteins, salts species, by-products, pigments and other related impurities pass through, b) using the membrane to perform a Diafiltration process on the retentate from step a) with an aqueous solution of inorganic electrolyte, then optionally with pure water to remove excess electrolyte, c) and collecting a retentate rich in disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end as salts from the cations of this electrolyte, d) Preferably, the retentate is dried.
在替代的例示性實施例中,所產生的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的分離及純化是在製程中進行,其包括以任何順序的以下步驟:使用不同的膜對培養物或其澄清形式進行兩個膜過濾的步驟,其中一個膜的截留分子量為約300至約500道爾頓之間,且另一個膜的截留分子量為約600到約800道爾頓之間。In an alternative exemplary embodiment, the isolation and purification of the resulting disaccharides or oligosaccharides with N-acetylglucosamine units at the reducing end is performed in a process comprising the following steps in any order: using different Membrane two steps of membrane filtration of the culture or its clarified form, wherein one membrane has a molecular weight cut-off between about 300 and about 500 Daltons and the other membrane has a molecular weight cut-off between about 600 and about 800 Daltons between.
在替代的例示性實施例中,所產生的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的分離和純化是在製程中進行,其包括以任何順序的以下步驟:包括以H+形式的強陽離子交換樹脂和游離鹼形式的弱陰離子交換樹脂處理培養物或其澄清形式的步驟。In an alternative exemplary embodiment, isolation and purification of the resulting disaccharide or oligosaccharide having N-acetylglucosamine units at the reducing end is performed in a process comprising the following steps in any order: A step of treating the culture or its clarified form with a strong cation exchange resin in the form and a weak anion exchange resin in the free base form.
在替代的例示性實施例中,所產生的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的分離和純化是以下列方式進行。包含所產生的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣、生質、介質成分及污染物的培養物適用於以下分離及純化步驟: i) 自培養物分離生質, ii) 用於去除帶正電材料的陽離子交換劑處理, iii) 用於去除帶負電材料的陰離子交換劑處理, iv) 奈米過濾步驟及/或電透析步驟, 其中提供純度大於或等於80%的包括所產生的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之純化溶液。可選地,藉由選自包含噴霧乾燥、凍乾、噴霧冷凍乾燥、冷凍噴霧乾燥、帶式乾燥、傳送帶乾燥、真空帶式乾燥、真空帶式乾燥、轉筒乾燥、滾筒乾燥、真空轉筒乾燥及真空滾筒乾燥的列舉的任一或多種乾燥步驟進行乾燥純化溶液。 In an alternative exemplary embodiment, the isolation and purification of the resulting disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end is performed in the following manner. Cultures comprising the resulting disaccharides or oligosaccharides with N-acetylglucosamine units at the reducing end, biomass, media components and contaminants are suitable for the following isolation and purification steps: i) isolating biomass from the culture, ii) cation exchanger treatment for removal of positively charged materials, iii) Anion exchanger treatment for removal of negatively charged materials, iv) a nanofiltration step and/or an electrodialysis step, Therein is provided a purified solution comprising the produced disaccharide or oligosaccharide having a N-acetylglucosamine unit at the reducing end with a purity of greater than or equal to 80%. Optionally, by being selected from the group consisting of spray drying, freeze drying, spray freeze drying, freeze spray drying, belt drying, conveyor belt drying, vacuum belt drying, vacuum belt drying, drum drying, drum drying, vacuum drum drying Any one or more of the recited drying steps of drying and vacuum drum drying are used to dry the purified solution.
在替代的例示性實施例中,所產生的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣的分離及純化是在製程中進行,其包括以任何順序的以下步驟:培養物的酶處理;從培養物中去除生質;超微過濾;奈米過濾;及柱層析步驟。較佳地,如此的柱層析是單柱或多柱。更佳地,柱層析步驟是模擬移動床層析(simulated moving bed chromatography)。如此的模擬移動床層析較佳包括i)至少4個柱,其中至少一個柱包含弱或強陽離子交換樹脂;及/或ii)具有不同流速的四個區I、II、III和IV;及/或iii)包含水的溶析液;及/或iv)15至60攝氏度的工作溫度。較佳地,該製程進一步包括選自包括噴霧乾燥、凍乾、噴霧冷凍乾燥、冷凍噴霧乾燥、帶式乾燥、傳送帶乾燥、真空帶式乾燥、真空帶式乾燥、轉筒乾燥、滾筒乾燥、真空轉筒乾燥及真空滾筒乾燥之列舉的步驟。In an alternative exemplary embodiment, isolation and purification of the resulting disaccharide or oligosaccharide having N-acetylglucosamine units at the reducing end is performed in a process that includes the following steps in any order: Enzymatic treatment; biomass removal from culture; ultrafiltration; nanofiltration; and column chromatography steps. Preferably, such column chromatography is a single column or multiple columns. More preferably, the column chromatography step is simulated moving bed chromatography. Such simulated moving bed chromatography preferably comprises i) at least 4 columns, at least one of which comprises a weak or strong cation exchange resin; and/or ii) four zones I, II, III and IV with different flow rates; and /or iii) an eluate comprising water; and/or iv) an operating temperature of 15 to 60 degrees Celsius. Preferably, the process further comprises a method selected from the group consisting of spray drying, freeze drying, spray freeze drying, freeze spray drying, belt drying, conveyor belt drying, vacuum belt drying, vacuum belt drying, drum drying, drum drying, vacuum drying Listed steps for tumble drying and vacuum tumble drying.
在特定實施例中,本發明提供藉由選自包含噴霧乾燥、凍乾、噴霧冷凍乾燥、冷凍噴霧乾燥、帶式乾燥、傳送帶乾燥、真空帶式乾燥、真空帶式乾燥、轉筒乾燥、滾筒乾燥、真空轉筒乾燥及真空滾筒乾燥的列舉的任一或多種乾燥步驟所乾燥成粉末的所產生的在還原端帶有GlcNAc的雙醣或寡醣,其中乾燥粉末含有<15%-wt的水,較佳為<10%-wt的水,更佳為<7%-wt的水,最佳為<5%-wt的水。In particular embodiments, the present invention provides drying by a method selected from the group consisting of spray drying, freeze drying, spray freeze drying, freeze spray drying, belt drying, conveyor belt drying, vacuum belt drying, vacuum belt drying, tumble drying, drum drying The resulting disaccharide or oligosaccharide bearing GlcNAc at the reducing end, dried to powder by any one or more of the enumerated drying steps of drying, vacuum drum drying and vacuum drum drying, wherein the dry powder contains <15%-wt Water, preferably <10%-wt water, more preferably <7%-wt water, most preferably <5%-wt water.
在第三態樣中,本發明提供如本文所述的代謝工程細胞用於產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之用途,較佳為用於產生LNB或LacNAc,更佳為用於產生在還原端含有LNB或LacNAc的寡醣,又更佳為用於產生唾液酸化及/或岩藻糖基化及/或半乳糖基化及/或GlcNAc-修飾形式的LNB或LacNAc,或最佳為用於產生唾液酸化及/或岩藻糖基化及/或半乳糖基化及/或 GlcNAc修飾形式的在還原端含有LNB或LacNAc的寡醣。In a third aspect, the present invention provides the use of metabolically engineered cells as described herein for producing disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end, preferably for producing LNB or LacNAc, More preferably for the production of oligosaccharides containing LNB or LacNAc at the reducing end, yet more preferably for the production of sialylated and/or fucosylated and/or galactosylated and/or GlcNAc-modified forms of LNB Or LacNAc, or preferably an oligosaccharide containing LNB or LacNAc at the reducing end for the generation of sialylated and/or fucosylated and/or galactosylated and/or GlcNAc modified forms.
在第三態樣的另一較佳實施例中,如本文所述的代謝工程細胞用於產生在還原端具有N-乙醯葡萄糖胺單元的中性雙醣或寡醣,更佳為在還原端含有LNB或LacNAc的中性寡醣。In another preferred embodiment of the third aspect, metabolically engineered cells as described herein are used to produce neutral disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end, more preferably at reducing Neutral oligosaccharides containing LNB or LacNAc at the ends.
在第三態樣的另一較佳實施例中,如本文所述的代謝工程細胞用於產生如本文所述的還原端具有N-乙醯葡萄糖胺(GlcNAc)單元之雙醣及/或寡醣混合物。In another preferred embodiment of the third aspect, the metabolically engineered cells as described herein are used to produce disaccharides and/or oligosaccharides having N-acetylglucosamine (GlcNAc) units at the reducing end as described herein sugar mixture.
在第三態樣的另一較佳實施例中,如本文所述的代謝工程細胞用於產生混合物,該混合物包括(i)在還原端具有N-乙醯葡萄糖胺(GlcNAc)單元的雙醣或寡醣(或如本文所述的混合物)及(ii)一或多種基於乳糖的哺乳動物乳寡醣,較佳為如本文所述的一或多種基於乳糖的人乳寡醣。In another preferred embodiment of the third aspect, metabolically engineered cells as described herein are used to generate a mixture comprising (i) a disaccharide having N-acetylglucosamine (GlcNAc) units at the reducing end or oligosaccharides (or mixtures as described herein) and (ii) one or more lactose-based mammalian milk oligosaccharides, preferably one or more lactose-based human milk oligosaccharides as described herein.
為了識別如本文所述的細胞中產生的還原端具有GlcNAc單元的雙醣或寡醣、單體建構區塊(例如,單醣或聚醣單元組成)、側鏈的變旋異構構型(anomeric configuration)、取代基的存在及位置、聚合度/分子量和連接模式的程度可藉由本領域已知的標準方法進行識別,例如甲基化分析、還原裂解、水解、GC-MS(氣相層析-質譜測定)、MALDI-MS(間質輔助雷測脫附/電離-質譜測定)、ESI-MS(電噴霧電離-質譜測定)、HPLC(帶紫外光或折射率檢測的高效能液相層析)、HPAEC-PAD(帶脈衝電流檢測的高效能陰離子交換層析)、CE(毛細管電泳)、IR(紅外光)/拉曼光譜和NMR(核磁共振)光譜技術。晶體結構可使用例如固態NMR、FT-IR(傅立葉變換紅外光譜)和WAXS(廣角X射線散射)進行解析。聚合度(DP)、DP分佈和多分散性可以藉由例如黏度測定法和SEC(SEC-HPLC,高效能尺寸排阻層析法)進行確定。為了識別醣類方法的單體成分,例如可使用酸-催化水解、HPLC(高效能液相層析)或GLC(氣液層析)(轉化為醛醣醇乙酸鹽後)。為了確定醣苷鍵結,在DMSO中用碘甲烷和強鹼將醣進行甲基化,執行水解,完成還原為部分甲基化的醛醣醇,執行乙醯化為甲基化的醛醣醇乙酸鹽,並藉由GLC/MS(氣液層析與質譜測定聯用)進行分析。為了確定寡糖序列,使用酸或酶進行部分解聚合以確定結構。為了識別變旋異構構型,對寡糖進行酶促分析,例如將其與對於特定類型的鍵(例如,β-半乳糖苷酶或α-葡萄糖苷酶等)具有特異性的酶接觸,並可使用NMR進行產物分析。To identify disaccharides or oligosaccharides with GlcNAc units at the reducing end, monomeric building blocks (eg, monosaccharide or glycan unit composition), mutated configurations of side chains ( anomeric configuration), presence and position of substituents, degree of polymerization/molecular weight and degree of linkage mode can be identified by standard methods known in the art, such as methylation analysis, reductive cleavage, hydrolysis, GC-MS (gas phase chromatogram) Analysis-Mass Spectrometry), MALDI-MS (Interstitial-Assisted Lightning Desorption/Ionization-Mass Spectrometry), ESI-MS (Electrospray Ionization-Mass Spectrometry), HPLC (High Performance Liquid Phase with UV or Refractive Index Detection) chromatography), HPAEC-PAD (high performance anion exchange chromatography with pulsed current detection), CE (capillary electrophoresis), IR (infrared light)/Raman spectroscopy and NMR (nuclear magnetic resonance) spectroscopy techniques. The crystal structure can be resolved using, for example, solid state NMR, FT-IR (Fourier transform infrared spectroscopy) and WAXS (wide angle X-ray scattering). The degree of polymerization (DP), DP distribution and polydispersity can be determined, for example, by viscometry and SEC (SEC-HPLC, high performance size exclusion chromatography). To identify the monomeric constituents of the saccharide method, for example, acid-catalyzed hydrolysis, HPLC (High Performance Liquid Chromatography) or GLC (Gas Liquid Chromatography) (after conversion to alditol acetate) can be used. To determine glycosidic linkages, methylate the sugar with iodomethane and a strong base in DMSO, perform hydrolysis, complete reduction to partially methylated alditol, perform acetylation to methylated alditol acetate salts and analyzed by GLC/MS (gas-liquid chromatography coupled with mass spectrometry). To determine the oligosaccharide sequence, partial depolymerization is performed using acids or enzymes to determine the structure. To identify the mutator configuration, the oligosaccharide is subjected to enzymatic analysis, for example, by contacting it with an enzyme specific for a particular type of bond (eg, β-galactosidase or α-glucosidase, etc.), Product analysis can be performed using NMR.
包括還原端具有including the reducing end with N-N- 乙醯葡萄糖胺單元的雙醣或寡醣的產物Products of disaccharides or oligosaccharides of acetylglucosamine units
在部分實施例中,將如本文所述產生的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣(或如本文所述的混合物)摻入食物(例如人類食物或飼料)、膳食補充劑、藥物成分、化妝品成分或藥物中。在部分實施例中,還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣與一或多種適用於食品、飼料、膳食補充劑、藥物成分、化妝品成分或藥物的成分混合。In some embodiments, a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end (or a mixture as described herein) produced as described herein is incorporated into food (eg, human food or feed), diet In supplements, pharmaceutical ingredients, cosmetic ingredients or pharmaceuticals. In some embodiments, the disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end is mixed with one or more ingredients suitable for use in food, feed, dietary supplements, pharmaceutical ingredients, cosmetic ingredients, or pharmaceuticals.
在部分實施例中,膳食補充劑包括至少一種益生質成分及/或至少一種益生菌成分。In some embodiments, the dietary supplement includes at least one prebiotic ingredient and/or at least one probiotic ingredient.
「益生質(prebiotic)」是促進有益於宿主的微生物的,特別是胃腸道中微生物生長的物質。在部分實施例中,膳食補充劑提供多種益生質,其包括節由本說明書中揭露的製程產生及/或純化的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣,以促進一種或多種有益微生物的生長。用於膳食補充劑的益生質成分的例子包括其他益生質分子(如HMO)和植物多醣(例如,菊糖、果膠、b-葡聚糖和木質寡醣)。「益生菌(probiotic)」產物通常含有活的微生物,其替代或添加至胃腸道微生物群中,而有益於受體。此類微生物的實例包括乳酸桿菌種(例如,嗜酸乳桿菌( L. acidophilus)和保加利亞乳桿菌( L. bulgaricus))、雙叉乳桿菌種(例如,動物雙叉乳桿菌( B. animalis)、長雙叉乳桿菌( B. longum)和嬰兒雙叉乳桿菌( B. infantis)(例如Bi-26))和布拉氏酵母菌。在部分實施例中,通過本說明書的製程產生及/或純化的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣與此類微生物組合口服施予。 A "prebiotic" is a substance that promotes the growth of microorganisms that are beneficial to the host, especially in the gastrointestinal tract. In some embodiments, dietary supplements provide a variety of prebiotics, including disaccharides or oligosaccharides with N-acetylglucosamine units at the reducing end produced and/or purified by the processes disclosed in this specification, to promote one or Growth of a variety of beneficial microorganisms. Examples of prebiotic ingredients used in dietary supplements include other prebiotic molecules (eg, HMOs) and plant polysaccharides (eg, inulin, pectin, b-glucans, and xylo-oligosaccharides). "Probiotic" products typically contain live microorganisms that replace or add to the gastrointestinal microbiota to benefit the recipient. Examples of such microorganisms include Lactobacillus species (eg, L. acidophilus and L. bulgaricus ), Lactobacillus species (eg, B. animalis ) , B. longum and B. infantis (e.g. Bi-26)) and Saccharomyces boulardii. In some embodiments, disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end produced and/or purified by the processes of the present specification are administered orally in combination with such microorganisms.
膳食補充劑的其他成分的實例包括雙醣(例如,乳糖)、單醣(例如,葡萄糖和半乳糖)、增稠劑(例如,阿拉伯樹膠)、酸度調節劑(例如,檸檬酸三鈉)、水、脫脂牛奶和調味劑。Examples of other ingredients of dietary supplements include disaccharides (eg, lactose), monosaccharides (eg, glucose and galactose), thickeners (eg, acacia), acidity regulators (eg, trisodium citrate), Water, skim milk and flavouring.
在部分實施例中,還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣(或如本文所述的混合物)摻入人類嬰兒食品(例如,嬰兒配方)中。嬰兒配方通常是用於餵養嬰兒的人造食品,作為人類母乳的完全或部分替代品。在部分實施例中,嬰兒配方作為粉末出售並藉由與水混合製備於嬰兒餵養用的奶瓶或杯子。嬰兒配方的成分通常設計為大致模仿人類母乳。在部分實施例中,藉由本說明書中的方法產生及/或純化的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣(或如本文所述的混合物)被包括在嬰兒配方中以提供營養益處,其類似於由人類母乳中的寡醣提供所提供的益處。在部分實施例中,還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣與嬰兒配方的一或多種成分混合。嬰兒配方成分的例子包括脫脂奶、碳水化合物來源(例如,乳糖)、蛋白質來源(例如,乳清蛋白濃縮物和酪蛋白)、脂肪來源(例如,植物油-例如棕櫚、高油酸紅花油、菜籽油、椰子油及/或葵花籽油;和魚油)、維生素(例如,維生素A、Bb、Bi2、C和D)、礦物質(例如,檸檬酸鉀、檸檬酸鈣、氯化鎂、氯化鈉、檸檬酸鈉和磷酸鈣)及可能的人乳寡糖(HMO)。此類HMO可包括例如DiFL、乳-N-三糖II、LNT、LNnT、乳-N-岩藻五糖I、乳-N-新岩藻五糖、乳-N-岩藻五糖II、乳-N-岩藻五糖III、乳-N-岩藻五糖V、乳-N-新岩藻五糖V、乳-N-二岩藻六糖I、乳-N-二岩藻六糖II、6'-半乳糖基乳糖、3'-半乳糖基乳糖、乳-N-六糖和乳-N-新六糖。In some embodiments, a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end (or a mixture as described herein) is incorporated into human infant food (eg, infant formula). Infant formula is usually an artificial food used to feed infants as a complete or partial replacement for human breast milk. In some embodiments, the infant formula is sold as a powder and prepared in an infant feeding bottle or cup by mixing with water. The ingredients of infant formula are often designed to roughly mimic human breast milk. In some embodiments, disaccharides or oligosaccharides (or mixtures as described herein) having N-acetylglucosamine units at the reducing end produced and/or purified by the methods of this specification are included in infant formula to Provides nutritional benefits similar to those provided by oligosaccharides in human breast milk. In some embodiments, a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end is mixed with one or more ingredients of the infant formula. Examples of infant formula ingredients include skim milk, carbohydrate sources (eg, lactose), protein sources (eg, whey protein concentrate and casein), fat sources (eg, vegetable oils - eg, palm, high oleic safflower oil, vegetable oil) seed oil, coconut oil, and/or sunflower oil; and fish oil), vitamins (eg, vitamins A, Bb, Bi2, C, and D), minerals (eg, potassium citrate, calcium citrate, magnesium chloride, sodium chloride , sodium citrate and calcium phosphate) and possibly human milk oligosaccharides (HMO). Such HMOs may include, for example, DiFL, lacto-N-trisaccharide II, LNT, LNnT, lacto-N-fucopentaose I, lacto-N-neofucopentose, lacto-N-fucopentaose II, Lacto-N-fucopentaose III, Lacto-N-fucopentaose V, Lacto-N-neofucopentose V, Lacto-N-difucohexaose I, Lacto-N-difucohexaose Sugar II, 6'-galactosylose, 3'-galactosyllose, lacto-N-hexaose and lacto-N-neohexaose.
在部分實施例中,一或多種嬰兒配方成分包括脫脂奶、碳水化合物來源、蛋白質來源、脂肪來源及/或維生素和礦物質。In some embodiments, the one or more infant formula ingredients include skim milk, carbohydrate sources, protein sources, fat sources, and/or vitamins and minerals.
在部分實施例中,一或多種嬰兒配方成分包括乳糖、乳清蛋白濃縮物及/或高油酸紅花油。In some embodiments, the one or more infant formula ingredients include lactose, whey protein concentrate, and/or high oleic safflower oil.
在部分實施例中,嬰兒配方中的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣(或如本文所述的混合物)的濃度與人類母乳中通常存在的寡醣濃度大致相同。在部分實施例中,嬰兒配方中的雙醣或寡醣濃度大約與人類母乳中通常存在的寡醣的濃度相同。In some embodiments, the concentration of disaccharides or oligosaccharides (or mixtures as described herein) having N-acetylglucosamine units at the reducing end in the infant formula is about the same as the concentration of oligosaccharides typically present in human breast milk. In some embodiments, the disaccharide or oligosaccharide concentration in the infant formula is about the same as the concentration of oligosaccharides typically present in human breast milk.
在部分實施例中,還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣(或如本文所述的混合物)被摻入飼料製劑中,其中該飼料選自包括寵物食品、動物代乳品、獸醫產品、斷奶後的飼料,或教槽飼料的列舉。In some embodiments, a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end (or a mixture as described herein) is incorporated into a feed formulation, wherein the feed is selected from the group consisting of pet food, animal milk replacer , veterinary product, post-weaning feed, or an enumeration of trough feed.
在部分實施例中,食物、飼料、膳食補充劑、藥物成分及/或藥物包含至少一種免疫調節成分。In some embodiments, the food, feed, dietary supplement, pharmaceutical ingredient, and/or drug comprises at least one immunomodulatory ingredient.
「免疫調節(immunomodulatory)」是改變免疫反應或免疫系統功能的物質。「免疫調節」成分可藉由增加(免疫刺激)或減少(免疫抑制劑)血清抗體的產生而改變免疫反應。免疫刺激劑用於增強例如針對傳染病、腫瘤、原發性或繼發性免疫缺陷以及抗體轉移改變的免疫反應。免疫抑製成分用於降低對移植器官的免疫反應,並治療自身免疫性疾病,如天疱瘡(pemphigus)、狼瘡或過敏症。在部分實施例中,免疫調節成分具有抗炎活性。在部分實施例中,食物、飼料、膳食補充劑、藥物成分及/或藥物提供多種免疫調節劑,其包括藉由本說明書中揭露的製程產生及/或純化的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣(或如本文所述的混合物),以使免疫系統適應正常功能。在可區分的生命階段,免疫力差異很大。不同的食物成分會影響特定的免疫反應,其依據偏向的代謝過程、以及消費者和患者的特徵。添加有免疫調節成分的食品亦稱為功能性食品。功能性食品是對特定消費者群體具有特定健康益處的食品。存在於功能性食品以及飼料和膳食補充劑中的免疫調節成分的例子包括其他免疫調節分子,例如作為本說明書指定的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣和脂肪酸(PUFA)、魚油、胺基酸(例如,精胺酸和麩醯胺)、凝集素(例如,選滯蛋白)、維生素(例如,維生素A、B6、C、E、硫胺素、葉酸)和礦物質(例如,鋅)。這種在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣可以包括LNB、LacNAc、聚-LacNAc和路易斯X、路易斯Y和唾液酸路易斯X抗原決定位。此外,存在於藥物成分和藥物中的免疫調節成分的例子包括其他免疫調節分子,例如例如作為本說明書指定的還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣以及介白素、脂多醣、葡聚糖、干擾素γ和特異性抗體。存在於藥物混合物及/或藥物中這種在還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣可包括LNB、LacNAc、聚-LacNAc和路易斯X、路易斯Y和唾液酸路易斯X抗原決定位。"Immunomodulatory" is a substance that alters the immune response or the function of the immune system. "Immunomodulatory" components alter the immune response by increasing (immunostimulatory) or decreasing (immunosuppressive) serum antibody production. Immunostimulants are used to enhance, for example, immune responses against infectious diseases, tumors, primary or secondary immune deficiencies, and altered antibody transfer. Immunosuppressive components are used to reduce the immune response to transplanted organs and to treat autoimmune diseases such as pemphigus, lupus or allergies. In some embodiments, the immunomodulatory component has anti-inflammatory activity. In some embodiments, foods, feeds, dietary supplements, pharmaceutical ingredients and/or drugs provide various immunomodulatory agents including N-acetylglucosamine at the reducing end produced and/or purified by the processes disclosed in this specification Units of disaccharides or oligosaccharides (or mixtures as described herein) to adapt the immune system to normal function. Immunity varies widely across distinguishable life stages. Different food components influence specific immune responses, depending on biased metabolic processes, as well as consumer and patient characteristics. Foods with added immunomodulatory ingredients are also called functional foods. Functional foods are foods that have specific health benefits for specific consumer groups. Examples of immunomodulatory ingredients present in functional foods as well as in feed and dietary supplements include other immunomodulatory molecules such as disaccharides or oligosaccharides and fatty acids (PUFAs) having an N-acetylglucosamine unit at the reducing end as specified in this specification. ), fish oil, amino acids (eg, arginine and glutamine), lectins (eg, sequestrin), vitamins (eg, vitamins A, B6, C, E, thiamine, folic acid), and minerals Substances (eg, zinc). Such disaccharides or oligosaccharides with N-acetylglucosamine units at the reducing end may include LNB, LacNAc, poly-LacNAc and Lewis X, Lewis Y and sialic acid Lewis X epitopes. In addition, examples of immunomodulatory components present in pharmaceutical ingredients and drugs include other immunomodulatory molecules such as, for example, disaccharides or oligosaccharides having N-acetylglucosamine units at the reducing end as specified in this specification, as well as interleukins, lipids Polysaccharides, dextran, interferon gamma and specific antibodies. Such disaccharides or oligosaccharides with N-acetylglucosamine units at the reducing end present in drug mixtures and/or drugs may include LNB, LacNAc, poly-LacNAc and Lewis X, Lewis Y and sialic acid Lewis X epitopes bit.
在本發明的一態樣的上下文中揭露的各實施例,亦在本發明的所有其他態樣的上下文中揭露,除非另有明確說明。Embodiments disclosed in the context of one aspect of the invention are also disclosed in the context of all other aspects of the invention, unless expressly stated otherwise.
除非另有定義,否則本文中使用的所有技術和科學用語通常具有與本發明所屬技術領域中具通常知識者通常理解的相同含義。一般而言,本文中使用的用語以及上下文描述的細胞培養、分子遺傳學、有機化學和核酸化學以及雜交中的實驗室程序是所屬技術領域中習知和常用。核酸和肽的合成使用標準技術。一般而言,純化步驟根據製造商的說明書執行。Unless otherwise defined, all technical and scientific terms used herein generally have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. In general, the phraseology used herein and the contextual descriptions of laboratory procedures in cell culture, molecular genetics, organic and nucleic acid chemistry, and hybridization are those well known and commonly used in the art. Nucleic acids and peptides are synthesized using standard techniques. In general, purification steps are performed according to the manufacturer's instructions.
其他優點來自具體實施例、實例及附圖。不言而喻,在不脫離本發明的範圍的情況下,上述特徵和下面仍要說明的特徵不僅可以在各自指定的組合中使用,亦可以在其他組合中使用或單獨使用。Other advantages come from the specific embodiments, examples and figures. It goes without saying that the above-mentioned features and the features yet to be explained below can be used not only in the respectively specified combination, but also in other combinations or alone, without departing from the scope of the present invention.
本發明關於下列較佳實施例: 1. 一種藉由細胞產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之方法,該方法包括以下步驟: a. 提供細胞,該細胞能夠(i)合成核苷酸-糖、(ii)合成N-乙醯葡萄糖胺、以及(iii)醣化該N-乙醯葡萄糖胺單醣, b. 在允許產生該雙醣或寡醣的條件下培養該細胞, c. 自該培養物分離所欲的雙醣或寡醣。 2. 根據實施例1之方法,其中該細胞表現至少一種N-乙醯葡萄糖胺-6-磷酸轉移酶及磷酸酶以合成單醣N-乙醯葡萄糖胺。 3. 根據實施例1及2中任一項之方法,其中該細胞表現至少一種醣基轉移酶,以醣化N-乙醯葡萄糖胺。 4. 根據實施例1至3中任一項之方法,其中該細胞被基因改造以產生該雙醣或寡醣。 5. 根據實施例1至4中任一項之方法,其中該細胞是在選自包含下列之群組中的酶的表現或活性上被修飾:N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶、醣基轉移酶、L-麩醯胺—D-果糖-6-磷酸轉胺酶及UDP-葡萄糖4-表異構酶。 6. 根據實施例1至5中任一項之方法,其中該核苷酸-糖選自包含下列之群組:UDP-半乳糖(UDP-Gal)、UDP-N-乙醯葡萄糖胺(UDP-GlcNAc)、UDP-N-乙醯半乳糖胺(UDP-GalNAc)、UDP-N-乙醯甘露糖胺(UDP-ManNAc)、GDP-岩藻糖(GDP-Fuc)、GDP-甘露糖(GDP-Man)、UDP-葡萄糖(UDP-Glc)、CMP-N-乙醯基神經胺酸(CMP-Neu5Ac)、CMP-N-乙醇醯神經胺酸(CMP-Neu5Gc)、UDP-葡萄糖醛酸鹽、UDP-半乳糖醛酸鹽、GDP-鼠李糖以及UDP-木糖。 7. 根據實施例1至6中任一項之方法,其中該核苷酸-糖為UDP-半乳糖,且該醣基轉移酶為N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶或N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶。 8. 根據實施例1至7中任一項之方法,其中該雙醣為乳-N-雙糖(Gal-b1,3-GlcNAc)或N-乙醯乳糖胺(Gal-b1,4-GlcNAc),或該寡醣在該還原端具有乳-N-雙糖(Gal-b1,3-GlcNAc)或N-乙醯乳糖胺(Gal-b1,4-GlcNAc)。 9. 根據實施例1至8中任一項之方法,其中該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶為醣基轉移酶,其具有: a. PFAM域PF00535,且 i) 包括SEQ ID NO 01的序列[AGPS]XXLN(X n)RXDXD,其中X是任何胺基酸,其中n為12至17,或 ii) 包括SEQ ID NO 02的序列PXXLN(X n)RXDXD(X m)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是12至17且m是100至115,或 iii) 包括根據SEQ ID NO:03、04、05、06、07或08中的任一的多肽序列,或 iv) 為SEQ ID NO:03、04、05、06、07或08中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:03、04、05、06、07或08中的任一的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 v) 包括來自SEQ ID NO:03、04、05、06、07或08中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或者 b. PFAM域IPR002659,且 i) 包括SEQ ID NO 09的序列KT(X n)[FY]XXKXDXD(X m)[FHY]XXG(X,無A、G、S)(X p)X(無F、H、W、Y)[DE]D[ILV]XX[AG],其中X是任何胺基酸,其中n是13至16,m是35至70,且p是20至45,或 ii) 包括根據SEQ ID NO:10、11、12或13中的任一的多肽序列,或 iii) 為SEQ ID NO:10、11、12或13中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:10、11、12或13的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 iv) 包括來自SEQ ID NO:10、11、12或13中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性。 10. 根據實施例1至8中任一項之方法,其中該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶為醣基轉移酶,其具有: a. PFAM域PF01755,且 i) 包括SEQ ID NO 14的序列EXXCXXSHXX[ILV][FWY](X n)EDD(X m)[ACGST]XXYX[ILMV],其中X是任何胺基酸,其中n為13至15且m是50至76,或 ii) 包括根據SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一的多肽序列,或 iii) 為SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 iv) 包括來自SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 b. PFAM域PF00535,且 i) 包括SEQ ID NO 24的序列R[KN]XXXXXXXGXXXX[FL]XDXD(X n)[FHW]XXX[FHNY](X m)E[DE],其中X是任何胺基酸,其中n是50至75,m是10至30,或 ii) 包括SEQ ID NO 25的序列R[KN]XXXXXXXGXXXXFXDXD(X n)[FHW]XXX[FHNY](X m)E[DE](X p)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是50至75,m是10至30,且p是20至25,或 iii) 包括根據SEQ ID NO:26、27或28中的任一的多肽序列,或 iv) 為SEQ ID NO:26、27或28中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:26、27或28的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v) 包括來自SEQ ID NO:26、27或28中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 c. PFAM域PF02709且不具有PFAM域PF00535,且 i) 包括SEQ ID NO 29的序列[FWY]XX[FY][FWY](X 23)[FWY][GQ]X[DE]D,其中X是任何胺基酸,或 ii) 包括SEQ ID NO 30的序列[PV]W[GHNP](X n)[FWY][GQ]X[DE]D,其中X是任何胺基酸,其中n是21至24,或 iii) 包括根據SEQ ID NO:31、32、33、34、35或36中的任一的多肽序列,或 iv) 為SEQ ID NO:31、32、33、34、35或36中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:31、32、33、34、35或36的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v) 包括來自SEQ ID NO:31、32、33、34、35或36中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 d. PFAM域PF03808,且 i) 包括SEQ ID NO 37的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA,其中X是任何胺基酸,且其中n是20至25,或 ii) 包括SEQ ID NO 38的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA(X m)[HR]XG[FWY](X p)GXGXXXQ[DE],其中X是任何胺基酸,其中n是20至25,m是40至50,且p是22至30,或 iii) 包括根據SEQ ID NO:39、40或41中的任一的多肽序列,或 iv) 為SEQ ID NO:39、40或41中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:39、40或41的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v) 包括來自SEQ ID NO:39、40或41中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性。 11. 根據上述實施例中任一項之方法,其中 a. 該N-乙醯葡萄糖胺-6-磷酸轉移酶為包括UniProt ID P43577的多肽的多肽序列,或為UniProt ID P43577的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P43577的多肽全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺-6-磷酸轉移酶活性,且 b. 該L-麩醯胺—D-果糖-6-磷酸轉胺酶為包括UniProt ID P17169的多肽的多肽序列,或為具有UniProt ID P17169的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P17169的多肽全長的至少80%整體序列同一性,且具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性;或為與UniProt ID P17169多肽不同的A39T、R250C和G472S突變的修飾版本。 12. 根據上述實施例中任一項之方法,其中該細胞可代謝碳源,其選自包含下列列舉之群組:葡萄糖、果糖、半乳糖、乳糖、蔗糖、麥芽糖、麥芽-寡醣、麥芽三糖、山梨醇、木糖、鼠李糖、甘露糖、甲醇、乙醇、阿拉伯糖、海藻糖、澱粉、纖維素、半纖維素、糖蜜、玉米浸液、高果糖漿、甘油、乙酸鹽、檸檬酸鹽、乳酸、丙酮酸。 13. 根據上述實施例中任一項之方法,其中該細胞無法將N-乙醯葡萄糖胺-6-磷酸鹽轉換成葡萄糖胺-6-磷酸鹽,及/或無法將葡萄糖胺-6-磷酸鹽轉換成果糖-6-磷酸鹽。 14. 根據上述實施例中任一項之方法,其中該細胞經修飾以產生GDP-岩藻糖。 15. 根據上述實施例中任一項之方法,其中該細胞經修飾以促進GDP-岩藻糖產生,其中該修飾選擇自包含下列列舉之群組:UDP-葡萄糖:十一異戊二烯-磷酸葡萄糖-1-磷酸轉移酶編碼基因的剃除、GDP-L-岩藻糖合成酶編碼基因的過度表現、GDP-甘露糖4,6-脫水酶編碼基因的過度表現、甘露糖-1-磷酸鹽鳥苷酸轉移酶編碼基因的過度表現、磷酸甘露糖變位酶編碼基因的過度表現、或甘露糖-6-磷酸鹽異構酶編碼基因的過度表現。 16. 根據上述實施例中任一項之方法,其中該細胞經修飾以產生UDP-半乳糖。 17. 根據上述實施例中任一項之方法,其中該細胞經修飾以促進UDP-半乳糖產生,其中該修飾選擇自包含下列列舉之群組:5’-核苷酸酶/UDP-糖水解酶編碼基因的剃除或半乳糖-1-磷酸鹽尿苷醯轉移酶編碼基因的剃除。 18. 根據上述實施例中任一項之方法,其中該細胞經修飾以產生CMP-N-乙醯基神經胺酸。 19. 根據上述實施例中任一項之方法,其中該細胞經修飾以促進CMP-N-乙醯基神經胺酸產生,其中該修飾選擇自包含下列列舉之群組:CMP-唾液酸合成酶編碼基因的過度表現、唾液酸合成酶編碼基因的過度表現、N-乙醯基-D-葡萄糖胺2-表異構酶編碼基因的過度表現。 20. 根據上述實施例中任一項之方法,其中該細胞能夠表現至少一種其他醣基轉移酶,且其中該其他醣基轉移酶選自包括下列之群組:岩藻糖基轉移酶、唾液酸轉移酶、半乳糖基轉移酶、葡萄糖基轉移酶、甘露醣基轉移酶、N-乙醯基葡糖胺轉移酶、N-乙醯基半乳糖胺轉移酶、N-乙醯基甘露糖胺轉移酶、木醣基轉移酶、葡萄糖醛酸苷轉移酶、半乳醣醛酸轉移酶、葡萄糖胺轉移酶、N-乙醇醯神經胺轉移酶、鼠李糖基轉移酶(rhamnosyltransferases)。 21. 根據實施例20之方法,其中該細胞在該其他醣基轉移酶的表現或活性方面被修飾。 22. 根據上述實施例中任一項之方法,其中該寡醣選自包括下列之列舉:2-岩藻糖基乳-N-雙糖、4-岩藻糖基乳-N-雙糖、2-4-二岩藻糖基乳-N-雙糖、3’-唾液酸乳-N-雙糖、6’-唾液酸乳-N-雙糖、3’,6’-二唾液酸乳-N-雙糖、6,6’-二唾液酸乳-N-雙糖、2’-岩藻糖基-3’-唾液酸乳-N-雙糖、2’-岩藻糖基-6’-唾液酸乳-N-雙糖、4-岩藻糖基-3'-唾液酸乳-N-雙糖、4-岩藻糖基-6’-唾液酸乳-N-雙糖、2-岩藻糖基N-乙醯乳糖胺、3’-岩藻糖基N-乙醯乳糖胺、2,3’-二岩藻糖基N-乙醯乳糖胺、3’-唾液酸N-乙醯乳糖胺、6’-唾液酸N-乙醯乳糖胺、3’,6’-二唾液酸N-乙醯乳糖胺、6,6’-二唾液酸N-乙醯乳糖胺、2’-岩藻糖基-3’-唾液酸N-乙醯乳糖胺、2’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、3-岩藻糖基-3'-唾液酸N-乙醯乳糖胺、3’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、P1三醣(Gal-a1,4-Gal-b1,4-GlcNAc)、異源移植抗原決定位(Gal-a1,3-Gal-b1,4-GlcNAc)、Gal-b14-(Galb13)-GlcNAc、聚-N-乙醯乳糖胺、GalNAc-b1,3-Gal-b1,4-GlcNAc。 23. 一種代謝工程細胞,其能夠(i)合成核苷酸-糖、(ii)合成N-乙醯葡萄糖胺、及(iii)醣化該N-乙醯葡萄糖胺單醣,其中該細胞產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。 24. 根據實施例23之細胞,其中該細胞表現至少一種N-乙醯葡萄糖胺-6-磷酸轉移酶及磷酸酶,以合成N-乙醯葡萄糖胺。 25. 根據實施例23及24中任一項之細胞,其中該細胞表現至少一種醣基轉移酶,以醣化N-乙醯葡萄糖胺。 26. 根據實施例23至25中任一項之細胞,其中該細胞在選自包括下列之群組之酵素的表現或活性方面被修飾:N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶、醣基轉移酶、L-麩醯胺—D-果糖-6-磷酸轉胺酶及UDP-葡萄糖4-表異構酶。 27. 根據實施例23至26中任一項之細胞,其中該核苷酸-糖選自包含下列之群組:UDP-半乳糖(UDP-Gal)、UDP-N-乙醯葡萄糖胺(UDP-GlcNAc)、UDP-N-乙醯半乳糖胺(UDP-GalNAc)、UDP-N-乙醯甘露糖胺(UDP-ManNAc)、GDP-岩藻糖(GDP-Fuc)、GDP-甘露糖(GDP-Man)、UDP-葡萄糖(UDP-Glc)、CMP-N-乙醯基神經胺酸(CMP-Neu5Ac)、CMP-N-乙醇醯神經胺酸(CMP-Neu5Gc)、UDP-葡萄糖醛酸鹽、UDP-半乳糖醛酸鹽、GDP-鼠李糖以及UDP-木糖。 28. 根據實施例23至27中任一項之細胞,其中該核苷酸-糖為UDP-半乳糖,且該醣基轉移酶為N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶或N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶。 29. 根據實施例23至28中任一項之細胞,其中該雙醣為乳-N-雙糖(Gal-b1,3-GlcNAc)或N-乙醯乳糖胺(Gal-b1,4-GlcNAc),或其中該寡醣在該還原端具有乳-N-雙糖(Gal-b1,3-GlcNAc)或N-乙醯乳糖胺(Gal-b1,4-GlcNAc)。 30. 根據實施例23至29中任一項之細胞,其中該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶為醣基轉移酶,其具有: a. PFAM域PF00535,且 i) 包括SEQ ID NO 01的序列[AGPS]XXLN(X n)RXDXD,其中X是任何胺基酸,其中n為12至17,或 ii) 包括SEQ ID NO 02的序列PXXLN(X n)RXDXD(X m)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是12至17且m是100至115,或 iii) 包括根據SEQ ID NO:03、04、05、06、07或08中的任一的多肽序列,或 iv) 為SEQ ID NO:03、04、05、06、07或08中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:03、04、05、06、07或08中的任一的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 v) 包括來自SEQ ID NO:03、04、05、06、07或08中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或者 b. PFAM域IPR002659,且 i) 包括SEQ ID NO 09的序列KT(X n)[FY]XXKXDXD(X m)[FHY]XXG(X,無A、G、S)(X p)X(無F、H、W、Y)[DE]D[ILV]XX[AG],其中X是任何胺基酸,其中n是13至16,m是35至70,且p是20至45,或 ii) 包括根據SEQ ID NO:10、11、12或13中的任一的多肽序列,或 iii) 為SEQ ID NO:10、11、12或13中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:10、11、12或13的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 iv) 包括來自SEQ ID NO:10、11、12或13中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性。 31. 根據實施例23至29中任一項之細胞,其中該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶為醣基轉移酶,其具有: a. PFAM域PF01755,且 i) 包括SEQ ID NO 14的序列EXXCXXSHXX[ILV][FWY](X n)EDD(X m)[ACGST]XXYX[ILMV],其中X是任何胺基酸,其中n為13至15且m是50至76,或 ii) 包括根據SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一的多肽序列,或 iii) 為SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 iv) 包括來自SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 b. PFAM域PF00535,且 i) 包括SEQ ID NO 24的序列R[KN]XXXXXXXGXXXX[FL]XDXD(X n)[FHW]XXX[FHNY](X m)E[DE],其中X是任何胺基酸,其中n是50至75,m是10至30,或 ii) 包括SEQ ID NO 25的序列R[KN]XXXXXXXGXXXXFXDXD(X n)[FHW]XXX[FHNY](X m)E[DE](X p)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是50至75,m是10至30,且p是20至25,或 iii) 包括根據SEQ ID NO:26、27或28中的任一的多肽序列,或 iv) 為SEQ ID NO:26、27或28中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:26、27或28的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v) 包括來自SEQ ID NO:26、27或28中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 c. PFAM域PF02709且不具有PFAM域PF00535,且 i) 包括SEQ ID NO 29的序列[FWY]XX[FY][FWY](X 23)[FWY][GQ]X[DE]D,其中X是任何胺基酸,或 ii) 包括SEQ ID NO 30的序列[PV]W[GHNP](X n)[FWY][GQ]X[DE]D,其中X是任何胺基酸,其中n是21至24,或 iii) 包括根據SEQ ID NO:31、32、33、34、35或36中的任一的多肽序列,或 iv) 為SEQ ID NO:31、32、33、34、35或36中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:31、32、33、34、35或36的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v) 包括來自SEQ ID NO:31、32、33、34、35或36中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 d. PFAM域PF03808,且 i) 包括SEQ ID NO 37的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA,其中X是任何胺基酸,且其中n是20至25,或 ii) 包括SEQ ID NO 38的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA(X m)[HR]XG[FWY](X p)GXGXXXQ[DE],其中X是任何胺基酸,其中n是20至25,m是40至50,且p是22至30,或 iii) 包括根據SEQ ID NO:39、40或41中的任一的多肽序列,或 iv) 為SEQ ID NO:39、40或41中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:39、40或41的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v) 包括來自SEQ ID NO:39、40或41中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性。 32. 根據實施例23至31中任一項之細胞,其中 a. 該N-乙醯葡萄糖胺-6-磷酸轉移酶為包括UniProt ID P43577的多肽的多肽序列,或為UniProt ID P43577的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P43577的多肽全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺-6-磷酸轉移酶活性,且 b. 該L-麩醯胺—D-果糖-6-磷酸轉胺酶為包括UniProt ID P17169的多肽的多肽序列,或為具有UniProt ID P17169的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P17169的多肽全長的至少80%整體序列同一性,且具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性;或為與UniProt ID P17169多肽不同的A39T、R250C和G472S突變的修飾版本。 33. 根據實施例23至32中任一項之細胞,其中該細胞可代謝碳源,其選自包含下列列舉之群組: 葡萄糖、果糖、半乳糖、乳糖、蔗糖、麥芽糖、麥芽-寡醣、麥芽三糖、山梨醇、木糖、鼠李糖、甘露糖、甲醇、乙醇、阿拉伯糖、海藻糖、澱粉、纖維素、半纖維素、糖蜜、玉米浸液、高果糖漿、甘油、乙酸鹽、檸檬酸鹽、乳酸、丙酮酸。 34. 根據實施例23至33中任一項之細胞,其中該細胞無法將N-乙醯葡萄糖胺-6-磷酸鹽轉換成葡萄糖胺-6-磷酸鹽,及/或無法將葡萄糖胺-6-磷酸鹽轉換成果糖-6-磷酸鹽。 35. 根據實施例23至34中任一項之細胞,其中該細胞經修飾以產生GDP-岩藻糖。 36. 根據實施例23至35中任一項之細胞,其中該細胞經修飾以促進GDP-岩藻糖產生,其中該修飾選擇自包含下列列舉之群組:UDP-葡萄糖:十一異戊二烯-磷酸葡萄糖-1-磷酸轉移酶編碼基因的剃除、GDP-L-岩藻糖合成酶編碼基因的過度表現、GDP-甘露糖4,6-脫水酶編碼基因的過度表現、甘露糖-1-磷酸鹽鳥苷酸轉移酶編碼基因的過度表現、磷酸甘露糖變位酶編碼基因的過度表現、或甘露糖-6-磷酸鹽異構酶編碼基因的過度表現。 37. 根據實施例23至36中任一項之細胞,其中該細胞經修飾以產生UDP-半乳糖。 38. 根據實施例23至37中任一項之細胞,其中該細胞經修飾以促進UDP-半乳糖產生,其中該修飾選擇自包含下列列舉之群組:5’-核苷酸酶/UDP-糖水解酶編碼基因的剃除或半乳糖-1-磷酸鹽尿苷醯轉移酶編碼基因的剃除。 39. 根據實施例23至38中任一項之細胞,其中該細胞經修飾以產生CMP-N-乙醯基神經胺酸。 40. 根據實施例23至39中任一項之細胞,其中該細胞經修飾以促進CMP-N-乙醯基神經胺酸產生,其中該修飾選擇自包含下列列舉之群組:CMP-唾液酸合成酶編碼基因的過度表現、唾液酸合成酶編碼基因的過度表現、N-乙醯基-D-葡萄糖胺2-表異構酶編碼基因的過度表現。 41. 根據實施例23至40中任一項之細胞,其中該細胞能夠表現至少一種其他醣基轉移酶,且其中該其他醣基轉移酶選自包括下列之群組:岩藻糖基轉移酶、唾液酸轉移酶、半乳糖基轉移酶、葡萄糖基轉移酶、甘露醣基轉移酶、N-乙醯基葡糖胺轉移酶、N-乙醯基半乳糖胺轉移酶、N-乙醯基甘露糖胺轉移酶、木醣基轉移酶、葡萄糖醛酸苷轉移酶、半乳醣醛酸轉移酶、葡萄糖胺轉移酶、N-乙醇醯神經胺轉移酶、鼠李糖基轉移酶。 42. 根據實施例41之細胞,其中該細胞在該其他醣基轉移酶的表現或活性方面被修飾。 43. 根據實施例23至41中任一項之細胞,其中該寡醣選自包括下列之列舉:2-岩藻糖基乳-N-雙糖、4-岩藻糖基乳-N-雙糖、2-4-二岩藻糖基乳-N-雙糖、3’-唾液酸乳-N-雙糖、6’-唾液酸乳-N-雙糖、3’,6’-二唾液酸乳-N-雙糖、6,6’-二唾液酸乳-N-雙糖、2’-岩藻糖基-3’-唾液酸乳-N-雙糖、2’-岩藻糖基-6’-唾液酸乳-N-雙糖、4-岩藻糖基-3’-唾液酸乳-N-雙糖、4-岩藻糖基-6’-唾液酸乳-N-雙糖、2-岩藻糖基N-乙醯乳糖胺、3’-岩藻糖基N-乙醯乳糖胺、2,3’-二岩藻糖基N-乙醯乳糖胺、3’-唾液酸N-乙醯乳糖胺、6’-唾液酸N-乙醯乳糖胺、3’,6’-二唾液酸N-乙醯乳糖胺、6,6’-二唾液酸N-乙醯乳糖胺、2’-岩藻糖基-3’-唾液酸N-乙醯乳糖胺、2’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、3-岩藻糖基-3’-唾液酸N-乙醯乳糖胺、3’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、P1三醣(Gal-a1,4-Gal-b1,4-GlcNAc)、異源移植抗原決定位(Gal-a1,3-Gal-b1,4-GlcNAc)、Gal-b14-(Galb13)-GlcNAc、聚-N-乙醯乳糖胺、GalNAc-b1,3-Gal-b1,4-GlcNAc。 44. 根據實施例23至43中任一項之細胞或根據實施例1至22中任一項之方法,其中該細胞選自由微生物、植物或動物細胞所組成之群組,較佳地,該微生物為細菌、真菌或酵母,較佳地,該植物為棉花、油菜籽、大豆、玉米或穀類植物,較佳地,該動物為昆蟲類、魚類、鳥類或非人類哺乳動物;較佳地,該細胞為大腸桿菌細胞。 45. 根據實施例23至44中任一項之細胞或根據實施例1至22或44中任一項之方法,其中該細胞為細菌細胞,較佳為大腸桿菌菌株,更佳為大腸桿菌菌株K12菌株,又更佳地,該大腸桿菌菌株K12菌株為大腸桿菌MG1655。 46. 根據實施例23至45中任一項之細胞或根據實施例1至22、44或45中任一項之方法,其中該細胞為酵母菌細胞。 47. 根據實施例1至22、44至46中任一項之方法,其中該分離包括下列列舉的至少一種:澄清、超微過濾、奈米過濾、逆滲透、微過濾、活性炭或碳處理、切向流高性能過濾、切向流超微過濾、親和層析、離子交換層析、疏水交互作用層析及/或凝膠過濾、配體交換層析。 48. 根據實施例1至22、44至47中任一項之方法,其進一步包括自該細胞純化該雙醣或寡醣。 49. 根據實施例1至22、44至48中任一項之方法,其中該純化包括下列步驟的至少一種:活性炭或碳的使用、炭的使用、奈米過濾、超微過濾或離子交換、醇類的使用、含水的醇類混合物的使用、結晶、蒸發、沉澱、乾燥、噴霧乾燥或凍乾。 50. 一種根據實施例23至46中任一項之細胞用於產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣,較佳為用於產生LNB或LacNAc,更佳為用於產生唾液酸化或岩藻糖基化形式的LNB或LacNAc之用途。 此外,本發明關於以下較佳特定實施例: 1. 一種藉由細胞,較佳為單一細胞產生還原端具有N-乙醯葡萄糖胺單元的寡醣或雙醣之方法,該方法包括以下步驟: a. 提供細胞,該細胞能夠:(i)合成核苷酸-糖及單醣N-乙醯葡萄糖胺(GlcNAc)、以及(ii)表現醣基轉移酶以醣化該GlcNAc單醣,而產生該雙醣或寡醣, b. 在允許產生該雙醣或寡醣的條件下培養該細胞, c. 較佳地,自培養物分離該雙醣或寡醣。 2. 一種藉由細胞產生還原端具有N-乙醯葡萄糖胺單元的寡醣之方法,該方法包括以下步驟: a. 提供細胞,該細胞能夠:(i)合成核苷酸-糖及單醣N-乙醯葡萄糖胺(GlcNAc)、以及(ii) 表現醣基轉移酶以醣化該GlcNAc單醣,而產生該寡醣, b. 在允許產生該寡醣的條件下培養該細胞, c. 較佳地,自該培養物分離該寡醣。 3. 一種藉由細胞用於產生混合物之方法,該混合物包括:(i)還原端具有N-乙醯葡萄糖胺單元的雙醣及/或寡醣、以及(ii)一或多種基於乳糖的哺乳動物乳寡醣(MMOs),該方法包括以下步驟: a. 提供細胞,該細胞能夠:(i)合成核苷酸-糖及單醣N-乙醯葡萄糖胺(GlcNAc)、以及(ii)表現醣基轉移酶以醣化該 GlcNAc單醣,而產生該還原端具有N-乙醯葡萄糖胺單元的雙醣及/或寡醣, b. 在允許產生該混合物的條件下培養該細胞, c. 較佳地,自培養物分離該混合物。 4. 根據上述特定實施例中任一項之方法,其中該細胞表現至少一種N-乙醯葡萄糖胺-6-磷酸轉移酶及磷酸酶,以合成單醣N-乙醯葡萄糖胺。 5. 根據上述特定實施例中任一項之方法,其中該細胞表現至少一種醣基轉移酶,以醣化N-乙醯葡萄糖胺。 6. 根據上述特定實施例中任一項之方法,其中該細胞經基因改造,以產生該雙醣或寡醣。 7. 根據特定實施例6之方法,其中該細胞以一或多種基因表現模組進行修飾,其特徵在於任何該表現模組的表現形式是組成型或由天然誘導物所產生。 8. 根據特定實施例6或7之任一項之方法,其中該細胞包括編碼一蛋白質的相同編碼DNA序列的多個複製(multiple copies)。 9. 根據上述特定實施例中任一項之方法,其中該細胞在選自包括下列之群組之酵素的表現或活性方面被修飾:N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶、醣基轉移酶、L-麩醯胺—D-果糖-6-磷酸轉胺酶及UDP-葡萄糖4-表異構酶。 10. 根據上述特定實施例中任一項之方法,其中該核苷酸-糖選自包含下列之群組:UDP-半乳糖(UDP-Gal)、UDP-N-乙醯葡萄糖胺(UDP-GlcNAc)、UDP-N-乙醯半乳糖胺(UDP-GalNAc)、UDP-N-乙醯甘露糖胺(UDP-ManNAc)、GDP-岩藻糖(GDP-Fuc)、GDP-甘露糖(GDP-Man)、UDP-葡萄糖(UDP-Glc)、UDP-2-乙醯胺基-2,6-雙去氧--L阿拉伯-4-己酮醣、UDP-2-乙醯胺基-2,6-雙去氧--L-來蘇-4-己酮醣、UDP-N-乙醯基-L-鼠李糖胺(UDP-L-RhaNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-甘露糖)、dTDP-N-乙醯岩藻糖胺、UDP-N-乙醯岩藻糖胺(UDP-L-FucNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-半乳糖)、UDP-N-乙醯基-L-肺炎糖胺(UDP-L-PneNAC或UDP-2-乙醯胺基-2,6-雙去氧-L-塔羅糖)、UDP-N-乙醯胞壁酸、UDP-N-乙醯基-L-奎諾糖胺(UDP-L-QuiNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-葡萄糖)、GDP-L-異鼠李糖、CMP-N-乙醯基神經胺酸(CMP-Neu5Ac)、CMP-N-乙醇醯神經胺酸(CMP-Neu5Gc)、CMP-Neu4Ac、CMP-Neu5Ac9N 3、CMP-Neu4,5Ac 2、CMP-Neu5,7Ac 2、CMP-Neu5,9Ac 2、CMP-Neu5,7(8,9)Ac 2、UDP-葡萄糖醛酸鹽、UDP-半乳糖醛酸鹽、GDP-鼠李糖及UDP-木糖。 11. 根據上述特定實施例中任一項之方法,其中該核苷酸-糖為UDP-半乳糖,且該醣基轉移酶為N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶或N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶。 12. 根據上述特定實施例中任一項之方法,其中寡醣在該還原端具有乳-N-雙糖(Gal-b1,3-GlcNAc)或N-乙醯乳糖胺(Gal-b1,4-GlcNAc)。 13. 根據上述特定實施例中任一項之方法,其中該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶為醣基轉移酶,其具有: a. PFAM域PF00535,且 i. 包括SEQ ID NO 01的序列[AGPS]XXLN(X n)RXDXD,其中X是任何胺基酸,其中n為12至17,或 ii. 包括SEQ ID NO 02的序列PXXLN(X n)RXDXD(X m)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是12至17且m是100至115,或 iii. 包括根據SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的多肽序列,或 iv. 為SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 v. 包括來自SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 vi. 為SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 vii. 包括多肽,該多肽包括或由具有與SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或者 b. PFAM域IPR002659,且 i. 包括SEQ ID NO 09的序列KT(X n)[FY]XXKXDXD(X m)[FHY]XXG(X,無A、G、S)(X p)X(無F、H、W、Y)[DE]D[ILV]XX[AG],其中X是任何胺基酸,其中n是13至16,m是35至70,且p是20至45,或 ii. 包括根據SEQ ID NO:10、11、12或13中的任一的多肽序列,或 iii. 為SEQ ID NO:10、11、12或13中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:10、11、12或13的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 iv. 包括來自SEQ ID NO:10、11、12或13中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 v. 為SEQ ID NO:10、11、12或13中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 vi. 包括多肽,該多肽包括或由具有與SEQ ID NO:10、11、12或13中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性。 14. 根據上述特定實施例1至12之任一項之方法,其中該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶為醣基轉移酶,其具有: a. PFAM域PF01755,且 i. 包括SEQ ID NO 14的序列EXXCXXSHXX[ILV][FWY](X n)EDD(X m)[ACGST]XXYX[ILMV],其中X是任何胺基酸,其中n為13至15且m是50至76,或 ii. 包括根據SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的多肽序列,或 iii. 為SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 iv. 包括來自SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v. 為SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的功能片段,且具有具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vi. 包括多肽,該多肽包括或由具有與SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 b. PFAM域PF00535,且 i. 包括SEQ ID NO 24的序列R[KN]XXXXXXXGXXXX[FL]XDXD(X n)[FHW]XXX[FHNY](X m)E[DE],其中X是任何胺基酸,其中n是50至75,m是10至30,或 ii. 包括SEQ ID NO 25的序列R[KN]XXXXXXXGXXXXFXDXD(X n)[FHW]XXX[FHNY](X m)E[DE](X p)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是50至75,m是10至30,且p是20至25,或 iii. 包括根據SEQ ID NO:26、27或28中的任一的多肽序列,或 iv. 為SEQ ID NO:26、27或28中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:26、27或28的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v. 包括來自SEQ ID NO:26、27或28中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vi. 為SEQ ID NO:26、27或28中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vii. 包括多肽,該多肽包括或由具有與SEQ ID NO:26、27或28中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 c. PFAM域PF02709且不具有PFAM域PF00535,且 i. 包括SEQ ID NO 29的序列[FWY]XX[FY][FWY](X 23)[FWY][GQ]X[DE]D,其中X是任何胺基酸,或 ii. 包括SEQ ID NO 30的序列[PV]W[GHNP](X n)[FWY][GQ]X[DE]D,其中X是任何胺基酸,其中n是21至24,或 iii. 包括根據SEQ ID NO:31、32、33、34、35或36中的任一的多肽序列,或 iv. 為SEQ ID NO:31、32、33、34、35或36中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:31、32、33、34、35或36的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性 and 具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v. 包括來自SEQ ID NO:31、32、33、34、35或36中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vi. 為SEQ ID NO:31、32、33、34、35或36中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vii. 包括多肽,該多肽包括或由具有與SEQ ID NO:31、32、33、34、35或36中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 d. PFAM域PF03808,且 i. 包括SEQ ID NO 37的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA,其中X是任何胺基酸,且其中n是20至25,或 ii. 包括SEQ ID NO 38的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA(X m)[HR]XG[FWY](X p)GXGXXXQ[DE],其中X是任何胺基酸,其中n是20至25,m是40至50,且p是22至30,或 iii. 包括根據SEQ ID NO:39、40或41中的任一的多肽序列,或 iv. 為SEQ ID NO:39、40或41中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:39、40或41的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v. 包括來自SEQ ID NO:39、40或41中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vi. 為SEQ ID NO:39、40或41中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vii. 包括多肽,該多肽包括或由具有與SEQ ID NO:39、40或41中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性。 15. 根據上述特定實施例中任一項之方法,其中 a. 該N-乙醯葡萄糖胺-6-磷酸轉移酶為包括UniProt ID P43577的多肽的多肽序列、或為UniProt ID P43577的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P43577的多肽全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺-6-磷酸轉移酶活性,以及 b. 該L-麩醯胺—D-果糖-6-磷酸轉胺酶為包括UniProt ID P17169的多肽的多肽序列、或為具有UniProt ID P17169的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P17169的多肽全長的至少80%整體序列同一性,且具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性;或為與UniProt ID P17169多肽不同的A39T、R250C和G472S突變的修飾版本。 16. 根據上述特定實施例中任一項之方法,其中該細胞可代謝碳源,其選自包含下列列舉之群組:葡萄糖、果糖、半乳糖、乳糖、蔗糖、麥芽糖、麥芽-寡醣、麥芽三糖、山梨醇、木糖、鼠李糖、甘露糖、甲醇、乙醇、阿拉伯糖、海藻糖、澱粉、纖維素、半纖維素、玉米浸液、高果糖漿、糖蜜、甘油、乙酸鹽、檸檬酸鹽、乳酸、丙酮酸。 17. 根據上述特定實施例中任一項之方法,其中該細胞無法將N-乙醯葡萄糖胺-6-磷酸鹽轉換成葡萄糖胺-6-磷酸鹽,及/或無法將葡萄糖胺-6-磷酸鹽轉換成果糖-6-磷酸鹽。 18. 根據上述特定實施例中任一項之方法,其中該細胞經修飾以產生GDP-岩藻糖。 19. 根據上述特定實施例中任一項之方法,其中該細胞經修飾以促進GDP-岩藻糖產生,其中該修飾選擇自包含下列列舉之群組:UDP-葡萄糖:十一異戊二烯-磷酸葡萄糖-1-磷酸轉移酶編碼基因的剃除、GDP-L-岩藻糖合成酶編碼基因的過度表現、GDP-甘露糖4,6-脫水酶編碼基因的過度表現、甘露糖-1-磷酸鹽鳥苷酸轉移酶編碼基因的過度表現、磷酸甘露糖變位酶編碼基因的過度表現、或甘露糖-6-磷酸鹽異構酶編碼基因的過度表現。 20. 根據上述特定實施例中任一項之方法,其中該細胞經修飾以產生UDP-半乳糖。 21. 根據上述特定實施例中任一項之方法,其中該細胞經修飾以促進UDP-半乳糖產生,其中該修飾選擇自包含下列列舉之群組:5’-核苷酸酶/UDP-糖水解酶編碼基因的剃除或半乳糖-1-磷酸鹽尿苷醯轉移酶編碼基因的剃除。 22. 根據上述特定實施例中任一項之方法,其中該細胞經修飾以產生CMP-N-乙醯基神經胺酸。 23. 根據上述特定實施例中任一項之方法,其中該細胞經修飾以促進CMP-N-乙醯基神經胺酸產生,其中該修飾選擇自包含下列列舉之群組:CMP-唾液酸合成酶編碼基因的過度表現、唾液酸合成酶編碼基因的過度表現、N-乙醯基-D-葡萄糖胺2-表異構酶編碼基因的過度表現。 24. 根據上述特定實施例中任一項之方法,其中該細胞能夠表現至少一種其他醣基轉移酶,其中該其他醣基轉移酶選自包括下列之群組:岩藻糖基轉移酶、唾液酸轉移酶、半乳糖基轉移酶、葡萄糖基轉移酶、甘露醣基轉移酶、N-乙醯基葡糖胺轉移酶、N-乙醯基半乳糖胺轉移酶、N-乙醯基甘露糖胺轉移酶、木醣基轉移酶、葡萄糖醛酸苷轉移酶、半乳醣醛酸轉移酶、葡萄糖胺轉移酶、N-乙醇醯神經胺轉移酶、鼠李糖基轉移酶、N-乙醯基鼠李糖基轉移酶、UDP-4-胺基-4,6-雙去氧-N-乙醯基-β-L-阿卓糖胺轉胺酶(UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminases), UDP-N-乙醯葡萄糖胺烯醇丙酮基轉移酶(UDP- N-acetylglucosamine enolpyruvyl transferases)和岩藻糖胺基轉移酶(fucosaminyltransferases), - 較佳地,該岩藻糖基轉移酶選自包括下列列舉:α-1,2-岩藻糖基轉移酶、α-1,3-岩藻糖基轉移酶、α-1,4-岩藻糖基轉移酶及α-1,6-岩藻糖基轉移酶, - 較佳地,該唾液酸轉移酶選自包括下列列舉:α-2,3-唾液酸轉移酶、α-2,6-唾液酸轉移酶及α-2,8-唾液酸轉移酶, - 較佳地,該半乳糖基轉移酶選自包括下列列舉:β-1,3-半乳糖基轉移酶、N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶、β-1,4-半乳糖基轉移酶、N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶、α-1,3-半乳糖基轉移酶及α-1,4-半乳糖基轉移酶, - 較佳地,該葡萄糖基轉移酶選自包括下列列舉:α-葡萄糖基轉移酶、β-1,2-葡萄糖基轉移酶、β-1,3-葡萄糖基轉移酶及β-1,4-葡萄糖基轉移酶, - 較佳地,該甘露糖基轉移酶(mannosyltransferase)選自包括下列列舉:α-1,2-甘露糖基轉移酶、α-1,3-甘露糖基轉移酶及α-1,6-甘露糖基轉移酶, - 較佳地,該N-乙醯基葡糖胺轉移酶選自包括下列列舉:β-1,3-N-乙醯基葡糖胺轉移酶及β-1,6-N-乙醯基葡糖胺轉移酶, - 較佳地,該N-乙醯基半乳糖胺轉移酶為α-1,3-N-乙醯基半乳糖胺轉移酶。 25. 根據特定實施例24之方法,其中該細胞在該其他醣基轉移酶的表現或活性方面被修飾。 26. 根據上述特定實施例中任一項之方法,其中該細胞使用用於產生該在還原端具有GlcNAc單元的雙醣或寡醣的一或多種前驅物,該前驅物從培養基供給該細胞。 27. 根據上述特定實施例中任一項之方法,其中該細胞產生一或多種前驅物,其用於產生該在還原端具有GlcNAc單元的雙醣或寡醣。 28. 根據特定實施例26或27中任一項之方法,其中用於產生該雙醣或寡醣之前驅物完全轉化為還原端具有GlcNAc單元的雙醣或寡醣。 29. 根據上述特定實施例中任一項之方法,其中該細胞在細胞內產生還原端具有GlcNAc單元的雙醣或寡醣,且其中部分或實質上全部的所產生的還原端具有GlcNAc單元的雙醣或寡醣保留在細胞內及/或經由被動或主動運輸排出細胞外。 30. 根據上述特定實施例中任一項之方法,其中該細胞表現膜轉運蛋白或具有轉運活性的多肽,以轉運化合物穿過細胞壁的外膜, 較佳地,該細胞在該膜轉運蛋白或具有轉運活性的多肽的表現或活性方面被修飾。 31. 根據特定實施例30之方法,其中該膜轉運蛋白或具有轉運活性的多肽選自包括下列列舉:運輸蛋白、P-P-鍵-水解-驅動的轉運體、β-桶狀孔蛋白、輔助轉運蛋白、推定轉運蛋白及磷酸轉移-驅動組轉位蛋白, 較佳地,該運輸蛋白包括MFS轉運體、糖排出轉運體及螯鐵蛋白輸出體, 較佳地,該P-P-鍵-水解-驅動的轉運體包括ABC轉運體及螯鐵蛋白輸出體。 32. 根據特定實施例30或31中任一項之方法,其中該膜轉運蛋白或具有轉運活性的多肽控制該還原端具有GlcNAc單元的雙醣或寡醣及/或一或多種前驅物及/或接受者在細胞壁外膜上的流動,該一或多種前驅物及/或接受者用於產生該還原端具有GlcNAc單元的雙醣或寡醣。 33. 根據特定實施例30或32中任一項之方法,其中該膜轉運蛋白或具有轉運活性的多肽提供該還原端具有GlcNAc單元的雙醣或寡醣的改善產生及/或允許排出及/或促進排出。 34. 根據特定實施例6或33中任一項之方法,其中該細胞包括與未修飾的先驅細胞相比,用於降低乙酸鹽產生的修飾。 35. 根據特定實施例34之方法,其中該細胞包括與未修飾的先驅細胞相比,任一或多種蛋白質的較低或減少的表現及/或消除、受損、降低或延遲的活性,該蛋白質包含:β-半乳糖苷酶、半乳糖苷O-乙醯轉移酶、N-乙醯葡萄糖胺-6-磷酸鹽去乙醯酶、葡萄糖胺-6-磷酸鹽脫胺酶、N-乙醯葡萄糖胺抑制蛋白、核糖核苷酸單磷酸酶、EIICBA-Nag、UDP-葡萄糖:十一異戊二烯-磷酸葡萄糖-1-磷酸轉移酶、L-岩藻酮糖激酶、L-岩藻糖異構酶、N-乙醯神經胺酸解離酶、N-乙醯甘露糖胺激酶、N-乙醯甘露糖胺-6-磷酸鹽2-表異構酶、EIIAB-Man、EIIC-Man、EIID-Man、ushA、半乳糖-1-磷酸鹽尿苷醯轉移酶、葡萄糖-1-磷酸鹽腺苷醯轉移酶、葡萄糖-1-磷酸酶、ATP-依賴性6-磷酸果糖激酶同功酶1、ATP-依賴性6-磷酸果糖激酶同功酶2、葡萄糖-6-磷酸鹽異構酶、有氧呼吸調控蛋白、轉錄抑制蛋白IclR、lon蛋白酶、葡萄糖特異性轉位磷酸轉移酶酶IIBC成分ptsG、葡萄糖特異性轉位磷酸轉移酶(PTS)酶IIBC成分malX、enzyme IIA Glc、β-葡萄糖苷特異性PTS酶II、果糖特異性PTS多磷醯轉移蛋白FruA及FruB、乙醇脫氫酶醛脫氫酶、丙酮酸-甲酸鹽解離酶、乙酸鹽激酶、磷醯基轉移酶、磷酸乙醯轉移酶、丙酮酸去羧酶。 36. 根據上述特定實施例中任一項之方法,其中該細胞能夠產生磷酸烯醇丙酮酸(PEP)。 37. 根據特定實施例6或36中任一項之方法,其中該細胞與未修飾的先驅細胞相比,具有用於磷酸烯醇丙酮酸(PEP)的促進產生及/或供應的修飾。 38. 根據特定實施例6至37中任一項之方法,其中該細胞包含至少部分失活的所選單醣、雙醣或寡醣的分解代謝途徑,該單醣、雙醣或寡醣參與該還原端具有GlcNAc單元的雙醣或寡醣的產生及/或為產生該還原端具有GlcNAc單元的雙醣或寡醣所需。 39. 根據上述特定實施例中任一項之方法,其中當該細胞在乳糖與一或多種其他碳源結合的環境中生長時,該細胞抵抗乳糖殺傷現象。 40. 根據上述特定實施例中任一項之方法,其中該細胞在整個培養液及/或上清液產生90 g/L或多於90 g/L的該還原端具有GlcNAc的雙醣或寡醣、及/或其中在整個培養液及/或上清液中的該還原端具有GlcNAc的雙醣或寡醣具有至少80%的純度,其在整個培養液及/或上清液中分別以該還原端具有GlcNAc單元的雙醣或寡醣及其前驅物的總量計。 41. 根據上述特定實施例中任一項之方法,其中該細胞在培養基中穩定地培養。 42. 根據上述特定實施例中任一項之方法,其中該條件包括: - 使用包括至少一種前驅物及/或接受者的培養基,以用於產生該還原端具有GlcNAc單元的雙醣或寡醣,及/或 - 添加至少一種前驅物及/或接受者原料至培養基,以用於產生該還原端具有GlcNAc單元的雙醣或寡醣。 43. 根據上述特定實施例中任一項之方法,該方法包括下列步驟中的至少一者: i) 使用包括至少一種前驅物及/或接受者的培養基; ii) 向反應器中的培養基添加至少一種前驅物及/或接受者原料,其中總反應器體積範圍為250 mL(毫升)至10,000 m 3(立方米),較佳以連續方式,並且較佳使得培養基的最終體積不超過在添加該前驅物及/或接受者原料之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍; iii) 向反應器中的培養基添加至少一種前驅物及/或接受者原料,其中總反應器體積範圍為250 mL(毫升)至10,000 m 3(立方米), 較佳以連續方式,並且較佳使得培養基的最終體積不超過在添加該前驅物及/或接受者原料之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍,其中較佳地,該前驅物及/或接受者原料的pH設定在3與7之間,且較佳地,該前驅物及/或接受者原料的溫度維持在20°C與80°C之間; iv) 藉由進料溶液的手段在1天、2天、3天、4天、5天的過程中以連續方式添加至少一種前驅物及/或接受者原料至培養基; v) 藉由進料溶液的手段在1天、2天、3天、4天、5天的過程中以連續方式添加至少一種前驅物及/或接受者原料至培養基,其中較佳地,該進料溶液的pH設定在3與7之間,且較佳地,該進料溶液的溫度維持在20°C與80°C之間; 該方法產生該還原端具有GlcNAc單元的雙醣或寡醣,其在最終培養物中的濃度為至少50g/L,較佳為至少75g/L,更佳為至少90g/L,更佳為至少100g/L,更佳為至少125g/L,更佳為至少150g/L,更佳為至少175g/L,更佳為至少200g/L。 44. 根據特定實施例1至42中任一項之方法,該方法包括下列步驟中的至少一者: i) 使用每公升初始反應器體積包含至少50克,更佳為至少75克,更佳為至少100克,更佳為至少120克,更佳為至少150克乳糖的培養基,其中反應器體積範圍為250 mL至10,000 m 3(立方米); ii) 添加每公升初始反應器體積包含至少50克,更佳為至少75克,更佳為至少100克,更佳為至少120克,更佳為至少150克乳糖的乳糖原料至培養基,其中較佳以連續方式,且較佳地,使得培養基的最終體積不超過在添加該乳糖原料之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍; iii) 添加每公升初始反應器體積包含至少50克,更佳為至少75克,更佳為至少100克,更佳為至少120克,更佳為至少150克乳糖的乳糖原料至培養基,其中反應器體積範圍為250 mL至10,000 m 3(立方米),較佳以連續方式,且較佳地,使得培養基的最終體積不超過在添加該乳糖原料之前的培養基體積的三倍,較佳不超過兩倍,更佳小於兩倍,其中較佳地,該乳糖原料的pH設定在3與7之間,且較佳地,該乳糖原料的溫度維持在20°C與80°C之間; iv) 藉由進料溶液的手段在1天、2天、3天、4天、5天的過程中以連續方式添加乳糖原料至培養基; v) 藉由進料溶液的手段在1天、2天、3天、4天、5天的過程中以連續方式添加乳糖原料至培養基,其中該乳糖進料溶液的濃度為50 g/L,較佳為75 g/L,更佳為100 g/L,更佳為125 g/L,更佳為150 g/L,更佳為175 g/L,更佳為200 g/L,更佳為225 g/L,更佳為250 g/L,更佳為275 g/L,更佳為300 g/L,更佳為325 g/L,更佳為350 g/L,更佳為375 g/L,更佳為400 g/L,更佳為450 g/L,更佳為500 g/L,又更佳為550 g/L,最佳為600 g/L;其中較佳地,該進料溶液的pH設定在3與7之間,且較佳地,該進料溶液的溫度維持在20°C與80°C之間; 該方法產生該還原端具有GlcNAc單元的雙醣或寡醣,其在最終培養物中的濃度為至少50g/L,較佳為至少75g/L,更佳為至少90g/L,更佳為至少100g/L,更佳為至少125g/L,更佳為至少150g/L,更佳為至少175g/L,更佳為至少200g/L。 45. 根據特定實施例44之方法,其中該乳糖原料是藉由從培養開始以至少5 mM,較佳以30、40、50、60、70、80、90、100、150mM的濃度添加乳糖,更佳為以> 300 mM的濃度添加乳糖而完成。 46. 根據特定實施例44或45中任一項之方法,其中該乳糖原料是藉由將乳糖以一定濃度添加至培養物中而完成,使得在培養物的整個生產階段獲得至少5mM,較佳為10mM或30mM的乳糖濃度。 47. 根據上述特定實施例中任一項之方法,其中該細胞培養至少約60、80、100或約120小時或以連續方式培養。 48. 根據上述特定實施例中任一項之方法,其中該培養基包含選自包括乳糖、半乳糖、岩藻糖及唾液酸的群組的至少一種前驅物。 49. 根據上述特定實施例中任一項之方法,其中藉由向包含前驅物的培養基添加碳類基質,較佳為葡萄糖或蔗糖,而提供指數細胞生長的第一階段,接著在第二階段,僅將碳類基質,較佳為葡萄糖或蔗糖,添加到培養基中。 50. 根據特定實施例1至49中任一項之方法,其中藉由向包含前驅物的培養基中加入碳類基質,較佳為葡萄糖或蔗糖,而提供指數細胞生長的第一階段,接著在第二階段,其中碳類基質,較佳為葡萄糖或蔗糖,及前驅物添加到培養基中。 51. 根據上述特定實施例中任一項之方法,其中該細胞產生混合物,該混合物為包含至少一種還原端具有GlcNAc單元的雙醣或寡醣之帶電的,較佳為唾液酸化的雙醣及/或寡醣及/或中性的雙醣及/或寡醣。 52. 根據上述特定實施例中任一項之方法,其中該細胞產生混合物,該混合物為包含至少還原端具有GlcNAc單元的寡醣之帶電的,較佳為唾液酸化的寡醣及/或中性的寡醣。 53. 根據上述特定實施例中任一項之方法,其中該寡醣選自包括下列之列舉:2-岩藻糖基乳-N-雙糖、4-岩藻糖基乳-N-雙糖、2-4-二岩藻糖基乳-N-雙糖、3’-唾液酸乳-N-雙糖、6’-唾液酸乳-N-雙糖、3’,6’-二唾液酸乳-N-雙糖、6,6’-二唾液酸乳-N-雙糖、2’-岩藻糖基-3’-唾液酸乳-N-雙糖、2’-岩藻糖基-6’-唾液酸乳-N-雙糖、4-岩藻糖基-3’-唾液酸乳-N-雙糖、4-岩藻糖基-6’-唾液酸乳-N-雙糖、2-岩藻糖基N-乙醯乳糖胺、3’-岩藻糖基N-乙醯乳糖胺、2,3’-二岩藻糖基N-乙醯乳糖胺、3’-唾液酸N-乙醯乳糖胺、6’-唾液酸N-乙醯乳糖胺、3’,6’-二唾液酸N-乙醯乳糖胺、6,6’-二唾液酸N-乙醯乳糖胺、2’-岩藻糖基-3’-唾液酸N-乙醯乳糖胺、2’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、3-岩藻糖基-3’-唾液酸N-乙醯乳糖胺、3’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、P1三醣(Gal-a1,4-Gal-b1,4-GlcNAc)、異源移植抗原決定位(Gal-a1,3-Gal-b1,4-GlcNAc)、Gal-b14-(Galb13)-GlcNAc、聚-N-乙醯乳糖胺、GalNAc-b1,3-Gal-b1,4-GlcNAc。 54. 根據特定實施例1或3至53中任一項之方法,其中該還原端具有GlcNAc單元的雙醣不包括幾丁二糖(GlcNAc-GlcNAc)。 55. 根據上述特定實施例中任一項之方法,其中該還原端具有GlcNAc單元的寡醣在還原端不包括幾丁二糖,較佳為不包括N-聚醣。 56. 一種用於產生還原端具有N-乙醯葡萄糖胺單元的寡醣或雙醣之代謝工程細胞,其中該細胞能夠:(i)合成核苷酸-糖及單醣N-乙醯葡萄糖胺(GlcNAc)、以及(ii) 表現醣基轉移酶以醣化該 GlcNAc單醣,而產生該雙醣或寡醣。 57. 一種用於產生還原端具有N-乙醯葡萄糖胺單元的寡醣之代謝工程細胞,其中該細胞能夠:(i)合成核苷酸-糖及單醣N-乙醯葡萄糖胺(GlcNAc)、以及(ii)表現醣基轉移酶以醣化該GlcNAc單醣,而產生寡醣。 58. 一種用於產生混合物之代謝工程細胞,該混合物包括(i)還原端具有N-乙醯葡萄糖胺單元的雙醣及/或寡醣、以及(ii)一或多種基於乳糖的哺乳動物乳寡醣(MMOs),其中該細胞能夠:(i)合成核苷酸-糖及單醣N-乙醯葡萄糖胺(GlcNAc)、以及(ii)表現醣基轉移酶以醣化該GlcNAc單醣,而產生該還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣。 59. 根據特定實施例56或58中任一項之細胞,其中該細胞經代謝工程以產生該還原端具有N-乙醯葡萄糖胺的雙醣或寡醣。 60. 根據特定實施例57之細胞,其中該細胞經代謝工程以產生該還原端具有N-乙醯葡萄糖胺的寡醣。 61. 根據特定實施例56至60中任一項之細胞,其中該細胞以一或多種基因表現模組進行修飾,其特徵在於任何該表現模組的表現形式是組成型或由天然誘導物所產生。 62. 根據特定實施例56至61中任一項之細胞,其中該細胞包括編碼一蛋白質的相同編碼DNA序列的多個複製。 63. 根據特定實施例56至62中任一項之細胞,其中該細胞表現至少一種N-乙醯葡萄糖胺-6-磷酸轉移酶及磷酸酶,以合成N-乙醯葡萄糖胺。 64. 根據特定實施例56至63中任一項之細胞,其中該細胞表現至少一種醣基轉移酶,以醣化N-乙醯葡萄糖胺。 65. 根據特定實施例56至64中任一項之細胞,其中該細胞在選自包括下列之群組之酵素的表現或活性方面被修飾:N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶、醣基轉移酶、L-麩醯胺—D-果糖-6-磷酸轉胺酶及UDP-葡萄糖4-表異構酶。 66. 根據特定實施例56至65中任一項之細胞,其中該核苷酸-糖選自包含下列之群組:UDP-半乳糖(UDP-Gal)、UDP-N-乙醯葡萄糖胺(UDP-GlcNAc)、UDP-N-乙醯半乳糖胺(UDP-GalNAc)、UDP-N-乙醯甘露糖胺(UDP-ManNAc)、GDP-岩藻糖(GDP-Fuc)、GDP-甘露糖(GDP-Man)、UDP-葡萄糖(UDP-Glc)、UDP-2-乙醯胺基-2,6-雙去氧--L阿拉伯-4-己酮醣、UDP-2-乙醯胺基-2,6-雙去氧--L-來蘇-4-己酮醣、UDP-N-乙醯基-L-鼠李糖胺(UDP-L-RhaNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-甘露糖)、dTDP-N-乙醯岩藻糖胺、UDP-N-乙醯岩藻糖胺(UDP-L-FucNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-半乳糖)、UDP-N-乙醯基-L-肺炎糖胺(UDP-L-PneNAC或UDP-2-乙醯胺基-2,6-雙去氧-L-塔羅糖)、UDP-N-乙醯胞壁酸、UDP-N-乙醯基-L-奎諾糖胺(UDP-L-QuiNAc或UDP-2-乙醯胺基-2,6-雙去氧-L-葡萄糖)、GDP-L-異鼠李糖、CMP-N-乙醯基神經胺酸(CMP-Neu5Ac)、CMP-N-乙醇醯神經胺酸(CMP-Neu5Gc)、CMP-Neu4Ac、CMP-Neu5Ac9N 3、CMP-Neu4,5Ac 2、CMP-Neu5,7Ac 2、CMP-Neu5,9Ac 2、CMP-Neu5,7(8,9)Ac 2、UDP-葡萄糖醛酸鹽、UDP-半乳糖醛酸鹽、GDP-鼠李糖及UDP-木糖。 67. 根據特定實施例56至66中任一項之細胞,其中該核苷酸-糖為UDP-半乳糖,且該醣基轉移酶為N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶或N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶。 68. 根據特定實施例56至67中任一項之細胞,其中寡醣在該還原端具有乳-N-雙糖(Gal-b1,3-GlcNAc)或N-乙醯乳糖胺(Gal-b1,4-GlcNAc)。 69. 根據特定實施例56至68中任一項之細胞,其中該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶為醣基轉移酶,其具有: a. PFAM域PF00535,且 i. 包括SEQ ID NO 01的序列[AGPS]XXLN(X n)RXDXD,其中X是任何胺基酸,其中n為12至17,或 ii. 包括SEQ ID NO 02的序列PXXLN(X n)RXDXD(X m)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是12至17且m是100至115,或 iii. 包括根據SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的多肽序列,或 iv. 為SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 v. 包括來自SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 vi. 為SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 vii. 包括多肽,該多肽包括或由具有與SEQ ID NO:03、04、05、06、07或08中的任一,較佳為SEQ ID NO 03、04、05、06或07中的任一,更佳為SEQ ID NO 03、06或07中的任一,最佳為SEQ ID NO 03或06中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或者 b. PFAM域IPR002659,且 i. 包括SEQ ID NO 09的序列KT(X n)[FY]XXKXDXD(X m)[FHY]XXG(X,無A、G、S)(X p)X(無F、H、W、Y)[DE]D[ILV]XX[AG],其中X是任何胺基酸,其中n是13至16,m是35至70,且p是20至45,或 ii. 包括根據SEQ ID NO:10、11、12或13中的任一的多肽序列,或 iii. 為SEQ ID NO:10、11、12或13中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:10、11、12或13的該N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 iv. 包括來自SEQ ID NO:10、11、12或13中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 v. 為SEQ ID NO:10、11、12或13中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性,或 vi. 包括多肽,該多肽包括或由具有與SEQ ID NO:10、11、12或13中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶活性。 70. 根據特定實施例56至69中任一項之細胞,其中該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶為醣基轉移酶,其具有: a. PFAM域PF01755,且 i. 包括SEQ ID NO 14的序列EXXCXXSHXX[ILV][FWY](X n)EDD(X m)[ACGST]XXYX[ILMV],其中X是任何胺基酸,其中n為13至15且m是50至76,或 ii. 包括根據SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的多肽序列,或 iii. 為SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽全長的至少80%整體序列同一性且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 iv. 包括來自SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v. 為SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vi. 包括多肽,該多肽包括或由具有與SEQ ID NO:15、16、17、18、19、20、21、22或23中的任一,較佳為SEQ ID NO:15、16、17、18、20或21中的任一,更佳為SEQ ID NO:17、18、20或21中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 b. PFAM域PF00535,且 i. 包括SEQ ID NO 24的序列R[KN]XXXXXXXGXXXX[FL]XDXD(X n)[FHW]XXX[FHNY](X m)E[DE],其中X是任何胺基酸,其中n是50至75,m是10至30,或 ii. 包括SEQ ID NO 25的序列R[KN]XXXXXXXGXXXXFXDXD(X n)[FHW]XXX[FHNY](X m)E[DE](X p)[FWY]XX[HKR]XX[NQST],其中X是任何胺基酸,其中n是50至75,m是10至30,且p是20至25,或 iii. 包括根據SEQ ID NO:26、27或28中的任一的多肽序列,或 iv. 為SEQ ID NO:26、27或28中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:26、27或28的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v. 包括來自SEQ ID NO:26、27或28中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vi. 為SEQ ID NO:26、27或28中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vii. 包括多肽,該多肽包括或由具有與SEQ ID NO:26、27或28中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或者 c. PFAM域PF02709且不具有PFAM域PF00535,且 i. 包括SEQ ID NO 29的序列[FWY]XX[FY][FWY](X 23)[FWY][GQ]X[DE]D,其中X是任何胺基酸,或 ii. 包括SEQ ID NO 30的序列[PV]W[GHNP](X n)[FWY][GQ]X[DE]D,其中X是任何胺基酸,其中n是21至24,或 iii. 包括根據SEQ ID NO:31、32、33、34、35或36中的任一的多肽序列,或 iv. 為SEQ ID NO:31、32、33、34、35或36中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:31、32、33、34、35或36的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v. 包括來自SEQ ID NO:31、32、33、34、35或36中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vi. 為SEQ ID NO:31、32、33、34、35或36中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vii. 包括多肽,該多肽包括或由具有與SEQ ID NO:31、32、33、34、35或36中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 d. PFAM域PF03808,且 i. 包括SEQ ID NO 37的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA,其中X是任何胺基酸,且其中n是20至25,或 ii. 包括SEQ ID NO 38的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA(X m)[HR]XG[FWY](X p)GXGXXXQ[DE],其中X是任何胺基酸,其中n是20至25,m是40至50,且p是22至30,或 iii. 包括根據SEQ ID NO:39、40或41中的任一的多肽序列,或 iv. 為SEQ ID NO:39、40或41中的任一的功能性同源物、變體或衍生物,其具有與SEQ ID NO:39、40或41的該N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶多肽中的任一全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 v. 包括來自SEQ ID NO:39、40或41中的任一的至少8、9、10、11、12、13、14、15、16、17、18、19、20個連續胺基酸殘基的寡肽序列,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vi. 為SEQ ID NO:39、40或41中的任一的功能片段,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性,或 vii. 包括多肽,該多肽包括或由具有與SEQ ID NO:39、40或41中的任一的全長胺基酸序列的至少80%序列同一性的胺基酸序列所組成,且具有N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶活性。 71. 根據特定實施例56至70中任一項之細胞,其中 a. 該N-乙醯葡萄糖胺-6-磷酸轉移酶為包括UniProt ID P43577的多肽的多肽序列,或為UniProt ID P43577的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P43577的多肽全長的至少80%整體序列同一性,且具有N-乙醯葡萄糖胺-6-磷酸轉移酶活性,以及 b. 該L-麩醯胺—D-果糖-6-磷酸轉胺酶為包括UniProt ID P17169的多肽的多肽序列,或為具有UniProt ID P17169的多肽的功能性同源物、變體或衍生物,其具有與UniProt ID P17169的多肽全長的至少80%整體序列同一性,且具有L-麩醯胺—D-果糖-6-磷酸轉胺酶活性;為與UniProt ID P17169多肽不同的A39T、R250C和G472S突變的修飾版本。 72. 根據特定實施例56至71中任一項之細胞,其中該細胞可代謝碳源,其選自包含下列列舉之群組: 葡萄糖、果糖、半乳糖、乳糖、蔗糖、麥芽糖、麥芽-寡醣、麥芽三糖、山梨醇、木糖、鼠李糖、甘露糖、甲醇、乙醇、阿拉伯糖、海藻糖、澱粉、纖維素、半纖維素、玉米浸液、高果糖漿、糖蜜、甘油、乙酸鹽、檸檬酸鹽、乳酸、丙酮酸。 73. 根據特定實施例56至72中任一項之細胞,其中該細胞無法將N-乙醯葡萄糖胺-6-磷酸鹽轉換成葡萄糖胺-6-磷酸鹽,及/或無法將葡萄糖胺-6-磷酸鹽轉換成果糖-6-磷酸鹽。 74. 根據特定實施例56至73中任一項之細胞,其中該細胞經修飾以產生GDP-岩藻糖。 75. 根據特定實施例56至74中任一項之細胞,其中該細胞經修飾以促進GDP-岩藻糖產生,其中該修飾選擇自包含下列列舉之群組:UDP-葡萄糖:十一異戊二烯-磷酸葡萄糖-1-磷酸轉移酶編碼基因的剃除、GDP-L-岩藻糖合成酶編碼基因的過度表現、GDP-甘露糖4,6-脫水酶編碼基因的過度表現、甘露糖-1-磷酸鹽鳥苷酸轉移酶編碼基因的過度表現、磷酸甘露糖變位酶編碼基因的過度表現、或甘露糖-6-磷酸鹽異構酶編碼基因的過度表現。 76. 根據特定實施例56至75中任一項之細胞,其中該細胞經修飾以產生UDP-半乳糖。 77. 根據特定實施例56至76中任一項之細胞,其中該細胞經修飾以促進UDP-半乳糖產生,其中該修飾選擇自包含下列列舉之群組:5’-核苷酸酶/UDP-糖水解酶編碼基因的剃除或半乳糖-1-磷酸鹽尿苷醯轉移酶編碼基因的剃除。 78. 根據特定實施例56至75中任一項之細胞,其中該細胞經修飾以產生CMP-N-乙醯基神經胺酸。 79. 根據特定實施例56至78中任一項之細胞,其中該細胞經修飾以促進CMP-N-乙醯基神經胺酸產生,其中該修飾選擇自包含下列列舉之群組:CMP-唾液酸合成酶編碼基因的過度表現、唾液酸合成酶編碼基因的過度表現、N-乙醯基-D-葡萄糖胺2-表異構酶編碼基因的過度表現。 80. 根據特定實施例56至79中任一項之細胞,其中該細胞能夠表現至少一種其他醣基轉移酶,其中該其他醣基轉移酶選自包括下列之群組: 岩藻糖基轉移酶、唾液酸轉移酶、半乳糖基轉移酶、葡萄糖基轉移酶、甘露醣基轉移酶、N-乙醯基葡糖胺轉移酶、N-乙醯基半乳糖胺轉移酶、N-乙醯基甘露糖胺轉移酶、木醣基轉移酶、葡萄糖醛酸苷轉移酶、半乳醣醛酸轉移酶、葡萄糖胺轉移酶、N-乙醇醯神經胺轉移酶、鼠李糖基轉移酶、N-乙醯基鼠李糖基轉移酶、UDP-4-胺基-4,6-雙去氧-N-乙醯基-β-L-阿卓糖胺轉胺酶、UDP-N-乙醯葡萄糖胺烯醇丙酮基轉移酶和岩藻糖胺基轉移酶, - 較佳地,該岩藻糖基轉移酶選自包括下列列舉:α-1,2-岩藻糖基轉移酶、α-1,3-岩藻糖基轉移酶、α-1,4-岩藻糖基轉移酶及α-1,6-岩藻糖基轉移酶, - 較佳地,該唾液酸轉移酶選自包括下列列舉:α-2,3-唾液酸轉移酶、α-2,6-唾液酸轉移酶及α-2,8-唾液酸轉移酶, - 較佳地,該半乳糖基轉移酶選自包括下列列舉:β-1,3-半乳糖基轉移酶、N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶、β-1,4-半乳糖基轉移酶、N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶、α-1,3-半乳糖基轉移酶及α-1,4-半乳糖基轉移酶, - 較佳地,該葡萄糖基轉移酶選自包括下列列舉:α-葡萄糖基轉移酶、β-1,2-葡萄糖基轉移酶、β-1,3-葡萄糖基轉移酶及β-1,4-葡萄糖基轉移酶, - 較佳地,該甘露糖基轉移酶選自包括下列列舉:α-1,2-甘露糖基轉移酶、α-1,3-甘露糖基轉移酶及α-1,6-甘露糖基轉移酶, - 較佳地,該N-乙醯基葡糖胺轉移酶選自包括下列列舉:β-1,3-N-乙醯基葡糖胺轉移酶及β-1,6-N-乙醯基葡糖胺轉移酶, - 較佳地,該N-乙醯基半乳糖胺轉移酶為α-1,3-N-乙醯基半乳糖胺轉移酶。 81. 根據特定實施例80之細胞,其中該細胞在該其他醣基轉移酶的表現或活性方面被修飾。 82. 根據特定實施例56至81中任一項之細胞,其中該細胞使用用於產生該在還原端具有GlcNAc單元的雙醣或寡醣的一或多種前驅物,該前驅物從培養基供給該細胞。 83. 根據特定實施例56至82中任一項之細胞,其中該細胞產生一或多種前驅物,其用於產生該在還原端具有GlcNAc單元的雙醣或寡醣。 84. 根據特定實施例82或83中任一項之細胞,其中用於產生該雙醣或寡醣之前驅物完全轉化為還原端具有GlcNAc單元的雙醣或寡醣。 85. 根據特定實施例56至84中任一項之細胞,其中該細胞在細胞內產生還原端具有GlcNAc單元的雙醣或寡醣,且其中部分或實質上全部的所產生的還原端具有GlcNAc單元的雙醣或寡醣保留在細胞內及/或經由被動或主動運輸排出細胞外。 86. 根據特定實施例56至85中任一項之細胞,其中該細胞表現膜轉運蛋白或具有轉運活性的多肽,以轉運化合物穿過細胞壁的外膜, 較佳地,該細胞在該膜轉運蛋白或具有轉運活性的多肽的表現或活性方面被修飾。 87. 根據特定實施例86之細胞,其中該膜轉運蛋白或具有轉運活性的多肽選自包括下列列舉:運輸蛋白、P-P-鍵-水解-驅動的轉運體、β-桶狀孔蛋白、輔助轉運蛋白、推定轉運蛋白及磷酸轉移-驅動組轉位蛋白, 較佳地,該運輸蛋白包括MFS轉運體、糖排出轉運體及螯鐵蛋白輸出體, 較佳地,該P-P-鍵-水解-驅動的轉運體包括ABC轉運體及螯鐵蛋白輸出體。 88. 根據特定實施例86或87中任一項之細胞,其中該膜轉運蛋白或具有轉運活性的多肽控制該還原端具有GlcNAc單元的雙醣或寡醣及/或一或多種前驅物及/或接受者在細胞壁外膜上的流動,該一或多種前驅物及/或接受者用於產生該還原端具有GlcNAc單元的雙醣或寡醣。 89. 根據特定實施例86至88中任一項之細胞,其中該膜轉運蛋白或具有轉運活性的多肽提供該還原端具有GlcNAc單元的雙醣或寡醣的改善產生及/或允許排出及/或促進排出。 90. 根據特定實施例56至89中任一項之細胞,其中該細胞包括與未修飾的先驅細胞相比,用於降低乙酸鹽產生的修飾。 91. 根據特定實施例90之細胞,其中該細胞包括與未修飾的先驅細胞相比,任一或多種蛋白質的較低或減少的表現及/或消除、受損、降低或延遲的活性,該蛋白質包含:β-半乳糖苷酶、半乳糖苷O-乙醯轉移酶、N-乙醯葡萄糖胺-6-磷酸鹽去乙醯酶、葡萄糖胺-6-磷酸鹽脫胺酶、N-乙醯葡萄糖胺抑制蛋白、核糖核苷酸單磷酸酶、EIICBA-Nag、UDP-葡萄糖:十一異戊二烯-磷酸葡萄糖-1-磷酸轉移酶、L-岩藻酮糖激酶、L-岩藻糖異構酶、N-乙醯神經胺酸解離酶、N-乙醯甘露糖胺激酶、N-乙醯甘露糖胺-6-磷酸鹽2-表異構酶、EIIAB-Man、EIIC-Man、EIID-Man、ushA、半乳糖-1-磷酸鹽尿苷醯轉移酶、葡萄糖-1-磷酸鹽腺苷醯轉移酶、葡萄糖-1-磷酸酶、ATP-依賴性6-磷酸果糖激酶同功酶1、ATP-依賴性6-磷酸果糖激酶同功酶2、葡萄糖-6-磷酸鹽異構酶、有氧呼吸調控蛋白、轉錄抑制蛋白IclR、lon蛋白酶、葡萄糖特異性轉位磷酸轉移酶酶IIBC成分ptsG、葡萄糖特異性轉位磷酸轉移酶(PTS)酶IIBC成分malX、enzyme IIA Glc、β-葡萄糖苷特異性PTS酶II、果糖特異性PTS多磷醯轉移蛋白FruA及FruB、乙醇脫氫酶醛脫氫酶、丙酮酸-甲酸鹽解離酶、乙酸鹽激酶、磷醯基轉移酶、磷酸乙醯轉移酶、丙酮酸去羧酶。 92. 根據特定實施例56至91中任一項之細胞,其中細胞能夠產生磷酸烯醇丙酮酸(PEP)。 93. 根據特定實施例56至92中任一項之細胞,該細胞與未修飾的先驅細胞相比,具有用於磷酸烯醇丙酮酸(PEP)的促進產生及/或供應的修飾。 94. 根據特定實施例56至93中任一項之細胞,其中該細胞包含至少部分失活的所選單醣、雙醣或寡醣的分解代謝途徑,該單醣、雙醣或寡醣參與該還原端具有GlcNAc單元的雙醣或寡醣的產生及/或為產生該還原端具有GlcNAc單元的雙醣或寡醣所需。 95. 根據特定實施例56至94中任一項之細胞,其中當該細胞在乳糖與一或多種其他碳源結合的環境中生長時,該細胞抵抗乳糖殺傷現象。 96. 根據特定實施例56至95中任一項之細胞,其中該細胞在整個培養液及/或上清液產生90 g/L或多於90 g/L的該還原端具有GlcNAc的雙醣或寡醣、及/或其中在整個培養液及/或上清液中的該還原端具有GlcNAc的雙醣或寡醣具有至少80%的純度,其在整個培養液及/或上清液中分別以該還原端具有GlcNAc單元的雙醣或寡醣及其前驅物的總量計。 97. 根據特定實施例56至96中任一項之細胞,其中該細胞產生混合物,該混合物為包含至少一種還原端具有GlcNAc單元的雙醣或寡醣之帶電的,較佳為唾液酸化的雙醣及/或寡醣及/或中性的雙醣及/或寡醣。 98. 根據特定實施例56至97中任一項之細胞,其中該細胞產生混合物,該混合物為包含至少還原端具有GlcNAc單元的寡醣之帶電的,較佳為唾液酸化的寡醣及/或中性的寡醣。 99. 根據特定實施例56至98中任一項之細胞,其中該寡醣選自包括下列之列舉:2-岩藻糖基乳-N-雙糖、4-岩藻糖基乳-N-雙糖、2-4-二岩藻糖基乳-N-雙糖、3’-唾液酸乳-N-雙糖、6’-唾液酸乳-N-雙糖、3’,6’-二唾液酸乳-N-雙糖、6,6’-二唾液酸乳-N-雙糖、2’-岩藻糖基-3’-唾液酸乳-N-雙糖、2’-岩藻糖基-6’-唾液酸乳-N-雙糖、4-岩藻糖基-3’-唾液酸乳-N-雙糖、4-岩藻糖基-6’-唾液酸乳-N-雙糖、2-岩藻糖基N-乙醯乳糖胺、3’-岩藻糖基N-乙醯乳糖胺、2,3’-二岩藻糖基N-乙醯乳糖胺、3’-唾液酸N-乙醯乳糖胺、6’-唾液酸N-乙醯乳糖胺、3’,6’-二唾液酸N-乙醯乳糖胺、6,6’-二唾液酸N-乙醯乳糖胺、2’-岩藻糖基-3’-唾液酸N-乙醯乳糖胺、2’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、3-岩藻糖基-3’-唾液酸N-乙醯乳糖胺、3’-岩藻糖基-6’-唾液酸N-乙醯乳糖胺、P1三醣(Gal-a1,4-Gal-b1,4-GlcNAc)、異源移植抗原決定位(Gal-a1,3-Gal-b1,4-GlcNAc)、Gal-b14-(Galb13)-GlcNAc、聚-N-乙醯乳糖胺、GalNAc-b1,3-Gal-b1,4-GlcNAc。 100. 根據特定實施例56或58至99中任一項之細胞,其中該還原端具有GlcNAc單元的雙醣不包括幾丁二糖(GlcNAc-GlcNAc)。 101. 根據特定實施例56至100中任一項之細胞,其中該還原端具有GlcNAc單元的寡醣在還原端不包括幾丁二糖,較佳為不包括N-聚醣。 102. 根據特定實施例56至101中任一項之細胞或根據特定實施例1至55中任一項之方法,其中該細胞為細菌、真菌、酵母菌、植物細胞、動物細胞或原生動物細胞, - 較佳地,該細菌為大腸桿菌菌株,更佳為大腸桿菌菌株K12菌株,又更佳地,該大腸桿菌菌株K12菌株為大腸桿菌MG1655, - 較佳地,該真菌屬於選自包括黑黴菌屬、網柱黏菌屬、青黴菌屬、白黴菌屬或麴菌屬之群組的屬(genus), - 較佳地,該酵母菌屬於選自包括酵母屬、接合酵母菌屬、畢赤酵母菌屬、克馬格特勒酵母、漢遜氏酵母菌屬、子囊菌酵母屬、擬球酵母菌屬、克魯維酵母菌屬或德巴利酵母菌屬之群組的屬, - 較佳地,該植物細胞為藻細胞或衍生自煙草、苜蓿、稻米、番茄、棉花、油菜籽、大豆、玉米或穀類植物, - 較佳地,該動物細胞衍生自非人類哺乳動物、鳥類、魚類、無脊椎動物、爬蟲類、兩棲類或昆蟲類、或為衍生自排除胚胎幹細胞的人類細胞的基因改造細胞株,更佳地,該人類及非人類哺乳動物細胞為上皮細胞、胚胎腎細胞、纖維母細胞、COS細胞、中國倉鼠卵巢(CHO)細胞、鼠骨髓瘤細胞、NIH-3T3細胞、非乳腺成體幹細胞或其衍生物,更佳地,該昆蟲細胞衍生自秋行軍蟲、蠶、甘藍夜蛾、粉紋夜蛾或黑腹果蠅, - 較佳地,該原生動物細胞為狼蛛利什曼原蟲細胞。 103. 根據特定實施例102之細胞或根據特定實施例102之方法,其中該細胞為活的革蘭氏陰性菌,其包含與未修飾的先驅細胞相比,降低或消除聚-N-乙醯-葡萄糖胺(PNAG)、腸細菌共同抗原(ECA)、纖維素、可拉酸、核心寡醣、滲壓調節間質葡聚糖(OPG)、葡萄糖基甘油、聚醣及/或海藻糖的合成。 104. 根據特定實施例1至55、102或103中任一項之方法,其中該分離包括下列列舉的至少一種:澄清、超微過濾、奈米過濾、兩相分配、逆滲透、微過濾、活性炭或碳處理、非離子界面活性劑處理、酶消化、切向流高性能過濾、切向流超微過濾、親和層析、離子交換層析、疏水交互作用層析及/或凝膠過濾、配體交換層析。 105. 根據特定實施例1至55、102至104中任一項之方法,其更包括自該細胞純化該雙醣或寡醣。 106. 根據特定實施例1至55、102至105中任一項之方法,其中該純化包括下列步驟的至少一種:活性炭或碳的使用、炭的使用、奈米過濾、超微過濾、電泳、酶處理或離子交換、醇類的使用、含水的醇類混合物的使用、結晶、蒸發、沉澱、乾燥、噴霧乾燥、凍乾、噴霧冷凍乾燥、冷凍噴霧乾燥、帶式乾燥、傳送帶乾燥、真空帶式乾燥、真空傳送帶乾燥、轉筒乾燥、滾筒乾燥、真空轉筒乾燥或真空滾筒乾燥。 107. 一種根據特定實施例56至103中任一項之細胞或根據特定實施例1至55、102至106中任一項之方法用於產生還原端具有N-乙醯葡萄糖胺單元的雙醣或寡醣之用途。 108. 一種根據特定實施例56、58至103中任一項之細胞或根據特定實施例1、3至55、102至106中任一項之方法用於產生還原端具有N-乙醯葡萄糖胺單元的寡醣,較佳為用於產生還原端具有N-乙醯葡萄糖胺單元的帶電或中性寡醣,更佳為用於產生唾液酸化或岩藻糖基化形式的LNB或LacNAc之用途。 The present invention relates to the following preferred embodiments: 1. A method for producing a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end by a cell, the method comprising the steps of: a. providing a cell capable of ( i) synthesizing nucleotide-sugar, (ii) synthesizing N-acetylglucosamine, and (iii) saccharifying the N-acetylglucosamine monosaccharide, b. culturing under conditions that allow the production of the disaccharide or oligosaccharide The cells, c. isolate the desired disaccharide or oligosaccharide from the culture. 2. The method of embodiment 1, wherein the cell expresses at least one N-acetylglucosamine-6-phosphotransferase and phosphatase to synthesize the monosaccharide N-acetylglucosamine. 3. The method according to any one of embodiments 1 and 2, wherein the cell expresses at least one glycosyltransferase to glycosylate N-acetylglucosamine. 4. The method according to any one of embodiments 1 to 3, wherein the cell is genetically engineered to produce the disaccharide or oligosaccharide. 5. The method according to any one of embodiments 1 to 4, wherein the cell is modified in the expression or activity of an enzyme selected from the group comprising: N-acetylglucosamine-6-phosphotransferase , phosphatase, glycosyltransferase, L-glutamine-D-fructose-6-phosphate transaminase and UDP-glucose 4-epimerase. 6. The method according to any one of embodiments 1 to 5, wherein the nucleotide-sugar is selected from the group comprising: UDP-galactose (UDP-Gal), UDP-N-acetylglucosamine (UDP -GlcNAc), UDP-N-acetylgalactosamine (UDP-GalNAc), UDP-N-acetylmannosamine (UDP-ManNAc), GDP-fucose (GDP-Fuc), GDP-mannose ( GDP-Man), UDP-glucose (UDP-Glc), CMP-N-acetylneuraminic acid (CMP-Neu5Ac), CMP-N-glycolylneuraminic acid (CMP-Neu5Gc), UDP-glucuronic acid Salt, UDP-galacturonate, GDP-rhamnose, and UDP-xylose. 7. The method according to any one of embodiments 1 to 6, wherein the nucleotide-sugar is UDP-galactose, and the glycosyltransferase is N-acetylglucosamine b-1,3-galactosyl transferase or N-acetylglucosamine b-1,4-galactosyltransferase. 8. The method according to any one of embodiments 1 to 7, wherein the disaccharide is lacto-N-disaccharide (Gal-b1,3-GlcNAc) or N-acetyllactosamine (Gal-b1,4-GlcNAc) ), or the oligosaccharide has lacto-N-disaccharide (Gal-b1,3-GlcNAc) or N-acetyllactosamine (Gal-b1,4-GlcNAc) at the reducing end. 9. The method according to any one of embodiments 1 to 8, wherein the N-acetylglucosamine b-1,3-galactosyltransferase is a glycosyltransferase having: a. PFAM domain PF00535, and i) comprising the sequence of SEQ ID NO 01 [AGPS]XXLN(X n )RXDXD, wherein X is any amino acid, wherein n is 12 to 17, or ii) comprising the sequence of SEQ ID NO 02 PXXLN(X n )RXDXD (X m )[FWY]XX[HKR]XX[NQST], wherein X is any amino acid, wherein n is 12 to 17 and m is 100 to 115, or iii) including according to SEQ ID NOs: 03, 04, A polypeptide sequence of any of 05, 06, 07 or 08, or iv) a functional homologue, variant or derivative of any of SEQ ID NO: 03, 04, 05, 06, 07 or 08 , which has at least 80% of the overall sequence of the full length of the N-acetylglucosamine b-1,3-galactosyltransferase polypeptide of any of SEQ ID NOs: 03, 04, 05, 06, 07 or 08 is identical and has N-acetylglucosamine b-1,3-galactosyltransferase activity, or v) comprises at least 8 from any of SEQ ID NOs: 03, 04, 05, 06, 07 or 08 , 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 oligopeptide sequences of consecutive amino acid residues with N-acetylglucosamine b-1,3- Galactosyltransferase activity, or b. PFAM domain IPR002659, and i) comprising the sequence of SEQ ID NO 09 KT( Xn )[FY]XXKXDXD( Xm )[FHY]XXG(X, no A, G, S )(X p )X (no F, H, W, Y) [DE]D[ILV]XX[AG], wherein X is any amino acid, wherein n is 13 to 16, m is 35 to 70, and p is 20 to 45, or ii) comprises a polypeptide sequence according to any of SEQ ID NOs: 10, 11, 12 or 13, or iii) is any of SEQ ID NOs: 10, 11, 12 or 13 A functional homologue, variant or derivative having any of the N-acetylglucosamine b-1,3-galactosyltransferase polypeptides of SEQ ID NO: 10, 11, 12 or 13 At least 80% overall sequence identity of full length and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or iv) comprising from any of SEQ ID NOs: 10, 11, 12 or 13 of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 2 Oligopeptide sequence of 0 consecutive amino acid residues with N-acetylglucosamine b-1,3-galactosyltransferase activity. 10. The method according to any one of embodiments 1 to 8, wherein the N-acetylglucosamine b-1,4-galactosyltransferase is a glycosyltransferase having: a. PFAM domain PF01755, and i) comprising the sequence EXXCXXSHXX[ILV][FWY]( Xn )EDD( Xm )[ACGST]XXYX[ILMV] of SEQ ID NO 14, wherein X is any amino acid, wherein n is 13 to 15 and m is 50 to 76, or ii) comprising a polypeptide sequence according to any of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22 or 23, or iii) being SEQ ID NOs: 15, 16, A functional homologue, variant or derivative of any of 17, 18, 19, 20, 21, 22 or 23 having the same The N-acetylglucosamine b-1,4-galactosyltransferase polypeptide full-length of any one of 22 or 23 has at least 80% overall sequence identity and has N-acetylglucosamine b-1,4 - galactosyltransferase activity, or iv) comprising at least 8, 9, 10, 11, 12, Oligopeptide sequences of 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues, and N-acetylglucosamine b-1,4-galactosyltransferase activity, or b. PFAM domain PF00535, and i) comprising the sequence of SEQ ID NO 24 R[KN]XXXXXXXGXXXX[FL]XDXD( Xn )[FHW]XXX[FHNY]( Xm )E[DE], where X is any amino acid , wherein n is 50 to 75 and m is 10 to 30, or ii) the sequence comprising SEQ ID NO 25 R[KN]XXXXXXXGXXXXFXDXD( Xn )[FHW]XXX[FHNY]( Xm )E[DE](X p ) [FWY]XX[HKR]XX[NQST], wherein X is any amino acid, wherein n is 50 to 75, m is 10 to 30, and p is 20 to 25, or iii) including according to SEQ ID NO : the polypeptide sequence of any one of 26, 27 or 28, or iv) is a functional homologue, variant or derivative of any one of SEQ ID NO: 26, 27 or 28 having the same : at least 80% overall sequence identity of any of the full-length N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of 26, 27 or 28 and having N-acetylglucosamine b-1 ,4-galactosyltransferase activity, or v) comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acids from any of SEQ ID NOs: 26, 27 or 28 oligopeptide sequence of residues with N-acetylglucosamine b-1,4-galactosyltransferase activity, or c. PFAM domain PF02709 and no PFAM domain PF00535, and i) comprising SEQ ID NO 29 the sequence [FWY]XX[FY][FWY]( X23 )[FWY][GQ]X[DE]D, where X is any amino acid, or ii) the sequence [PV]W[ GHNP]( Xn )[FWY][GQ]X[DE]D, wherein X is any amino acid, wherein n is 21 to 24, or iii) including according to SEQ ID NOs: 31, 32, 33, 34, The polypeptide sequence of any of 35 or 36, or iv) is a functional homologue, variant or derivative of any of SEQ ID NO: 31, 32, 33, 34, 35 or 36, which has a Any of the N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of SEQ ID NO: 31, 32, 33, 34, 35 or 36 have at least 80% overall sequence identity over the full length and have N-acetylglucosamine b-1,4-galactosyltransferase activity, or v) comprising at least 8, 9, 10 from any of SEQ ID NOs: 31, 32, 33, 34, 35, or 36 , 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 oligopeptide sequences of consecutive amino acid residues with N-acetylglucosamine b-1,4-galactosylation Enzymatic activity, or d. PFAM domain PF03808, and i) comprising the sequence of SEQ ID NO 37 [ST][FHY]XN( Xn )DG(X16)[HKR]X[ST] FDXX [ST]XA, wherein X is any amino acid and wherein n is 20 to 25, or ii) the sequence comprising SEQ ID NO 38 [ST][FHY]XN( Xn )DG(X16)[HKR]X[ST] FDXX [ ST]XA(X m )[HR]XG[FWY](X p )GXGXXXQ[DE], where X is any amino acid, where n is 20 to 25, m is 40 to 50, and p is 22 to 30 , or iii) comprising a polypeptide sequence according to any of SEQ ID NO: 39, 40 or 41, or iv) being a functional homologue, variant or Derivatives having the N with SEQ ID NO: 39, 40 or 41 - At least 80% overall sequence identity of any of the full-length acetylglucosamine b-1,4-galactosyltransferase polypeptides and having N-acetylglucosamine b-1,4-galactosyltransferase activity , or v) comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amine groups from any of SEQ ID NOs: 39, 40, or 41 Oligopeptide sequence of acid residues with N-acetylglucosamine b-1,4-galactosyltransferase activity. 11. The method according to any one of the preceding embodiments, wherein a. the N-acetylglucosamine-6-phosphotransferase is a polypeptide sequence comprising the polypeptide of UniProt ID P43577, or is the functionality of the polypeptide of UniProt ID P43577 A homologue, variant or derivative having at least 80% overall sequence identity with the full-length polypeptide of UniProt ID P43577 and having N-acetylglucosamine-6-phosphotransferase activity, and b. the L- Glutamine-D-fructose-6-phosphate transaminase is a polypeptide sequence comprising the polypeptide of UniProt ID P17169, or is a functional homologue, variant or derivative of the polypeptide having UniProt ID P17169, which has the same At least 80% overall sequence identity to the full length of the polypeptide of ID P17169 and having L-glutamine-D-fructose-6-phosphate transaminase activity; or being mutated A39T, R250C and G472S different from the UniProt ID P17169 polypeptide Retouched version. 12. The method according to any one of the preceding embodiments, wherein the cell can metabolize a carbon source selected from the group comprising the following enumeration: glucose, fructose, galactose, lactose, sucrose, maltose, malto-oligosaccharide, Maltotriose, sorbitol, xylose, rhamnose, mannose, methanol, ethanol, arabinose, trehalose, starch, cellulose, hemicellulose, molasses, corn infusion, high fructose syrup, glycerin, acetic acid Salt, citrate, lactic acid, pyruvic acid. 13. The method according to any one of the preceding embodiments, wherein the cell is unable to convert N-acetylglucosamine-6-phosphate to glucosamine-6-phosphate, and/or is unable to convert glucosamine-6-phosphate Salt is converted to fructose-6-phosphate. 14. The method according to any one of the preceding embodiments, wherein the cell is modified to produce GDP-fucose. 15. The method according to any one of the preceding embodiments, wherein the cell is modified to promote GDP-fucose production, wherein the modification is selected from the group comprising the following enumeration: UDP-glucose:undec isoprene- Shaving of the gene encoding phosphoglucose-1-phosphotransferase, overexpression of the gene encoding GDP-L-fucose synthase, overexpression of the gene encoding GDP-mannose 4,6-dehydratase, mannose-1- Overexpression of a gene encoding phosphoguanylate, overexpression of a gene encoding phosphomannose mutase, or overexpression of a gene encoding mannose-6-phosphate isomerase. 16. The method according to any one of the preceding embodiments, wherein the cell is modified to produce UDP-galactose. 17. The method according to any one of the preceding embodiments, wherein the cell is modified to promote UDP-galactose production, wherein the modification is selected from the group comprising the following enumeration: 5'-nucleotidase/UDP-sugar hydrolysis Shaving of the gene encoding the enzyme or shaving of the gene encoding the galactose-1-phosphate uridine transferase. 18. The method according to any one of the preceding embodiments, wherein the cell is modified to produce CMP-N-acetylneuraminic acid. 19. The method according to any one of the preceding embodiments, wherein the cell is modified to promote CMP-N-acetylneuraminic acid production, wherein the modification is selected from the group comprising the following enumeration: CMP-sialic acid synthase Overexpression of encoding gene, overexpression of gene encoding sialic acid synthase, overexpression of gene encoding N-acetyl-D-glucosamine 2-epimerase. 20. The method according to any one of the preceding embodiments, wherein the cell is capable of expressing at least one other glycosyltransferase, and wherein the other glycosyltransferase is selected from the group comprising: fucosyltransferase, saliva Acid transferase, Galactosyltransferase, Glucosyltransferase, Mannosyltransferase, N-Acetylglucosaminyltransferase, N-Acetylgalactosyltransferase, N-Acetylmannose Aminyltransferase, xylosyltransferase, glucuronidyltransferase, galacturonyltransferase, glucosamine transferase, N-glycolyl neuraminidase, rhamnosyltransferases. 21. The method of embodiment 20, wherein the cell is modified in the expression or activity of the other glycosyltransferase. 22. The method according to any one of the preceding embodiments, wherein the oligosaccharide is selected from the list comprising: 2-fucosyl lacto-N-disaccharide, 4-fucosyl lacto-N-disaccharide, 2-4-Difucosyllacto-N-disaccharide, 3'-Sialylolide-N-disaccharide, 6'-Sialylolide-N-disaccharide, 3',6'-disialolactoide -N-disaccharide, 6,6'-disialo-N-disaccharide, 2'-fucosyl-3'-sialo-N-disaccharide, 2'-fucosyl-6 '-Sialyllacto-N-disaccharide, 4-fucosyl-3'-sialylacto-N-disaccharide, 4-fucosyl-6'-sialylacto-N-disaccharide, 2 - Fucosyl N-acetyllactosamine, 3'-fucosyl N-acetyllactosamine, 2,3'-difucosyl N-acetyllactosamine, 3'-sialic acid N- Acetylactosamine, 6'-Sialyl-N-Acetyl-Lactosamine, 3',6'-Disialo-N-Acetyl-Lactosamine, 6,6'-Disialo-N-Acetyl-Lactosamine, 2' - Fucosyl-3'-sialo-N-acetyllactosamine, 2'-fucosyl-6'-sialo-N-acetyllactosamine, 3-fucosyl-3'-sialic acid N-acetyllactosamine, 3'-fucosyl-6'-sialic acid N-acetyllactosamine, P1 trisaccharide (Gal-a1,4-Gal-b1,4-GlcNAc), allograft antigen Epitope (Gal-a1,3-Gal-b1,4-GlcNAc), Gal-b14-(Galb13)-GlcNAc, poly-N-acetyllactosamine, GalNAc-b1,3-Gal-b1,4-GlcNAc . 23. A metabolically engineered cell capable of (i) synthesizing a nucleotide-sugar, (ii) synthesizing N-acetylglucosamine, and (iii) glycating the N-acetylglucosamine monosaccharide, wherein the cell produces a reduced A disaccharide or oligosaccharide with an N-acetylglucosamine unit at the end. 24. The cell according to embodiment 23, wherein the cell expresses at least one N-acetylglucosamine-6-phosphotransferase and phosphatase to synthesize N-acetylglucosamine. 25. The cell according to any one of embodiments 23 and 24, wherein the cell expresses at least one glycosyltransferase to glycosylate N-acetylglucosamine. 26. The cell according to any one of embodiments 23 to 25, wherein the cell is modified in the expression or activity of an enzyme selected from the group consisting of: N-acetylglucosamine-6-phosphotransferase, phosphoric acid Enzymes, glycosyltransferases, L-glutamine-D-fructose-6-phosphate transaminase and UDP-glucose 4-epimerase. 27. The cell according to any one of embodiments 23 to 26, wherein the nucleotide-sugar is selected from the group comprising: UDP-galactose (UDP-Gal), UDP-N-acetylglucosamine (UDP -GlcNAc), UDP-N-acetylgalactosamine (UDP-GalNAc), UDP-N-acetylmannosamine (UDP-ManNAc), GDP-fucose (GDP-Fuc), GDP-mannose ( GDP-Man), UDP-glucose (UDP-Glc), CMP-N-acetylneuraminic acid (CMP-Neu5Ac), CMP-N-glycolylneuraminic acid (CMP-Neu5Gc), UDP-glucuronic acid Salt, UDP-galacturonate, GDP-rhamnose, and UDP-xylose. 28. The cell according to any one of embodiments 23 to 27, wherein the nucleotide-sugar is UDP-galactose, and the glycosyltransferase is N-acetylglucosamine b-1,3-galactosyl transferase or N-acetylglucosamine b-1,4-galactosyltransferase. 29. The cell according to any one of embodiments 23 to 28, wherein the disaccharide is lacto-N-disaccharide (Gal-b1,3-GlcNAc) or N-acetyllactosamine (Gal-b1,4-GlcNAc) ), or wherein the oligosaccharide has lacto-N-disaccharide (Gal-b1,3-GlcNAc) or N-acetyllactosamine (Gal-b1,4-GlcNAc) at the reducing end. 30. The cell according to any one of embodiments 23 to 29, wherein the N-acetylglucosamine b-1,3-galactosyltransferase is a glycosyltransferase having: a. PFAM domain PF00535, and i) comprising the sequence of SEQ ID NO 01 [AGPS]XXLN(X n )RXDXD, wherein X is any amino acid, wherein n is 12 to 17, or ii) comprising the sequence of SEQ ID NO 02 PXXLN(X n )RXDXD (X m )[FWY]XX[HKR]XX[NQST], wherein X is any amino acid, wherein n is 12 to 17 and m is 100 to 115, or iii) including according to SEQ ID NOs: 03, 04, A polypeptide sequence of any of 05, 06, 07 or 08, or iv) a functional homologue, variant or derivative of any of SEQ ID NO: 03, 04, 05, 06, 07 or 08 , which has at least 80% of the overall sequence of the full length of the N-acetylglucosamine b-1,3-galactosyltransferase polypeptide of any of SEQ ID NOs: 03, 04, 05, 06, 07 or 08 is identical and has N-acetylglucosamine b-1,3-galactosyltransferase activity, or v) comprises at least 8 from any of SEQ ID NOs: 03, 04, 05, 06, 07 or 08 , 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 oligopeptide sequences of consecutive amino acid residues with N-acetylglucosamine b-1,3- Galactosyltransferase activity, or b. PFAM domain IPR002659, and i) comprising the sequence of SEQ ID NO 09 KT( Xn )[FY]XXKXDXD( Xm )[FHY]XXG(X, no A, G, S )(X p )X (no F, H, W, Y) [DE]D[ILV]XX[AG], wherein X is any amino acid, wherein n is 13 to 16, m is 35 to 70, and p is 20 to 45, or ii) comprises a polypeptide sequence according to any of SEQ ID NOs: 10, 11, 12 or 13, or iii) is any of SEQ ID NOs: 10, 11, 12 or 13 A functional homologue, variant or derivative having any of the N-acetylglucosamine b-1,3-galactosyltransferase polypeptides of SEQ ID NO: 10, 11, 12 or 13 At least 80% overall sequence identity of full length and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or iv) comprising from any of SEQ ID NOs: 10, 11, 12 or 13 of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 An oligopeptide sequence of consecutive amino acid residues with N-acetylglucosamine b-1,3-galactosyltransferase activity. 31. The cell according to any one of embodiments 23 to 29, wherein the N-acetylglucosamine b-1,4-galactosyltransferase is a glycosyltransferase having: a. PFAM domain PF01755, and i) comprising the sequence EXXCXXSHXX[ILV][FWY]( Xn )EDD( Xm )[ACGST]XXYX[ILMV] of SEQ ID NO 14, wherein X is any amino acid, wherein n is 13 to 15 and m is 50 to 76, or ii) comprising a polypeptide sequence according to any of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22 or 23, or iii) being SEQ ID NOs: 15, 16, A functional homologue, variant or derivative of any of 17, 18, 19, 20, 21, 22 or 23 having the same The N-acetylglucosamine b-1,4-galactosyltransferase polypeptide full-length of any one of 22 or 23 has at least 80% overall sequence identity and has N-acetylglucosamine b-1,4 - galactosyltransferase activity, or iv) comprising at least 8, 9, 10, 11, 12, Oligopeptide sequences of 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b-1,4-galactosyltransferase activity, or b . PFAM domain PF00535 and i) comprising the sequence of SEQ ID NO 24 R[KN]XXXXXXXGXXXX[FL]XDXD( Xn )[FHW]XXX[FHNY]( Xm )E[DE], wherein X is any amine group acid, wherein n is 50 to 75 and m is 10 to 30, or ii) comprising the sequence of SEQ ID NO 25 R[KN]XXXXXXXXGXXXXFXDXD( Xn )[FHW]XXX[FHNY]( Xm )E[DE]( X p ) [FWY]XX[HKR]XX[NQST], wherein X is any amino acid, wherein n is 50 to 75, m is 10 to 30, and p is 20 to 25, or iii) including according to SEQ ID The polypeptide sequence of any of NO: 26, 27 or 28, or iv) is a functional homologue, variant or derivative of any of SEQ ID NO: 26, 27 or 28 having the same At least 80% overall sequence identity of any of the full-length N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of NO: 26, 27 or 28 and having N-acetylglucosamine b -1,4-Galactosyltransferase Transferase activity, or v) comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 from any of SEQ ID NOs: 26, 27, or 28 Oligopeptide sequences of consecutive amino acid residues with N-acetylglucosamine b-1,4-galactosyltransferase activity, or c. PFAM domain PF02709 and no PFAM domain PF00535, and i) include SEQ The sequence of ID NO 29 [FWY]XX[FY][FWY]( X23 )[FWY][GQ]X[DE]D, where X is any amino acid, or ii) the sequence comprising SEQ ID NO 30 [ PV]W[GHNP]( Xn )[FWY][GQ]X[DE]D, wherein X is any amino acid, wherein n is 21 to 24, or iii) including according to SEQ ID NO: 31, 32, A polypeptide sequence of any of 33, 34, 35 or 36, or iv) a functional homologue, variant or derivative of any of SEQ ID NO: 31, 32, 33, 34, 35 or 36 , which has at least 80% of the overall sequence of any of the full-length N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of SEQ ID NO: 31, 32, 33, 34, 35 or 36 is identical and has N-acetylglucosamine b-1,4-galactosyltransferase activity, or v) comprises at least 8 from any of SEQ ID NOs: 31, 32, 33, 34, 35 or 36 , 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 oligopeptide sequences of consecutive amino acid residues with N-acetylglucosamine b-1,4- Galactosyltransferase activity, or d. PFAM domain PF03808, and i) comprising the sequence of SEQ ID NO 37 [ST][FHY]XN( Xn )DG(X16)[HKR]X[ST] FDXX [ST ]XA, wherein X is any amino acid, and wherein n is 20 to 25, or ii) comprising the sequence of SEQ ID NO 38 [ST][FHY]XN( Xn )DG( X16 )[HKR]X[ ST]FDXX[ST]XA(X m )[HR]XG[FWY](X p )GXGXXXQ[DE], where X is any amino acid, where n is 20 to 25, m is 40 to 50, and p is 22 to 30, or iii) comprises a polypeptide sequence according to any of SEQ ID NO: 39, 40 or 41, or iv) is a functional homologue of any of SEQ ID NO: 39, 40 or 41 , variant or derivative having the same as SEQ ID NO: 39, 40 or Any one of the full-length N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of 41 has at least 80% overall sequence identity and has N-acetylglucosamine b-1,4-galactose basotransferase activity, or v) comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 from any of SEQ ID NOs: 39, 40, or 41 An oligopeptide sequence of consecutive amino acid residues with N-acetylglucosamine b-1,4-galactosyltransferase activity. 32. The cell according to any one of embodiments 23 to 31, wherein a. the N-acetylglucosamine-6-phosphotransferase is a polypeptide sequence comprising the polypeptide of UniProt ID P43577, or is a polypeptide of UniProt ID P43577 A functional homologue, variant or derivative having at least 80% overall sequence identity with the full-length polypeptide of UniProt ID P43577 and having N-acetylglucosamine-6-phosphotransferase activity, and b. the L-glutamine-D-fructose-6-phosphate transaminase is a polypeptide sequence comprising the polypeptide of UniProt ID P17169, or is a functional homologue, variant or derivative of the polypeptide having UniProt ID P17169, which has At least 80% overall sequence identity with the full-length polypeptide of UniProt ID P17169, and has L-glutamine-D-fructose-6-phosphate transaminase activity; or A39T, R250C and G472S different from the UniProt ID P17169 polypeptide Modified version of mutation. 33. The cell according to any one of embodiments 23 to 32, wherein the cell can metabolize a carbon source selected from the group comprising the following enumeration: glucose, fructose, galactose, lactose, sucrose, maltose, malt-oligo- Sugar, maltotriose, sorbitol, xylose, rhamnose, mannose, methanol, ethanol, arabinose, trehalose, starch, cellulose, hemicellulose, molasses, corn infusion, high fructose syrup, glycerin , acetate, citrate, lactic acid, pyruvic acid. 34. The cell according to any one of embodiments 23 to 33, wherein the cell is unable to convert N-acetylglucosamine-6-phosphate into glucosamine-6-phosphate, and/or is unable to convert glucosamine-6 - Phosphate conversion to fructose-6-phosphate. 35. The cell according to any one of embodiments 23 to 34, wherein the cell is modified to produce GDP-fucose. 36. The cell according to any one of embodiments 23 to 35, wherein the cell is modified to promote GDP-fucose production, wherein the modification is selected from the group comprising the following enumeration: UDP-glucose: undecylisoprene Shaving of the gene encoding ene-phosphoglucose-1-phosphotransferase, overexpression of the gene encoding GDP-L-fucose synthase, overexpression of the gene encoding GDP-mannose 4,6-dehydratase, mannose- Overexpression of a gene encoding 1-phosphate guanylate transferase, overexpression of a gene encoding phosphomannose mutase, or overexpression of a gene encoding mannose-6-phosphate isomerase. 37. The cell according to any one of embodiments 23 to 36, wherein the cell is modified to produce UDP-galactose. 38. The cell according to any one of embodiments 23 to 37, wherein the cell is modified to promote UDP-galactose production, wherein the modification is selected from the group comprising the following enumeration: 5'-nucleotidase/UDP- Shaving of the gene encoding glycohydrolase or shaving of the gene encoding galactose-1-phosphate uridine transferase. 39. The cell according to any one of embodiments 23 to 38, wherein the cell is modified to produce CMP-N-acetylneuraminic acid. 40. The cell according to any one of embodiments 23 to 39, wherein the cell is modified to promote CMP-N-acetylneuraminic acid production, wherein the modification is selected from the group comprising the following enumeration: CMP-sialic acid Overexpression of the gene encoding synthetase, overexpression of the gene encoding sialic acid synthase, overexpression of the gene encoding N-acetyl-D-glucosamine 2-epimerase. 41. The cell according to any one of embodiments 23 to 40, wherein the cell is capable of expressing at least one other glycosyltransferase, and wherein the other glycosyltransferase is selected from the group comprising: a fucosyltransferase , Sialyltransferase, Galactosyltransferase, Glucosyltransferase, Mannosyltransferase, N-Acetylglucosaminetransferase, N-Acetylgalactosyltransferase, N-Acetyl Mannosaminotransferase, xylosyltransferase, glucuronyltransferase, galacturonyltransferase, glucosamine transferase, N-glycolyl neuraminotransferase, rhamnosyltransferase. 42. The cell according to embodiment 41, wherein the cell is modified in the expression or activity of the other glycosyltransferase. 43. The cell according to any one of embodiments 23 to 41, wherein the oligosaccharide is selected from the list comprising: 2-fucosyllacto-N-disaccharide, 4-fucosyllacto-N-bisaccharide Sugar, 2-4-Difucosyllacto-N-disaccharide, 3'-Sialyllacto-N-disaccharide, 6'-Sialyllacto-N-disaccharide, 3',6'-Disialo Yogurt-N-disaccharide, 6,6'-disialo-N-disaccharide, 2'-fucosyl-3'-sialoglyco-N-disaccharide, 2'-fucosyl -6'-Sialylacto-N-disaccharide, 4-fucosyl-3'-sialylo-N-disaccharide, 4-fucosyl-6'-sialylo-N-disaccharide , 2-fucosyl N-acetyllactosamine, 3'-fucosyl N-acetyllactosamine, 2,3'-difucosyl N-acetyllactosamine, 3'-sialic acid N-acetyllactosamine, 6'-sialo-N-acetyllactosamine, 3',6'-disialo-N-acetyllactosamine, 6,6'-disialo-N-acetyllactosamine, 2'-fucosyl-3'-sialo-N-acetyllactosamine, 2'-fucosyl-6'-sialo-N-acetyllactosamine, 3-fucosyl-3'- Sialyl N-acetyllactosamine, 3'-fucosyl-6'-sialic acid N-acetyllactosamine, P1 trisaccharide (Gal-a1,4-Gal-b1,4-GlcNAc), heterologous Graft epitopes (Gal-a1,3-Gal-b1,4-GlcNAc), Gal-b14-(Galb13)-GlcNAc, poly-N-acetyllactosamine, GalNAc-b1,3-Gal-b1,4 -GlcNAc. 44. The cell according to any one of embodiments 23 to 43 or the method according to any one of embodiments 1 to 22, wherein the cell is selected from the group consisting of a microorganism, a plant or an animal cell, preferably the Microorganisms are bacteria, fungi or yeasts, preferably, the plants are cotton, rapeseed, soybean, corn or cereal plants, preferably, the animals are insects, fish, birds or non-human mammals; preferably, The cells are E. coli cells. 45. The cell according to any one of embodiments 23 to 44 or the method according to any one of embodiments 1 to 22 or 44, wherein the cell is a bacterial cell, preferably an Escherichia coli strain, more preferably an Escherichia coli strain K12 strain, more preferably, the E. coli strain K12 strain is E. coli MG1655. 46. The cell according to any one of embodiments 23 to 45 or the method according to any one of embodiments 1 to 22, 44 or 45, wherein the cell is a yeast cell. 47. The method according to any one of embodiments 1 to 22, 44 to 46, wherein the separation comprises at least one of clarification, ultrafiltration, nanofiltration, reverse osmosis, microfiltration, activated carbon or carbon treatment, Tangential flow high performance filtration, tangential flow ultrafiltration, affinity chromatography, ion exchange chromatography, hydrophobic interaction chromatography and/or gel filtration, ligand exchange chromatography. 48. The method of any one of embodiments 1 to 22, 44 to 47, further comprising purifying the disaccharide or oligosaccharide from the cell. 49. The method according to any one of embodiments 1 to 22, 44 to 48, wherein the purification comprises at least one of the following steps: use of activated carbon or carbon, use of carbon, nanofiltration, ultrafiltration or ion exchange, Use of alcohols, use of aqueous alcohol mixtures, crystallization, evaporation, precipitation, drying, spray drying or lyophilization. 50. A cell according to any one of embodiments 23 to 46 for producing a disaccharide or oligosaccharide having an N-acetylglucosamine unit at the reducing end, preferably for producing LNB or LacNAc, more preferably for producing Use to produce sialylated or fucosylated forms of LNB or LacNAc. In addition, the present invention relates to the following preferred specific embodiments: 1. A method for producing an oligosaccharide or a disaccharide having an N-acetylglucosamine unit at the reducing end by a cell, preferably a single cell, the method comprising the following steps: a. Provide cells capable of: (i) synthesizing the nucleotide-sugar and monosaccharide N-acetylglucosamine (GlcNAc), and (ii) expressing a glycosyltransferase to saccharify the GlcNAc monosaccharide to produce the GlcNAc monosaccharide A disaccharide or oligosaccharide, b. culturing the cell under conditions permitting production of the disaccharide or oligosaccharide, c. preferably, isolating the disaccharide or oligosaccharide from the culture. 2. A method for producing oligosaccharides with N-acetylglucosamine units at the reducing end by cells, the method comprising the steps of: a. providing cells capable of: (i) synthesizing nucleotide-sugars and monosaccharides N-acetylglucosamine (GlcNAc), and (ii) expressing a glycosyltransferase to saccharify the GlcNAc monosaccharide to produce the oligosaccharide, b. culturing the cell under conditions that allow the production of the oligosaccharide, c. comparing Preferably, the oligosaccharide is isolated from the culture. 3. A method by cells for producing a mixture comprising: (i) a disaccharide and/or oligosaccharide having an N-acetylglucosamine unit at the reducing end, and (ii) one or more lactose-based lactose Animal milk oligosaccharides (MMOs), the method comprising the steps of: a. providing cells capable of: (i) synthesizing nucleotide-sugar and monosaccharide N-acetylglucosamine (GlcNAc), and (ii) expressing Glycosyltransferase to glycosylate the GlcNAc monosaccharide to produce disaccharides and/or oligosaccharides having N-acetylglucosamine units at the reducing end, b. culturing the cells under conditions that allow the mixture to be produced, c. comparing Preferably, the mixture is isolated from the culture. 4. The method of any of the above specific embodiments, wherein the cell expresses at least one N-acetylglucosamine-6-phosphotransferase and phosphatase to synthesize the monosaccharide N-acetylglucosamine. 5. The method according to any one of the above specific embodiments, wherein the cell expresses at least one glycosyltransferase to glycosylate N-acetylglucosamine. 6. The method according to any of the above specific embodiments, wherein the cell is genetically modified to produce the disaccharide or oligosaccharide. 7. The method of specific embodiment 6, wherein the cell is modified with one or more gene expression modules, characterized in that the expression of any of the expression modules is constitutive or produced by a natural inducer. 8. The method according to any one of specific embodiments 6 or 7, wherein the cell comprises multiple copies of the same coding DNA sequence encoding a protein. 9. The method according to any one of the above specific embodiments, wherein the cell is modified in the expression or activity of an enzyme selected from the group consisting of: N-acetylglucosamine-6-phosphotransferase, phosphatase , Glycosyltransferase, L-glutamine-D-fructose-6-phosphate transaminase and UDP-glucose 4-epimerase. 10. The method according to any one of the above specific embodiments, wherein the nucleotide-sugar is selected from the group comprising: UDP-galactose (UDP-Gal), UDP-N-acetylglucosamine (UDP- GlcNAc), UDP-N-acetylgalactosamine (UDP-GalNAc), UDP-N-acetylmannosamine (UDP-ManNAc), GDP-fucose (GDP-Fuc), GDP-mannose (GDP -Man), UDP-glucose (UDP-Glc), UDP-2-acetamido-2,6-dideoxy--L arabino-4-hexulose, UDP-2-acetamido-2 ,6-dideoxy--L-lyxo-4-hexulose, UDP-N-acetyl-L-rhamnosamine (UDP-L-RhaNAc or UDP-2-acetylamino-2 , 6-dideoxy-L-mannose), dTDP-N-acetylfucosamine, UDP-N-acetylfucosamine (UDP-L-FucNAc or UDP-2-acetamido- 2,6-dideoxy-L-galactose), UDP-N-acetyl-L-pneumolysamine (UDP-L-PneNAC or UDP-2-acetamido-2,6-dideoxy -L-Talose), UDP-N-Acetylmuramic acid, UDP-N-Acetyl-L-Quinosamine (UDP-L-QuiNAc or UDP-2-Acetylamino-2, 6-dideoxy-L-glucose), GDP-L-isorhamnose, CMP-N-acetylneuraminic acid (CMP-Neu5Ac), CMP-N-glycolylneuraminic acid (CMP-Neu5Gc) , CMP-Neu4Ac, CMP-Neu5Ac9N 3 , CMP-Neu4,5Ac 2 , CMP-Neu5,7Ac 2 , CMP-Neu5,9Ac 2 , CMP-Neu5,7(8,9)Ac 2 , UDP-glucuronide , UDP-galacturonate, GDP-rhamnose and UDP-xylose. 11. The method according to any one of the above specific embodiments, wherein the nucleotide-sugar is UDP-galactose and the glycosyltransferase is N-acetylglucosamine b-1,3-galactosyltransferase enzyme or N-acetylglucosamine b-1,4-galactosyltransferase. 12. The method according to any of the above specific embodiments, wherein the oligosaccharide has lacto-N-disaccharide (Gal-b1,3-GlcNAc) or N-acetyllactosamine (Gal-b1,4) at the reducing end -GlcNAc). 13. The method according to any one of the above specific embodiments, wherein the N-acetylglucosamine b-1,3-galactosyltransferase is a glycosyltransferase having: a. PFAM domain PF00535, and i . comprising the sequence of SEQ ID NO 01 [AGPS]XXLN(X n )RXDXD, wherein X is any amino acid, wherein n is 12 to 17, or ii. comprising the sequence of SEQ ID NO 02 PXXLN(X n )RXDXD ( X m ) [FWY]XX[HKR]XX[NQST], wherein X is any amino acid, wherein n is 12 to 17 and m is 100 to 115, or iii. including according to SEQ ID NOs: 03, 04, 05 , any of 06, 07 or 08, preferably any of SEQ ID NOs 03, 04, 05, 06 or 07, more preferably any of SEQ ID NOs 03, 06 or 07, most preferably The polypeptide sequence of any one of SEQ ID NOs 03 or 06, or iv. any one of SEQ ID NOs: 03, 04, 05, 06, 07 or 08, preferably SEQ ID NOs 03, 04, 05, any of 06 or 07, more preferably any of SEQ ID NO 03, 06 or 07, most preferably a functional homologue, variant or derivative of any of SEQ ID NO 03 or 06, It has any of SEQ ID NO: 03, 04, 05, 06, 07 or 08, preferably any of SEQ ID NO 03, 04, 05, 06 or 07, more preferably SEQ ID NO 03 Any of , 06 or 07, preferably at least 80% of the overall sequence identity of the full length of the N-acetylglucosamine b-1,3-galactosyltransferase polypeptide of any of SEQ ID NOs 03 or 06 and has N-acetylglucosamine b-1,3-galactosyltransferase activity, or v. includes any one from SEQ ID NO: 03, 04, 05, 06, 07 or 08, preferably Any of SEQ ID NOs 03, 04, 05, 06 or 07, more preferably any of SEQ ID NOs 03, 06 or 07, most preferably at least 8, Oligopeptide sequences of 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b-1,3-half Lactosyltransferase activity, or vi. is any of SEQ ID NOs: 03, 04, 05, 06, 07 or 08, preferably SEQ ID NOs 03, 04, 05, 06 or Any one of 07, more preferably any one of SEQ ID NO 03, 06 or 07, most preferably a functional fragment of any one of SEQ ID NO 03 or 06, and has N-acetylglucosamine b-1 , 3-galactosyltransferase activity, or vii. comprising a polypeptide comprising or consisting of any of SEQ ID NO: 03, 04, 05, 06, 07 or 08, preferably SEQ ID NO 03 , any of 04, 05, 06 or 07, more preferably any of SEQ ID NO 03, 06 or 07, most preferably at least the full-length amino acid sequence of any of SEQ ID NO 03 or 06 consisting of an amino acid sequence of 80% sequence identity and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or b. PFAM domain IPR002659, and i. comprising SEQ ID NO 09 Sequence KT(X n )[FY]XXKXDXD(X m )[FHY]XXG(X without A,G,S)(X p )X(without F,H,W,Y)[DE]D[ILV] XX[AG], wherein X is any amino acid, wherein n is 13 to 16, m is 35 to 70, and p is 20 to 45, or ii. The polypeptide sequence of any of , or iii. is a functional homologue, variant or derivative of any of SEQ ID NO: 10, 11, 12, or 13, which has the same properties as SEQ ID NO: 10, 11, At least 80% overall sequence identity of any of the full-length N-acetylglucosamine b-1,3-galactosyltransferase polypeptides of 12 or 13 and having N-acetylglucosamine b-1,3 - Galactosyltransferase activity, or iv. comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, An oligopeptide sequence of 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b-1,3-galactosyltransferase activity, or v. is SEQ ID NO: 10, 11, A functional fragment of any one of 12 or 13, and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or vi. comprising a polypeptide comprising or consisting of a , 11, 12, or 13, consisting of amino acid sequences of at least 80% sequence identity to the full-length amino acid sequence of any one of 11, 12, or 13, and having N-acetylglucosamine b-1,3-galactosyltransferase active. 14. The method according to any one of specific embodiments 1 to 12 above, wherein the N-acetylglucosamine b-1,4-galactosyltransferase is a glycosyltransferase having: a. PFAM domain PF01755 and i. comprises the sequence EXXCXXSHXX[ILV][FWY]( Xn )EDD( Xm )[ACGST]XXYX[ILMV] of SEQ ID NO 14, wherein X is any amino acid, wherein n is 13 to 15 and m is from 50 to 76, or ii. including any of SEQ ID NO: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably SEQ ID NO: 15, 16, 17, Any one of 18, 20 or 21, more preferably the polypeptide sequence of any one of SEQ ID NO: 17, 18, 20 or 21, or iii. is SEQ ID NO: 15, 16, 17, 18, 19, Any one of 20, 21, 22 or 23, preferably any one of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably one of SEQ ID NO: 17, 18, 20 or 21 A functional homologue, variant or derivative of any of , which has any of SEQ ID NO: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably SEQ ID NO: any one of 15, 16, 17, 18, 20 or 21, more preferably the N-acetylglucosamine b-1,4- of any one of SEQ ID NO: 17, 18, 20 or 21 At least 80% overall sequence identity to the full length of the galactosyltransferase polypeptide and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or iv. including from SEQ ID NOs: 15, 16, 17 , any of 18, 19, 20, 21, 22 or 23, preferably any of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably SEQ ID NO: 17, 18 An oligopeptide sequence of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues of any of , 20, or 21, and N- Acetylglucosamine b-1,4-galactosyltransferase activity, or v. is any of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably Any of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably a functional fragment of any of SEQ ID NO: 17, 18, 20 or 21, and having N-acetylglucose Amine b-1,4-galactosyltransferase activity, or vi. Include polypeptides comprising or consisting of any of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably SEQ ID NOs: 15, 16, 17, 18 Any of , 20 or 21, more preferably an amino acid sequence of at least 80% sequence identity to the full-length amino acid sequence of any of SEQ ID NO: 17, 18, 20 or 21, and has N-acetylglucosamine b-1,4-galactosyltransferase activity, or b. PFAM domain PF00535, and i. the sequence comprising SEQ ID NO 24 R[KN]XXXXXXXXGXXXX[FL]XDXD( Xn )[ FHW]XXX[FHNY](X m )E[DE], wherein X is any amino acid, wherein n is 50 to 75 and m is 10 to 30, or ii. the sequence R[KN] comprising SEQ ID NO 25 XXXXXXXGXXXXFXDXD(X n )[FHW]XXX[FHNY](X m )E[DE](X p )[FWY]XX[HKR]XX[NQST], where X is any amino acid, where n is 50 to 75 , m is 10 to 30, and p is 20 to 25, or iii. comprises a polypeptide sequence according to any one of SEQ ID NOs: 26, 27 or 28, or iv. is in SEQ ID NO: 26, 27 or 28 A functional homologue, variant or derivative of any of SEQ ID NO: 26, 27 or 28 having a At least 80% overall sequence identity of either full length and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or v. including any one from SEQ ID NO: 26, 27, or 28 An oligopeptide sequence of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b- 1,4-galactosyltransferase activity, or vi. is a functional fragment of any one of SEQ ID NOs: 26, 27, or 28, and has N-acetylglucosamine b-1,4-galactosyltransferase Enzymatic activity, or vii. comprising a polypeptide comprising or consisting of an amino acid sequence having at least 80% sequence identity to the full-length amino acid sequence of any of SEQ ID NOs: 26, 27 or 28, and has N-acetylglucosamine b-1,4-galactosyltransferase activity, or c. PFAM domain PF02709 and does not have PFAM domain PF00535, and i. comprises the sequence of SEQ ID NO 29 [FWY]XX[FY ][FWY](X 23 )[FWY][G Q]X[DE]D, wherein X is any amino acid, or ii. the sequence comprising SEQ ID NO 30 [PV]W[GHNP]( Xn )[FWY][GQ]X[DE]D, wherein X is any amino acid wherein n is 21 to 24, or iii. comprises a polypeptide sequence according to any of SEQ ID NO: 31, 32, 33, 34, 35 or 36, or iv. is SEQ ID NO: A functional homologue, variant or derivative of any of 31, 32, 33, 34, 35 or 36 having the N- at least 80% overall sequence identity of any of the full-length acetylglucosamine b-1,4-galactosyltransferase polypeptides and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or v. comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, An oligopeptide sequence of 20 consecutive amino acid residues with N-acetylglucosamine b-1,4-galactosyltransferase activity, or vi. are SEQ ID NOs: 31, 32, 33, 34, The functional fragment of any one of 35 or 36, and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or vii. comprising a polypeptide comprising or consisting of having and SEQ ID NO: 31 , 32, 33, 34, 35 or 36, the full-length amino acid sequence of any one of the amino acid sequences of at least 80% sequence identity, and has N-acetylglucosamine b-1,4-half amino acid sequence Lactosyltransferase activity, or d. PFAM domain PF03808, and i. the sequence comprising SEQ ID NO 37 [ST][FHY]XN( Xn )DG(X16)[HKR]X[ST] FDXX [ST] XA, wherein X is any amino acid, and wherein n is 20 to 25, or ii. the sequence comprising SEQ ID NO 38 [ST][FHY]XN( Xn )DG( X16 )[HKR]X[ST ]FDXX[ST]XA(X m )[HR]XG[FWY](X p )GXGXXXQ[DE], where X is any amino acid, where n is 20 to 25, m is 40 to 50, and p is 22 to 30, or iii. comprising a polypeptide sequence according to any one of SEQ ID NO: 39, 40 or 41, or iv. being a functional homologue of any one of SEQ ID NO: 39, 40 or 41, A variant or derivative having any of the N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of SEQ ID NO: 39, 40 or 41 in complete agreement with Long at least 80% overall sequence identity and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or v. comprising from any of SEQ ID NOs: 39, 40 or 41 An oligopeptide sequence of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b-1, 4-galactosyltransferase activity, or vi. is a functional fragment of any one of SEQ ID NOs: 39, 40, or 41, and has N-acetylglucosamine b-1,4-galactosyltransferase activity , or vii. comprising a polypeptide comprising or consisting of an amino acid sequence having at least 80% sequence identity to the full-length amino acid sequence of any of SEQ ID NOs: 39, 40 or 41, and having N-acetylglucosamine b-1,4-galactosyltransferase activity. 15. The method according to any one of the above specific embodiments, wherein a. the N-acetylglucosamine-6-phosphotransferase is a polypeptide sequence comprising the polypeptide of UniProt ID P43577 or a function of the polypeptide of UniProt ID P43577 A sexual homologue, variant or derivative having at least 80% overall sequence identity with the full-length polypeptide of UniProt ID P43577 and having N-acetylglucosamine-6-phosphotransferase activity, and b. the L - Glutamine-D-fructose-6-phosphate transaminase is a polypeptide sequence comprising the polypeptide of UniProt ID P17169, or is a functional homologue, variant or derivative of the polypeptide having UniProt ID P17169, which has a At least 80% overall sequence identity of the full-length polypeptide of UniProt ID P17169 and having L-glutamine-D-fructose-6-phosphate transaminase activity; or A39T, R250C and G472S mutations different from the UniProt ID P17169 polypeptide modified version. 16. The method according to any one of the above specific embodiments, wherein the cell can metabolize a carbon source selected from the group comprising the following enumeration: glucose, fructose, galactose, lactose, sucrose, maltose, malto-oligosaccharide , maltotriose, sorbitol, xylose, rhamnose, mannose, methanol, ethanol, arabinose, trehalose, starch, cellulose, hemicellulose, corn infusion, high fructose syrup, molasses, glycerin, Acetate, citrate, lactic acid, pyruvic acid. 17. The method according to any one of the above specific embodiments, wherein the cell is unable to convert N-acetylglucosamine-6-phosphate to glucosamine-6-phosphate, and/or is unable to convert glucosamine-6-phosphate Phosphate is converted to fructose-6-phosphate. 18. The method according to any of the above specific embodiments, wherein the cell is modified to produce GDP-fucose. 19. The method according to any one of the above specific embodiments, wherein the cell is modified to promote GDP-fucose production, wherein the modification is selected from the group comprising the following enumeration: UDP-glucose:undec isoprene - Shaving of the gene encoding phosphoglucose-1-phosphotransferase, overexpression of the gene encoding GDP-L-fucose synthase, overexpression of the gene encoding GDP-mannose 4,6-dehydratase, mannose-1 - Overexpression of a gene encoding a phosphoguanylate transferase, overexpression of a gene encoding a phosphomannose mutase, or overexpression of a gene encoding a mannose-6-phosphate isomerase. 20. The method according to any of the above specific embodiments, wherein the cell is modified to produce UDP-galactose. 21. The method according to any one of the above specific embodiments, wherein the cell is modified to promote UDP-galactose production, wherein the modification is selected from the group comprising the following enumeration: 5'-nucleotidase/UDP-sugar Shaving of a gene encoding a hydrolase or shaving of a gene encoding a galactose-1-phosphate uridine transferase. 22. The method according to any one of the above specific embodiments, wherein the cell is modified to produce CMP-N-acetylneuraminic acid. 23. The method according to any one of the above specific embodiments, wherein the cell is modified to promote CMP-N-acetylneuraminic acid production, wherein the modification is selected from the group comprising the following enumeration: CMP-sialic acid synthesis Overexpression of gene encoding enzyme, overexpression of gene encoding sialic acid synthase, overexpression of gene encoding N-acetyl-D-glucosamine 2-epimerase. 24. The method according to any one of the above specific embodiments, wherein the cell is capable of expressing at least one other glycosyltransferase, wherein the other glycosyltransferase is selected from the group comprising: fucosyltransferase, saliva Acid transferase, Galactosyltransferase, Glucosyltransferase, Mannosyltransferase, N-Acetylglucosaminyltransferase, N-Acetylgalactosyltransferase, N-Acetylmannose Aminyltransferase, xylosyltransferase, glucuronyltransferase, galacturonyltransferase, glucosamine transferase, N-glycolyl neuraminosyltransferase, rhamnosyltransferase, N-acetyltransferase Rhamnosyltransferase, UDP-4-amino-4,6-dideoxy-N-acetyl-β-L-altrosamine transaminase (UDP-4-amino-4,6 -dideoxy-N-acetyl-beta-L-altrosamine transaminases), UDP-N-acetylglucosamine enolpyruvyl transferases (UDP- N -acetylglucosamine enolpyruvyl transferases) and fucosaminyltransferases (fucosaminyltransferases), - Preferably, the fucosyltransferase is selected from the group consisting of: α-1,2-fucosyltransferase, α-1,3-fucosyltransferase, α-1,4- Fucosyltransferases and α-1,6-fucosyltransferases, - preferably, the sialyltransferases are selected from the group consisting of: α-2,3-sialyltransferases, α-2 ,6-sialyltransferase and α-2,8-sialyltransferase, - preferably, the galactosyltransferase is selected from the group consisting of: β-1,3-galactosyltransferase, N- Acetylglucosamine β-1,3-galactosyltransferase, β-1,4-galactosyltransferase, N-acetylglucosamine β-1,4-galactosyltransferase, α-1, 3-Galactosyltransferase and α-1,4-Galactosyltransferase, - preferably, the glucosyltransferase is selected from the group consisting of α-glucosyltransferase, β-1,2-glucose Syltransferase, β-1,3-glucosyltransferase and β-1,4-glucosyltransferase, - preferably, the mannosyltransferase (mannosyltransferase) is selected from the list including: α-1, 2-mannosyltransferase, α-1,3-mannosyltransferase and α-1,6-mannosyltransferase, - preferably, the N-acetylglucosaminyltransferase is selected from Include the following enumeration: β-1,3-N-acetylglucosaminyltransferase and β-1,6-N-acetylglucosaminyltransferase, - preferably, the N-acetyl half Lactosamine transferase is α-1,3-N-acetylgalactosamine transferase. 25. The method according to specific embodiment 24, wherein the cell is modified in the expression or activity of the other glycosyltransferase. 26. The method according to any one of the above specific embodiments, wherein the cell uses one or more precursors for producing the disaccharide or oligosaccharide having a GlcNAc unit at the reducing end, the precursor being supplied to the cell from a culture medium. 27. The method according to any of the above specific embodiments, wherein the cell produces one or more precursors for producing the disaccharide or oligosaccharide having a GlcNAc unit at the reducing end. 28. The method according to any one of specific embodiments 26 or 27, wherein the precursor used to produce the disaccharide or oligosaccharide is completely converted to a disaccharide or oligosaccharide having a GlcNAc unit at the reducing end. 29. The method according to any one of the above-mentioned specific embodiments, wherein the cell produces a disaccharide or an oligosaccharide with a GlcNAc unit at the reducing end in the cell, and wherein part or substantially all of the generated reducing end has a GlcNAc unit. Disaccharides or oligosaccharides remain intracellular and/or are excreted via passive or active transport. 30. The method according to any one of the above specific embodiments, wherein the cell expresses a membrane transporter or a polypeptide with transport activity to transport the compound through the outer membrane of the cell wall, preferably, the cell is in the membrane transporter or The expression or activity of the polypeptide having transport activity is modified. 31. The method according to particular embodiment 30, wherein the membrane transporter or polypeptide having transport activity is selected from the group consisting of a transporter, PP-bond-hydrolysis-driven transporter, β-barrel porin, assisted transporter protein, putative transporter and phosphate transfer-driven group translocator, preferably, the transporter includes MFS transporter, sugar excretion transporter and chelatin exporter, preferably, the PP-bond-hydrolysis-driven The transporters include the ABC transporter and the chelatin exporter. 32. The method according to any one of specific embodiments 30 or 31, wherein the membrane transporter or the polypeptide with transport activity controls the reducing end with a disaccharide or oligosaccharide and/or one or more precursors and/or a GlcNAc unit. Or the flow of acceptors on the outer membrane of the cell wall, the one or more precursors and/or acceptors for the production of disaccharides or oligosaccharides with GlcNAc units at the reducing end. 33. The method according to any one of specific embodiments 30 or 32, wherein the membrane transporter or the polypeptide with transport activity provides the reducing end with an improved production of disaccharides or oligosaccharides of GlcNAc units and/or allows discharge and/or or promote excretion. 34. The method according to any one of specific embodiments 6 or 33, wherein the cell comprises a modification for reducing acetate production compared to an unmodified precursor cell. 35. The method according to specific embodiment 34, wherein the cell comprises lower or reduced expression and/or eliminated, impaired, reduced or delayed activity of any one or more proteins compared to unmodified precursor cells, the Protein contains: β-galactosidase, galactoside O-acetyltransferase, N-acetylglucosamine-6-phosphate deacetylase, glucosamine-6-phosphate deaminase, N-acetyl Glucosamine inhibitor protein, ribonucleotide monophosphatase, EIICBA-Nag, UDP-glucose:undec isoprene-phosphoglucose-1-phosphotransferase, L-fucosokinase, L-fucoid Carbohydrate isomerase, N-acetylneuraminic acid dissociating enzyme, N-acetylmannosamine kinase, N-acetylmannosamine-6-phosphate 2-epimerase, EIIAB-Man, EIIC-Man , EIID-Man, ushA, galactose-1-phosphate uridine transferase, glucose-1-phosphate adenosyltransferase, glucose-1-phosphatase, ATP-dependent 6-phosphofructokinase isokinase Enzyme 1, ATP-dependent 6-phosphofructokinase isozyme 2, glucose-6-phosphate isomerase, aerobic respiration regulatory protein, transcriptional repressor protein IclR, lon protease, glucose-specific translocation phosphotransferase enzyme IIBC component ptsG, glucose specific translocation phosphotransferase (PTS) enzyme IIBC component malX, enzyme IIA Glc , β-glucoside specific PTS enzyme II, fructose specific PTS polyphosphoryl transfer protein FruA and FruB, alcohol dehydrogenation Enzymes aldehyde dehydrogenase, pyruvate-formate dissociation enzyme, acetate kinase, phosphoacetyltransferase, phosphoacetyltransferase, pyruvate decarboxylase. 36. The method according to any of the above specific embodiments, wherein the cell is capable of producing phosphoenolpyruvate (PEP). 37. The method according to any one of specific embodiments 6 or 36, wherein the cell has a modification for promoting production and/or supply of phosphoenolpyruvate (PEP) compared to an unmodified precursor cell. 38. The method according to any one of specific embodiments 6 to 37, wherein the cell comprises an at least partially inactivated catabolic pathway of the selected monosaccharide, disaccharide or oligosaccharide involved in the Required for the production of disaccharides or oligosaccharides with GlcNAc units at the reducing end and/or for the production of disaccharides or oligosaccharides with GlcNAc units at the reducing end. 39. The method of any of the above specific embodiments, wherein the cell is resistant to lactose killing when the cell is grown in an environment where lactose is combined with one or more other carbon sources. 40. The method according to any one of the above-mentioned specific embodiments, wherein the cell produces a disaccharide or oligomer of GlcNAc at the reducing end of 90 g/L or more than 90 g/L in whole culture fluid and/or supernatant. Saccharides, and/or disaccharides or oligosaccharides having GlcNAc at the reducing end in the whole culture fluid and/or supernatant, have a purity of at least 80%, respectively, in the whole culture fluid and/or supernatant. The total amount of disaccharides or oligosaccharides with GlcNAc units at the reducing end and their precursors. 41. The method according to any of the above specific embodiments, wherein the cells are stably cultured in culture medium. 42. according to the method of any one of above-mentioned specific embodiment, wherein this condition comprises: - Use the substratum that comprises at least one precursor and/or acceptor, for producing the disaccharide or oligosaccharide that this reducing end has GlcNAc unit , and/or - adding at least one precursor and/or acceptor feedstock to the medium for the production of the disaccharide or oligosaccharide having a GlcNAc unit at the reducing end. 43. The method according to any one of the above specific embodiments, comprising at least one of the following steps: i) using a culture medium comprising at least one precursor and/or acceptor; ii) adding to the culture medium in the reactor At least one precursor and/or recipient feedstock, wherein the total reactor volume ranges from 250 mL (milliliters) to 10,000 m3 (cubic meters), preferably in a continuous manner, and preferably such that the final volume of the medium does not exceed the Three times the volume of the medium before the precursor and/or recipient feedstock, preferably no more than twice, more preferably less than twice; iii) adding at least one precursor and/or recipient feedstock to the medium in the reactor, wherein the total reactor volume ranges from 250 mL (milliliters) to 10,000 m3 (cubic meters), preferably in a continuous manner, and preferably such that the final volume of the medium does not exceed that prior to the addition of the precursor and/or recipient feedstock. three times the volume of the medium, preferably no more than twice, more preferably less than twice, wherein preferably the pH of the precursor and/or recipient feedstock is set between 3 and 7, and preferably the precursor The temperature of the material and/or the recipient feedstock is maintained between 20°C and 80°C; iv) by means of feeding the solution in a continuous adding at least one precursor and/or acceptor feedstock to the culture medium in a manner; v) adding at least one precursor in a continuous manner over the course of 1 day, 2 days, 3 days, 4 days, 5 days by means of the feed solution and/or recipient feedstock to culture medium, wherein preferably the pH of the feed solution is set between 3 and 7, and preferably the temperature of the feed solution is maintained between 20°C and 80°C The method produces a disaccharide or oligosaccharide having a GlcNAc unit at the reducing end, and its concentration in the final culture is at least 50 g/L, preferably at least 75 g/L, more preferably at least 90 g/L, more preferably At least 100 g/L, more preferably at least 125 g/L, more preferably at least 150 g/L, more preferably at least 175 g/L, more preferably at least 200 g/L. 44. The method according to any one of specific embodiments 1 to 42, comprising at least one of the following steps: i) using at least 50 grams per liter of initial reactor volume, more preferably at least 75 grams, more preferably medium of at least 100 grams, more preferably at least 120 grams, more preferably at least 150 grams of lactose, wherein the reactor volume ranges from 250 mL to 10,000 m 3 (cubic meters); ii) the addition per liter of initial reactor volume contains at least 50 grams, more preferably at least 75 grams, more preferably at least 100 grams, more preferably at least 120 grams, more preferably at least 150 grams of lactose feedstock to culture medium, preferably in a continuous manner, and preferably, such that The final volume of the medium is no more than three times, preferably no more than two times, more preferably less than two times the volume of the medium before the addition of the lactose feedstock; iii) the addition contains at least 50 grams, more preferably at least 50 grams per liter of initial reactor volume 75 grams, more preferably at least 100 grams, more preferably at least 120 grams, more preferably at least 150 grams of lactose feedstock to culture medium, wherein the reactor volume ranges from 250 mL to 10,000 m 3 (cubic meters), preferably In a continuous manner, and preferably, the final volume of the medium is no more than three times the volume of the medium before the addition of the lactose feedstock, preferably no more than two times, more preferably less than two times, wherein preferably, the lactose feedstock is The pH is set between 3 and 7, and preferably, the temperature of the lactose feedstock is maintained between 20°C and 80°C; iv) by means of feeding solution at 1 day, 2 days, 3 days, Lactose feedstock was added to the medium in a continuous manner during 4 days, 5 days; v) Lactose feedstock was added in a continuous manner during 1 day, 2 days, 3 days, 4 days, 5 days by means of feeding solution to culture medium, wherein the concentration of the lactose feed solution is 50 g/L, preferably 75 g/L, more preferably 100 g/L, more preferably 125 g/L, more preferably 150 g/L, more preferably 175 g/L, more preferably 200 g/L, more preferably 225 g/L, more preferably 250 g/L, more preferably 275 g/L, more preferably 300 g/L, more preferably 325 g/L, better 350 g/L, better 375 g/L, better 400 g/L, better 450 g/L, better 500 g/L, still better 550 g/L, preferably 600 g/L; wherein preferably, the pH of the feed solution is set between 3 and 7, and preferably, the temperature of the feed solution is maintained at 20°C and 80°C Between C; the method produces a disaccharide or oligosaccharide having a GlcNAc unit at the reducing end, and its concentration in the final culture is at least 50 g/L, preferably at least 75 g/L, more preferably at least 90 g/L, More preferably at least 100g/L, more preferably at least 125g/L, more preferably at least 150g/L, more preferably at least 175g/L, More preferably, it is at least 200 g/L. 45. The method according to particular embodiment 44, wherein the lactose feedstock is prepared by adding lactose from the start of the culture at a concentration of at least 5 mM, preferably 30, 40, 50, 60, 70, 80, 90, 100, 150 mM, More preferably this is done by adding lactose at a concentration of >300 mM. 46. The method according to any one of specific embodiments 44 or 45, wherein the lactose feedstock is accomplished by adding lactose to the culture at a concentration such that at least 5 mM is obtained throughout the production stage of the culture, preferably Lactose concentrations of 10 mM or 30 mM. 47. The method according to any of the above specific embodiments, wherein the cells are cultured for at least about 60, 80, 100 or about 120 hours or in a continuous manner. 48. The method according to any of the above specific embodiments, wherein the medium comprises at least one precursor selected from the group comprising lactose, galactose, fucose and sialic acid. 49. The method according to any one of the above specific embodiments, wherein a first stage of exponential cell growth is provided, followed by a second stage of growth by adding a carbonaceous substrate, preferably glucose or sucrose, to the medium comprising the precursor. , only a carbon substrate, preferably glucose or sucrose, is added to the medium. 50. The method according to any one of specific embodiments 1 to 49, wherein a first stage of exponential cell growth is provided by adding a carbonaceous substrate, preferably glucose or sucrose, to the medium comprising the precursor, followed by In the second stage, a carbon-based substrate, preferably glucose or sucrose, and a precursor are added to the medium. 51. The method according to any one of the above-described specific embodiments, wherein the cell produces a mixture comprising at least one charged, preferably sialylated, disaccharide or oligosaccharide comprising a GlcNAc unit at the reducing end. /or oligosaccharides and/or neutral disaccharides and/or oligosaccharides. 52. The method according to any one of the above-described specific embodiments, wherein the cell produces a mixture that is charged, preferably a sialylated oligosaccharide and/or neutral, comprising at least the oligosaccharide of the GlcNAc unit at the reducing end oligosaccharides. 53. The method according to any one of the above specific embodiments, wherein the oligosaccharide is selected from the list comprising: 2-fucosyl lacto-N-disaccharide, 4-fucosyl lacto-N-disaccharide , 2-4-Difucosyllacto-N-disaccharide, 3'-Sialyllacto-N-disaccharide, 6'-Sialyllacto-N-disaccharide, 3',6'-disialo Lacto-N-disaccharide, 6,6'-disialo-Lacto-N-disaccharide, 2'-fucosyl-3'-sialo-N-disaccharide, 2'-fucosyl- 6'-Sialyl lacto-N-disaccharide, 4-Fucosyl-3'-Sialyl lacto-N-disaccharide, 4-fucosyl-6'-Sialyl lacto-N-disaccharide, 2-Fucosyl N-acetyllactosamine, 3'-fucosyl N-acetyllactosamine, 2,3'-difucosyl N-acetyllactosamine, 3'-sialic acid N -Acetylactosamine, 6'-Sialyl-N-Acetylactosamine, 3',6'-Disialo-N-Acetylactosamine, 6,6'-Disialo-N-Acetylactosamine, 2 '-Fucosyl-3'-sialo-N-acetyllactosamine, 2'-fucosyl-6'-sialo-N-acetyllactosamine, 3-fucosyl-3'-sialo Acid N-acetyllactosamine, 3'-fucosyl-6'-sialic acid N-acetyllactosamine, P1 trisaccharide (Gal-a1,4-Gal-b1,4-GlcNAc), allograft Epitope (Gal-a1,3-Gal-b1,4-GlcNAc), Gal-b14-(Galb13)-GlcNAc, poly-N-acetyllactosamine, GalNAc-b1,3-Gal-b1,4- GlcNAc. 54. The method according to any one of specific embodiments 1 or 3 to 53, wherein the disaccharide having a GlcNAc unit at the reducing end excludes chitobiose (GlcNAc-GlcNAc). 55. The method according to any one of the above specific embodiments, wherein the oligosaccharide having a GlcNAc unit at the reducing end does not include chitobiose, preferably N-glycans, at the reducing end. 56. A metabolically engineered cell for producing an oligosaccharide or disaccharide having N-acetylglucosamine units at the reducing end, wherein the cell is capable of: (i) synthesizing nucleotide-sugar and monosaccharide N-acetylglucosamine (GlcNAc), and (ii) express a glycosyltransferase to saccharify the GlcNAc monosaccharide to produce the disaccharide or oligosaccharide. 57. A metabolically engineered cell for producing an oligosaccharide having an N-acetylglucosamine unit at the reducing end, wherein the cell is capable of: (i) synthesizing nucleotide-sugar and monosaccharide N-acetylglucosamine (GlcNAc) , and (ii) expressing a glycosyltransferase to saccharify the GlcNAc monosaccharide to produce an oligosaccharide. 58. A metabolically engineered cell for producing a mixture comprising (i) disaccharides and/or oligosaccharides having N-acetylglucosamine units at the reducing end and (ii) one or more lactose-based mammalian milks Oligosaccharides (MMOs), wherein the cell is capable of: (i) synthesizing the nucleotide-sugar and monosaccharide N-acetylglucosamine (GlcNAc), and (ii) expressing a glycosyltransferase to glycosylate the GlcNAc monosaccharide, and A disaccharide or oligosaccharide with an N-acetylglucosamine unit at the reducing end is produced. 59. The cell according to any one of specific embodiments 56 or 58, wherein the cell is metabolically engineered to produce a disaccharide or oligosaccharide having N-acetylglucosamine at the reducing end. 60. The cell according to specific embodiment 57, wherein the cell is metabolically engineered to produce an oligosaccharide having N-acetylglucosamine at the reducing end. 61. The cell of any one of specific embodiments 56 to 60, wherein the cell is modified with one or more gene expression modules, characterized in that the expression of any of the expression modules is constitutive or induced by a natural inducer. produce. 62. The cell according to any one of specific embodiments 56 to 61, wherein the cell comprises multiple copies of the same coding DNA sequence encoding a protein. 63. The cell according to any one of specific embodiments 56 to 62, wherein the cell expresses at least one N-acetylglucosamine-6-phosphotransferase and phosphatase to synthesize N-acetylglucosamine. 64. The cell according to any one of specific embodiments 56 to 63, wherein the cell expresses at least one glycosyltransferase to glycosylate N-acetylglucosamine. 65. The cell according to any one of specific embodiments 56 to 64, wherein the cell is modified in the expression or activity of an enzyme selected from the group consisting of N-acetylglucosamine-6-phosphotransferase, Phosphatase, glycosyltransferase, L-glutamine-D-fructose-6-phosphate transaminase and UDP-glucose 4-epimerase. 66. The cell according to any one of specific embodiments 56 to 65, wherein the nucleotide-sugar is selected from the group comprising: UDP-galactose (UDP-Gal), UDP-N-acetylglucosamine ( UDP-GlcNAc), UDP-N-acetylgalactosamine (UDP-GalNAc), UDP-N-acetylmannosamine (UDP-ManNAc), GDP-fucose (GDP-Fuc), GDP-mannose (GDP-Man), UDP-glucose (UDP-Glc), UDP-2-acetamido-2,6-dideoxy--L arabino-4-hexulose, UDP-2-acetamido -2,6-Dideoxy--L-lyxo-4-hexulose, UDP-N-acetyl-L-rhamnosamine (UDP-L-RhaNAc or UDP-2-acetamido -2,6-dideoxy-L-mannose), dTDP-N-acetylfucosamine, UDP-N-acetylfucosamine (UDP-L-FucNAc or UDP-2-acetamide 2,6-dideoxy-L-galactose), UDP-N-acetyl-L-pneumolysamine (UDP-L-PneNAC or UDP-2-acetamido-2,6-bis Deoxy-L-talose), UDP-N-Acetylmuramic acid, UDP-N-Acetyl-L-Quinosamine (UDP-L-QuiNAc or UDP-2-Acetylamino- 2,6-dideoxy-L-glucose), GDP-L-isorhamnose, CMP-N-acetylneuraminic acid (CMP-Neu5Ac), CMP-N-glycolylneuraminic acid (CMP- Neu5Gc), CMP-Neu4Ac, CMP-Neu5Ac9N 3 , CMP-Neu4,5Ac 2 , CMP-Neu5,7Ac 2 , CMP-Neu5,9Ac 2 , CMP-Neu5,7(8,9)Ac 2 , UDP-glucaldehyde acid salt, UDP-galacturonate, GDP-rhamnose and UDP-xylose. 67. The cell according to any one of specific embodiments 56 to 66, wherein the nucleotide-sugar is UDP-galactose, and the glycosyltransferase is N-acetylglucosamine b-1,3-galactose Syltransferase or N-acetylglucosamine b-1,4-galactosyltransferase. 68. The cell according to any one of specific embodiments 56 to 67, wherein the oligosaccharide has lacto-N-disaccharide (Gal-b1,3-GlcNAc) or N-acetyllactosamine (Gal-b1) at the reducing end , 4-GlcNAc). 69. The cell according to any one of specific embodiments 56 to 68, wherein the N-acetylglucosamine b-1,3-galactosyltransferase is a glycosyltransferase having: a. PFAM domain PF00535, and i. include the sequence of SEQ ID NO 01 [AGPS]XXLN(X n )RXDXD, wherein X is any amino acid, wherein n is 12 to 17, or ii. include the sequence PXXLN(X n ) of SEQ ID NO 02 RXDXD(X m )[FWY]XX[HKR]XX[NQST], wherein X is any amino acid, wherein n is 12 to 17 and m is 100 to 115, or iii. including according to SEQ ID NOs: 03, 04 , any of 05, 06, 07 or 08, preferably any of SEQ ID NOs 03, 04, 05, 06 or 07, more preferably any of SEQ ID NOs 03, 06 or 07, most Preferably it is the polypeptide sequence of any one of SEQ ID NO 03 or 06, or iv. is any one of SEQ ID NO: 03, 04, 05, 06, 07 or 08, preferably SEQ ID NO 03, 04, Any of 05, 06 or 07, more preferably any of SEQ ID NOs 03, 06 or 07, most preferably a functional homologue, variant or derivative of any of SEQ ID NOs 03 or 06 substance, which has any of SEQ ID NO: 03, 04, 05, 06, 07 or 08, preferably any of SEQ ID NO: 03, 04, 05, 06 or 07, more preferably SEQ ID Any of NO 03, 06 or 07, preferably at least 80% of the entire length of the N-acetylglucosamine b-1,3-galactosyltransferase polypeptide of any of SEQ ID NO 03 or 06 Sequence identity and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or v. including any one from SEQ ID NO: 03, 04, 05, 06, 07, or 08, vs. Preferably any one of SEQ ID NO 03, 04, 05, 06 or 07, more preferably any one of SEQ ID NO 03, 06 or 07, most preferably at least any one of SEQ ID NO 03 or 06 Oligopeptide sequences of 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b-1,3 -Galactosyltransferase activity, or vi. is any of SEQ ID NOs: 03, 04, 05, 06, 07 or 08, preferably any of SEQ ID NOs 03, 04, 05, 06 or 07 One, more preferably any one of SEQ ID NO 03, 06 or 07, most preferably S A functional fragment of any one of EQ ID NOs 03 or 06, and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or vii. comprising a polypeptide comprising or consisting of a NO: any one of 03, 04, 05, 06, 07 or 08, preferably any one of SEQ ID NO 03, 04, 05, 06 or 07, more preferably one of SEQ ID NO 03, 06 or 07 any one, preferably the amino acid sequence of at least 80% sequence identity of the full-length amino acid sequence of any one of SEQ ID NO 03 or 06 is formed, and has N-acetylglucosamine b-1, 3-Galactosyltransferase activity, or b. PFAM domain IPR002659, and i. the sequence comprising SEQ ID NO 09 KT( Xn )[FY]XXKXDXD( Xm )[FHY]XXG(X, no A, G , S)(X p )X (no F, H, W, Y) [DE]D[ILV]XX[AG], where X is any amino acid, where n is 13 to 16 and m is 35 to 70 , and p is 20 to 45, or ii. comprises a polypeptide sequence according to any of SEQ ID NOs: 10, 11, 12, or 13, or iii. is any of SEQ ID NOs: 10, 11, 12, or 13 A functional homologue, variant or derivative having the same number as in the N-acetylglucosamine b-1,3-galactosyltransferase polypeptide of SEQ ID NO: 10, 11, 12 or 13 At least 80% overall sequence identity of either full length and having N-acetylglucosamine b-1,3-galactosyltransferase activity, or iv. Included from SEQ ID NO: 10, 11, 12, or 13 Any oligopeptide sequence of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b-1,3-galactosyltransferase activity, or v. is a functional fragment of any one of SEQ ID NOs: 10, 11, 12, or 13, and has N-acetylglucosamine b-1,3- Galactosyltransferase activity, or vi. comprising a polypeptide comprising or consisting of an amine having at least 80% sequence identity to the full-length amino acid sequence of any of SEQ ID NOs: 10, 11, 12, or 13 It is composed of amino acid sequence and has N-acetylglucosamine b-1,3-galactosyltransferase activity. 70. The cell according to any one of specific embodiments 56 to 69, wherein the N-acetylglucosamine b-1,4-galactosyltransferase is a glycosyltransferase having: a. PFAM domain PF01755, and i. comprises the sequence EXXCXXSHXX[ILV][FWY]( Xn )EDD( Xm )[ACGST]XXYX[ILMV] of SEQ ID NO 14, wherein X is any amino acid, wherein n is 13 to 15 and m is 50 to 76, or ii. includes according to any of SEQ ID NO: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably SEQ ID NO: 15, 16, 17, 18 Any one of , 20 or 21, more preferably the polypeptide sequence of any one of SEQ ID NO: 17, 18, 20 or 21, or iii. is SEQ ID NO: 15, 16, 17, 18, 19, 20 , 21, 22 or 23, preferably any of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably SEQ ID NO: 17, 18, 20 or 21. A functional homologue, variant or derivative of any having the same as any of SEQ ID NO: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably SEQ ID NO : any one of 15, 16, 17, 18, 20 or 21, more preferably the N-acetylglucosamine b-1,4-half of any one of SEQ ID NO: 17, 18, 20 or 21 At least 80% overall sequence identity to the full length of the lactosyltransferase polypeptide and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or iv. including from SEQ ID NOs: 15, 16, 17, Any of 18, 19, 20, 21, 22 or 23, preferably any of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably SEQ ID NO: 17, 18, An oligopeptide sequence of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues of any of 20 or 21, and having N- Acetylglucosamine b-1,4-galactosyltransferase activity, or v. is any of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22 or 23, preferably Any of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably a functional fragment of any of SEQ ID NO: 17, 18, 20 or 21, and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or vi. comprising a polypeptide comprising or consisting of a Any one of 20, 21, 22 or 23, preferably any one of SEQ ID NO: 15, 16, 17, 18, 20 or 21, more preferably one of SEQ ID NO: 17, 18, 20 or 21 Any of the full-length amino acid sequences of at least 80% sequence identity consisting of amino acid sequences, and have N-acetylglucosamine b-1,4-galactosyltransferase activity, or b. PFAM domain PF00535, and i. comprising the sequence of SEQ ID NO 24 R[KN]XXXXXXXGXXXX[FL]XDXD( Xn )[FHW]XXX[FHNY]( Xm )E[DE], wherein X is any amino acid, wherein n is 50 to 75, m is 10 to 30, or ii. the sequence comprising SEQ ID NO 25 R[KN]XXXXXXXGXXXXFXDXD( Xn )[FHW]XXX[ FHNY ]( Xm )E[DE](Xp) [FWY]XX[HKR]XX[NQST], wherein X is any amino acid, wherein n is 50 to 75, m is 10 to 30, and p is 20 to 25, or iii. including according to SEQ ID NO: 26 The polypeptide sequence of any of , 27, or 28, or iv. is a functional homologue, variant, or derivative of any of SEQ ID NO: 26, 27, or 28, having the same properties as SEQ ID NO: 26 , 27 or 28 of the N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of at least 80% overall sequence identity at least 80% of the full length and having N-acetylglucosamine b-1, 4-galactosyltransferase activity, or v. comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 from any of SEQ ID NOs: 26, 27, or 28 , 19, 20 oligopeptide sequences of contiguous amino acid residues with N-acetylglucosamine b-1,4-galactosyltransferase activity, or vi. is SEQ ID NO: 26, 27, or 28 A functional fragment of any one, and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or vii. comprising a polypeptide comprising or consisting of having and SEQ ID NO: 26, 27 or Any of 28 full-length amino acid sequences consisting of amino acid sequences of at least 80% sequence identity and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or c. PFAM domain PF02709 without PFAM domain PF00535, and i. comprising the sequence of SEQ ID NO 29 [FWY]XX[FY][FWY]( X23 )[FWY][GQ]X[DE]D, where X is any amino acid, or ii. including SEQ ID NO 30 The sequence of [PV]W[GHNP]( Xn )[FWY][GQ]X[DE]D, wherein X is any amino acid, wherein n is 21 to 24, or iii. including according to SEQ ID NO: 31 A polypeptide sequence of any of , 32, 33, 34, 35, or 36, or iv. a functional homologue, variant of any of SEQ ID NO: 31, 32, 33, 34, 35, or 36 or a derivative having at least 80% of the full length of any of the N-acetylglucosamine b-1,4-galactosyltransferase polypeptides of SEQ ID NO: 31, 32, 33, 34, 35 or 36 % overall sequence identity with N-acetylglucosamine b-1,4-galactosyltransferase activity, or v. includes any one from SEQ ID NO: 31, 32, 33, 34, 35, or 36 An oligopeptide sequence of at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues with N-acetylglucosamine b- 1,4-galactosyltransferase activity, or vi. is a functional fragment of any one of SEQ ID NOs: 31, 32, 33, 34, 35, or 36, and has N-acetylglucosamine b-1, 4-galactosyltransferase activity, or vii. comprising a polypeptide comprising or consisting of at least 80 having the full-length amino acid sequence of any of SEQ ID NOs: 31, 32, 33, 34, 35 or 36 consisting of amino acid sequences of % sequence identity and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or d. PFAM domain PF03808, and i. including the sequence of SEQ ID NO 37 [ST][FHY]XN( Xn )DG(X16)[HKR]X[ST] FDXX [ST]XA, wherein X is any amino acid, and wherein n is 20 to 25, or ii. including SEQ Sequence of ID NO 38 [ST][FHY]XN( Xn )DG(X16)[HKR]X[ST] FDXX [ST]XA( Xm )[HR]XG[FWY](Xp) GXGXXXQ [ DE], wherein X is any amino acid, wherein n is 20 to 25, m is 40 to 50, and p is 22 to 30, or iii. including according to any of SEQ ID NOs: 39, 40 or 41 A polypeptide sequence, or iv. is a functional homologue, variant or derivative of any one of SEQ ID NO: 39, 40 or 41 having the N-B with SEQ ID NO: 39, 40 or 41 at least 80% overall sequence identity of any of the full-length acetylglucosamine b-1,4-galactosyltransferase polypeptides and having N-acetylglucosamine b-1,4-galactosyltransferase activity, or v . comprising at least 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 consecutive amino acid residues from any of SEQ ID NOs: 39, 40, or 41 oligopeptide sequence with N-acetylglucosamine b-1,4-galactosyltransferase activity, or vi. is a functional fragment of any one of SEQ ID NOs: 39, 40 or 41 with N - acetylglucosamine b-1,4-galactosyltransferase activity, or vii. comprising a polypeptide comprising or consisting of a full-length amino acid sequence with any of SEQ ID NO: 39, 40 or 41 It consists of amino acid sequences with at least 80% sequence identity and has N-acetylglucosamine b-1,4-galactosyltransferase activity. 71. The cell according to any one of specific embodiments 56 to 70, wherein a. the N-acetylglucosamine-6-phosphotransferase is a polypeptide sequence comprising a polypeptide of UniProt ID P43577, or is a polypeptide of UniProt ID P43577 A functional homologue, variant or derivative having at least 80% overall sequence identity with the full-length polypeptide of UniProt ID P43577 and having N-acetylglucosamine-6-phosphotransferase activity, and b. The L-glutamine-D-fructose-6-phosphate transaminase is a polypeptide sequence comprising the polypeptide of UniProt ID P17169, or is a functional homologue, variant or derivative of the polypeptide with UniProt ID P17169, which Has at least 80% overall sequence identity with the full-length polypeptide of UniProt ID P17169, and has L-glutamine-D-fructose-6-phosphate transaminase activity; is A39T, R250C and G472S different from the UniProt ID P17169 polypeptide Modified version of mutation. 72. The cell according to any one of specific embodiments 56 to 71, wherein the cell can metabolize a carbon source selected from the group comprising the following enumeration: glucose, fructose, galactose, lactose, sucrose, maltose, malt- Oligosaccharides, maltotriose, sorbitol, xylose, rhamnose, mannose, methanol, ethanol, arabinose, trehalose, starch, cellulose, hemicellulose, corn infusion, high fructose syrup, molasses, Glycerin, acetate, citrate, lactic acid, pyruvic acid. 73. The cell according to any one of specific embodiments 56 to 72, wherein the cell is unable to convert N-acetylglucosamine-6-phosphate into glucosamine-6-phosphate, and/or is unable to convert glucosamine- 6-phosphate is converted to fructose-6-phosphate. 74. The cell according to any one of specific embodiments 56 to 73, wherein the cell is modified to produce GDP-fucose. 75. The cell according to any one of specific embodiments 56 to 74, wherein the cell is modified to promote GDP-fucose production, wherein the modification is selected from the group comprising the following enumeration: UDP-glucose: undecylisoamyl Shaving of the gene encoding diene-phosphoglucose-1-phosphotransferase, overexpression of the gene encoding GDP-L-fucose synthase, overexpression of the gene encoding GDP-mannose 4,6-dehydratase, mannose - Overexpression of a gene encoding 1-phosphate guanylate transferase, overexpression of a gene encoding phosphomannose mutase, or overexpression of a gene encoding mannose-6-phosphate isomerase. 76. The cell according to any one of specific embodiments 56 to 75, wherein the cell is modified to produce UDP-galactose. 77. The cell according to any one of specific embodiments 56 to 76, wherein the cell is modified to promote UDP-galactose production, wherein the modification is selected from the group comprising the following enumeration: 5'-nucleotidase/UDP - Shaving of the gene encoding a glycohydrolase or of the gene encoding a galactose-1-phosphate uridine transferase. 78. The cell according to any one of specific embodiments 56 to 75, wherein the cell is modified to produce CMP-N-acetylneuraminic acid. 79. The cell according to any one of specific embodiments 56 to 78, wherein the cell is modified to promote CMP-N-acetylneuraminic acid production, wherein the modification is selected from the group comprising the following enumeration: CMP-saliva Overexpression of the gene encoding acid synthase, overexpression of the gene encoding sialic acid synthase, overexpression of the gene encoding N-acetyl-D-glucosamine 2-epimerase. 80. The cell according to any one of specific embodiments 56 to 79, wherein the cell is capable of expressing at least one other glycosyltransferase, wherein the other glycosyltransferase is selected from the group comprising: Fucosyltransferase , Sialyltransferase, Galactosyltransferase, Glucosyltransferase, Mannosyltransferase, N-Acetylglucosaminetransferase, N-Acetylgalactosyltransferase, N-Acetyl Mannosyltransferase, xylosyltransferase, glucuronyltransferase, galacturonosyltransferase, glucosamine transferase, N-glycolylneuramidotransferase, rhamnosyltransferase, N- Acetyl rhamnosyltransferase, UDP-4-amino-4,6-dideoxy-N-acetyl-β-L-altrosaminotransferase, UDP-N-acetylglucose Amine enolacetonyltransferase and fucosyltransferase, - preferably, the fucosyltransferase is selected from the group consisting of: α-1,2-fucosyltransferase, α-1 , 3-fucosyltransferase, α-1,4-fucosyltransferase and α-1,6-fucosyltransferase, - preferably, the sialyltransferase is selected from the group consisting of the following To enumerate: α-2,3-sialyltransferase, α-2,6-sialyltransferase and α-2,8-sialyltransferase, - preferably, the galactosyltransferase is selected from the group consisting of the following Listed: β-1,3-galactosyltransferase, N-acetylglucosamine β-1,3-galactosyltransferase, β-1,4-galactosyltransferase, N-acetylglucosamine β-1,4-galactosyltransferase, α-1,3-galactosyltransferase and α-1,4-galactosyltransferase, - preferably, the glucosyltransferase is selected from the group consisting of the following Enumerated: α-glucosyltransferase, β-1,2-glucosyltransferase, β-1,3-glucosyltransferase and β-1,4-glucosyltransferase, - preferably, the mannose The syltransferase is selected from the group consisting of the following list: α-1,2-mannosyltransferase, α-1,3-mannosyltransferase and α-1,6-mannosyltransferase, - preferably, The N-acetylglucosaminyltransferase is selected from the group consisting of the following list: β-1,3-N-acetylglucosaminyltransferase and β-1,6-N-acetylglucosaminyltransferase , - Preferably, the N-acetylgalactosamine transferase is α-1,3-N-acetylgalactosamine transferase. 81. The cell according to specific embodiment 80, wherein the cell is modified in the expression or activity of the other glycosyltransferase. 82. The cell according to any one of specific embodiments 56 to 81, wherein the cell uses one or more precursors for producing the disaccharide or oligosaccharide having GlcNAc units at the reducing end, and the precursor supplies the cell. 83. The cell according to any one of specific embodiments 56 to 82, wherein the cell produces one or more precursors for producing the disaccharide or oligosaccharide having a GlcNAc unit at the reducing end. 84. The cell according to any one of specific embodiments 82 or 83, wherein the precursor for producing the disaccharide or oligosaccharide is completely converted to a disaccharide or oligosaccharide having a GlcNAc unit at the reducing end. 85. The cell according to any one of specific embodiments 56 to 84, wherein the cell produces a disaccharide or oligosaccharide with a GlcNAc unit at the reducing end in the cell, and wherein part or substantially all of the reducing end produced has GlcNAc The unitary disaccharides or oligosaccharides remain intracellular and/or are excreted via passive or active transport. 86. The cell according to any one of specific embodiments 56 to 85, wherein the cell expresses a membrane transporter or a polypeptide with transport activity to transport the compound through the outer membrane of the cell wall, preferably, the cell is transported in the membrane The expression or activity of the protein or polypeptide having transport activity is modified. 87. The cell according to specific embodiment 86, wherein the membrane transporter or polypeptide having transport activity is selected from the group consisting of the following enumeration: transporter, PP-bond-hydrolysis-driven transporter, β-barrel porin, assisted transporter protein, putative transporter and phosphate transfer-driven group translocator, preferably, the transporter includes MFS transporter, sugar excretion transporter and chelatin exporter, preferably, the PP-bond-hydrolysis-driven The transporters include the ABC transporter and the chelatin exporter. 88. The cell according to any one of specific embodiments 86 or 87, wherein the membrane transporter or the polypeptide with transport activity controls the reducing end with a disaccharide or oligosaccharide of GlcNAc unit and/or one or more precursors and/ Or the flow of acceptors on the outer membrane of the cell wall, the one or more precursors and/or acceptors for the production of disaccharides or oligosaccharides with GlcNAc units at the reducing end. 89. The cell according to any one of specific embodiments 86 to 88, wherein the membrane transporter or the polypeptide with transport activity provides that the reducing end has an improved production of a disaccharide or oligosaccharide of a GlcNAc unit and/or allows to discharge and/or or promote excretion. 90. The cell according to any one of specific embodiments 56 to 89, wherein the cell comprises a modification for reducing acetate production compared to an unmodified precursor cell. 91. The cell according to specific embodiment 90, wherein the cell comprises a lower or reduced expression and/or ablated, impaired, reduced or delayed activity of any one or more proteins compared to an unmodified precursor cell, the Protein contains: β-galactosidase, galactoside O-acetyltransferase, N-acetylglucosamine-6-phosphate deacetylase, glucosamine-6-phosphate deaminase, N-acetyl Glucosamine inhibitor protein, ribonucleotide monophosphatase, EIICBA-Nag, UDP-glucose:undec isoprene-phosphoglucose-1-phosphotransferase, L-fucosokinase, L-fucoid Carbohydrate isomerase, N-acetylneuraminic acid dissociating enzyme, N-acetylmannosamine kinase, N-acetylmannosamine-6-phosphate 2-epimerase, EIIAB-Man, EIIC-Man , EIID-Man, ushA, galactose-1-phosphate uridine transferase, glucose-1-phosphate adenosyltransferase, glucose-1-phosphatase, ATP-dependent 6-phosphofructokinase isokinase Enzyme 1, ATP-dependent 6-phosphofructokinase isozyme 2, glucose-6-phosphate isomerase, aerobic respiration regulatory protein, transcriptional repressor protein IclR, lon protease, glucose-specific translocation phosphotransferase enzyme IIBC component ptsG, glucose specific translocation phosphotransferase (PTS) enzyme IIBC component malX, enzyme IIA Glc , β-glucoside specific PTS enzyme II, fructose specific PTS polyphosphoryl transfer protein FruA and FruB, alcohol dehydrogenation Enzymes aldehyde dehydrogenase, pyruvate-formate dissociation enzyme, acetate kinase, phosphoacetyltransferase, phosphoacetyltransferase, pyruvate decarboxylase. 92. The cell according to any one of specific embodiments 56 to 91, wherein the cell is capable of producing phosphoenolpyruvate (PEP). 93. The cell according to any one of specific embodiments 56 to 92, having a modification for the enhanced production and/or supply of phosphoenolpyruvate (PEP) compared to an unmodified precursor cell. 94. The cell according to any one of specific embodiments 56 to 93, wherein the cell comprises an at least partially inactivated catabolic pathway of the selected monosaccharide, disaccharide or oligosaccharide involved in the Required for the production of disaccharides or oligosaccharides with GlcNAc units at the reducing end and/or for the production of disaccharides or oligosaccharides with GlcNAc units at the reducing end. 95. The cell according to any one of specific embodiments 56 to 94, wherein the cell is resistant to the phenomenon of lactose killing when the cell is grown in an environment in which lactose is combined with one or more other carbon sources. 96. The cell according to any one of specific embodiments 56 to 95, wherein the cell produces a disaccharide with GlcNAc at this reducing end of 90 g/L or more than 90 g/L in whole culture fluid and/or supernatant Or oligosaccharides, and/or disaccharides or oligosaccharides with GlcNAc at this reducing end in the whole culture fluid and/or supernatant have a purity of at least 80% in the whole culture fluid and/or supernatant The total amount of disaccharides or oligosaccharides with GlcNAc units at the reducing end and their precursors, respectively, is calculated. 97. The cell according to any one of specific embodiments 56 to 96, wherein the cell produces a mixture comprising at least one charged, preferably sialylated, disaccharide or oligosaccharide comprising at least one reducing end having a GlcNAc unit. Saccharides and/or oligosaccharides and/or neutral disaccharides and/or oligosaccharides. 98. The cell according to any one of specific embodiments 56 to 97, wherein the cell produces a mixture comprising at least the charged, preferably sialylated oligosaccharide of an oligosaccharide having a GlcNAc unit at the reducing end Neutral oligosaccharides. 99. The cell according to any one of specific embodiments 56 to 98, wherein the oligosaccharide is selected from the list comprising: Disaccharide, 2-4-Difucosyllacto-N-disaccharide, 3'-Sialylolacto-N-disaccharide, 6'-Sialyllacto-N-disaccharide, 3',6'-Disaccharide Sialylolacto-N-disaccharide, 6,6'-disialolacto-N-disaccharide, 2'-fucosyl-3'-sialyolacto-N-disaccharide, 2'-fucose yl-6'-sialyol-N-disaccharide, 4-fucosyl-3'-sialyol-N-disaccharide, 4-fucosyl-6'-sialyol-N-bisaccharide Sugar, 2-fucosyl N-acetyllactosamine, 3'-fucosyl N-acetyllactosamine, 2,3'-difucosyl N-acetyllactosamine, 3'-saliva acid N-acetyllactosamine, 6'-sialo-N-acetyllactosamine, 3',6'-disialo-N-acetyllactosamine, 6,6'-disialo-N-acetyllactosamine , 2'-fucosyl-3'-sialic acid N-acetyllactosamine, 2'-fucosyl-6'-sialic acid N-acetyllactosamine, 3-fucosyl-3' -Sialyl N-acetyllactosamine, 3'-fucosyl-6'-sialic acid N-acetyllactosamine, P1 trisaccharide (Gal-a1,4-Gal-b1,4-GlcNAc), iso Source graft epitope (Gal-a1,3-Gal-b1,4-GlcNAc), Gal-b14-(Galb13)-GlcNAc, poly-N-acetyllactosamine, GalNAc-b1,3-Gal-b1, 4-GlcNAc. 100. The cell according to any one of specific embodiments 56 or 58 to 99, wherein the disaccharide having a GlcNAc unit at the reducing end excludes chitobiose (GlcNAc-GlcNAc). 101. The cell according to any one of specific embodiments 56 to 100, wherein the oligosaccharide having a GlcNAc unit at the reducing end excludes chitobiose, preferably N-glycans, at the reducing end. 102. The cell according to any one of specific embodiments 56 to 101 or the method according to any one of specific embodiments 1 to 55, wherein the cell is a bacterium, fungus, yeast, plant cell, animal cell or protozoan cell , - preferably, the bacteria are Escherichia coli strains, more preferably Escherichia coli strains K12 strains, and more preferably, the Escherichia coli strains K12 strains are Escherichia coli MG1655, - preferably, the fungi are selected from the group consisting of black Genus (genus) of the group of Mold, Reticulinum, Penicillium, White mold or Koji, - preferably, the yeast belongs to a genus selected from the group consisting of Saccharomyces, Zygomyces, Bis A genus of the group of Escherichia, Kermagtella, Hansenula, Ascomyces, Bacteroides, Kluyveromyces or Debaryomyces, - compared Preferably, the plant cells are algal cells or derived from tobacco, alfalfa, rice, tomato, cotton, rapeseed, soybean, corn or cereal plants, - preferably, the animal cells are derived from non-human mammals, birds, fish , invertebrates, reptiles, amphibians or insects, or genetically modified cell lines derived from human cells excluding embryonic stem cells, more preferably, the human and non-human mammalian cells are epithelial cells, embryonic kidney cells, Fibroblasts, COS cells, Chinese hamster ovary (CHO) cells, murine myeloma cells, NIH-3T3 cells, non-mammary adult stem cells or derivatives thereof, more preferably, the insect cells are derived from autumn armyworm, silkworm, Cabbage Spodoptera, Trichoderma or Drosophila melanogaster, - preferably, the protozoan cell is a Leishmania tarantula cell. 103. The cell according to specific embodiment 102 or the method according to specific embodiment 102, wherein the cell is a live Gram-negative bacteria comprising a reduction or elimination of poly-N-acetylene compared to unmodified precursor cells - Glucosamine (PNAG), Enterobacterial Common Antigen (ECA), Cellulose, Koramic Acid, Core Oligosaccharide, Osmotic Pressure Regulating Interstitial Glucan (OPG), Glucosylglycerol, Polysaccharide and/or Trehalose synthesis. 104. The method according to any one of specific embodiments 1 to 55, 102 or 103, wherein the separation comprises at least one of the following: clarification, ultrafiltration, nanofiltration, two-phase partition, reverse osmosis, microfiltration, Activated carbon or carbon treatment, nonionic surfactant treatment, enzymatic digestion, tangential flow high performance filtration, tangential flow ultrafiltration, affinity chromatography, ion exchange chromatography, hydrophobic interaction chromatography and/or gel filtration, Ligand exchange chromatography. 105. The method of any one of specific embodiments 1 to 55, 102 to 104, further comprising purifying the disaccharide or oligosaccharide from the cell. 106. The method according to any one of specific embodiments 1 to 55, 102 to 105, wherein the purification comprises at least one of the following steps: use of activated carbon or carbon, use of carbon, nanofiltration, ultrafiltration, electrophoresis, Enzyme treatment or ion exchange, use of alcohols, use of aqueous alcohol mixtures, crystallization, evaporation, precipitation, drying, spray drying, freeze drying, spray freeze drying, freeze spray drying, belt drying, conveyor belt drying, vacuum belt drying, vacuum conveyor drying, tumble drying, tumble drying, vacuum tumble drying or vacuum tumble drying. 107. A cell according to any one of specific embodiments 56 to 103 or a method according to any one of specific embodiments 1 to 55, 102 to 106 for producing a disaccharide having an N-acetylglucosamine unit at the reducing end or oligosaccharides. 108. A cell according to any one of specific embodiments 56, 58 to 103 or the method according to any one of specific embodiments 1, 3 to 55, 102 to 106 for producing a reducing end with N-acetylglucosamine Use of oligosaccharides of units, preferably for the production of charged or neutral oligosaccharides having N-acetylglucosamine units at the reducing end, more preferably for the production of sialylated or fucosylated forms of LNB or LacNAc .
以下實施例將作為本發明的進一步說明和澄清,並且不旨在限制本發明。The following examples are intended to further illustrate and clarify the invention and are not intended to limit the invention.
實施例Example
實施例Example 11 :材料和方法大腸桿菌: Materials and Methods Escherichia coli
培養基culture medium
Luria肉湯(Luria Broth,LB)培養基由1%胰蛋白腖(Difco, Erembodegem, Belgium)、0.5%酵母菌萃取物(Difco)和0.5%氯化鈉(VWR. Leuven, Belgium)組成。用於96孔盤培養物實驗或搖瓶實驗的培養基包含2.00g/L NH4Cl、5.00g/L(NH4)2SO4、2.993g/L KH2PO4、7.315g/L K2HPO4、8.372g/L MOPS、0.5g/L NaCl、0.5g/L MgSO4.7H2O、30 g/L蔗糖或30 g/L甘油、1ml/L維生素溶液、100μL/L鉬酸鹽溶液和1ml/L硒溶液。如各自實施例中所述,0.30 g/L 唾液酸、20 g/L 乳糖、20 g/L LacNAc及/或20 g/L LNB額外添加至培養基作為前驅物。用1M KOH將培養基的pH值設為7。維生素溶液由3.6g/L FeCl2.4H2O、5g/L CaCl2.2H2O、1.3g/L MnCl2.2H2O、0.38g/L CuCl2.2H2O、0.5g/L CoCl2.6H2O、0.94g/L ZnCl2、0.0311g/L H3BO4、0.4g/L Na2EDTA.2H2O和1.01g/L鹽酸硫胺組成。鉬酸鹽溶液含有0.967g/L NaMoO4.2H2O。硒溶液含42g/L SeO2。Luria Broth (LB) medium consisted of 1% trypsin (Difco, Erembodegem, Belgium), 0.5% yeast extract (Difco) and 0.5% sodium chloride (VWR. Leuven, Belgium). Medium for 96-well plate culture experiments or shake flask experiments contains 2.00g/L NH4Cl, 5.00g/L (NH4)2SO4, 2.993g/L KH2PO4, 7.315g/L K2HPO4, 8.372g/L MOPS, 0.5g /L NaCl, 0.5g/L MgSO4.7H2O, 30 g/L sucrose or 30 g/L glycerol, 1 ml/L vitamin solution, 100 μL/L molybdate solution and 1 ml/L selenium solution. As described in the respective examples, 0.30 g/L sialic acid, 20 g/L lactose, 20 g/L LacNAc and/or 20 g/L LNB were additionally added to the medium as precursors. The pH of the medium was set to 7 with 1M KOH. The vitamin solution consists of 3.6g/L FeCl2.4H2O, 5g/L CaCl2.2H2O, 1.3g/L MnCl2.2H2O, 0.38g/L CuCl2.2H2O, 0.5g/L CoCl2.6H2O, 0.94g/L ZnCl2, 0.0311g /L H3BO4, 0.4g/L Na2EDTA.2H2O and 1.01g/L thiamine hydrochloride. The molybdate solution contained 0.967g/L NaMoO4.2H2O. The selenium solution contains 42g/L SeO2.
用於發酵的基本培養基含有6.75g/L NH4Cl、1.25g/L(NH4)2SO4、2.93g/L KH2PO4和7.31g/L KH2PO4、0.5g/L NaCl、0.5g/L MgSO4.7H2O、30 g/L蔗糖或30 g/L甘油、1mL/L維生素溶液、100μL/L鉬酸鹽溶液和1mL/L硒溶液,組成與上述相同。如各自實施例中所述,0.30 g/L 唾液酸、20 g/L 乳糖、20 g/L LacNAc及/或20 g/L LNB額外添加至用於發酵的基本培養基作為前驅物。The minimal medium used for fermentation contained 6.75g/L NH4Cl, 1.25g/L(NH4)2SO4, 2.93g/L KH2PO4 and 7.31g/L KH2PO4, 0.5g/L NaCl, 0.5g/L MgSO4.7H2O, 30 g /L sucrose or 30 g/L glycerol, 1 mL/L vitamin solution, 100 μL/L molybdate solution and 1 mL/L selenium solution, with the same composition as above. As described in the respective examples, 0.30 g/L sialic acid, 20 g/L lactose, 20 g/L LacNAc and/or 20 g/L LNB were additionally added to the minimal medium for fermentation as precursors.
藉由高壓滅菌(121℃,21分鐘)對複合培養基進行滅菌,並藉由過濾(0.22μm Sartorius)對基本培養基進行滅菌。必要時,藉由添加抗生素:例如氯黴素(chloramphenicol)(20mg/L)、羧卡本西林(carbenicillin)(100mg/L)、觀黴素(40mg/L)及/或康黴素(kanamycin)(50mg/L))使培養基具有選擇性。The complex medium was sterilized by autoclaving (121°C, 21 min) and the minimal medium was sterilized by filtration (0.22 μm Sartorius). If necessary, by adding antibiotics: such as chloramphenicol (20mg/L), carbenicillin (100mg/L), spectinomycin (40mg/L) and/or kanamycin ) (50 mg/L)) makes the medium selective.
質體plastid
pKD46(Red輔助質體,胺苄青黴素抗性)、pKD3(包含FRT側接的氯黴素抗性(cat)基因)、pKD4(包含FRT側接的康黴素抗性(kan)基因)和pCP20(表現FLP重組酶活性)質體從R.Cunin教授(Vrije Universiteit Brussel, Belgium in 2007)獲得。pKD46 (Red helper plastid, ampicillin resistance), pKD3 (containing FRT flanked chloramphenicol resistance (cat) gene), pKD4 (containing FRT flanked kanamycin resistance (kan) gene) and The pCP20 (expressing FLP recombinase activity) plastid was obtained from Prof. R. Cunin (Vrije Universiteit Brussel, Belgium in 2007).
質體維持在從Invitrogen購買的宿主大腸桿菌DH5α(F -, phi80d lacZΔM15, Δ( lacZYA- argF) U169, deoR, recA1, endA1, hsdR17(rk -, mk +), phoA, supE44, lambda -, thi-1, gyrA96, relA1)中。 Plastids were maintained in host E. coli DH5α (F - , phi80d lacZΔ M15, Δ( lacZYA - argF ) U169, deoR , recA1 , endA1 , hsdR17(rk - , mk + ), phoA , supE44 , lambda - , purchased from Invitrogen thi -1, gyrA96 , rel A1).
菌株和突變Strains and Mutations
大腸桿菌K12 MG1655[λ -,F -,rph-1]於2007年3月從Coli Genetic StockCenter(US),CGSC菌株#:7740獲得。使用Datsenko和Wanner(PNAS 97(2000),6640-6645)發表的技術進行基因破壞、基因導入和基因置換。這項技術是基於藉由lambda Red重組酶進行的同源重組後的抗生素選擇。翻轉酶重組酶的後續催化確保在最終生產菌株中去除抗生素選擇盒。 E. coli K12 MG1655 [λ − , F − , rph-1] was obtained from Coli Genetic Stock Center (US), CGSC strain #: 7740 in March 2007. Gene disruption, gene introduction and gene replacement were performed using techniques published by Datsenko and Wanner (PNAS 97 (2000), 6640-6645). This technology is based on antibiotic selection after homologous recombination by lambda Red recombinase. Subsequent catalysis by flippase recombinase ensures removal of the antibiotic selection cassette in the final production strain.
將攜帶Red輔助質體pKD46的轉形子在含有胺苄青黴素(100mg/L)和L-阿拉伯糖(10mM)的10ml LB培養基中於30℃培養至OD 600nm為0.6。藉由第一次用50ml冰冷水洗滌,第二次用1ml冰冷水洗滌,使細胞成為電轉感受態(electrocompetent)。然後,將細胞重懸浮在50μl的冰冷水中。使用Gene Pulser™(BioRad)(600Ω、25μFD和250伏)用50μl細胞和10-100ng線性雙鏈DNA產物進行電穿孔。 Transformants carrying the Red helper plastid pKD46 were grown in 10 ml LB medium containing ampicillin (100 mg/L) and L-arabinose (10 mM) at 30 °C to an OD 600 nm of 0.6. Cells were made electrocompetent by a first wash with 50 ml ice-cold water and a second wash with 1 ml of ice-cold water. Then, cells were resuspended in 50 μl of ice-cold water. Electroporation was performed with 50 μl of cells and 10-100 ng of linear double-stranded DNA product using a Gene Pulser™ (BioRad) (600Ω, 25 μFD and 250 volts).
電穿孔後,將細胞加入1mL LB培養基中於37℃培養1h,並最後塗佈於含有25mg/L氯黴素或50mg/L康黴素的LB瓊脂上,以選擇抗生素抗性轉形子。所選擇的突變體藉由PCR用修飾區上游和下游的引子進行驗證,並於42℃在LB瓊脂中生長以失去輔助質體。對突變體測試胺苄青黴素敏感性。After electroporation, cells were added to 1 mL of LB medium for 1 h at 37°C, and finally plated on LB agar containing 25 mg/L chloramphenicol or 50 mg/L kanamycin to select for antibiotic-resistant transfectants. Selected mutants were verified by PCR with primers upstream and downstream of the modified region and grown in LB agar at 42°C to lose helper plastids. Mutants were tested for ampicillin sensitivity.
使用pKD3、pKD4及其衍生物作為模板,藉由PCR獲得線性ds-DNA擴增子。所用的引子有一部分序列與模板互補,另一部分與染色體DNA上必須發生重組的那一側互補。對於基因敲除,同源區域被設計為目標基因的起始密碼子和終止密碼子的上游50-nt和下游50-nt。對於基因敲入,必須考慮轉錄起點(+1)。PCR產物經PCR純化,Dpnl消化,從瓊脂糖凝膠再純化,並懸浮於溶析緩衝液(5mM Tris,ph8.0)中。Linear ds-DNA amplicons were obtained by PCR using pKD3, pKD4 and their derivatives as templates. The primers used have one part of the sequence complementary to the template and another part complementary to the side of the chromosomal DNA on which recombination must occur. For gene knockout, homology regions were designed to be 50-nt upstream and 50-nt downstream of the start and stop codons of the target gene. For knock-in, transcription start (+1) must be considered. PCR products were PCR purified, Dpnl digested, repurified from agarose gels, and suspended in elution buffer (5 mM Tris, pH 8.0).
將選擇的突變體用pCP20質體轉形,pCP20質體為胺苄青黴素和氯黴素抗性質體,其顯示溫度敏感複製和熱誘導的FLP合成。於30℃選擇胺苄青黴素抗性轉形子,然後於42℃在LB中純化少數菌落,並且然後測試所有抗生素抗性和FLP輔助質體的丟失。用對照引子檢查基因剃除和敲入。Selected mutants were transformed with pCP20 plastids, which are ampicillin and chloramphenicol-resistant plastids, which show temperature-sensitive replication and heat-induced FLP synthesis. Ampicillin resistant transformants were selected at 30°C, then a few colonies were purified in LB at 42°C and then tested for all antibiotic resistance and loss of FLP helper plastids. Gene shaves and knock-ins were checked with control primers.
在GDP-岩藻糖及岩藻糖基化寡醣產生的一實施例中,突變菌株衍生自大腸桿菌K12 MG1655,其包括大腸桿菌 wcaJ和 thyA基因的剃除及持續型表現建構體的基因敲入,該建構體含有蔗糖轉運體(例如,源自大腸桿菌W的CscB(UniProt ID E0IXR1))、果糖激酶(例如,源自運動醱酵單胞菌( Zymomonas mobilis,ZmFrk)的frk(UniProt ID Q03417))、蔗糖磷酸化酶(例如,源自青春雙歧桿菌( Bifidobacterium adolescentis)的BaSP(UniProt ID A0ZZH6)),另外包括表現質體,其具有用於α-1,2-岩藻糖基轉移酶(例如,來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1))及/或α-1,3-岩藻糖基轉移酶(例如,來自幽門螺旋桿菌的HpFucT(UniProt ID O30511))的持續型表現建構體、且具有用於大腸桿菌thyA(UniProt ID P0A884)的持續型表現建構體作為選擇性標記。岩藻糖基轉移酶基因的亦可經由基因敲入而存在於突變的大腸桿菌菌株。藉由基因剃除大腸桿菌基因(包括 glgC、 agp、 pfkA、 pfkB、 pgi、 arcA、 iclR、 pgi和 lon)可進一步優化在突變大腸桿菌菌株中GDP-岩藻糖產生,如WO2016075243及WO2012007481所述。GDP-岩藻糖產生可另外被優化,其包括甘露糖-6-磷酸鹽異構酶(例如,來自大腸桿菌的manA(UniProt ID P00946))、磷酸甘露糖變位酶(例如,來自大腸桿菌的manB(UniProt ID P24175))、甘露糖-1-磷酸鹽鳥苷酸轉移酶(例如,來自大腸桿菌的manC(UniProt ID P24174))、GDP-甘露糖4,6-脫水酶(例如,來自大腸桿菌的gmd(UniProt ID P0AC88))及GDP-L-岩藻糖合成酶(例如,來自大腸桿菌的fcl(UniProt ID P32055))的持續型表現建構體的基因敲入。GDP-岩藻糖產生亦可藉由大腸桿菌fucK及fucI的基因剃除與含有岩藻糖通透酶(例如,來自大腸桿菌的fucP(UniProt ID P11551))及具有岩藻糖激酶/岩藻糖-1-磷酸鹽鳥苷酸轉移酶活性的雙官能酶(例如,來自脆弱擬桿菌的fkp(UniProt ID SUV40286.1))的持續型表現建構體之基因敲入而獲得。如果產生GDP-岩藻糖的突變菌株旨在製造岩藻糖基化乳糖結構,則該菌株還需藉由基因剃除大腸桿菌LacZ、LacY和LacA基因以及用於乳糖通透酶(例如,大腸桿菌LacY(UniProt ID P02920))的持續型表現建構體之基因敲入進行修飾。或者,及/或另外,GDP-岩藻糖及/或岩藻糖基化寡醣產生可藉由持續型轉錄單元(constitutive transcriptional units)的基因敲入而在突變大腸桿菌菌株中進一步優化,該轉錄單元包含膜轉運蛋白,例如來自阪崎腸桿菌的MdfA(UniProt ID A0A2T7ANQ9)、來自楊氏檸檬酸桿菌的的MdfA(UniProt ID D4BC23)、來自大腸桿菌的MdfA(UniProt ID P0AEY8)、來自肺炎克雷伯氏菌的MdfA(UniProt ID G9Z5F4)、來自大腸桿菌的iceT(UniProt ID A0A024L207)或來自楊氏檸檬酸桿菌的iceT(UniProt ID D4B8A6)。 In one example of GDP-fucose and fucosylated oligosaccharide production, the mutant strain is derived from E. coli K12 MG1655, which includes shaving of the E. coli wcaJ and thyA genes and knockout of the persistent expression construct In, the construct contains a sucrose transporter (eg, CscB (UniProt ID E0IXR1) from E. coli W), fructokinase (eg, frk (UniProt ID from Zymomonas mobilis , ZmFrk) Q03417)), sucrose phosphorylase (eg, BaSP from Bifidobacterium adolescentis (UniProt ID A0ZZH6)), additionally including expressing plastids with α-1,2-fucosyl Transferase (eg, HpFutC from Helicobacter pylori (GenBank No. AAD29863.1)) and/or α-1,3-fucosyltransferase (eg, HpFucT from Helicobacter pylori (UniProt ID O30511)) and has a persistent expression construct for E. coli thyA (UniProt ID P0A884) as a selectable marker. The fucosyltransferase gene can also be present in mutant E. coli strains via gene knock-in. GDP-fucose production in mutant E. coli strains can be further optimized by genetically shaving E. coli genes including glgC , agp , pfkA , pfkB , pgi , arcA , iclR , pgi and lon , as described in WO2016075243 and WO2012007481 . GDP-fucose production can additionally be optimized including mannose-6-phosphate isomerase (eg, manA from E. coli (UniProt ID P00946)), phosphomannose mutase (eg, from E. coli manB (UniProt ID P24175)), mannose-1-phosphate guanylate transferase (eg, manC from E. coli (UniProt ID P24174)), GDP-mannose 4,6-dehydratase (eg, from Knock-in of persistent expression constructs of gmd from E. coli (UniProt ID P0AC88)) and GDP-L-fucose synthase (eg, fcl from E. coli (UniProt ID P32055)). GDP-fucose production can also be achieved by gene shaving of E. coli fucK and fucI with fucose permeases (eg, fucP from E. coli (UniProt ID P11551)) and with fucokinase/fuco Obtained by knock-in of a persistent expression construct of a bifunctional enzyme with sugar-1-phosphate guanylate transferase activity (eg, fkp from Bacteroides fragilis (UniProt ID SUV40286.1)). If a GDP-fucose-producing mutant strain is intended to make fucosylated lactose structures, the strain also needs to genetically shave the E. coli LacZ, LacY, and LacA genes and for lactose permease (e.g., large intestine Bacillus LacY (UniProt ID P02920)) was modified by knock-in of a persistent expression construct. Alternatively, and/or in addition, GDP-fucose and/or fucosylated oligosaccharide production can be further optimized in mutant E. coli strains by gene knock-in of constitutive transcriptional units, which Transcription units comprise membrane transporters such as MdfA from Enterobacter sakazakii (UniProt ID A0A2T7ANQ9), MdfA from Citrobacter johnsonii (UniProt ID D4BC23), MdfA from Escherichia coli (UniProt ID P0AEY8), MdfA from Lebsiella (UniProt ID G9Z5F4), iceT from E. coli (UniProt ID A0A024L207) or iceT from Citrobacter japonicus (UniProt ID D4B8A6).
在唾液酸產生的一實施例中,突變菌株衍生自大腸桿菌K12 MG1655,其包括持續型轉錄單元的基因敲入,該持續型轉錄單元含有一或多個複製的N-乙醯葡萄糖胺-6-磷酸轉移酶(例如,來自啤酒酵母菌的GNA1(UniProt ID P43577))、N-乙醯葡萄糖胺2-表異構酶(例如,來自卵形擬桿菌( Bacteroides ovatus)的AGE(UniProt ID A7LVG6))、N-乙醯神經胺酸合成酶(例如,來自腦膜炎雙球菌( Neisseria meningitidis)(UniProt ID E0NCD4)或空腸曲桿菌( Campylobacter jejuni)(UniProt ID Q93MP9))。 In one example of sialic acid production, the mutant strain is derived from E. coli K12 MG1655, which includes a knock-in of a persistent transcription unit containing one or more replicates of N-acetylglucosamine-6 - Phosphotransferase (eg, GNA1 from Saccharomyces cerevisiae (UniProt ID P43577)), N-acetylglucosamine 2-epimerase (eg, AGE from Bacteroides ovatus (UniProt ID A7LVG6) )), N-acetylneuraminic acid synthase (eg, from Neisseria meningitidis (UniProt ID E0NCD4) or Campylobacter jejuni (UniProt ID Q93MP9)).
或者,及/或另外,唾液酸產生可藉由持續型轉錄單元的基因敲入而獲得,該持續型轉錄單元含有UDP-N-乙醯葡萄糖胺2-表異構酶(例如,來自空腸曲桿菌的NeuC(UniProt ID Q93MP8))及N-乙醯神經胺酸合成酶(例如,來自腦膜炎雙球菌(UniProt ID E0NCD4)或空腸曲桿菌(UniProt ID Q93MP9))。Alternatively, and/or additionally, sialic acid production can be obtained by gene knock-in of a persistent transcription unit containing UDP-N-acetylglucosamine 2-epimerase (eg, from Bacillus NeuC (UniProt ID Q93MP8)) and N-acetylneuraminic acid synthase (eg, from Neisseria meningitidis (UniProt ID E0NCD4) or Aspergillus jejuni (UniProt ID Q93MP9)).
或者及/或另外,唾液酸產生可藉由持續型轉錄單元的基因敲入而獲得,該持續型轉錄單元含有磷葡萄胺變位酶(phosphoglucosamine mutase)(例如,來自大腸桿菌的glmM(UniProt ID P31120))、N-乙醯葡萄糖胺-1-磷酸鹽尿苷轉移酶/葡萄糖胺-1-磷酸鹽乙醯基轉移酶(例如,來自大腸桿菌的glmU(UniProt ID P0ACC7))、UDP-N-乙醯葡萄糖胺2-表異構酶(例如,來自空腸曲桿菌的NeuC(UniProt ID Q93MP8))和N-乙醯神經胺酸合成酶(例如,來自腦膜炎雙球菌(UniProt ID E0NCD4)或空腸曲桿菌(UniProt ID Q93MP9))。Alternatively and/or additionally, sialic acid production can be obtained by gene knock-in of a persistent transcription unit containing a phosphoglucosamine mutase (e.g., glmM (UniProt ID) from E. coli. P31120)), N-acetylglucosamine-1-phosphate uridine transferase/glucosamine-1-phosphate acetyltransferase (eg, glmU from E. coli (UniProt ID P0ACC7)), UDP-N - Acetylglucosamine 2-epimerase (eg, NeuC from Aspergillus jejuni (UniProt ID Q93MP8)) and N-acetylneuraminic acid synthase (eg, from Neisseria meningitidis (UniProt ID E0NCD4) or Aspergillus jejuni (UniProt ID Q93MP9)).
或者,及/或另外,唾液酸產生可藉由持續型轉錄單元的基因敲入而獲得,該持續型轉錄單元含有雙官能UDP-GlcNAc2-表異構酶/N-乙醯甘露糖胺激酶(例如,來自小鼠(品系C57BL/6J)(UniProt ID Q91WG8))、N-醯基神經胺酸-9-磷酸合成酶(N-acylneuraminate-9-phosphate synthetase)(例如,來自假單胞菌屬( Pseudomonassp.)UW4(UniProt ID K9NPH9)及N-醯基神經胺酸-9-磷酸酶(例如,來自磁藻屬候選( Candidatus Magnetomorumsp.)HK-1(UniProt ID KPA15328.1)或來自多形擬桿菌( Bacteroides thetaiotaomicron)(UniProt ID Q8A712))。 Alternatively, and/or additionally, sialic acid production can be obtained by gene knock-in of a persistent transcription unit containing a bifunctional UDP-GlcNAc2-epimerase/N-acetylmannosamine kinase ( For example, from mouse (strain C57BL/6J) (UniProt ID Q91WG8), N-acylneuraminate-9-phosphate synthetase (for example, from Pseudomonas spp. ( Pseudomonas sp.) UW4 (UniProt ID K9NPH9) and N-acylneuraminic acid-9-phosphatase (eg, from Candidatus Magnetomorum sp.) HK-1 (UniProt ID KPA15328.1) or from Bacteroides thetaiotaomicron (UniProt ID Q8A712)).
或者,及/或另外,唾液酸產生可藉由持續型轉錄單元的基因敲入而獲得,該持續型轉錄單元含有磷葡萄胺變位酶(例如,來自大腸桿菌的glmM(UniProt ID P31120))、N-乙醯葡萄糖胺-1-磷酸鹽尿苷轉移酶/葡萄糖胺-1-磷酸鹽乙醯基轉移酶(例如,來自大腸桿菌的glmU(UniProt ID P0ACC7))、雙官能UDP-GlcNAc 2-表異構酶/N-乙醯甘露糖胺激酶(例如,來自 小鼠(品系C57BL/6J)(UniProt ID Q91WG8)、N-醯基神經胺酸-9-磷酸合成酶(例如,來自假單胞菌屬UW4(UniProt ID K9NPH9)及N-醯基神經胺酸-9-磷酸酶(例如,來自磁藻屬候選( Candidatus Magnetomorumsp.)HK-1(UniProt ID KPA15328.1)或來自多形擬桿菌(UniProt ID Q8A712))。 Alternatively, and/or additionally, sialic acid production can be obtained by gene knock-in of a persistent transcription unit containing a phosphoglucosamine mutase (eg, glmM from E. coli (UniProt ID P31120)) , N-acetylglucosamine-1-phosphate uridine transferase/glucosamine-1-phosphate acetyltransferase (eg, glmU from E. coli (UniProt ID P0ACC7)), bifunctional UDP-GlcNAc 2 - epimerase/N-acetylmannosamine kinase (e.g., from mouse (strain C57BL/6J) (UniProt ID Q91WG8), N-acylneuraminic acid-9-phosphate synthase (e.g., from sham) Unimonas UW4 (UniProt ID K9NPH9) and N-acylneuraminic acid-9-phosphatase (eg, from Candidatus Magnetomorum sp. HK-1 (UniProt ID KPA15328.1) or Bacteroides (UniProt ID Q8A712)).
藉由大腸桿菌基因(包括一或多個 nagA、 nagB、 nagC、 nagD、 nagE、 nanA、 nanE、 nanK、 manX、 manY及 manZ)的基因剃除,如WO18122225所述、及/或大腸桿菌基因(包括一或多個 nanT、 poxB、 ldhA、 adhE、 aldB、 pflA、 pflC、 ybiY、 ackA及/或 pta)的基因剃除、以及持續型轉錄單元的基因敲入可進一步優化在突變大腸桿菌菌株中的唾液酸產生,該持續型轉錄單元包括一或多個複製的L-麩醯胺—D-果糖-6-磷酸轉胺酶(例如,來自大腸桿菌的突變體glmS*54(與UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006))),較佳為一個磷酸酶(例如,來自包含aphA、Cof、HisB、OtsB、SurE、Yaed、YcjU、YedP、YfbT、YidA、YigB、YihX、YniC、YqaB、YrbL、AppA、Gph、SerB、YbhA、YbiV、YbjL、Yfb、YieH、YjgL、YjjG、YrfG及YbiU的大腸桿菌基因中任一或多個、或者來自惡臭假單胞菌的PsMupP、來自啤酒酵母菌的ScDOG1或來自枯草芽孢桿菌的BsAraL)及乙醯輔酶A合成酶(例如,來自大腸桿菌的acs(UniProt ID P27550)),如WO18122225所述。 By gene shaving of E. coli genes (including one or more nagA , nagB , nagC , nagD , nagE , nanA , nanE , nanK , manX , manY and manZ ) as described in WO18122225, and/or E. coli genes ( Gene shaving, including one or more nanT , poxB , ldhA , adhE , aldB , pflA , pflC , ybiY , ackA and/or pta ), and gene knock-in of persistent transcription units can be further optimized in mutant E. coli strains sialic acid production, this persistent transcription unit includes one or more replicated L-glutamine-D-fructose-6-phosphate transaminase (e.g., mutant glmS*54 from E. coli (with UniProt ID P17169 The wild-type E. coli glmS differs by having the A39T, R250C and G472S mutations, as described by Deng et al. (Biochimie 88, 419-29 (2006))), preferably a phosphatase (e.g., from a phosphatase comprising aphA, Cof, HisB, OtsB, SurE, Yaed, YcjU, YedP, YfbT, YidA, YigB, YihX, YniC, YqaB, YrbL, AppA, Gph, SerB, YbhA, YbiV, YbjL, Yfb, YieH, YjgL, YjjG, YrfG and Any one or more of the E. coli genes of YbiU, or PsMupP from Pseudomonas putida, ScDOG1 from Saccharomyces cerevisiae, or BsAraL from Bacillus subtilis) and acetyl-CoA synthase (eg, from E. coli acs (UniProt ID P27550)) as described in WO18122225.
對於唾液酸化寡醣產生,該唾液酸產生菌株進一步修飾,以表現N-醯基神經胺酸胞苷醯轉移酶(N-acylneuraminate cytidylyltransferase)(例如,來自空腸曲桿菌的NeuA酶(UniProt ID Q93MP7)、來自流感嗜血桿菌( Haemophilus influenzae)的NeuA酶(GenBank No. AGV11798.1)或來自出血性巴氏桿菌( Pasteurella multocida)的NeuA酶(GenBank No. AMK07891.1)以及表現一或多個複製的β-半乳糖苷α-2,3-唾液酸轉移酶(例如,來自出血性巴氏桿菌的PmultST3(UniProt ID Q9CLP3)或由具有β-半乳糖苷α-2,3-唾液酸轉移酶活性的UniProt ID Q9CLP3的1至268胺基酸殘基所組成的PmultST3樣多肽、來自腦膜炎雙球菌的NmeniST3(GenBank No. ARC07984.1)或來自出血性巴氏桿菌出血性亞種菌株( P. multocida subsp. multocidastr.)Pm70的PmultST2(GenBank No. AAK02592.1))、β-半乳糖苷 α-2,6-唾液酸轉移酶(例如,來自海鱺發光桿菌( Photobacterium damselae)的PdST6(UniProt ID O66375)或由具有β-半乳糖苷 α-2,6-唾液酸轉移酶活性的UniProt ID O66375的108至497胺基酸殘基所組成的PdST6樣多肽或來自發光桿菌屬JT-ISH-224的P-JT-ISH-224-ST6(UniProt ID A8QYL1)或由具有β-半乳糖苷 α-2,6-唾液酸轉移酶活性的UniProt ID A8QYL1的18至514胺基酸殘基所組成的P-JT-ISH-224-ST6樣多肽)及/或α-2,8-唾液酸轉移酶(例如,來自小鼠(UniProt ID Q64689))。N-醯基神經胺酸胞苷醯轉移酶及唾液酸轉移酶的持續型轉錄單元可經由基因敲入或表現質體傳遞給突變株。若產生唾液酸及CMP-唾液酸的突變株旨在使乳糖結構唾液酸化,則該菌株藉由基因剃除大腸桿菌 LacZ、 LacY和 LacA基因以及基因組敲入乳糖通透酶的持續型轉錄單元(例如,大腸桿菌LacY(UniProt ID P02920))進行額外修飾。產生唾液酸、CMP-唾液酸及/或唾液酸化寡醣的所有突變株可選擇性地經由含有蔗糖轉運體(例如,源自大腸桿菌W的CscB(UniProt ID E0IXR1))、果糖激酶(例如,來自運動醱酵單胞菌的Frk(UniProt ID Q03417))及蔗糖磷酸化酶(例如,來自青春雙歧桿菌的BaSP(UniProt ID A0ZZH6))的持續型轉錄單元的基因敲入來適應在蔗糖上的生長。 For sialylated oligosaccharide production, the sialic acid producing strain was further modified to express N-acylneuraminate cytidylyltransferase (eg, NeuA enzyme from Aspergillus jejuni (UniProt ID Q93MP7) , NeuA enzyme (GenBank No. AGV11798.1) from Haemophilus influenzae (GenBank No. AGV11798.1) or NeuA enzyme (GenBank No. AMK07891.1) from Pasteurella multocida and expressing one or more replications β-galactoside α-2,3-sialyltransferase (eg, PmultST3 from Pasteurella haemorrhagic (UniProt ID Q9CLP3) or by a β-galactoside α-2,3-sialyltransferase PmultST3-like polypeptide consisting of amino acid residues 1 to 268 of active UniProt ID Q9CLP3, NmeniST3 from Neisseria meningitidis (GenBank No. ARC07984.1 ) or from Pasteurella hemorrhagic subsp. . multocida subsp. multocida str.) PmultST2 of Pm70 (GenBank No. AAK02592.1)), β-galactoside α-2,6-sialyltransferase (eg, PdST6 from Photobacterium damselae ) (UniProt ID O66375) or a PdST6-like polypeptide consisting of amino acid residues 108 to 497 of UniProt ID O66375 with β-galactoside α-2,6-sialyltransferase activity or from Photobacterium JT- P-JT-ISH-224-ST6 of ISH-224 (UniProt ID A8QYL1) or amino acid residues 18 to 514 of UniProt ID A8QYL1 with β-galactoside α-2,6-sialyltransferase activity composed of P-JT-ISH-224-ST6-like polypeptide) and/or α-2,8-sialyltransferase (eg, from mouse (UniProt ID Q64689). N-Acyl neuraminic acid cytidine The persistent transcription units of acyltransferase and sialyltransferase can be delivered to mutant strains by knock-in or expressing plastids. If mutants producing sialic acid and CMP-sialic acid are designed to sialylate the lactose structure, the strain By genetically shaving the E. coli LacZ , LacY , and LacA genes and by genomically knocking in the continuous transcription unit of lactose permease (e.g., E. coli LacY (UniProt ID). P02920)) for additional modifications. All mutants producing sialic acid, CMP-sialic acid, and/or sialylated oligosaccharides are selectively mediated via a sucrose transporter (e.g., CscB derived from E. coli W (UniProt ID E0IXR1)), fructokinase (e.g., Knock-in of persistent transcription units from Z. mobilis Frk (UniProt ID Q03417)) and sucrose phosphorylase (eg, BaSP from B. adolescentis (UniProt ID A0ZZH6)) adapted to sucrose growth.
或者,及/或另外,唾液酸及/或唾液酸化寡醣產生可進一步藉由包括持續型轉錄單元的持續型轉錄單元之基因敲入使突變大腸桿菌株優化,該膜轉運蛋白例如為唾液酸轉運體,例如來自大腸桿菌K-12 MG1655的nanT(UniProt ID P41036)、來自大腸桿菌O6:H1的nanT(UniProt ID Q8FD59)、來自大腸桿菌O157:H7的nanT(UniProt ID Q8X9G8)或來自艾伯特埃希菌( E. albertii)的nanT(UniProt ID B1EFH1)、或者為運輸蛋白,例如來自大腸桿菌的EntS(UniProt ID P24077)、來自抗壞血酸克呂沃爾氏菌( Kluyvera ascorbata)的EntS(UniProt ID A0A378GQ13)、來自腸道沙門桿菌亞利桑那亞種( Salmonella enterica subsp. arizonae)的EntS(UniProt ID A0A6Y2K4E8)、來自阪崎腸桿菌的MdfA(UniProt ID A0A2T7ANQ9)、來自楊氏檸檬酸桿菌的的MdfA(UniProt ID D4BC23)、來自大腸桿菌的MdfA(UniProt ID P0AEY8)、來自肺炎克雷伯氏菌的MdfA(UniProt ID G9Z5F4)、來自大腸桿菌的iceT(UniProt ID A0A024L207)、來自楊氏檸檬酸桿菌的iceT(UniProt ID D4B8A6)、來自大腸桿菌的SetA(UniProt ID P31675)、來自大腸桿菌的SetB(UniProt ID P33026)或來自大腸桿菌的SetC(UniProt ID P31436)、或者為ABC轉運體,例如來自大腸桿菌的oppF(UniProt ID P77737)、來自乳酸乳球菌乳酸亞種雙乙醯生物突變株的lmrA(UniProt ID A0A1V0NEL4)、或來自雙叉乳桿菌嬰兒亞種的Blon_2475(UniProt ID B7GPD4)。 Alternatively, and/or additionally, sialic acid and/or sialylated oligosaccharide production can be further optimized for mutant E. coli strains by gene knock-in of a persistent transcription unit including a continuous transcription unit, such as a membrane transporter such as sialic acid Transporters such as nanT from E. coli K-12 MG1655 (UniProt ID P41036), nanT from E. coli O6:H1 (UniProt ID Q8FD59), nanT from E. coli O157:H7 (UniProt ID Q8X9G8) or from E. coli nanT from E. albertii (UniProt ID B1EFH1), or transport proteins such as EntS from E. coli (UniProt ID P24077), EntS from Kluyvera ascorbata (UniProt ID A0A378GQ13), EntS from Salmonella enterica subsp. arizonae (UniProt ID A0A6Y2K4E8), MdfA from Enterobacter sakazakii (UniProt ID A0A2T7ANQ9), MdfA from Citrobacter johnsonii ( UniProt ID D4BC23), MdfA from Escherichia coli (UniProt ID P0AEY8), MdfA from Klebsiella pneumoniae (UniProt ID G9Z5F4), iceT from Escherichia coli (UniProt ID A0A024L207), iceT from Citrobacter japonicus (UniProt ID D4B8A6), SetA from E. coli (UniProt ID P31675), SetB from E. coli (UniProt ID P33026) or SetC from E. coli (UniProt ID P31436), or an ABC transporter such as from E. coli oppF (UniProt ID P77737), lmrA (UniProt ID A0A1V0NEL4) from Lactococcus lactis subsp. lactis diacetate biomutant, or Blon_2475 (UniProt ID B7GPD4) from Lactobacillus bifidum subsp. infantis.
在用於促進UDP-半乳糖產生的實施例中,大腸桿菌K12 MG1655菌株藉由將大腸桿菌 ushA、 galT、 ldhA及 agp基因中的一或多種之基因剃除並藉由大腸桿菌的UDP-葡萄糖-4-表異構酶(galE)(UniProt ID P09147)的持續型表現建構體之基因敲入進行修飾。 In an example used to promote UDP-galactose production, the E. coli K12 MG1655 strain was transformed by shaving the genes of one or more of the E. coli ushA , galT , ldhA and agp genes and by E. coli UDP-glucose - Gene knock-in modification of a persistent expression construct of 4-epimerase (galE) (UniProt ID P09147).
在用於促進UDP-GlcNAc產生的實施例中,大腸桿菌K12 MG1655菌株藉由將L-麩醯胺—D-果糖-6-磷酸轉胺酶(例如來自大腸桿菌的突變體glmS*54(其不同於UniProt ID P17169的野生型大腸桿菌glmS蛋白質具有A39T、R250C及G472S突變,如Deng等人所述(Biochimie 2006, 88: 419-429)))的持續型轉錄單元之基因敲入進行修飾。In an example for promoting UDP-GlcNAc production, the E. coli K12 MG1655 strain was treated with L-glutamine-D-fructose-6-phosphate transaminase (such as mutant glmS*54 from E. coli, which The wild-type E. coli glmS protein, which differs from UniProt ID P17169, has the A39T, R250C and G472S mutations, modified by knock-in of the persistent transcription unit as described by Deng et al. (Biochimie 2006, 88: 419-429).
在用於產生乳-N-三糖(LN3,GlcNAc-b1,3-Gal-b1,4-Glc)的實施例中,突變菌株衍生自大腸桿菌K12 MG1655並藉由將大腸桿菌 lacZ、 lacY、 lacA及 nagB基因剃除以及藉由乳糖通透酶(例如,大腸桿菌LacY(UniProt ID P02920))及半乳糖苷β-1,3-N-乙醯基葡糖胺轉移酶(例如,來自腦膜炎雙球菌的lgtA(UniProt ID Q9JXQ6))的持續型轉錄單元之基因敲入進行修飾。 In the example for the production of lacto-N-trisaccharide (LN3, GlcNAc-b1,3-Gal-b1,4-Glc), the mutant strain was derived from E. coli K12 MG1655 and obtained by combining E. coli lacZ , lacY , The lacA and nagB genes are shaving off and expressed by lactose permease (eg, Escherichia coli LacY (UniProt ID P02920)) and galactoside β-1,3-N-acetylglucosaminyltransferase (eg, from meninges The gene knock-in modification of the persistent transcription unit of IgtA (UniProt ID Q9JXQ6) of Neisseria pyogenes.
在用於產生LN3衍生的寡醣(例如,乳-N-四糖)(LNT,Gal-b1,3-GlcNAc-b1,3-Gal-b1,4-Glc)之實施例中,突變的LN3產生菌株進一步以經由N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶(例如,來自大腸桿菌O55:H7的具有SEQ ID NO 03的wbgO)的基因敲入或形成表現質體而將持續型轉錄單元遞送至菌株的方式進行修飾。In an example for the production of LN3-derived oligosaccharides (eg, lacto-N-tetrasaccharide) (LNT, Gal-b1,3-GlcNAc-b1,3-Gal-b1,4-Glc), mutated LN3 The production strain is further transformed by gene knock-in via N-acetylglucosamine β-1,3-galactosyltransferase (eg, wbgO with SEQ ID NO 03 from E. coli 055:H7) or by the formation of expression plastids. Modifications are made in the manner in which the persistent transcription unit is delivered to the strain.
在用於產生LN3衍生的寡醣(例如,乳-N-新四糖)(LNnT,Gal-b1,4-GlcNAc-b1,3-Gal-b1,4-Glc)之實施例中,突變的LN3產生菌株進一步以經由N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶(例如,來自腦膜炎雙球菌的具有SEQ ID NO 15的lgtB)的基因敲入或形成表現質體而將持續型轉錄單元遞送至菌株的方式進行修飾。In an example for the production of LN3-derived oligosaccharides (eg, lacto-N-neotetraose) (LNnT, Gal-b1,4-GlcNAc-b1,3-Gal-b1,4-Glc), the mutated The LN3-producing strain is further characterized by gene knock-in via N-acetylglucosamine β-1,4-galactosyltransferase (eg, lgtB with SEQ ID NO 15 from Neisseria meningitidis) or the formation of expression plastids. Modifications are made in the manner in which the persistent transcription unit is delivered to the strain.
在用於產生乳-N-雙糖(LNB,Gal-b1,3-GlcNAc)及LNB衍生的寡醣之實施例中,菌株進一步經由針對一或多個複製的N-乙醯葡萄糖胺-6-磷酸轉移酶(例如,來自啤酒酵母菌的GNA1(UniProt ID P43577))及N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶(選自包括來自SEQ ID NO:03、04、05、06、07、08、10、11、12及13之項次)的基因敲入或包含持續型轉錄單元的表現質體進行修飾。In an example for the production of lacto-N-bisaccharide (LNB, Gal-b1,3-GlcNAc) and LNB-derived oligosaccharides, the strains were further modified by N-acetylglucosamine-6 for one or more replications - Phosphotransferase (eg, GNA1 from Saccharomyces cerevisiae (UniProt ID P43577)) and N-acetylglucosamine beta-1,3-galactosyltransferase (selected from including from SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12, and 13) gene knock-in or modified expression plasmids containing persistent transcription units.
在用於產生N-乙醯乳糖胺(LacNAc,Gal-b1,4-GlcNAc)及LacNAc衍生的寡醣之實施例中,菌株進一步經由針對一或多個複製的N-乙醯葡萄糖胺-6-磷酸轉移酶(例如,來自啤酒酵母菌的GNA1(UniProt ID P43577))及N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶(選自包括來自SEQ ID NO:15、16、17、18、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40或41之項次)的基因敲入或包含持續型轉錄單元的表現質體進行修飾。In the examples for the production of N-acetyllactosamine (LacNAc, Gal-b1,4-GlcNAc) and LacNAc-derived oligosaccharides, the strains were further modified by N-acetylglucosamine-6 for one or more replications - Phosphotransferases (eg, GNA1 from Saccharomyces cerevisiae (UniProt ID P43577)) and N-acetylglucosamine beta-1,4-galactosyltransferases (selected from including from SEQ ID NO: 15, 16, 17, 18, 20, 21, 22, 23, 26, 27, 28, 31, 32, 33, 34, 35, 36, 39, 40, or 41) knock-in or containing a persistent transcription unit Expression plastids are modified.
突變體LNB、LacNAc、LN3、LNT及LNnT產生大腸桿菌菌株亦可選擇性地經由含有蔗糖轉運體(例如,源自大腸桿菌W的CscB(UniProt ID E0IXR1))、果糖激酶(例如,來自運動醱酵單胞菌的Frk(UniProt ID Q03417))及蔗糖磷酸化酶(例如,來自青春雙歧桿菌的BaSP(UniProt ID A0ZZH6))的持續型轉錄單元的基因敲入來適應在蔗糖上的生長。Mutant LNB, LacNAc, LN3, LNT, and LNnT-producing E. coli strains can also selectively via sucrose transporters (e.g., CscB from E. coli W (UniProt ID E0IXR1)), fructokinase (e.g., from locomotor) Zymomonas Frk (UniProt ID Q03417)) and sucrose phosphorylase (eg, BaSP from Bifidobacterium adolescentis (UniProt ID A0ZZH6)) were knocked in for growth on sucrose.
或者,及/或另外,LN3、LNT、LNnT、LNB及LacNAc及其衍生的寡醣之產生可藉由持續型轉錄單元的基因敲入而在突變大腸桿菌菌株中進一步優化,該轉錄單元包含膜轉運蛋白,例如來自阪崎腸桿菌的MdfA(UniProt ID A0A2T7ANQ9)、來自楊氏檸檬酸桿菌的的MdfA(UniProt ID D4BC23)、來自大腸桿菌的MdfA(UniProt ID P0AEY8)、來自肺炎克雷伯氏菌的MdfA(UniProt ID G9Z5F4)、來自大腸桿菌的iceT(UniProt ID A0A024L207)或來自楊氏檸檬酸桿菌的iceT(UniProt ID D4B8A6)。Alternatively, and/or additionally, the production of LN3, LNT, LNnT, LNB and LacNAc and their derived oligosaccharides can be further optimized in mutant E. coli strains by gene knock-in of a persistent transcription unit comprising a membrane Transporters such as MdfA from Enterobacter sakazakii (UniProt ID A0A2T7ANQ9), MdfA from Citrobacter johnsonii (UniProt ID D4BC23), MdfA from Escherichia coli (UniProt ID P0AEY8), Klebsiella pneumoniae MdfA (UniProt ID G9Z5F4), iceT from Escherichia coli (UniProt ID A0A024L207) or iceT from Citrobacter japonicus (UniProt ID D4B8A6).
較佳但並非必須,醣基轉移酶、核苷酸活性糖合成的蛋白質及/或膜轉運蛋白中的任一或多種在N-和/或C-端融合至溶解度強化子標籤,例如例如SUMO標籤、MBP標籤、His、FLAG、Strep-II、Halo-tag、NusA、硫氧還蛋白(thioredoxin)、GST及/Fh8標籤,以提高其溶解度(Costa et al., Front. Microbiol. 2014, https://doi.org/10.3389/fmicb.2014.00063; Fox et al., Protein Sci. 2001, 10(3), 622-630; Jia and Jeaon, Open Biol. 2016, 6: 160196)。Preferably, but not necessarily, any one or more of glycosyltransferases, nucleotide-active sugar-synthesizing proteins, and/or membrane transporters are fused at the N- and/or C-terminus to a solubility enhancer tag, e.g., SUMO tags, MBP tags, His, FLAG, Strep-II, Halo-tag, NusA, thioredoxin, GST and /Fh8 tags to improve their solubility (Costa et al., Front. Microbiol. 2014, https ://doi.org/10.3389/fmicb.2014.00063; Fox et al., Protein Sci. 2001, 10(3), 622-630; Jia and Jeaon, Open Biol. 2016, 6: 160196).
可選地,突變大腸桿菌菌株藉由持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元編碼伴護蛋白(chaperone protein)(例如,DnaK、DnaJ、GrpE或the GroEL/ES伴護蛋白系統(chaperonin system)(Baneyx F., Palumbo J.L. (2003) Improving Heterologous Protein Folding via Molecular Chaperone and Foldase Co-Expression. In: Vaillancourt P.E. (eds) E. coli Gene Expression Protocols. Methods in Molecular Biology™, vol 205. Humana Press)。Alternatively, mutant E. coli strains are modified by gene knock-in of a persistent transcription unit encoding a chaperone protein (e.g., DnaK, DnaJ, GrpE, or the GroEL/ES chaperone protein). The chaperonin system (Baneyx F., Palumbo J.L. (2003) Improving Heterologous Protein Folding via Molecular Chaperone and Foldase Co-Expression. In: Vaillancourt P.E. (eds) E. coli Gene Expression Protocols. Methods in Molecular Biology™, vol 205 . Humana Press).
可選地,突變大腸桿菌菌株進行修飾以製造醣最小化大腸桿菌菌株,其包含非必須醣基轉移酶基因的任一或多種的基因剃除,該非必須醣基轉移酶基因包括pgaC、pgaD、rfe、rffT、rffM、bcsA、bcsB、bcsC、wcaA、wcaC、wcaE、wcaI、wcaJ、wcaL、waaH、waaF、waaC、waaU、waaZ、waaJ、waaO、waaB、waaS、waaG、waaQ、wbbl、arnC、arnT、yfdH、wbbK、opgG、opgH、ycjM、glgA、glgB、malQ、otsA及yaiP。Alternatively, the mutant E. coli strain is modified to produce a sugar-minimized E. coli strain comprising genetic shaving of any one or more of the non-essential glycosyltransferase genes, including pgaC, pgaD, rfe, rffT, rffM, bcsA, bcsB, bcsC, wcaA, wcaC, wcaE, wcaI, wcaJ, wcaL, waaH, waaF, waaC, waaU, waaZ, waaJ, waaO, waaB, waaS, waaG, waaQ, wbbl, arnC, arnT, yfdH, wbbK, opgG, opgH, ycjM, glgA, glgB, malQ, otsA, and yaiP.
所有持續型啟動子及UTRs均源自De Mey等人(BMC Biotechnology, 2007)、Dunn等人(Nucleic Acids Res. 1980, 8(10), 2119-2132)、Kim和Lee(FEBS letters 1997, 407(3), 353-356)、以及Mutalik等人(Nat. Methods 2013, No. 10, 354-360)描述的資料庫。All persistent promoters and UTRs are derived from De Mey et al. (BMC Biotechnology, 2007), Dunn et al. (Nucleic Acids Res. 1980, 8(10), 2119-2132), Kim and Lee (FEBS letters 1997, 407) (3), 353-356), and the database described by Mutalik et al. (Nat. Methods 2013, No. 10, 354-360).
本發明所述的SEQ ID NO總結於表1。The SEQ ID NOs described in the present invention are summarized in Table 1.
所有基因均在Twist Bioscience(twistbioscience.com)或IDT(eu.idtdna.com)合成訂購,並使用供應商的工具調整密碼子使用。All genes were ordered synthetically at Twist Bioscience (twistbioscience.com) or IDT (eu.idtdna.com) and codon usage was adjusted using the vendor's tools.
所有菌株都儲存在-80℃的冷凍小瓶中(過夜LB培養物與70%甘油按1:1比率混合)。All strains were stored in frozen vials (overnight LB cultures mixed with 70% glycerol in a 1:1 ratio) at -80°C.
表1:本發明中描述的SEQ ID NO的概述
培養條件Culture conditions
從冷凍小瓶開始96孔微量滴定盤實驗的預培養,在150μL LB中並於37℃在800rpm的軌道振盪器上培養過夜。將該培養物用作96孔方形微量滴定盤的接種物,用400μL MMsf培養基稀釋400倍。然後將這些最終的96孔培養盤於37℃在800rpm的軌道振盪器上培養72h或更短或更長時間。為了在培養實驗結束時測定糖濃度,藉由將細胞離心之前將培養液於60℃煮沸15分鐘,從每個孔中取出全肉湯樣品(=細胞內和細胞外的糖濃度平均值)。Pre-incubation of 96-well microtiter plate experiments was initiated from frozen vials in 150 μL of LB overnight at 37°C on an orbital shaker at 800 rpm. This culture was used as an inoculum in a 96-well square microtiter plate, diluted 400-fold with 400 μL of MMsf medium. These final 96-well plates were then incubated at 37°C on an orbital shaker at 800 rpm for 72 h or less or longer. To determine the sugar concentration at the end of the culture experiment, a whole broth sample (=intracellular and extracellular sugar concentration average) was taken from each well by boiling the medium at 60°C for 15 minutes before centrifuging the cells.
生物反應器的預培養從特定菌株的整個1mL冷凍小瓶開始,接種在1L或2.5L搖瓶中的250mL或500mL MMsf培養基中,並於37℃在200rpm的軌道振盪器上培養24h。然後接種5L生物反應器(在2L批次培養基中接種250mL);該過程由MFCS控制軟體(Sartorius StedimBiotech,Melsungen,德國)控制。培養條件設置為37℃,最大攪拌;壓力氣體流速取決於菌株和生物反應器。使用0.5M H2SO4和20%NH4OH將pH控制在6.8。冷卻廢氣。發酵過程中發泡時加入10%的有機矽消泡劑溶液。Bioreactor precultures were started from whole 1 mL cryovials of specific strains, inoculated in 250 mL or 500 mL MMsf medium in 1 L or 2.5 L shake flasks, and grown at 37°C for 24 h on an orbital shaker at 200 rpm. A 5 L bioreactor was then inoculated (250 mL in 2 L batch medium); the process was controlled by MFCS control software (Sartorius StedimBiotech, Melsungen, Germany). Culture conditions were set at 37°C with maximum agitation; pressure gas flow rate was dependent on strain and bioreactor. The pH was controlled at 6.8 using 0.5M H2SO4 and 20% NH4OH. Cool the exhaust gas. Add 10% organosilicon defoamer solution when foaming during fermentation.
光密度Optical density
藉由測定600nm處的光密度(Implen Nanophotometer NP80,Westburg,比利時或Spark 10M微孔盤讀取器,Tecan,瑞士)經常監測培養物的細胞密度。Cultures were frequently monitored for cell density by measuring optical density at 600 nm (Implen Nanophotometer NP80, Westburg, Belgium or Spark 10M Microplate Reader, Tecan, Switzerland).
分析性解析Analytical analysis
標準品,例如但不限於,蔗糖、葡萄糖、N-乙醯葡萄糖胺、N-乙醯乳糖胺、乳-N-雙糖、岩藻糖基化 N-乙醯乳糖胺(2’FLAcNAc、3-FlacNAc)、岩藻糖基化乳-N-雙糖(2’FLNB、4-FLNB)、唾液酸化N-乙醯乳糖胺(3’SLacNAc、6’SLacNAc)購自Carbosynth(英國)、Elicityl(法國)及IsoSep(瑞典)。其他化合物使用內部製定的標準進行分析。Standards such as, but not limited to, sucrose, glucose, N-acetylglucosamine, N-acetyllactosamine, lacto-N-disaccharide, fucosylated N-acetyllactosamine (2'FLAcNAc, 3 -FlacNAc), fucosylated lacto-N-disaccharides (2'FLNB, 4-FLNB), sialylated N-acetyllactosamine (3'SLacNAc, 6'SLacNAc) were purchased from Carbosynth (UK), Elicityl (France) and IsoSep (Sweden). Other compounds were analyzed using in-house developed standards.
N-乙醯葡萄糖胺及N-乙醯乳糖胺在Dionex HPAEC系統上使用脈衝安培檢測(PAD)進行分析。將5µL樣品注射到Dionex CarboPac PA1管柱4x250mm與Dionex CarboPac PA1保護管柱4 x 50mm。 管柱溫度為20°C。使用3種溶析液進行分離:A)去離子水、B)200 mM氫氧化鈉、以及C)500mM 乙酸鈉。溶析曲線如下應用:0-10分鐘50% A和50% B;10-18分鐘50-44%A和50%B;18-28分鐘 44%A和50%B; 28-32分鐘 44-30.8%A和50%B;32-39分鐘 30.8%A和50%B;39-40分鐘30.8-2%A和50%B;40-43分鐘2%A和50%B;43-44分鐘2-50%A和50%B;44-50分鐘50%A和50%B。流速為1.0mL/min。N-acetylglucosamine and N-acetyllactosamine were analyzed using pulsed amperometric detection (PAD) on the Dionex HPAEC system. Inject 5 µL of sample into Dionex CarboPac PA1 Column 4x250mm and Dionex CarboPac PA1 Guard Column 4x50mm. The column temperature was 20°C. The separation was performed using 3 eluates: A) deionized water, B) 200 mM sodium hydroxide, and C) 500 mM sodium acetate. The dissolution profiles were applied as follows: 0-10 minutes 50% A and 50% B; 10-18 minutes 50-44% A and 50% B; 18-28 minutes 44% A and 50% B; 28-32 minutes 44- 30.8%A and 50%B; 32-39 minutes 30.8%A and 50%B; 39-40 minutes 30.8-2%A and 50%B; 40-43 minutes 2%A and 50%B; 43-44 minutes 2-50%A and 50%B; 44-50 minutes 50%A and 50%B. The flow rate was 1.0 mL/min.
N-乙醯葡萄糖胺、N-乙醯乳糖胺、乳-N-雙糖、岩藻糖基化N-乙醯乳糖胺、及岩藻糖基化LNB在配有蒸發光散射檢測器(ELSD)或折射率(RI)檢測器的Waters Acquity H級UPLC上進行分析。將體積0.7µL的樣品注入Waters Acquity UPLC BEH Amide 管柱(2.1 x 100mm;130Å;1.7 µm)和配有Acquity UPLC BEH Amide VanGuard管柱,130Å,2.1x 5mm。管柱溫度為50°C。移動相由¼水和 ¾乙腈溶液組成,並添加了0.2%三乙胺。該方法是以流速為0.130mL/min進行等度。ELS檢測器的漂移管溫度為50°C,N 2氣壓為50 psi,增益為200,數據速率為10pps。RI檢測器的溫度設為35°C。 N-acetylglucosamine, N-acetyllactosamine, lacto-N-disaccharide, fucosylated N-acetyllactosamine, and fucosylated LNB with evaporative light scattering detector (ELSD) ) or on a Waters Acquity H-stage UPLC with a Refractive Index (RI) detector. A volume of 0.7 µL of the sample was injected onto a Waters Acquity UPLC BEH Amide column (2.1 x 100mm; 130Å; 1.7 µm) and an Acquity UPLC BEH Amide VanGuard column, 130Å, 2.1x 5mm. The column temperature was 50°C. The mobile phase consisted of ¼ water and ¾ acetonitrile solution with addition of 0.2% triethylamine. The method is isocratic at a flow rate of 0.130 mL/min. The drift tube temperature of the ELS detector was 50°C, the N gas pressure was 50 psi, the gain was 200 , and the data rate was 10pps. The temperature of the RI detector was set to 35°C.
唾液酸化N-乙醯乳糖胺及唾液酸化乳-N-雙糖以配有折射率(RI)檢測器的Waters Acquity H級UPLC上進行分析。將體積0.5 µL的樣品注入具有移動相之Waters Acquity UPLC BEH Amide 管柱(具有1.7 µm粒徑的2.1 x 100mm),該移動相包含70 mL乙腈、26 mL 超純水中的150 mM乙酸銨以及4 mL添加有0.05%吡咯啶的甲醇。該方法是以流速為0.150mL/min進行等度。管柱溫度設為50°C。Sialylated N-acetyllactosamine and sialylated lacto-N-disaccharide were analyzed on a Waters Acquity H-stage UPLC equipped with a refractive index (RI) detector. A volume of 0.5 µL of sample was injected into a Waters Acquity UPLC BEH Amide column (2.1 x 100 mm with 1.7 µm particle size) with a mobile phase containing 70 mL of acetonitrile, 150 mM ammonium acetate in 26 mL of ultrapure water, and 4 mL was added with 0.05% pyrrolidine in methanol. The method is isocratic at a flow rate of 0.150 mL/min. The column temperature was set to 50°C.
在Dionex HPAEC系統上使用脈衝安培檢測(PAD)分析低濃度(低於50 mg/L)的糖。將體積5 µL的樣品注入Dionex CarboPac PA200管柱4 x 250 mm和 Dionex CarboPac PA200保護柱4 x 50 mm。管柱溫度設為30°C。使用梯度,其中溶析液A是去離子水,其中溶析液B是200mM氫氧化鈉並且其中溶析液C是500mM乙酸鈉。寡醣在60分鐘內分離,同時使用以下梯度保持25%的溶析液B的恆定比例:初始等度步驟將75%的溶析液A保持10分鐘,在8分鐘內初始增加溶析液C從0到4%,第二等度步驟將71%的溶析液A和4%的溶析液C保持6分鐘,在2.6分鐘內第二次增加溶析液C從4%到12%,第三等度步驟將63%溶析液A和12%的溶析液C保持3.4分鐘,在5分鐘內第三次增加溶析液C從12%到48%。作為洗滌步驟,使用48%的溶析液C洗滌3分鐘。對於管柱平衡,75%的溶析液A和0%的溶析液C的初始條件在1分鐘內恢復並保持11分鐘。施加的流速為0.5mL/min。Low concentrations (below 50 mg/L) of sugars were analyzed using pulsed amperometric detection (PAD) on the Dionex HPAEC system. A volume of 5 µL of sample was injected into a Dionex CarboPac PA200 column 4 x 250 mm and a Dionex CarboPac PA200 guard column 4 x 50 mm. The column temperature was set to 30°C. A gradient was used where eluent A was deionized water, where eluent B was 200 mM sodium hydroxide and where eluent C was 500 mM sodium acetate. Oligosaccharides were separated in 60 min while maintaining a constant ratio of 25% eluent B using the following gradient: an initial isocratic step with 75% eluent A for 10 min and an initial increase in eluent C over 8 min From 0 to 4%, the second isocratic step holds 71% of eluent A and 4% of eluant C for 6 minutes, and a second increase of eluent C from 4% to 12% in 2.6 minutes, The third isocratic step held 63% eluate A and 12% eluate C for 3.4 minutes, with a third increase in eluate C from 12% to 48% in 5 minutes. As a washing step, 48% solution C was used to wash for 3 minutes. For column equilibration, the initial conditions of 75% eluent A and 0% eluent C were recovered within 1 minute and held for 11 minutes. The applied flow rate was 0.5 mL/min.
數據的標準化data normalization
對於所有類型的培養條件,從突變菌株獲得的數據針對在與參考菌株相同的培養條件下獲得的數據進行標準化。For all types of culture conditions, data obtained from mutant strains were normalized to data obtained under the same culture conditions as the reference strain.
實施例Example 22 :經修飾的大腸桿菌宿主中: in a modified E. coli host GlcNAcGlcNAc 的產生generation
在此實施例中,首先,野生型大腸桿菌K-12 MG1655可藉由同源大腸桿菌N-乙醯葡萄糖胺-6-磷酸鹽去乙醯酶( nagA)基因及大腸桿菌葡萄糖胺-6-磷酸鹽脫胺酶( nagB)基因的剔除進行修飾,接著以表現質體進一步轉形,該表現質體包括來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)的持續型表現匣。當根據實施例1中的培養條件(其中培養基含有甘油)在生長實驗中進行評估時,由此獲得的突變大腸桿菌菌株在全肉湯樣品中產生GlcNAc。 In this example, first, wild-type E. coli K-12 MG1655 can be identified by homologous E. coli N-acetylglucosamine-6-phosphate deacetylase ( nagA ) gene and E. coli glucosamine-6- Modification by knockout of the phosphate deaminase ( nagB ) gene, followed by further transformation with expression plastids including N-acetylglucosamine-6-phosphotransferase GNA1 from Saccharomyces cerevisiae (UniProt ID P43577 ) of the persistent performance box. The mutant E. coli strains thus obtained produced GlcNAc in whole broth samples when evaluated in growth experiments according to the culture conditions in Example 1, wherein the medium contained glycerol.
實施例Example 33 :經修飾的大腸桿菌宿主中: in a modified E. coli host GlcNAcGlcNAc 的產生generation
如實施例2所述的經修飾以產生GlcNAc之突變大腸桿菌菌株可進一步以第二相容表現質體進行轉形,該第二相容表現質體包括來自大腸桿菌的L-麩醯胺—D-果糖-6-磷酸轉胺酶glmS*54的突變變體的持續型表現匣,該突變變體與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變,如Deng等人所述(Biochimie 2006: 88, 419-429)。當根據實施例1中的培養條件(其中培養基含有甘油)在生長實驗中進行評估時,新穎菌株亦在全肉湯樣品中產生GlcNAc,且在該菌株中所獲得的GlcNAc力價高於在實施例2產生且缺乏突變glmS*54的突變菌株所獲得的GlcNAc力價。Mutant E. coli strains modified to produce GlcNAc as described in Example 2 can be further transformed with a second compatible expression plastid comprising L-glutamine from E. coli— Persistent expression cassette of a mutant variant of the D-fructose-6-phosphate transaminase glmS*54, which differs from the wild-type glmS protein (UniProt ID P17169) by the A39T, R250C and G472S mutations, as described in Deng et al. described (Biochimie 2006: 88, 419-429). The novel strain also produced GlcNAc in whole broth samples when evaluated in growth experiments according to the culture conditions in Example 1 (wherein the medium contained glycerol), and the GlcNAc titers obtained in this strain were higher than those obtained in the GlcNAc titers obtained from mutant strains generated in Example 2 and lacking mutant glmS*54.
實施例Example 44 :經修飾的大腸桿菌宿主中: in a modified E. coli host GlcNAcGlcNAc 的產生generation
野生型大腸桿菌K-12 MG1655可藉由大腸桿菌 nagA及 nagB基因的剔除及來自啤酒酵母菌的GNA1(UniProt ID P43577)之持續型表現匣的基因敲入進行修飾。當根據實施例1中的培養條件(其中培養基含有甘油)在生長實驗中進行評估時,由此獲得的突變大腸桿菌菌株在全肉湯樣品中產生GlcNAc。 Wild-type E. coli K-12 MG1655 was modified by deletion of the E. coli nagA and nagB genes and knock-in of a persistent cassette of GNA1 (UniProt ID P43577) from Saccharomyces cerevisiae. The mutant E. coli strains thus obtained produced GlcNAc in whole broth samples when evaluated in growth experiments according to the culture conditions in Example 1, wherein the medium contained glycerol.
實施例Example 55 :經修飾的大腸桿菌宿主中: in a modified E. coli host GlcNAcGlcNAc 的產生generation
如實施例4所述的經修飾以產生GlcNAc之突變大腸桿菌菌株可進一步以表現質體進行轉形,該表現質體包括來自大腸桿菌的glmS*54的持續型表現匣,該glmS*54與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變,如Deng等人所述(Biochimie 2006: 88, 419-429)。當根據實施例1中的培養條件(其中培養基含有甘油)在生長實驗中進行評估時,新穎菌株亦在全肉湯樣品中產生GlcNAc,且在此菌株中所獲得的GlcNAc力價高於在實施例4產生且缺乏突變glmS*54的突變菌株所獲得的GlcNAc力價。Mutant E. coli strains modified to produce GlcNAc as described in Example 4 can be further transformed with an expression plastid comprising a persistent expression cassette of glmS*54 from E. coli, which is combined with The wild-type glmS protein (UniProt ID P17169) differs by the A39T, R250C and G472S mutations as described by Deng et al. (Biochimie 2006: 88, 419-429). The novel strain also produced GlcNAc in whole broth samples when evaluated in growth experiments according to the culture conditions in Example 1 (wherein the medium contained glycerol), and the GlcNAc titers obtained in this strain were higher than those obtained in the GlcNAc titers obtained from mutant strains generated in Example 4 and lacking mutant glmS*54.
實施例Example 66 :經修飾的大腸桿菌宿主中: in a modified E. coli host GlcNAcGlcNAc 的產生generation
如實施例4所述的經修飾以產生GlcNAc之突變大腸桿菌菌株可進一步以包括來自大腸桿菌的glmS*54之持續型表現匣之基因敲入進行轉形,該glmS*54與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變,如Deng等人所述(Biochimie 2006: 88, 419-429)。當根據實施例1中的培養條件(其中培養基含有甘油)在生長實驗中進行評估時,新穎菌株亦在全肉湯樣品中產生GlcNAc,且在此菌株中所獲得的GlcNAc力價高於在實施例4產生且缺乏突變glmS*54的突變菌株所獲得的GlcNAc力價。Mutant E. coli strains modified to produce GlcNAc as described in Example 4 can be further transformed with a gene knock-in comprising a persistent expression cassette of glmS*54 from E. coli, which is combined with the wild-type glmS protein (UniProt ID P17169) differed by the A39T, R250C and G472S mutations as described by Deng et al. (Biochimie 2006: 88, 419-429). The novel strain also produced GlcNAc in whole broth samples when evaluated in growth experiments according to the culture conditions in Example 1 (wherein the medium contained glycerol), and the GlcNAc titers obtained in this strain were higher than those obtained in the GlcNAc titers obtained from mutant strains generated in Example 4 and lacking mutant glmS*54.
實施例Example 77 :經修飾的大腸桿菌宿主中: in a modified E. coli host GlcNAcGlcNAc 的產生generation
如實施例2所述的經修飾以產生GlcNAc之突變大腸桿菌菌株可進一步以包括來自大腸桿菌的glmS*54之持續型表現匣之基因敲入進行轉形,該glmS*54與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變,如Deng等人所述(Biochimie 2006: 88, 419-429)。當根據實施例1中的培養條件(其中培養基含有甘油)在生長實驗中進行評估時,新穎菌株亦在全肉湯樣品中產生GlcNAc,且在此菌株中所獲得的GlcNAc力價高於在實施例2產生且缺乏突變glmS*54的突變菌株所獲得的GlcNAc力價。Mutant E. coli strains modified to produce GlcNAc as described in Example 2 can be further transformed with a gene knock-in comprising a persistent expression cassette of glmS*54 from E. coli, which is combined with the wild-type glmS protein (UniProt ID P17169) differed by the A39T, R250C and G472S mutations as described by Deng et al. (Biochimie 2006: 88, 419-429). The novel strain also produced GlcNAc in whole broth samples when evaluated in growth experiments according to the culture conditions in Example 1 (wherein the medium contained glycerol), and the GlcNAc titers obtained in this strain were higher than those obtained in the GlcNAc titers obtained from mutant strains generated in Example 2 and lacking mutant glmS*54.
實施例Example 88 :經修飾的大腸桿菌宿主中: in a modified E. coli host LacNAcLacNAc 或or LNBLNB 的產生generation
如實施例2及4至7所述,具有 nagABKO並表現GNA1(UniProt ID P43577)且具有或不具有額外的突變glmS*54表現(與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變,如Deng等人所述(Biochimie 2006: 88, 419-429))之的突變GlcNAc產生大腸桿菌K-12 MG1655菌株可進一步以含有持續型轉錄單元的質體進行轉形以表現具有SEQ ID NO 15的腦膜炎雙球菌的N-乙醯葡萄糖胺β1,4-半乳糖基轉移酶LgtB或具有SEQ ID NO 03的來自大腸桿菌O55:H7的N-乙醯葡萄糖胺β1,3-半乳糖基轉移酶WbgO。 As described in Examples 2 and 4 to 7, with nagAB KO and expressing GNA1 (UniProt ID P43577) with or without additional mutant glmS*54 expression (different from wild-type glmS protein (UniProt ID P17169) in A39T, R250C and the G472S mutation, as described by Deng et al. (Biochimie 2006: 88, 419-429), the mutant GlcNAc-producing E. coli K-12 MG1655 strain can be further transformed with plastids containing a persistent transcription unit to express Meningococcus N-acetylglucosamine β1,4-galactosyltransferase LgtB of SEQ ID NO 15 or N-acetylglucosamine β1,3- from Escherichia coli O55:H7 with SEQ ID NO 03 Galactosyltransferase WbgO.
當根據實施例1中的培養條件(其中培養基含有甘油)在生長實驗中進行評估時,表現SEQ ID NO 15的LgtB之各新穎菌株在全肉湯樣品中產生GlcNAc及LacNAc。與表現SEQ ID NO 15但缺乏突變glmS*54的修飾菌株相比,表現SEQ ID NO 15且亦表現突變glmS*54的新穎菌株中的GlcNAc及LacNAc力價較高。Each of the novel strains expressing LgtB of SEQ ID NO 15 produced GlcNAc and LacNAc in whole broth samples when evaluated in growth experiments according to the culture conditions in Example 1, wherein the medium contained glycerol. GlcNAc and LacNAc titers were higher in the novel strain expressing SEQ ID NO 15 and also expressing the mutant glmS*54 compared to the modified strain expressing SEQ ID NO 15 but lacking the mutant glmS*54.
當根據實施例1中的培養條件(其中培養基含有甘油)在生長實驗中進行評估時,表現SEQ ID NO 03的WbgO之各新穎菌株在全肉湯樣品中產生GlcNAc及LNB。與表現SEQ ID NO 03的WbgO但缺乏突變glmS*54的修飾菌株相比,表現SEQ ID NO 03且亦表現突變glmS*54的新穎菌株中的GlcNAc及LNB力價較高。Each of the novel strains expressing WbgO of SEQ ID NO 03 produced GlcNAc and LNB in whole broth samples when evaluated in growth experiments according to the culture conditions in Example 1, wherein the medium contained glycerol. GlcNAc and LNB titers were higher in the novel strain expressing SEQ ID NO 03 and also expressing the mutant glmS*54 compared to the modified strain expressing the WbgO of SEQ ID NO 03 but lacking the mutant glmS*54.
實施例Example 99 :經修飾的大腸桿菌宿主中: in a modified E. coli host GlcNAcGlcNAc 的產生generation
如實施例1所述,優化GDP-岩藻糖產生的大腸桿菌突變K-12 MG1655菌株可進一步突變以額外產生GlcNAc。該突變包括大腸桿菌 nagA及 nagB基因的剃除與持續型表現建構體的敲入,該持續型表現建構體含有突變glmS*54(其與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變)及來自啤酒酵母菌的GNA1(UniProt ID P43577)。根據實施例1提供的培養條件(其中培養基含有30g/L蔗糖),在生長實驗中評價新穎菌株並與其親本菌株進行比較。各菌株在96孔盤的多個孔中生長72小時。實驗顯示,在新穎突變菌株的全肉湯樣品中可以測量到0.90 ± 0.10 g/L GlcNAc,而在原始親本菌株的全肉湯樣品中沒有檢測到GlcNAc產生。實驗進一步證明,與原始親本菌株相比,為GlcNAc產生添加的突變不影響新穎菌株產生GDP-岩藻糖。 As described in Example 1, the E. coli mutant K-12 MG1655 strain optimized for GDP-fucose production can be further mutated to additionally produce GlcNAc. The mutations included shaving of the E. coli nagA and nagB genes and knock-in of a persistent expression construct containing the mutation glmS*54 (which differs from the wild-type glmS protein (UniProt ID P17169) by A39T, R250C and G472S mutation) and GNA1 from Saccharomyces cerevisiae (UniProt ID P43577). The novel strains were evaluated in growth experiments and compared to their parental strains according to the culture conditions provided in Example 1 (wherein the medium contained 30 g/L sucrose). Each strain was grown in multiple wells of a 96-well plate for 72 hours. Experiments showed that 0.90 ± 0.10 g/L GlcNAc could be measured in whole broth samples of the novel mutant strain, whereas no GlcNAc production was detected in whole broth samples of the original parental strain. The experiments further demonstrated that the mutations added for GlcNAc production did not affect GDP-fucose production by the novel strain compared to the original parental strain.
實施例Example 1010 :經修飾的大腸桿菌宿主中: in a modified E. coli host GlcNAcGlcNAc 及and LacNAcLacNAc 的產生generation
如實施例1所述,優化GDP-岩藻糖產生的大腸桿菌突變K-12 MG1655菌株可以大腸桿菌 nagA及 nagB基因的剃除與具有SEQ ID NO 15的腦膜炎雙球菌的N-乙醯葡萄糖胺β1,4-半乳糖基轉移酶(LgtB)之持續型表現建構體的基因敲入進行進一步突變。下一步,用由不同轉錄單元(TU)構建的不同持續型表現載體轉形該突變株的細胞,該轉錄單元含有來自大腸桿菌的突變glmS*54(其與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變)及來自啤酒酵母菌的GNA1(UniProt ID P43577),如表2及表3所列。根據實施例1提供的培養條件在生長實驗中評估所有新穎菌株(A-H)。表2顯示在含有30 g/L蔗糖的基本培養基中培養72小時後,採集來自每個新穎突變大腸桿菌菌株的全肉湯樣品中的GlcNAc(g/L)和LacNAc(g/L)的產量。數據證明,所有新菌株均能夠產生GlcNAc和LacNAc兩者,無需向培養基中補充添加GlcNAc。相比之下,具有相同遺傳背景但缺乏glmS*54和GNA1表現質體的參考菌株只能在補充有GlcNAc的培養基中產生LacNAc(結果未示出)。表2亦顯示,所有新穎菌株中GlcNAc和LacNAc兩者的產生力價可以根據表現載體A-H中選擇的轉錄單元而變化,以表現SEQ ID NO 15和19。 As described in Example 1, the E. coli mutant K-12 MG1655 strain optimized for GDP-fucose production can shave the E. coli nagA and nagB genes with N-acetylglucose from N. meningitidis having SEQ ID NO 15 Knock-in of a persistent expression construct of amine β1,4-galactosyltransferase (LgtB) was further mutated. Next, cells of this mutant strain were transformed with different persistent expression vectors constructed from different transcription units (TUs) containing the mutant glmS*54 from E. coli (which is identical to the wild-type glmS protein (UniProt ID P17169) The differences are A39T, R250C and G472S mutations) and GNA1 from Saccharomyces cerevisiae (UniProt ID P43577), as listed in Tables 2 and 3. All novel strains (AH) were evaluated in growth experiments according to the culture conditions provided in Example 1. Table 2 shows the yields of GlcNAc (g/L) and LacNAc (g/L) in whole broth samples taken from each novel mutant E. coli strain after 72 hours of culture in minimal medium containing 30 g/L sucrose . The data demonstrate that all new strains are capable of producing both GlcNAc and LacNAc without supplemental addition of GlcNAc to the medium. In contrast, a reference strain of the same genetic background but lacking glmS*54 and GNA1 expressing plastids could only produce LacNAc in medium supplemented with GlcNAc (results not shown). Table 2 also shows that the production titers of both GlcNAc and LacNAc in all novel strains can vary depending on the transcription unit selected in expression vector AH to express SEQ ID NOs 15 and 19.
表2:在含有30 g/L蔗糖的基本培養基中培養72小時後,採集來自突變大腸桿菌菌株的全肉湯樣品中的GlcNAc(g/L)和LacNAc(g/L)的產量
表3:用於轉錄單元(TU)的啟動子及UTR序列,以表現如表2所示的glmS*54(其與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變)及GNA1(UniProt ID P43577)
實施例Example 1111 :評估經修飾的大腸桿菌宿主中: Evaluation of modified E. coli hosts in LacNAcLacNAc 產生produce
在下一實驗中,優化GDP-岩藻糖產生且如實施例9所述的產生GlcNAc之大腸桿菌K-12 MG1655菌株可進一步以具有SEQ ID NO 15的腦膜炎雙球菌的N-乙醯葡萄糖胺β1,4-半乳糖基轉移酶(LgtB)的敲入進行修飾。在如實施例1所述的生長實驗中評估此新穎菌株,其與參考菌株共享 nagAB剃除及 LgtB敲入但表現來自相同轉錄單元的glmS*54(其與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變)及GNA1(UniProt ID P43577)呈遞給來自質體的菌株。表4顯示來自在具有30g/L蔗糖的基本培養基中培養72小時後採集的每個突變大腸桿菌菌株的全肉湯樣品中GlcNAc(g/L)和LacNAc(g/L)的產生。數據顯示,突變菌株兩者皆產生GlcNAc和LacNAc,其與GNA1和glmS*54兩者如何呈遞給菌株無關。 In the next experiment, the E. coli K-12 MG1655 strain that was optimized for GDP-fucose production and that produced GlcNAc as described in Example 9 was further treated with N-acetylglucosamine of N. meningitidis having SEQ ID NO 15 Modified by knock-in of β1,4-galactosyltransferase (LgtB). This novel strain, which shares nagAB shaving and LgtB knock-in with the reference strain, was evaluated in growth experiments as described in Example 1 but expresses glmS*54 from the same transcriptional unit (which is identical to the wild-type glmS protein (UniProt ID P17169) The difference is that A39T, R250C and G472S mutations) and GNA1 (UniProt ID P43577) are presented to the plastid-derived strain. Table 4 shows the production of GlcNAc (g/L) and LacNAc (g/L) in whole broth samples from each mutant E. coli strain collected after 72 hours of culture in minimal medium with 30 g/L sucrose. The data show that both mutant strains produce GlcNAc and LacNAc independent of how both GNA1 and glmS*54 are presented to the strain.
表4:在包括30g/L蔗糖的基本培養基中培養72小時後,採集自突變大腸桿菌菌株的全肉湯樣品中GlcNAc(g/L)和LacNAc(g/L)的產生
實施例Example 1212 :修飾的大腸桿菌宿主中: in a modified E. coli host GlcNAcGlcNAc 和and LacNAcLacNAc 的產生generation
在下一實驗中,大腸桿菌K-12 MG1655菌株藉由具有SEQ ID NO 15的腦膜炎雙球菌的N-乙醯葡萄糖胺β1,4-半乳糖基轉移酶(LgtB)的敲入進行進一步修飾,該大腸桿菌K-12 MG1655菌株如實施例1所述,產生唾液酸且含有大腸桿菌 nagA及 nagB基因的剃除及含有glmS*54(其與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變)、GNA1(UniProt ID P43577)、來自卵形擬桿菌的N-乙醯葡萄糖胺2-表異構酶(AGE)(UniProt ID A7LVG6)及來自腦膜炎雙球菌的N-乙醯神經胺酸合成酶(NeuB)(UniProt ID E0NCD4)之持續型表現建構體的基因敲入。 In the next experiment, the E. coli K-12 MG1655 strain was further modified by knock-in of N-acetylglucosamine β1,4-galactosyltransferase (LgtB) of N. meningitidis with SEQ ID NO 15, The E. coli K-12 MG1655 strain produces sialic acid as described in Example 1 and contains shaving of the E. coli nagA and nagB genes and glmS*54 (which differs from the wild-type glmS protein (UniProt ID P17169) in A39T, R250C and G472S mutations), GNA1 (UniProt ID P43577), N-acetylglucosamine 2-epimerase (AGE) from Bacteroides ovale (UniProt ID A7LVG6) and N-acetyl from Neisseria meningitidis Knock-in of a persistent expression construct of neuraminidine synthase (NeuB) (UniProt ID E0NCD4).
並且,如實施例1所述的以基因剃除大腸桿菌 ushA及 galT基因並以基因敲入大腸桿菌的UDP-葡萄糖-4-表異構酶(galE)(UniProt ID P09147)的持續型表現建構體優化促進UDP-半乳糖產生且大腸桿菌K-12 MG1655菌株藉由剃除大腸桿菌 nagB基因和基因敲入編碼SEQ ID NO 15的基因的持續型表現構建體進行額外的突變。根據實施例1中提供的培養條件(其中,該培養基含有蔗糖)在生長實驗中評估新穎菌株並與其各自的親本菌株進行比較。各菌株在96孔盤的多個孔中生長72小時。實驗證實,在全肉湯樣品中,各新穎菌株均產生GlcNAc和LacNAc,而親本菌株兩者均不產生LacNAc。 Also, a persistent expression construct of UDP-glucose-4-epimerase (galE) (UniProt ID P09147) with genetic shaving of E. coli ushA and galT genes and knock-in of E. coli as described in Example 1 Body optimization promoted UDP-galactose production and the E. coli K-12 MG1655 strain was additionally mutated by shaving the E. coli nagB gene and knocking in a persistent expression construct for the gene encoding SEQ ID NO 15. Novel strains were evaluated in growth experiments and compared to their respective parental strains according to the culture conditions provided in Example 1 (wherein the medium contained sucrose). Each strain was grown in multiple wells of a 96-well plate for 72 hours. The experiments confirmed that, in the whole broth samples, each novel strain produced both GlcNAc and LacNAc, while neither parent strain produced LacNAc.
實施例Example 1313 :修飾的大腸桿菌宿主中半乳糖基化寡醣的產生: Production of galactosylated oligosaccharides in modified E. coli hosts
優化促進UDP-半乳糖產生且如實施例12所述的產生GlcNAc和LacNAc之大腸桿菌K-12 MG1655菌株可進一步以含有SEQ ID NO 3的來自 E. coliO55:H7的N-乙醯葡萄糖胺 β1,3-半乳糖基轉移酶WbgO的持續型表現建構體之表現載體進行額外轉形。當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,除了GlcNAc、LacNAc和LNB之外,新穎菌株還產生Gal-b14-(Galb13)-GlcNAc,其含有兩個將β-1,3及β-1,4連接至GlcNAc的半乳糖部分。 The E. coli K-12 MG1655 strain optimized to promote UDP-galactose production and produce GlcNAc and LacNAc as described in Example 12 can be further modified with N-acetylglucosamine from E. coli O55:H7 containing SEQ ID NO 3 The expression vector for the persistent expression construct of β1,3-galactosyltransferase WbgO was additionally transformed. When evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained sucrose), in addition to GlcNAc, LacNAc and LNB, the novel strain also produced Gal-b14-(Galb13)-GlcNAc, which contained two β-1,3 and β-1,4 were linked to the galactose moiety of GlcNAc.
實施例Example 1414 :修飾的大腸桿菌宿主中岩藻糖基化: Fucosylation in modified E. coli hosts LacNAcLacNAc 的產生generation
優化GDP-岩藻糖產生且如實施例10所述的產生GlcNAc及LacNAc之大腸桿菌K-12 MG1655突變菌株H可以含有皆來自幽門螺旋桿菌的a1,2-岩藻糖基轉移酶HpFutC(GenBank NO. AAD29863.1)或a1,3-岩藻糖基轉移酶HpFucT(UniProt ID O30511)的持續型表現建構體之表現質體進行額外轉形。根據實施例1中提供的培養條件在生長實驗中評估新穎菌株。表5顯示來自在具有30g/L蔗糖的基本培養基中培養72小時後採集的兩種突變菌株的全肉湯樣品中2'FLacNAc(g/L)或3-FLacNAc(g/L)的產生。數據證實,各新穎菌株產生GlcNAc、LacNAc及岩藻糖基化形式的LacNAc,其中2'FLacNAc在表現HpFutC(GenBank NO. AAD29863.1)的菌株中產生,3-FLacNAc在表現HpFucT(UniProt ID O30511)的菌株中產生。在此實驗中未檢測到二岩藻糖基化LacNAc。在缺乏岩藻糖基轉移酶表現載體的相同遺傳背景的親本菌株的全肉湯樣品中無法檢測到岩藻糖基化LacNAc變體。The E. coli K-12 MG1655 mutant strain H that was optimized for GDP-fucose production and produced GlcNAc and LacNAc as described in Example 10 may contain the al,2-fucosyltransferase HpFutC (GenBank No. AAD29863.1) or the expression plastids of the persistent expression construct of a1,3-fucosyltransferase HpFucT (UniProt ID O30511) underwent additional transformation. Novel strains were evaluated in growth experiments according to the culture conditions provided in Example 1. Table 5 shows the production of 2'FLacNAc (g/L) or 3-FLacNAc (g/L) in whole broth samples from two mutant strains collected after 72 hours of culture in minimal medium with 30 g/L sucrose. The data confirmed that each novel strain produced GlcNAc, LacNAc, and fucosylated forms of LacNAc, with 2'FLacNAc produced in a strain expressing HpFutC (GenBank NO. AAD29863.1) and 3-FLacNAc in a strain expressing HpFucT (UniProt ID O30511 ) strains. Difucosylated LacNAc was not detected in this experiment. Fucosylated LacNAc variants could not be detected in whole broth samples of the parental strain of the same genetic background lacking the fucosyltransferase expression vector.
表5:來自在包括30g/L蔗糖的基本培養基中培養72小時後的突變大腸桿菌菌株採集的全肉湯樣品中2'FLacNAc(g/L)及3-FLacNAc(g/L)的產生
實施例Example 1515 :修飾的大腸桿菌宿主中二岩藻糖基化: Difucosylation in a modified E. coli host LacNAcLacNAc 的產生generation
優化GDP-岩藻糖產生且如實施例10所述的產生GlcNAc及LacNAc之大腸桿菌K-12 MG1655突變菌株H可以含有岩藻糖基轉移酶HpFutC(GenBank NO. AAD29863.1)及HpFucT(UniProt ID O30511)的持續型表現建構體之表現質體進行額外轉形。當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,在全肉湯樣品中除了GlcNAc及LacNAc之外,新穎菌株還產生2’-岩藻糖基化、3-岩藻糖基化及二岩藻糖基化LacNAc。E. coli K-12 MG1655 mutant strain H that is optimized for GDP-fucose production and produces GlcNAc and LacNAc as described in Example 10 may contain the fucosyltransferases HpFutC (GenBank NO. AAD29863.1) and HpFucT (UniProt ID O30511) with additional transformation of the presentation plastids of the persistent presentation construct. The novel strain produced 2'-fucosylated, 3 - Fucosylated and difucosylated LacNAc.
實施例Example 1616 :修飾的大腸桿菌宿主中唾液酸化: Sialylation in modified E. coli hosts LacNAcLacNAc 的產生generation
如實施例1所述的產生唾液酸之大腸桿菌K-12 MG1655菌株進一步以具有SEQ ID NO 15的LgtB之持續型表現建構體的敲入進行突變並以表現質體進行轉形,該表現質體含有來自出血性巴氏桿菌的N-醯基神經胺酸胞苷醯轉移酶(NeuA)(GenBank NO. AMK07891.1)及由具有β-半乳糖苷α-2,3-唾液酸轉移酶活性的UniProt ID Q9CLP3的胺基酸殘基1至268所組成的PmultST3樣多肽之持續型表現建構體。根據實施例1提供的培養條件(其中培養基含有30g/L蔗糖),在生長實驗中評價新穎菌株並與其親本菌株進行比較。各菌株在96孔盤的多個孔中生長72小時。數據顯示,在全肉湯樣品中,除了GlcNAc及LacNAc之外,新穎菌株產生0.32 ± 0.02 g/L a2,3-唾液酸化LacNAc。無法檢測到二唾液酸化LacNAc。在缺乏唾液酸轉移酶表現載體的相同遺傳背景的親本菌株的全肉湯樣品中無法檢測到唾液酸化的LacNAc變體。The sialic acid-producing E. coli K-12 MG1655 strain as described in Example 1 was further mutated with a knock-in of a persistent expression construct of LgtB having SEQ ID NO 15 and transformed with an expression plastid that The body contains N-acylneuraminic acid cytidine transferase (NeuA) (GenBank NO. AMK07891.1) from Pasteurella haemorrhage and a A persistent expression construct of a PmultST3-like polypeptide consisting of amino acid residues 1 to 268 of active UniProt ID Q9CLP3. The novel strains were evaluated in growth experiments and compared to their parental strains according to the culture conditions provided in Example 1 (wherein the medium contained 30 g/L sucrose). Each strain was grown in multiple wells of a 96-well plate for 72 hours. The data showed that, in the whole broth samples, the novel strain produced 0.32 ± 0.02 g/L a2,3-sialylated LacNAc in addition to GlcNAc and LacNAc. Disialyl LacNAc could not be detected. The sialylated LacNAc variant could not be detected in whole broth samples of the parental strain of the same genetic background lacking the sialyltransferase expression vector.
相似地,如實施例1所述的產生唾液酸之大腸桿菌K-12 MG1655菌株可進一步以具有SEQ ID NO 15的LgtB之持續型表現建構體的敲入進行突變並以表現質體進行轉形,該表現質體含有來自出血性巴氏桿菌的NeuA(GenBank NO. AMK07891.1)及由具有β-半乳糖苷α-2,6-唾液酸轉移酶活性的UniProt ID O66375的胺基酸殘基108至497所組成的PdST6樣多肽之持續型表現建構體。當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,在全肉湯樣品中新穎菌株產生GlcNAc及LacNAc、以及a2,6-唾液酸化LacNAc。Similarly, the sialic acid-producing E. coli K-12 MG1655 strain as described in Example 1 can be further mutated with a knock-in of a persistent expression construct of LgtB having SEQ ID NO 15 and transformed with an expression plasmid , the expressing plastid contains NeuA from Pasteurella haemorrhagic (GenBank NO. AMK07891.1) and amino acid residues from UniProt ID O66375 with β-galactoside α-2,6-sialyltransferase activity Persistent expression constructs of PdST6-like polypeptides composed of bases 108 to 497. The novel strain produced GlcNAc and LacNAc, as well as a2,6-sialylated LacNAc, in the whole broth sample when evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained sucrose).
實施例Example 1717 :修飾的大腸桿菌宿主中二唾液酸化: Disialylation in a modified E. coli host LacNAcLacNAc 的產生generation
如實施例1所述的產生CMP-唾液酸之大腸桿菌K-12 MG1655菌株可進一步以具有SEQ ID NO 15的LgtB之持續型表現建構體的敲入進行突變並以表現質體進行轉形,該表現質體含有由具有β-半乳糖苷α-2,3-唾液酸轉移酶活性的UniProt ID Q9CLP3的胺基酸殘基1至268所組成的PmultST3樣多肽及由具有β-半乳糖苷α-2,6-唾液酸轉移酶活性的UniProt ID O66375的胺基酸殘基108至497所組成的PdST6樣多肽之持續型表現建構體。當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,在全肉湯樣品中新穎菌株產生GlcNAc及LacNAc、以及3’-唾液酸化、6’-唾液酸化以及二唾液酸化LacNAc。The CMP-sialic acid-producing E. coli K-12 MG1655 strain as described in Example 1 can be further mutated with a knock-in of a persistent expression construct of LgtB having SEQ ID NO 15 and transformed with an expression plasmid, The expressing plastid contains a PmultST3-like polypeptide consisting of amino acid residues 1 to 268 of UniProt ID Q9CLP3 with β-galactoside α-2,3-sialyltransferase activity and a PmultST3-like polypeptide with β-galactoside α-2,3-sialyltransferase activity. A persistent expression construct of a PdST6-like polypeptide consisting of amino acid residues 108 to 497 of UniProt ID 066375 with alpha-2,6-sialyltransferase activity. The novel strain produced GlcNAc and LacNAc, as well as 3'-sialylation, 6'-sialylation, and di-sialylation in whole broth samples, when evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained sucrose) Sialyl LacNAc.
實施例Example 1818 :大腸桿菌宿主中修飾的: modified in E. coli hosts LacNAcLacNAc 的產生generation
優化GDP-岩藻糖產生且如實施例11所述的產生GlcNAc及LacNAc之大腸桿菌K-12 MG1655菌株可以含有皆來自腦膜炎雙球菌的b1,3-N-乙醯基-己醣胺轉移酶lgtA(GenBank NO. AAM33849.1)的持續型表現建構體之表現質體進行額外轉形。藉由突變體glmS*54(其與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變)、同源EcGlmM和EcGlmU以及異源NmLgtA(GenBank NO. AAM33849.1)的後續作用,由此產生的菌株當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,在細胞內將果糖-6-磷酸鹽轉化為UDP-GlcNAc,並使用此UDP-GlcNAc進行細胞內修飾LacNAc以導致在全肉湯樣品中產生GlcNAc-b1,3-Gal-b1,4-GlcNAc。該菌株亦產生聚-LacNAc結構,即(Gal-b1,4-GlcNAc)n,其由重複的N-乙醯乳糖胺建構而成,該重複的N-乙醯乳糖胺是藉由具有SEQ ID NO 15的LgtB的替代活性以及在菌株中表現的LgtA(GenBank NO. AAM33849.1)將beta1,3相互連接。The E. coli K-12 MG1655 strain optimized for GDP-fucose production and producing GlcNAc and LacNAc as described in Example 11 may contain bl,3-N-acetyl-hexosaminotransferases both from N. meningitidis The expressing plastids of the persistent expressing construct of the enzyme lgtA (GenBank NO. AAM33849.1) underwent additional transformation. By subsequent action of mutant glmS*54, which differs from wild-type glmS protein (UniProt ID P17169) by A39T, R250C and G472S mutations, homologous EcGlmM and EcGlmU, and heterologous NmLgtA (GenBank NO. AAM33849.1), The resulting strain converts fructose-6-phosphate to UDP-GlcNAc intracellularly, and uses this Intracellular modification of LacNAc was performed to result in the production of GlcNAc-bl,3-Gal-bl,4-GlcNAc in whole broth samples. This strain also produces a poly-LacNAc structure, (Gal-b1,4-GlcNAc)n, which is constructed from repeating N-acetyllactosamine by having SEQ ID The alternative activity of LgtB at NO 15 and LgtA expressed in the strain (GenBank NO. AAM33849.1) linked beta1,3 to each other.
優化UDP-半乳糖產生且如實施例12所述的產生GlcNAc和LacNAc之大腸桿菌K-12 MG1655菌株經修飾以持續性表現來自綠膿桿菌( Pseudomonas aeruginosa)的UDP-GlcNAc表異構酶wbpP(UniProt ID Q8KN66)以及來自流感嗜血桿菌的醣基轉移酶lgtD(UniProt ID A0A2X4DBP3)。藉由突變大腸桿菌glmS*54(其與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變)、同源大腸桿菌GlmM和GlmU以及綠膿桿菌wbpP(UniProt ID Q8KN66)的後續作用,果糖-6-磷酸鹽經由中間化合物葡萄糖胺-6-磷酸鹽、葡萄糖胺-1-磷酸鹽和UDP-GlcNAc在細胞內將果糖-6-磷酸鹽轉換為UDP-GalNAc。藉由新表現的LgtD酶(UniProt ID A0A2X4DBP3)的後續作用,新穎菌株當根據實施例1中提供的培養條件(其中,培養基含有30 g/L蔗糖)評估的生長實驗中,能夠用GalNAc修飾細胞內產生的LacNAc,在全肉湯樣品中產生0.12 ± 0.02 g/L GalNAc-b1,3-Gal-b1,4-GlcNAc。 The E. coli K-12 MG1655 strain optimized for UDP-galactose production and producing GlcNAc and LacNAc as described in Example 12 was modified to persistently express the UDP-GlcNAc epimerase wbpP from Pseudomonas aeruginosa ( UniProt ID Q8KN66) and the glycosyltransferase lgtD from Haemophilus influenzae (UniProt ID A0A2X4DBP3). Subsequent action by mutant E. coli glmS*54 (which differs from wild-type glmS protein (UniProt ID P17169) by A39T, R250C and G472S mutations), homologous E. coli GlmM and GlmU, and Pseudomonas aeruginosa wbpP (UniProt ID Q8KN66) , fructose-6-phosphate is intracellularly converted to UDP-GalNAc via the intermediate compounds glucosamine-6-phosphate, glucosamine-1-phosphate and UDP-GlcNAc. By subsequent action of the newly expressed LgtD enzyme (UniProt ID A0A2X4DBP3), the novel strain was able to modify cells with GalNAc when evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained 30 g/L sucrose). LacNAc was produced in the whole broth sample, yielding 0.12 ± 0.02 g/L GalNAc-b1,3-Gal-b1,4-GlcNAc in the whole broth sample.
實施例Example 1919 :修飾的大腸桿菌中唾液酸化的聚: sialylated polysaccharides in modified E. coli LacNAcLacNAc 的產生generation
如實施例16及17所述的全肉湯樣品中產生LacNAc及LacNAc的唾液酸化形式之大腸桿菌菌株可進一步以表現質體進行轉形,該表現質體含有LgtA(GenBank NO. AAM33849.1)之持續型表現建構體。藉由分別具有SEQ ID NO 15及GenBank NO. AAM33849.1的LgtB和LgtA轉移酶的替代活性,當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,新穎菌株另外產生聚-LacNAc結構,即(Gal-b1,4-GlcNAc)n,其由重複的N-乙醯乳糖胺構成,該重複的N-乙醯乳糖胺是連同其中Gal被唾液酸化的唾液酸化聚lacNAc結構,將β1,3-互相連接。E. coli strains producing LacNAc and sialylated forms of LacNAc in whole broth samples as described in Examples 16 and 17 can be further transformed with expression plastids containing LgtA (GenBank NO. AAM33849.1) The persistent expressive construct. By having the replacement activities of LgtB and LgtA transferases with SEQ ID NO 15 and GenBank NO. AAM33849.1, respectively, the novel strains were evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained sucrose) A poly-LacNAc structure was additionally generated, namely (Gal-b1,4-GlcNAc)n, which consisted of repeating N-acetyllactosamine, which was sialylated together with the Gal in which Gal was sialylated PolylacNAc structure, linking β1,3- to each other.
實施例Example 2020 :修飾的大腸桿菌宿主中: in a modified E. coli host LNBLNB 的產生generation
在下一實驗中,優化GDP-岩藻糖產生且如實施例9所述的產生GlcNAc之大腸桿菌K-12 MG1655菌株可進一步以具有SEQ ID NO 03或者來自質體或來自基因敲入的WbgO的持續型表現進行修飾。根據實施例1提供的培養條件,在生長實驗中評價新穎菌株並與缺少SEQ ID NO 03表現構建體的親本菌株進行比較。表6顯示在含有30 g/L蔗糖的基本培養基中培養72小時後獲取的每個突變菌株的全肉湯樣品中LNB(g/L)的產生。數據證實,這兩種新穎菌株在全肉湯樣品中都產生LNB,與WbgO如何呈遞給菌株無關。In the next experiment, the E. coli K-12 MG1655 strain optimized for GDP-fucose production and producing GlcNAc as described in Example 9 can be further characterized with SEQ ID NO 03 or WbgO from plastids or from knock-in Persistent performance is modified. According to the culture conditions provided in Example 1, the novel strain was evaluated in growth experiments and compared to the parental strain lacking the expression construct of SEQ ID NO 03. Table 6 shows LNB (g/L) production in whole broth samples of each mutant strain obtained after 72 hours of culture in minimal medium containing 30 g/L sucrose. The data confirmed that both novel strains produced LNB in whole broth samples regardless of how WbgO was presented to the strains.
表6:在包括30g/L蔗糖的基本培養基中培養72小時後,採集自突變大腸桿菌菌株的全肉湯樣品中LNB(g/L)的產生
實施例Example 21twenty one :修飾的大腸桿菌宿主中岩藻糖基化: Fucosylation in modified E. coli hosts LNBLNB 的產生generation
優化GDP-岩藻糖產生且如實施例20(其中具有SEQ ID NO 03的WbgO是來自基因敲入的表現)所述的產生GlcNAc及LNB之大腸桿菌K-12 MG1655菌株可以含有皆來自幽門螺旋桿菌的a1,2-岩藻糖基轉移酶HpFutC(GenBank NO. AAD29863.1)或a1,3-岩藻糖基轉移酶HpFucT(UniProt ID O30511)的持續型表現建構體之表現質體進行額外轉形。根據實施例1中提供的培養條件在生長實驗中評估新穎菌株。表7顯示來自在具有30g/L蔗糖的基本培養基中培養72小時後採集的兩種突變菌株的全肉湯樣品中2’FLNB(g/L)或4-FLNB(g/L)的產生。數據證實,各新穎菌株在全肉湯樣品產生岩藻糖基化形式的LNB,其中2’FLNB在表現HpFutC(GenBank NO. AAD29863.1)的菌株中測量到,且4-FLNB在表現HpFucT(UniProt ID O30511)的菌株中測量到。在此實驗中未檢測到二岩藻糖基化LNB。在缺乏岩藻糖基轉移酶表現載體的相同遺傳背景的親本菌株的全肉湯樣品中無法檢測到岩藻糖基化LNB變體。The E. coli K-12 MG1655 strain that is optimized for GDP-fucose production and that produces GlcNAc and LNB as described in Example 20 (wherein WbgO with SEQ ID NO 03 is expression from knock-in) may contain both derived from Helicobacter pylori The expression plastids of the persistent expression constructs of the bacillus a1,2-fucosyltransferase HpFutC (GenBank NO. AAD29863.1) or a1,3-fucosyltransferase HpFucT (UniProt ID O30511) were additionally Transform. Novel strains were evaluated in growth experiments according to the culture conditions provided in Example 1. Table 7 shows the production of 2' FLNB (g/L) or 4-FLNB (g/L) in whole broth samples from two mutant strains collected after 72 hours of culture in minimal medium with 30 g/L sucrose. The data confirmed that each novel strain produced fucosylated forms of LNB in whole broth samples, with 2'FLNB measured in a strain expressing HpFutC (GenBank NO. AAD29863.1) and 4-FLNB in a strain expressing HpFucT ( UniProt ID O30511) strains. Difucosylated LNB was not detected in this experiment. Fucosylated LNB variants could not be detected in whole broth samples of the parental strain of the same genetic background lacking the fucosyltransferase expression vector.
表7:來自在包括30g/L蔗糖的基本培養基中培養72小時後的突變大腸桿菌菌株採集的全肉湯樣品中2’FLNB(g/L)及4-FLNB(g/L)的產生
實施例Example 22twenty two :修飾的大腸桿菌宿主中二岩藻糖基化: Difucosylation in a modified E. coli host LNBLNB 的產生generation
優化GDP-岩藻糖產生且如實施例20(其中具有SEQ ID NO 03的WbgO是來自基因敲入的表現)所述的產生GlcNAc及LNB之大腸桿菌K-12 MG1655菌株可以含有a1,2-岩藻糖基轉移酶HpFutC(GenBank NO. AAD29863.1)及a1,3-岩藻糖基轉移酶HpFucT(UniProt ID O30511)兩者的持續型表現建構體之表現質體進行額外轉形。當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,新穎菌株在全肉湯樣品產生GlcNAc和LNB以及2'-岩藻糖基化、4-岩藻糖基化和二岩藻糖基化的LNB。E. coli K-12 MG1655 strains that are optimized for GDP-fucose production and that produce GlcNAc and LNB as described in Example 20 (wherein WbgO with SEQ ID NO 03 is expression from knock-in) may contain a1,2- The expressing plastids of the persistent expressing constructs of both fucosyltransferase HpFutC (GenBank NO. AAD29863.1) and a1,3-fucosyltransferase HpFucT (UniProt ID O30511) underwent additional transformation. The novel strain produced GlcNAc and LNB as well as 2'-fucosylated, 4-fucosylated in whole broth samples when evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained sucrose) and difucosylated LNB.
實施例Example 23twenty three :修飾的大腸桿菌宿主中半乳糖基化: galactosylation in modified E. coli hosts LNBLNB 的產生generation
如實施例1所述的優化促進UDP-半乳糖產生之大腸桿菌K-12 MG1655菌株可進一步藉由大腸桿菌 nagB基因的剃除進行額外突變並進一步以具有SEQ ID NO 03或者來自質體或來自基因敲入的WbgO的持續型表現進行進一步修飾。當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,在全肉湯樣品中新穎菌株皆產生LNB。當用α-1,2-半乳糖基轉移酶及/或α-1,3-半乳糖基轉移酶及/或β-1,3-半乳糖基轉移酶及/或β-1,4-半乳糖基轉移酶的表現構建體額外轉化新穎的LNB產生菌株時,在根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,各新穎菌株在全肉湯樣品中產生GlcNAc和LNB以及半乳糖基化的LNB形式。 The E. coli K-12 MG1655 strain optimized for UDP-galactose production as described in Example 1 can be further mutated by shaving the E. coli nagB gene and further mutated to have SEQ ID NO 03 either from plastid or from The persistent expression of the knock-in WbgO was further modified. The novel strains all produced LNB in the whole broth samples when evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained sucrose). When using α-1,2-galactosyltransferase and/or α-1,3-galactosyltransferase and/or β-1,3-galactosyltransferase and/or β-1,4- When additionally transforming novel LNB-producing strains with a galactosyltransferase expressing construct, each novel strain was in a whole broth sample in a growth experiment evaluated according to the culture conditions provided in Example 1 (wherein the medium contained sucrose). GlcNAc and LNB as well as galactosylated forms of LNB are produced.
實施例Example 24twenty four :修飾的大腸桿菌宿主中唾液酸化: Sialylation in modified E. coli hosts LNBLNB 的產生generation
如實施例1所述的產生CMP-唾液酸之大腸桿菌K-12 MG1655菌株可進一步以具有SEQ ID NO 03的WbgO之持續型表現建構體的敲入進行突變並以表現質體進行轉形,該表現質體含有由具有β-半乳糖苷α-2,3-唾液酸轉移酶活性的UniProt ID Q9CLP3的胺基酸殘基1至268所組成的PmultST3樣多肽之持續型表現建構體。當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,新穎菌株在全肉湯樣品中,除了GlcNAc及LNB之外,產生唾液酸化LacNAc LNB形式。相似地,另外表現具有SEQ ID NO 03的WbgO及由具有β-半乳糖苷 α-2,6-唾液酸轉移酶活性的UniProt ID O66375的胺基酸殘基108至497所組成的PdST6樣多肽之大腸桿菌K-12 MG1655 CMP-唾液酸產生菌株,當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗時,在全肉湯樣品中產生GlcNAc和LNB以及唾液酸化LNB形式。The CMP-sialic acid-producing E. coli K-12 MG1655 strain as described in Example 1 can be further mutated with a knock-in of a persistent expression construct of WbgO having SEQ ID NO 03 and transformed with an expression plastid, The expression plasmid contains a persistent expression construct of a PmultST3-like polypeptide consisting of amino acid residues 1 to 268 of UniProt ID Q9CLP3 having β-galactoside α-2,3-sialyltransferase activity. The novel strain produced the sialylated LacNAc LNB form in the whole broth sample, in addition to GlcNAc and LNB, when evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained sucrose). Similarly, WbgO with SEQ ID NO 03 and a PdST6-like polypeptide consisting of amino acid residues 108 to 497 of UniProt ID 066375 with β-galactoside α-2,6-sialyltransferase activity are additionally represented The E. coli K-12 MG1655 CMP-sialic acid-producing strain produced GlcNAc and LNB as well as sialylation in whole broth samples when grown according to the growth experiments assessed according to the culture conditions provided in Example 1 (wherein the medium contained sucrose) LNB form.
實施例Example 2525 :修飾的大腸桿菌宿主中二唾液酸化: Disialylation in a modified E. coli host LNBLNB 的產生generation
如實施例1所述的產生CMP-唾液酸之大腸桿菌K-12 MG1655菌株可進一步以具有SEQ ID NO 03的WbgO之持續型表現建構體的敲入進行突變並以表現質體進行轉形,該表現質體含有由具有β-半乳糖苷α-2,3-唾液酸轉移酶活性的UniProt ID Q9CLP3的胺基酸殘基1至268所組成的PmultST3樣多肽及/或由具有β-半乳糖苷 α-2,6-唾液酸轉移酶活性的UniProt ID O66375的胺基酸殘基108至497所組成的PdST6樣多肽之持續型表現建構體。當根據實施例1中提供的培養條件(其中,培養基含有蔗糖)評估的生長實驗中,在全肉湯樣品中新穎菌株產生GlcNAc及LNB、以及單唾液酸化及/或二唾液酸化LNB。The CMP-sialic acid-producing E. coli K-12 MG1655 strain as described in Example 1 can be further mutated with a knock-in of a persistent expression construct of WbgO having SEQ ID NO 03 and transformed with an expression plastid, The expressing plastid contains a PmultST3-like polypeptide consisting of amino acid residues 1 to 268 of UniProt ID Q9CLP3 with β-galactoside α-2,3-sialyltransferase activity and/or a PmultST3-like polypeptide with β-galactoside α-2,3-sialyltransferase activity A persistent expression construct of a PdST6-like polypeptide consisting of amino acid residues 108 to 497 of UniProt ID 066375 with lactoside alpha-2,6-sialyltransferase activity. The novel strain produced GlcNAc and LNB, as well as mono- and/or disialylated LNB in whole broth samples when evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained sucrose).
實施例Example 2626 :用突變大腸桿菌宿主發酵生產: Fermentative production with mutant E. coli hosts LacNAcLacNAc
優化GDP-岩藻糖產生且如實施例11中所述的藉由從表達質體呈遞給宿主的glmS*54(其與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變)及GNA1(UniProt ID P43577)產生GlcNAc和LacNAc之突變大腸桿菌K-12 MG1655菌株根據實施例1提供的條件,在5L生物反應器規模的補料批次發酵中進行評估。在此實施例中,蔗糖用作碳源。如實施例1所述,定期取樣並測量LacNAc的產生。GDP-fucose production was optimized and as described in Example 11 by glmS*54 presented to the host from an expression plastid (which differs from the wild-type glmS protein (UniProt ID P17169) by the A39T, R250C and G472S mutations) and GNA1 (UniProt ID P43577) mutant E. coli K-12 MG1655 strain producing GlcNAc and LacNAc was evaluated in a 5 L bioreactor scale fed batch fermentation according to the conditions provided in Example 1. In this example, sucrose was used as the carbon source. As described in Example 1, samples were periodically sampled and measured for LacNAc production.
實施例Example 2727 :當在除了蔗糖以外的其他碳源上生長時,經修飾的大腸桿菌宿主中: in modified E. coli hosts when grown on carbon sources other than sucrose LacNAcLacNAc 或or LNBLNB 的產生generation
當根據實施例1中提供的培養條件(其中,培養基含有甘油)評估的生長實驗中,如實施例10至12所述的經修飾產生GlcNAc和LacNAc的突變大腸桿菌菌株或如實施例20所述的經修飾產生GlcNAc和LNB的突變大腸桿菌菌株分別產生GlcNAc和LacNAc或GlcNAc和LNB。當如實施例1中所述,使用以下任一或多種的碳源,但不限於此:甘油、葡萄糖、果糖、乳糖、阿拉伯糖、麥芽三糖、山梨醇、木糖、鼠李糖及甘露糖而在生物反應器規模的補料批次發酵中進行評估時,該突變菌株也分別產生GlcNAc和LacNAc或GlcNAc和LNB。Mutant E. coli strains modified to produce GlcNAc and LacNAc as described in Examples 10 to 12 or as described in Example 20 when evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained glycerol) The mutant E. coli strains modified to produce GlcNAc and LNB produce GlcNAc and LacNAc or GlcNAc and LNB, respectively. When used as described in Example 1, one or more of the following carbon sources are used, but not limited to: glycerol, glucose, fructose, lactose, arabinose, maltotriose, sorbitol, xylose, rhamnose and This mutant strain also produced GlcNAc and LacNAc or GlcNAc and LNB, respectively, when evaluated in a bioreactor-scale fed-batch fermentation.
實施例Example 2828 :材料與方法啤酒酵母菌: Materials and Methods Saccharomyces cerevisiae
培養基culture medium
菌株在含有6.7 g/L酵母氮基不含胺基酸(YNB w/o AA, Difco)、20 g/L瓊脂(Difco)(固體培養物)、22 g/L一水合葡萄糖或20 g/L乳糖與0.79 g/L CSM或0.77 g/L CSM-Ura之具有完全補充混合物(SD CSM)或CSM脫落(CSM drop-out)(SD CSM-Ura)的合成限定酵母培養基(MP 生物醫學)上生長。The strains were grown in agar containing 6.7 g/L yeast nitrogen-free amino acids (YNB w/o AA, Difco), 20 g/L agar (Difco) (solid culture), 22 g/L glucose monohydrate or 20 g/L Synthetic Defined Yeast Medium (MP Biomedical) with Complete Supplementation Mix (SD CSM) or CSM drop-out (SD CSM-Ura) of L lactose with 0.79 g/L CSM or 0.77 g/L CSM-Ura grow on.
菌株strain
由Bachmann等人(Yeast (1998) 14:115-32)創建的啤酒酵母菌( Saccharomyces cerevisiae)BY4742從Euroscarf培養物中心獲得。所有突變體菌株均採用Gietz的方法(Yeast 11:355-360, 1995)Y藉由同源重組或質體轉形產生。 Saccharomyces cerevisiae BY4742 created by Bachmann et al. (Yeast (1998) 14:115-32) was obtained from the Euroscarf Culture Center. All mutant strains were generated by homologous recombination or plastid transformation using the method of Gietz (Yeast 11:355-360, 1995).
質體plastid
酵母菌表現質體p2a_2µ(Chan 2013, Plasmid 70, 2-17)用於啤酒酵母菌的表現外源基因。此質體包含胺苄青黴素抗性基因和細菌複製起點,以允許在大腸桿菌中進行選擇和維持。質體進一步含有2μ酵母ori和Ura3選擇標誌物以用於在酵母中的選擇和維持。The yeast expression plastid p2a_2µ (Chan 2013, Plasmid 70, 2-17) was used to express foreign genes in Saccharomyces cerevisiae. This plastid contains an ampicillin resistance gene and a bacterial origin of replication to allow selection and maintenance in E. coli. The plastids further contained 2μ yeast ori and Ura3 selectable markers for selection and maintenance in yeast.
在一實施例中,酵母菌表現質體p2a_2µ可經修飾以獲得如WO18122225所述之來自大腸桿菌突變果糖-6-磷酸轉胺酶glmS*54(其與野生型glmS蛋白質(UniProt ID P17169)不同在於A39T、R250C和G472S突變)、來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)、例如包括aphA、Cof、HisB、OtsB、SurE、Yaed、YcjU、YedP、YfbT、YidA、YigB、YihX、YniC、YqaB、YrbL、AppA、Gph、SerB、YbhA、YbiV、YbjL、Yfb、YieH、YjgL、YjjG、YrfG及YbiU的大腸桿菌基因中任一或多個基因、或來自惡臭假單胞菌的PsMupP、來自啤酒酵母菌的ScDOG1或來自枯草芽孢桿菌的BsAraL之磷酸酶,如WO18122225所述。該修飾的質體可進一步經修飾以獲得選自包括以下列舉的N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶SEQ ID NO:03、04、05、06、07、08、10、11、12及13及/或選自包括以下列舉的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41。In one example, the yeast expressed plastid p2a_2µ can be modified to obtain the mutant fructose-6-phosphate transaminase glmS*54 from E. coli as described in WO18122225 (which differs from the wild-type glmS protein (UniProt ID P17169) in A39T, R250C and G472S mutations), N-acetylglucosamine-6-phosphotransferase GNA1 from Saccharomyces cerevisiae (UniProt ID P43577), including for example aphA, Cof, HisB, OtsB, SurE, Yaed, YcjU, YedP , YfbT, YidA, YigB, YihX, YniC, YqaB, YrbL, AppA, Gph, SerB, YbhA, YbiV, YbjL, Yfb, YieH, YjgL, YjjG, YrfG and YbiU of any one or more of the E. coli genes, Or the phosphatase of PsMupP from Pseudomonas putida, ScDOG1 from Saccharomyces cerevisiae or BsAraL from Bacillus subtilis, as described in WO18122225. The modified plastids can be further modified to obtain N-acetylglucosamine b-1,3-galactosyltransferases selected from the group consisting of SEQ ID NOs: 03, 04, 05, 06, 07, 08, 10, 11, 12 and 13 and/or selected from the group consisting of N-acetylglucosamine b-1,4-galactosyltransferase SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21 , 22, 23, 26, 27, 28, 31, 32, 33, 34, 35, 36, 39, 40 and 41.
在產生GDP-岩藻糖的一實施例中,酵母菌表現質體例如p2a_2µ_Fuc(Chan 2013, Plasmid 70, 2-17)可以持續型轉錄單元進行修飾,該持續型轉錄單元為針對例如來自乳酸克魯維酵母( K. lactis)的LAC12(UniProt ID P07921)之乳糖通透酶、例如來自大腸桿菌的gmd(UniProt ID P0AC88)之GDP-甘露糖 4,6-脫水酶、以及例如來自大腸桿菌的fcl(UniProt ID P32055)之GDP-L-岩藻糖合成酶。酵母菌表現質體p2a_2μ_Fuc2可使用作為p2a_2μ_Fuc質體的替代表現質體,該質體包含胺苄青黴素抗性基因、細菌ori、2μ酵母ori和Ura3選擇標誌物持續型轉錄單元,其用於例如來自乳酸克魯維酵母的LAC12(UniProt ID P07921)之乳糖通透酶、例如來自大腸桿菌的fucP(UniProt ID P11551)之岩藻糖通透酶、以及例如來自脆弱擬桿菌的fkp(UniProt ID SUV40286.1)之具有岩藻糖激酶/岩藻糖-1-磷酸鹽鳥苷酸轉移酶活性之雙官能酶。為了進一步生產岩藻糖基化寡糖,p2a_2µ_Fuc及其變體p2a_2µ_Fuc2還包含一個持續型轉錄單元,其用於例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)之α-1,2-岩藻糖基轉移酶及/或例如來自幽門螺旋桿菌的HpFucT(UniProt ID O30511)之α-1,3-岩藻糖基轉移酶。 In one example for the production of GDP-fucose, yeast expressed plastids such as p2a_2µ_Fuc (Chan 2013, Plasmid 70, 2-17) can be modified with a persistent transcription unit for, e.g., from lactate gram Lactose permease from LAC12 (UniProt ID P07921) of K. lactis , GDP-mannose 4,6-dehydratase from gmd (UniProt ID P0AC88) from E. coli, and e.g. from E. coli GDP-L-fucose synthase of fcl (UniProt ID P32055). The yeast expression plastid p2a_2μ_Fuc2 can be used as an alternative to the p2a_2μ_Fuc plastid containing the ampicillin resistance gene, bacterial ori, 2μ yeast ori, and Ura3 selectable marker persistent transcription units, which are used, for example, from Lactose permease from LAC12 of Kluyveromyces lactis (UniProt ID P07921), fucose permease from eg fucP from Escherichia coli (UniProt ID P11551), and eg fkp from Bacteroides fragilis (UniProt ID SUV40286. 1) A bifunctional enzyme having fucose kinase/fucose-1-phosphate guanylate transferase activity. For further production of fucosylated oligosaccharides, p2a_2µ_Fuc and its variant p2a_2µ_Fuc2 also contain a continuous transcription unit for, for example, α-1,2- Fucosyltransferase and/or alpha-1,3-fucosyltransferase such as HpFucT (UniProt ID 030511) from Helicobacter pylori.
在產生UDP-半乳糖的一實施例中,酵母菌表現質體可衍生自pRS420-質體系列(Christianson et al., 1992, Gene 110: 119-122),該質體系列含有HIS3選擇標誌物及用於例如來自大腸桿菌的galE(UniProt ID P09147)之UDP-葡萄糖-4-表異構酶的持續型轉錄單元。此質體可進一步以例如來自乳酸克魯維酵母的LAC12(UniProt ID P07921)之乳糖通透酶和例如來自腦膜炎雙球菌的lgtA(UniProt ID Q9JXQ6)之半乳糖苷β-1,3-N-乙醯基葡糖胺轉移酶活性的持續型轉錄單元進行修飾,以產生LN3。為了進一步產生LN3衍生的寡糖,例如LNT,突變LN3產生菌株進一步以選自包含SEQ ID NO:03、04、05、06、07、08、10、11、12及13的列舉的N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶的持續型轉錄單元進行修飾。為了進一步產生LN3衍生的寡糖,例如LNnT,突變LN3產生菌株進一步以選自包含SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41的列舉的N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶的持續型轉錄單元進行修飾。 In one example for the production of UDP-galactose, yeast expressed plastids can be derived from the pRS420-plastid series (Christianson et al. , 1992, Gene 110: 119-122), which contains the HIS3 selectable marker and a continuous transcription unit for UDP-glucose-4-epimerase such as galE from E. coli (UniProt ID P09147). This plastid can be further treated with lactose permease such as LAC12 from Kluyveromyces lactis (UniProt ID P07921) and galactoside β-1,3-N such as lgtA from Neisseria meningitidis (UniProt ID Q9JXQ6). - The persistent transcription unit of acetylglucosaminyltransferase activity is modified to generate LN3. For further production of LN3-derived oligosaccharides, such as LNT, mutant LN3 producing strains are further selected from the list of N-B Modification of the continuous transcription unit of glucosamine beta-1,3-galactosyltransferase. For further production of LN3-derived oligosaccharides, such as LNnT, mutant LN3 producing strains are further selected from the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 31 , 32, 33, 34, 35, 36, 39, 40, and 41, the continuous transcription unit of the enumerated N-acetylglucosamine beta-1,4-galactosyltransferase was modified.
在產生唾液酸及CMP-唾液酸的一實施例中,酵母菌表現質體可衍生自pRS420-質體系列(Christianson et al., 1992, Gene 110: 119-122),該質體系列含有TRP1選擇標誌物及持續型轉錄單元,該持續型轉錄單元用於一或多個複製的L-麩醯胺—D-果糖-6-磷酸轉胺酶,例如,來自大腸桿菌的突變體glmS*54(與UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006))、一個磷酸酶,例如,包含aphA、Cof、HisB、OtsB、SurE、Yaed、YcjU、YedP、YfbT、YidA、YigB、YihX、YniC、YqaB、YrbL、AppA、Gph、SerB、YbhA、YbiV、YbjL、Yfb、YieH、YjgL、YjjG、YrfG及YbiU的大腸桿菌基因中任一或多個、或者來自惡臭假單胞菌的PsMupP、來自啤酒酵母菌的ScDOG1或來自枯草芽孢桿菌的BsAraL,如WO18122225所述、例如來自卵形擬桿菌的AGE(UniProt ID A7LVG6)之N-乙醯葡萄糖胺2-表異構酶、例如來自腦膜炎雙球菌的N-乙醯神經胺酸合成酶(UniProt ID E0NCD4)以及例如來自空腸曲桿菌的NeuA酶(UniProt ID Q93MP7)之N-醯基神經胺酸胞苷醯轉移酶、來自流感嗜血桿菌的NeuA酶(GenBank No. AGV11798.1)或來自出血性巴氏桿菌的NeuA酶(GenBank No. AMK07891.1)。可選地,包括一或多個複製的N-乙醯葡萄糖胺-6-磷酸轉移酶的持續型轉錄單元例如更添加例如來自啤酒酵母菌的GNA1(UniProt ID P43577)。為了產生唾液酸化寡醣,該質體進一步包括持續型轉錄單元,其用於例如來自乳酸克魯維酵母的LAC12(UniProt ID P07921)之乳糖通透酶、以及一或多個複製的β-半乳糖苷α-2,3-唾液酸轉移酶,例如來自出血性巴氏桿菌的PmultST3(UniProt ID Q9CLP3)或由具有β-半乳糖苷α-2,3-唾液酸轉移酶活性的UniProt ID Q9CLP3的胺基酸殘基1至268所組成的PmultST3樣多肽及、來自腦膜炎雙球菌的NmeniST3(GenBank No. ARC07984.1)或來自出血性巴氏桿菌出血性亞種菌株Pm70的PmultST2(GenBank No. AAK02592.1)、β-半乳糖苷α-2,6-唾液酸轉移酶,例如來自海鱺發光桿菌的PdST6(UniProt ID O66375)或由具有β-半乳糖苷α-2,6-唾液酸轉移酶活性的UniProt ID O66375的胺基酸殘基108至497所組成的PdST6樣多肽或來自發光桿菌屬( Photobacterium sp)JT-ISH-224的P-JT-ISH-224-ST6(UniProt ID A8QYL1)或由具有β-半乳糖苷α-2,6-唾液酸轉移酶活性的UniProt ID A8QYL1的胺基酸殘基18至514所組成的P-JT-ISH-224-ST6樣多肽及/或例如來自小鼠(UniProt ID Q64689)的α-2,8-唾液酸轉移酶。 In one example for the production of sialic acid and CMP-sialic acid, yeast expressed plastids can be derived from the pRS420-plastid series (Christianson et al. , 1992, Gene 110: 119-122), which contains TRP1 Selectable markers and persistent transcription units for one or more replicated L-glutamine-D-fructose-6-phosphate transaminase enzymes, e.g., mutant glmS*54 from Escherichia coli (different from wild-type E. coli glmS of UniProt ID P17169 with A39T, R250C, and G472S mutations, as described by Deng et al. (Biochimie 88, 419-29 (2006)), a phosphatase, e.g., comprising aphA, Cof, HisB, OtsB, SurE, Yaed, YcjU, YedP, YfbT, YidA, YigB, YihX, YniC, YqaB, YrbL, AppA, Gph, SerB, YbhA, YbiV, YbjL, Yfb, YieH, YjgL, YjjG, YrfG and Any one or more of the E. coli genes of YbiU, or PsMupP from Pseudomonas putida, ScDOG1 from Saccharomyces cerevisiae, or BsAraL from Bacillus subtilis, as described in WO18122225, such as AGE from Bacteroides ovale ( N-acetylglucosamine 2-epimerase of UniProt ID A7LVG6, eg N-acetylneuraminic acid synthase from Neisseria meningitidis (UniProt ID EONCD4) and eg NeuA enzyme from Aspergillus jejuni (UniProt ID Q93MP7), NeuA from Haemophilus influenzae (GenBank No. AGV11798.1) or NeuA from Pasteurella haemorrhagic (GenBank No. AMK07891.1) ). Optionally, a continuous transcription unit comprising one or more replicated N-acetylglucosamine-6-phosphotransferase enzymes is further added, for example, GNA1 from Saccharomyces cerevisiae (UniProt ID P43577). To generate sialylation An oligosaccharide, the plastid further comprising a persistent transcription unit for, for example, the lactose permease from LAC12 of Kluyveromyces lactis (UniProt ID P07921 ), and one or more replicated β-galactoside α- 2,3-Sialyltransferases such as PmultST3 from Pasteurella haemorrhagic (UniProt ID Q9CLP3) or amino acids from UniProt ID Q9CLP3 with β-galactoside α-2,3-sialyltransferase activity The PmultST3-like polypeptide consisting of residues 1 to 268 and, from meningococcal Coccus NmeniST3 (GenBank No. ARC07984.1) or PmultST2 (GenBank No. AAK02592.1) from Pasteurella haemorrhagic subsp. haemorrhagic strain Pm70, β-galactoside α-2,6-sialyltransferase , such as PdST6 (UniProt ID O66375) from Photobacillus marina or PdST6 consisting of amino acid residues 108 to 497 of UniProt ID O66375 with β-galactoside α-2,6-sialyltransferase activity Like polypeptide or P-JT-ISH-224-ST6 (UniProt ID A8QYL1) from Photobacterium sp JT-ISH-224 or by having β-galactoside α-2,6-sialyltransferase activity A P-JT-ISH-224-ST6-like polypeptide consisting of amino acid residues 18 to 514 of UniProt ID A8QYL1 and/or e.g. α-2,8-sialyltransferase from mouse (UniProt ID Q64689) .
較佳但非必須地,醣基轉移酶蛋白及/或參與核苷酸活化糖合成的蛋白質在N端融合到SUMOstar標籤(例如從pYSUMOstar,Life Sensors,Malvern,PA獲得)以提高其溶解度。Preferably, but not necessarily, glycosyltransferase proteins and/or proteins involved in nucleotide-activated sugar synthesis are N-terminally fused to a SUMOstar tag (eg, obtained from pYSUMOstar, Life Sensors, Malvern, PA) to improve solubility.
可選地,以編碼例如Hsp31、Hsp32、Hsp33、Sno4、Kar2、Ssb1、Sse1、Sse2、Ssa1、Ssa2、Ssa3、Ssa4、Ssb2、Ecm10、Ssc1、Ssq1、Ssz1、Lhs1、Hsp82、Hsc82、Hsp78、Hsp104、Tcp1、Cct4、Cct8、Cct2、Cct3、Cct5、Cct6或Cct7(Gong et al., 2009, Mol. Syst. Biol. 5: 275)的伴護蛋白的持續型轉錄單元的敲入修飾突變酵母菌株。Optionally, to encode e.g. Hsp31, Hsp32, Hsp33, Sno4, Kar2, Ssb1, Sse1, Sse2, Ssa1, Ssa2, Ssa3, Ssa4, Ssb2, Ecm10, Sscl, Ssq1, Ssz1, Lhs1, Hsp82, Hsc82, Hsp78, Hsp104 , Tcp1, Cct4, Cct8, Cct2, Cct3, Cct5, Cct6 or Cct7 (Gong et al., 2009, Mol. Syst. Biol. 5: 275) Knock-in modification of the persistent transcription unit of the chaperone protein mutant yeast strains .
質體維持在購自Invitrogen的宿主大腸桿菌DH5α(F -, phi80d lacZdeltaM15, delta( lacZYA- argF)U169, deoR, recA1, endA1, hsdR17(rk -, mk +), phoA, supE44, lambda -, thi-1, gyrA96, relA1)。 Plastids were maintained in host E. coli DH5α (F - , phi80d lacZ deltaM15, delta( lacZYA - argF )U169, deoR , recA1 , endA1 , hsdR17(rk - , mk + ), phoA , supE44 , lambda - , purchased from Invitrogen thi -1, gyrA96 , rel A1).
異源及同源表現Heterologous and Homologous Expression
需要表現的基因,無論是來自質體還是來自基因組,都是由以下公司之一以合成方法合成:DNA2.0、Gen9、IDT或Twist Bioscience。The genes to be expressed, whether from the plastid or the genome, are synthesized synthetically by one of the following companies: DNA2.0, Gen9, IDT or Twist Bioscience.
藉由針對表現宿主的密碼子使用優化密碼子的使用,可以進一步促進表現。利用供應商的工具對基因進行優化。Expression can be further facilitated by optimizing codon usage for the codon usage of the expression host. Genes were optimized using vendor tools.
培養條件Culture conditions
一般而言,酵母菌菌株最初生長在SD-CSM平板上以獲得單一菌落。這些平板於30℃生長2-3天。Generally, yeast strains are initially grown on SD-CSM plates to obtain single colonies. The plates were grown at 30°C for 2-3 days.
從單一菌落開始,預培養物於30℃,以200rpm搖動在5mL中過夜生長。隨後的125ml搖瓶實驗在25 mL培養基中接種2%的此類預培養物。這些搖瓶於30℃使用200rpm的軌道振盪進行培養。Starting from a single colony, the preculture was grown overnight in 5 mL at 30°C with shaking at 200 rpm. Subsequent 125 ml shake flask experiments were inoculated with 2% of these precultures in 25 mL of medium. The flasks were incubated at 30°C using orbital shaking at 200 rpm.
基因表現啟動子gene expression promoter
基因利用由Blazeck(Biotechnology and Bioengineering, Vol. 109, No. 11, 2012)所述的合成持續型啟動子表現。Genes were expressed using synthetic persistent promoters as described by Blazeck (Biotechnology and Bioengineering, Vol. 109, No. 11, 2012).
實施例Example 2929 :啤酒酵母菌中: In Saccharomyces cerevisiae GlcNAcGlcNAc 及and LacNAcLacNAc ;或;or GlcNAcGlcNAc 及and LNBLNB 的產生generation
另一實施例提供以啤酒酵母菌形式的真核生物用於實施本發明的用途。使用如實施例28所述的菌株、質體及方法,生成產生GlcNAc和LacNAc的突變啤酒酵母菌菌株。此些修飾包括額外的持續型表現單元,其用於大腸桿菌的突變果糖-6-磷酸轉胺酶glmS*54(與具有UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變)、啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)、選自以下列舉的一磷酸酶,該列舉包括:包含aphA、Cof、HisB、OtsB、SurE、Yaed、YcjU、YedP、YfbT、YidA、YigB、YihX、YniC、YqaB、YrbL、AppA、Gph、SerB、YbhA、YbiV、YbjL、Yfb、YieH、YjgL、YjjG、YrfG及YbiU的大腸桿菌基因中任一或多個、或來自惡臭假單胞菌的PsMupP、來自啤酒酵母菌的ScDOG1以及來自枯草芽孢桿菌的BsAraL,如WO18122225所述,以及SEQ ID NO 15的腦膜炎雙球菌的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶LgtB。突變啤酒酵母菌菌株能夠以葡萄糖或甘油為碳源生長,將碳源轉化為果糖-6-磷酸鹽,然後藉由新表現的果糖-6-磷酸轉胺酶、N-乙醯葡萄糖胺-6-磷酸轉移酶、磷酸酶及N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶的活性將其轉化為GlcNAc和隨後的LacNAc。Another embodiment provides the use of eukaryotic organisms in the form of Saccharomyces cerevisiae for practicing the present invention. Using the strains, plastids and methods as described in Example 28, mutant S. cerevisiae strains producing GlcNAc and LacNAc were generated. Such modifications included an additional persistent expression unit for the mutant fructose-6-phosphate transaminase glmS*54 of E. coli (different from wild-type E. coli glmS with UniProt ID P17169 with A39T, R250C and G472S mutation), Saccharomyces cerevisiae N-acetylglucosamine-6-phosphotransferase GNA1 (UniProt ID P43577), a monophosphatase selected from the list comprising aphA, Cof, HisB, OtsB, SurE , Yaed, YcjU, YedP, YfbT, YidA, YigB, YihX, YniC, YqaB, YrbL, AppA, Gph, SerB, YbhA, YbiV, YbjL, Yfb, YieH, YjgL, YjjG, YrfG and YbiU E. coli genes One or more, or PsMupP from Pseudomonas putida, ScDOG1 from Saccharomyces cerevisiae and BsAraL from Bacillus subtilis as described in WO18122225 and N-acetylglucose from Neisseria meningitidis of SEQ ID NO 15 Amine b-1,4-galactosyltransferase LgtB. Mutant S. cerevisiae strains are able to grow on glucose or glycerol as carbon source, convert the carbon source to fructose-6-phosphate, and then use the newly expressed fructose-6-phosphate transaminase, N-acetylglucosamine-6 - The activities of phosphotransferase, phosphatase and N-acetylglucosamine b-1,4-galactosyltransferase convert it to GlcNAc and subsequently LacNAc.
該菌株的預培養物在含有22 g/L葡萄糖的5 mL合成成分確定培養基SD-CSM中進行,並如實施例28所述在30°C下生長。然後將此預培養物接種在搖瓶中的25 mL培養基,其中含有10 g/L葡萄糖作為唯一碳源並在30°C下生長。定期取樣並如實施例1中所述地測量GlcNAc和LacNAc的產生。在類似實驗中,含有SEQ ID NO 03的大腸桿菌O55:H7的N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶WbgO,而不是SEQ ID NO 15的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶LgtB的類似酵母菌株能夠產生GlcNAc和LNB。A pre-culture of this strain was performed in 5 mL of defined synthetic medium SD-CSM containing 22 g/L glucose and grown at 30°C as described in Example 28. This preculture was then inoculated into 25 mL of medium in shake flasks containing 10 g/L glucose as the sole carbon source and grown at 30°C. Samples were taken periodically and the production of GlcNAc and LacNAc was measured as described in Example 1 . In a similar experiment, the N-acetylglucosamine b-1,3-galactosyltransferase WbgO of E. coli O55:H7 contained SEQ ID NO 03, but not the N-acetylglucosamine b of SEQ ID NO 15 - Similar yeast strains of the 1,4-galactosyltransferase LgtB are capable of producing GlcNAc and LNB.
實施例Example 3030 :用於具有: for having PFAMPFAM 域area PF00535PF00535 的of N-N- 乙醯葡萄糖胺Acetyl Glucosamine b-1,3-b-1,3- 半乳糖基轉移酶基因的galactosyltransferase gene RegExRegEx 檢索retrieve
針對具有PFAM域PF00535的N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶基因執行RegEx分析,以找到包含具有SEQ ID NO 01的[AGPS]XXLN(X n)RXDXD的成員,其中X為是任何胺基酸,其中n為12至17、或找到包含具有SEQ ID NO 02的序列PXXLN(X n)RXDXD(X m)[FWY]XX[HKR]XX[NQST]的成員,其中X是任何胺基酸,其中n是12至17且m是100至115。為此,如Pfam數據庫版本Pfam 33.1(2020年6月11日發佈)註釋的所有具有PFAM域PF00535的N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶基因均從UniProt數據庫(2020年7月03日發佈)下載並根據如得自https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2(2019年4月06日發佈)的方法分析該模體的存在。來自該RegEx檢索的相應成員包括:A0A354SD93、A0A108TBL4、A0A1G2TK10、A0A1G2UER6、A0A1G2UVR8、T1RPX3、U4SLB4、T1RNY4、T1RQ38、A0A377HVE3、A0A0M7B6J0、A0A0K1Q500、A0A3S0CAP8、A0A5C8BKY0、A0A0G0R169、A0A5C6Y259、A0A5C9C3N6、A0A1G7VWF9、A0A193KHC3、A0A5N1GML0、A0A3N2I9V8, A0A2I1RGW1、A0A5N1JGF2、A0A538SYW6、N8U0B3、A0A1G8DZV8、A0A538U133、A0A538SYT2、F3PEK1、B0NR63、A0A3D3JDC2、A0A5C5Y5M7、A0A1G9SAW9、E3HB28及A0A538TXM3。 RegEx analysis was performed on the N-acetylglucosamine b-1,3-galactosyltransferase gene with PFAM domain PF00535 to find members comprising [AGPS]XXLN( Xn )RXDXD with SEQ ID NO 01, wherein X is any amino acid where n is 12 to 17, or a member is found comprising the sequence PXXLN( Xn )RXDXD( Xm )[FWY]XX[HKR]XX[NQST] having SEQ ID NO 02, wherein X is any amino acid where n is 12 to 17 and m is 100 to 115. To this end, all N-acetylglucosamine b-1,3-galactosyltransferase genes with PFAM domain PF00535 as annotated in Pfam database version Pfam 33.1 (released June 11, 2020) were obtained from the UniProt database (2020 Published 03 Jul 2019) downloaded and analyzed the model according to the method as obtained from https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2 (Published 06 Apr 2019) the existence of the body.來自該RegEx檢索的相應成員包括:A0A354SD93、A0A108TBL4、A0A1G2TK10、A0A1G2UER6、A0A1G2UVR8、T1RPX3、U4SLB4、T1RNY4、T1RQ38、A0A377HVE3、A0A0M7B6J0、A0A0K1Q500、A0A3S0CAP8、A0A5C8BKY0、A0A0G0R169、A0A5C6Y259、A0A5C9C3N6、A0A1G7VWF9、A0A193KHC3、A0A5N1GML0、A0A3N2I9V8 , A0A2I1RGW1, A0A5N1JGF2, A0A538SYW6, N8U0B3, A0A1G8DZV8, A0A538U133, A0A538SYT2, F3PEK1, B0NR63, A0A3D3MDC2, A0A5C5Y5M7, A0A1G9SAW9, E3HB28TX and A0A538.
實施例Example 3131 :用於其他: for other N-N- 乙醯葡萄糖胺Acetyl Glucosamine b-1,3-b-1,3- 半乳糖基轉移酶或Galactosyltransferase or N-N- 乙醯葡萄糖胺Acetyl Glucosamine b-1,4-b-1,4- 半乳糖基轉移酶基因的galactosyltransferase gene RegExRegEx 檢索retrieve
可針對具有PFAM域IPR002659的N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶基因執行RegEx分析,以找到包含具有SEQ ID NO 09的序列KT(X n)[FY]XXKXDXD(X m)[FHY]XXG(X,無A、G、S)(X p)X(無F、H、W、Y)[DE]D[ILV]XX[AG]的成員,其中X是任何胺基酸,其中n是13至16,m是35至70,且p是20至45。為此,如Pfam數據庫版本Pfam 33.1(2020年6月11日發佈)註釋的所有具有PFAM域IPR002659的N-乙醯葡萄糖胺b-1,3-半乳糖基轉移酶基因均從UniProt數據庫(2020年7月03日發佈)下載並根據如得自https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2(2019年4月06日發佈)的方法分析該模體的存在。 RegEx analysis can be performed on the N-acetylglucosamine b-1,3-galactosyltransferase gene with PFAM domain IPR002659 to find a sequence KT( Xn )[FY]XXKXDXD(X with SEQ ID NO 09 m ) [FHY]XXG(X, no A, G, S) (X p ) a member of X (no F, H, W, Y) [DE]D[ILV]XX[AG], where X is any amine base acid, wherein n is 13 to 16, m is 35 to 70, and p is 20 to 45. To this end, all N-acetylglucosamine b-1,3-galactosyltransferase genes with PFAM domain IPR002659 as annotated in Pfam database version Pfam 33.1 (released June 11, 2020) were obtained from the UniProt database (2020 Published 03 Jul 2019) downloaded and analyzed the model according to the method as obtained from https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2 (Published 06 Apr 2019) the existence of the body.
可針對具有PFAM域PF01755的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶基因執行相似的RegEx分析,以找到具有SEQ ID NO 14的序列EXXCXXSHXX[ILV][FWY](X n)EDD(X m)[ACGST]XXYX[ILMV]的成員,其中X是任何胺基酸,其中n為13至15且m是50至76。為此,如Pfam數據庫版本Pfam 33.1(2020年6月11日發佈)註釋的所有具有PFAM域PF01755的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶基因均從UniProt數據庫(2020年7月03日發佈)下載並根據如得自https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2(2019年4月06日發佈)的方法分析該模體的存在。 A similar RegEx analysis can be performed on the N-acetylglucosamine b-1,4-galactosyltransferase gene with PFAM domain PF01755 to find the sequence EXXCXXSHXX[ILV][FWY]( Xn with SEQ ID NO 14 A member of )EDD( Xm )[ACGST]XXYX[ILMV], wherein X is any amino acid, wherein n is 13 to 15 and m is 50 to 76. To this end, all N-acetylglucosamine b-1,4-galactosyltransferase genes with PFAM domain PF01755 as annotated in Pfam database version Pfam 33.1 (released June 11, 2020) were obtained from the UniProt database (2020 Published 03 Jul 2019) downloaded and analyzed the model according to the method as obtained from https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2 (Published 06 Apr 2019) the existence of the body.
相似地,可針對具有PFAM域PF00535的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶基因執行RegEx分析,以找到具有SEQ ID NO 24的序列R[KN]XXXXXXXGXXXX[FL]XDXD(X n)[FHW]XXX[FHNY](X m)E[DE]的成員,其中X是任何胺基酸,其中n是50至75,m是10至30、或具有SEQ ID NO 25的序列R[KN]XXXXXXXGXXXXFXDXD(X n)[FHW]XXX[FHNY](X m)E[DE](X p)[FWY]XX[HKR]XX[NQST]的成員,其中X是任何胺基酸,其中n是50至75,m是10至30,且p是20至25。為此,如Pfam數據庫版本Pfam 33.1(2020年6月11日發佈)註釋的所有具有PFAM域PF00535的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶基因均從UniProt數據庫(2020年7月03日發佈)下載並根據如得自https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2(2019年4月06日發佈)的方法分析該模體的存在。 Similarly, RegEx analysis can be performed on the N-acetylglucosamine b-1,4-galactosyltransferase gene with PFAM domain PF00535 to find the sequence R[KN]XXXXXXXGXXXX[FL]XDXD with SEQ ID NO 24 A member of (X n )[FHW]XXX[FHNY](X m )E[DE], wherein X is any amino acid, wherein n is 50 to 75, m is 10 to 30, or having SEQ ID NO 25 A member of the sequence R[KN]XXXXXXXGXXXXFXDXD( Xn )[FHW]XXX[FHNY]( Xm )E[DE](Xp)[ FWY ]XX[HKR]XX[NQST], where X is any amino acid , where n is 50 to 75, m is 10 to 30, and p is 20 to 25. To this end, all N-acetylglucosamine b-1,4-galactosyltransferase genes with PFAM domain PF00535 as annotated in Pfam database version Pfam 33.1 (released June 11, 2020) were obtained from the UniProt database (2020 Published 03 Jul 2019) downloaded and analyzed the model according to the method as obtained from https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2 (Published 06 Apr 2019) the existence of the body.
可針對具有PFAM域PF02709而不具有PFAM域PF00535的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶基因執行相似的RegEx分析,以找到具有SEQ ID NO 29的序列[FWY]XX[FY][FWY](X 23)[FWY][GQ]X[DE]D的成員,其中X是任何胺基酸、或者具有SEQ ID NO 30的序列[PV]W[GHNP](X n)[FWY][GQ]X[DE]D的成員,其中X是任何胺基酸,且n為21至24。為此,如Pfam數據庫版本Pfam 33.1(2020年6月11日發佈)註釋的所有具有PFAM域PF02709而不具有PFAM域PF00535的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶基因均從UniProt數據庫(2020年7月03日發佈)下載並根據如得自https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2(2019年4月06日發佈)的方法分析該模體的存在。 A similar RegEx analysis can be performed on the N-acetylglucosamine b-1,4-galactosyltransferase gene with PFAM domain PF02709 but not PFAM domain PF00535 to find the sequence with SEQ ID NO 29 [FWY]XX A member of [FY][FWY]( X23 )[FWY][GQ]X[DE]D, where X is any amino acid, or has the sequence of SEQ ID NO 30 [PV]W[GHNP]( Xn )[FWY][GQ]X[DE]D where X is any amino acid and n is 21 to 24. For this purpose, all N-acetylglucosamine b-1,4-galactosyltransferase genes with PFAM domain PF02709 but not PFAM domain PF00535 as annotated in Pfam database version Pfam 33.1 (released June 11, 2020) Both downloaded from the UniProt database (published 03 Jul 2020) and obtained according to e.g. https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2 (published 06 Apr 2019) ) method to analyze the existence of the motif.
最後,可針對具有PFAM域PF03808的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶基因執行RegEx分析,以找到具有SEQ ID NO 37的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA的成員,其中X是任何胺基酸,且其中n是20至25、或者具有SEQ ID NO 38的序列[ST][FHY]XN(X n)DG(X 16)[HKR]X[ST]FDXX[ST]XA(X m)[HR]XG[FWY](X p)GXGXXXQ[DE]的成員,其中X是任何胺基酸,其中n是20至25,m是40至50,且p是22至30。為此,如Pfam數據庫版本Pfam 33.1(2020年6月11日發佈)註釋的所有具有PFAM域PF03808的N-乙醯葡萄糖胺b-1,4-半乳糖基轉移酶基因均從UniProt數據庫(2020年7月03日發佈)下載並根據如得自https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2(2019年4月06日發佈)的方法分析該模體的存在。 Finally, RegEx analysis can be performed on the N-acetylglucosamine b-1,4-galactosyltransferase gene with the PFAM domain PF03808 to find the sequence [ST][FHY]XN( Xn with SEQ ID NO 37 ) DG(X 16 )[HKR]X[ST]FDXX[ST]XA, wherein X is any amino acid, and wherein n is 20 to 25, or has the sequence of SEQ ID NO 38 [ST][FHY A member of ]XN( Xn )DG(X16)[HKR]X[ST] FDXX [ST]XA( Xm )[HR]XG[FWY](Xp) GXGXXXQ [DE], where X is any amine base acid, wherein n is 20 to 25, m is 40 to 50, and p is 22 to 30. To this end, all N-acetylglucosamine b-1,4-galactosyltransferase genes with PFAM domain PF03808 as annotated in Pfam database version Pfam 33.1 (released June 11, 2020) were obtained from the UniProt database (2020 Published 03 Jul 2019) downloaded and analyzed the model according to the method as obtained from https://towardsdatascience.com/using-regular-expression-in-genetics-with-python-175e2b9395c2 (Published 06 Apr 2019) the existence of the body.
實施例Example 3232 :以修飾的大腸桿菌宿主產生包含: Produced in a modified E. coli host containing 6'-SL6'-SL 、, LacNAcLacNAc 、唾液酸化, sialylation LacNAcLacNAc 、, LN3LN3 、唾液酸化, sialylation LN3LN3 、, LNnTLNnT 及and LSTcLSTc 的寡醣混合物oligosaccharide mixture
大腸桿菌K-12菌株MG1655經修飾以如實施例1所述的產生唾液酸,其包括大腸桿菌nagA、nagB、nanA、nanT、nanE、nanK、LacZ、LacY及LacA基因的剃除及持續型轉錄單元的基因敲入,該持續型轉錄單元包括編碼來自大腸桿菌的乳糖通透酶(LacY)(UniProt ID P02920)、來自大腸桿菌的唾液酸轉運體(nanT)(UniProt ID P41036)、來自大腸桿菌的突變L-麩醯胺—D-果糖-6-磷酸轉胺酶glmS*54(與具有UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變)、來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶(GNA1)(UniProt ID P43577)、來自卵形擬桿菌的N-乙醯葡萄糖胺2-表異構酶(AGE)(UniProt ID A7LVG6)、來自空腸曲桿菌N-乙醯神經胺酸合成酶(NeuB)(UniProt ID Q93MP9)、來自大腸桿菌W的蔗糖轉運體(CscB)(UniProt ID E0IXR1)、來自運動醱酵單胞菌的果糖激酶(Frk)(UniProt ID Q03417)及來自青春雙歧桿菌的蔗糖磷酸化酶(BaSP)(UniProt ID A0ZZH6)之基因。因此,所獲得的產生唾液酸之突變大腸桿菌菌株進一步以持續型轉錄單元的基因敲入進行修飾,以表現來自空腸曲桿菌的N-醯基神經胺酸胞苷醯轉移酶NeuA(UniProt ID Q93MP7)及來自海鱺發光菌( P. damselae)的α-2,6-唾液酸轉移酶PdbST(UniProt ID O66375)而產生6’-唾液酸乳糖。在下一步驟中,突變菌株進一步以包含持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元用於來自腦膜炎雙球菌的半乳糖苷β-1,3-N-乙醯基葡糖胺轉移酶lgtA(UniProt ID Q9JXQ6)及選自包括SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41之列舉的N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶,以產生包括6’-SL、LacNAc、唾液酸化LacNAc、LN3、唾液酸化LN3、LNnT及LSTc(Neu5Ac-a2,6-Gal-b1,4-GlcNAc-b1,3-Gal-b1,4-Glc)的寡醣混合物。根據實施例1(其中,培養基含有蔗糖及乳醣)中提供的培養條件在生長實驗中評估新穎菌株。該菌株在96孔盤中以四個生物學重複進行生長。培養72小時後,收集培養肉湯,並在UPLC分析糖類。 E. coli K-12 strain MG1655 modified to produce sialic acid as described in Example 1, which includes shaving and continuous transcription of the E. coli nagA, nagB, nanA, nanT, nanE, nanK, LacZ, LacY and LacA genes Knock-in of units encoding lactose permease (LacY) from E. coli (UniProt ID P02920), sialic acid transporter (nanT) from E. coli (UniProt ID P41036), The mutant L-glutamine-D-fructose-6-phosphate transaminase glmS*54 (different from wild-type E. coli glmS with UniProt ID P17169 with A39T, R250C and G472S mutations), from Saccharomyces cerevisiae N-acetylglucosamine-6-phosphotransferase (GNA1) (UniProt ID P43577), N-acetylglucosamine 2-epimerase (AGE) from Bacteroides ovale (UniProt ID A7LVG6), from Aspergillus jejuni N-acetylneuraminic acid synthase (NeuB) (UniProt ID Q93MP9), sucrose transporter (CscB) from Escherichia coli W (UniProt ID E0IXR1), fructokinase (Frk) from Zymomonas mobilis ) (UniProt ID Q03417) and the gene for sucrose phosphorylase (BaSP) (UniProt ID A0ZZH6) from Bifidobacterium adolescentis. Therefore, the obtained sialic acid-producing mutant E. coli strain was further modified with a gene knock-in of a persistent transcription unit to express the N-acylneuraminic acid cytidine transferase NeuA (UniProt ID Q93MP7) from A. jejuni. ) and the α-2,6-sialyltransferase PdbST (UniProt ID O66375) from P. damselae to produce 6′-sialyllactose. In the next step, the mutant strain was further modified with a knock-in comprising a persistent transcription unit for galactoside β-1,3-N-acetylglucose from Neisseria meningitidis Aminyltransferase IgtA (UniProt ID Q9JXQ6) and selected from the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 31, 32, 33, 34, 35 , 36, 39, 40 and 41 to enumerate N-acetylglucosamine beta-1,4-galactosyltransferases to produce 6'-SL, LacNAc, sialylated LacNAc, LN3, sialylated LN3, LNnT and LSTc (Neu5Ac-a2,6-Gal-b1,4-GlcNAc-b1,3-Gal-b1,4-Glc) oligosaccharide mixture. Novel strains were evaluated in growth experiments according to the culture conditions provided in Example 1 (wherein the medium contained sucrose and lactose). This strain was grown in four biological replicates in 96-well plates. After 72 hours of incubation, the culture broth was collected and analyzed for carbohydrates by UPLC.
實施例Example 3333 :以修飾的大腸桿菌宿主產生: Produced in a modified E. coli host LN3LN3 、唾液酸化, sialylation LN3LN3 、, LNTLNT 、, LNBLNB 、唾液酸化, sialylation LNBLNB 、, 3’-SL3’-SL 及and LSTaLSTa 的寡醣混合物oligosaccharide mixture
如實施例32所述的修飾以產生唾液酸(Neu5Ac)之大腸桿菌進一步以持續型轉錄單元的基因敲入進行修飾,以表現來自空腸曲桿菌的N-醯基神經胺酸胞苷醯轉移酶NeuA(UniProt ID Q93MP7)及來自出血性巴氏桿菌的α-2,3-唾液酸轉移酶PmultST3(UniProt ID Q9CLP3)以產生3’-唾液乳糖(3’-siayllactose)。在下一步驟中,突變菌株進一步以包含持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元用於來自腦膜炎雙球菌的半乳糖苷β-1,3-N-乙醯基葡糖胺轉移酶lgtA(UniProt ID Q9JXQ6)及選自包括SEQ ID NO:03、04、05、06、07、08、10、11、12或13之列舉的N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶,以產生包括LN3、3’-唾液酸化LN3(Neu5Ac-a2,3-GlcNAc-b1,3-Gal-b1,4-Glc)、LNT、LNB、唾液酸化LNB、3’-SL及LSTa(Neu5Ac-a2,3-Gal-b1,3-GlcNAc-b1,3-Gal-b1,4-Glc)的寡醣混合物。根據實施例1中提供的培養條件(其中,培養基含有蔗糖及乳醣)在生長實驗中評估新穎菌株。該菌株在96孔盤中以四個生物學重複進行生長。培養72小時後,收集培養肉湯,並在UPLC分析糖類。E. coli modified as described in Example 32 to produce sialic acid (Neu5Ac) was further modified with a gene knock-in of a persistent transcription unit to express an N-acyl neuraminic acid cytidine transferase from A. jejuni NeuA (UniProt ID Q93MP7) and α-2,3-sialyltransferase PmultST3 (UniProt ID Q9CLP3) from Pasteurella haemorrhagic to produce 3'-siallactose. In the next step, the mutant strain was further modified with a knock-in comprising a persistent transcription unit for galactoside β-1,3-N-acetylglucose from Neisseria meningitidis Aminyltransferase IgtA (UniProt ID Q9JXQ6) and N-acetylglucosamine beta-1,3 selected from the list comprising SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12 or 13 -Galactosyltransferase to generate LN3, 3'-sialylated LN3 (Neu5Ac-a2,3-GlcNAc-b1,3-Gal-b1,4-Glc), LNT, LNB, sialylated LNB, 3' - Oligosaccharide mixture of SL and LSTa (Neu5Ac-a2,3-Gal-b1,3-GlcNAc-b1,3-Gal-b1,4-Glc). The novel strains were evaluated in growth experiments according to the culture conditions provided in Example 1, wherein the medium contained sucrose and lactose. This strain was grown in four biological replicates in 96-well plates. After 72 hours of incubation, the culture broth was collected and analyzed for carbohydrates by UPLC.
實施例Example 3434 :材料及方法枯草芽孢桿菌: Materials and Methods Bacillus subtilis
培養基culture medium
使用兩種不同的培養基,名為豐富的Luria肉湯(LB)和用於搖瓶的基本培養基(MMsf)。基本培養基使用微量元素混合物。Two different media, named rich Luria broth (LB) and minimal media for shake flasks (MMsf), were used. Minimal medium uses a mixture of trace elements.
微量元素混合物由0.735 g/L CaCl2.2H2O、0.1 g/L MnCl2.2H2O、0.033 g/L CuCl2.2H2O、0.06 g/L CoCl2.6H2O、0.17 g/L ZnCl2、0.0311 g/L H3BO4、0.4 g/L Na2EDTA.2H2O及0.06 g/L Na2MoO4組成。檸檬酸鐵溶液含有0.135 g/L FeCl3.6H2O、1 g/L檸檬酸鈉(Hoch 1973 PMC1212887)。The trace element mixture consisted of 0.735 g/L CaCl2.2H2O, 0.1 g/L MnCl2.2H2O, 0.033 g/L CuCl2.2H2O, 0.06 g/L CoCl2.6H2O, 0.17 g/L ZnCl2, 0.0311 g/L H3BO4, 0.4 g /L Na2EDTA.2H2O and 0.06 g/L Na2MoO4. The ferric citrate solution contained 0.135 g/L FeCl3.6H2O, 1 g/L sodium citrate (Hoch 1973 PMC1212887).
Luria肉湯(LB)培養基由1%胰蛋白腖(Difco, Erembodegem, Belgium)、0.5%酵母菌萃取物(Difco)和0.5%氯化鈉(VWR. Leuven, Belgium)組成。Luria肉湯瓊脂(LBA)盤由具有2 g/L瓊脂(Difco, Erembodegem, Belgium)的LB培養基組成。Luria broth (LB) medium consisted of 1% trypsin (Difco, Erembodegem, Belgium), 0.5% yeast extract (Difco) and 0.5% sodium chloride (VWR. Leuven, Belgium). Luria Broth Agar (LBA) plates consisted of LB medium with 2 g/L agar (Difco, Erembodegem, Belgium).
用於搖瓶實驗的基本培養基(MMsf)由2.00 g/L (NH4)2SO4、7.5 g/L KH2PO4、17.5 g/L K2HPO4、1.25 g/L檸檬酸鈉、0.25 g/L MgSO4.7H2O、0.05 g/L色胺酸、10至30 g/L葡萄糖或其他碳源,包括但不限於果糖、麥芽糖、蔗糖、甘油和麥芽三糖(當在實施例中指定時)、10 ml/L微量元素混合物及10 ml/L檸檬酸鐵溶液組成。使用1M KOH將培養基的pH值設為7。根據實驗,可以添加唾液酸或乳糖作為前驅物。The minimal medium (MMsf) used for shake flask experiments consisted of 2.00 g/L (NH4)2SO4, 7.5 g/L KH2PO4, 17.5 g/L K2HPO4, 1.25 g/L sodium citrate, 0.25 g/L MgSO4.7H2O, 0.05 g/L tryptophan, 10 to 30 g/L glucose or other carbon sources including but not limited to fructose, maltose, sucrose, glycerol and maltotriose (when specified in the examples), 10 ml/L trace Elemental mixture and 10 ml/L ferric citrate solution. The pH of the medium was set to 7 using 1M KOH. Depending on the experiment, sialic acid or lactose can be added as precursors.
例如LB的複合培養基藉由高壓滅菌(121°C,21')且基本培養基藉由過濾(0.22 µm Sartorius)進行滅菌。當必要時,藉由添加抗生素(例如吉歐黴素(zeocin)(20mg/L))使培養基具有選擇性。Complex media such as LB are sterilized by autoclaving (121°C, 21') and minimal media by filtration (0.22 µm Sartorius). When necessary, the medium was made selective by adding antibiotics such as zeocin (20 mg/L).
菌株、質體及突變Strains, plastids and mutations
枯草芽孢桿菌168獲得自Bacillus Genetic Stock Center(Ohio,USA)。Bacillus subtilis 168 was obtained from the Bacillus Genetic Stock Center (Ohio, USA).
用於經由Cre/lox進行基因刪除的質體由Yan等人(Appl. & Environm. Microbial., Sept 2008, p5556-5562)的描述進行構建。如Xue等人(J. Microb. Meth. 34 (1999) 183-191)所述,基因破壞是經由與線性DNA的同源重組和經由電穿孔進行轉形而完成。Liu等人(Metab. Engine. 24 (2014) 61-69)描述基因剃除的方法。此方法使用目標基因的上游和下游的1000bp同源性。Plastids for gene deletion via Cre/lox were constructed as described by Yan et al. (Appl. & Environm. Microbial., Sept 2008, p5556-5562). Gene disruption is accomplished via homologous recombination with linear DNA and transformation via electroporation as described by Xue et al. (J. Microb. Meth. 34 (1999) 183-191). Liu et al. (Metab. Engine. 24 (2014) 61-69) describe a method for genetic shaving. This method uses 1000 bp of homology upstream and downstream of the gene of interest.
由Popp等人(Sci. Rep., 2017, 7, 15158)所述的整合載體使用作為表現載體,如必要時可進一步用於基因整合。用於表現的合適啟動子可以從部件儲存庫(iGem)中獲得:sequence id:Bba_K143012、Bba_K823000、Bba_K823002或Bba_K823003。可使用Gibson組件、Golden Gate組件、Cliva組件、LCR或限制性連接進行選殖。The integration vector described by Popp et al. (Sci. Rep., 2017, 7, 15158) was used as an expression vector and further used for gene integration if necessary. Suitable promoters for expression can be obtained from the component repository (iGem): sequence id: Bba_K143012, Bba_K823000, Bba_K823002 or Bba_K823003. Colonization can be performed using Gibson assemblies, Golden Gate assemblies, Cliva assemblies, LCR or restriction ligation.
在產生LNB的實施例中,枯草芽孢桿菌突變株以包括持續型轉錄單元的基因組敲入進行修飾,該持續型轉錄單元針對來自大腸桿菌的glmS*54(與具有UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006)))、來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)、選自以下列舉的一磷酸酶,該列舉包括:包含aphA、Cof、HisB、OtsB、SurE、Yaed、YcjU、YedP、YfbT、YidA、YigB、YihX、YniC、YqaB、YrbL、AppA、Gph、SerB、YbhA、YbiV、YbjL、Yfb、YieH、YjgL、YjjG、YrfG及YbiU的大腸桿菌基因中任一或多個、或來自惡臭假單胞菌的PsMupP、來自啤酒酵母菌的DOG1或來自枯草芽孢桿菌的AraL,如WO18122225所述、以及選自包括SEQ ID NO:03、04、05、06、07、08、10、11、12或13之列舉的N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶。In the LNB-producing example, the B. subtilis mutant was modified with a genomic knock-in including a persistent transcription unit against glmS*54 from E. coli (compared to wild-type E. coli with UniProt ID P17169 glmS differs by having the A39T, R250C and G472S mutations as described by Deng et al. (Biochimie 88, 419-29 (2006)), the N-acetylglucosamine-6-phosphotransferase GNA1 from Saccharomyces cerevisiae (UniProt ID P43577), a monophosphatase selected from the following list including: comprising aphA, Cof, HisB, OtsB, SurE, Yaed, YcjU, YedP, YfbT, YidA, YigB, YihX, YniC, YqaB, YrbL, Any one or more of the E. coli genes of AppA, Gph, SerB, YbhA, YbiV, YbjL, Yfb, YieH, YjgL, YjjG, YrfG and YbiU, or PsMupP from Pseudomonas putida, DOG1 from Saccharomyces cerevisiae or AraL from Bacillus subtilis, as described in WO18122225, and selected from N-acetylglucosamine beta from the enumeration comprising SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12 or 13 -1,3-Galactosyltransferase.
在產生LacNAc的實施例中,枯草芽孢桿菌突變株以包括持續型轉錄單元的基因組敲入進行修飾,該持續型轉錄單元針對來自大腸桿菌的glmS*54(與具有UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006)))、來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)、選自以下列舉的一磷酸酶,該列舉包括:包含aphA、Cof、HisB、OtsB、SurE、Yaed、YcjU、YedP、YfbT、YidA、YigB、YihX、YniC、YqaB、YrbL、AppA、Gph、SerB、YbhA、YbiV、YbjL、Yfb、YieH、YjgL、YjjG、YrfG及YbiU的大腸桿菌基因中任一或多個、或來自惡臭假單胞菌的PsMupP、來自啤酒酵母菌的DOG1或來自枯草芽孢桿菌的AraL,如WO18122225所述、以及選自包括SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41之列舉的N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶。為了進一步使該LNB或LacNAc岩藻糖基化,LNB或LacNAc產生菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)之α-1,2-岩藻糖基轉移酶及/或來自幽門螺旋桿菌的HpFucT(UniProt ID O30511)之α-1,3-岩藻糖基轉移酶。In the examples for the production of LacNAc, the B. subtilis mutant was modified with a genomic knock-in including a persistent transcription unit against glmS*54 from E. coli (compared to wild-type E. coli with UniProt ID P17169 glmS differs by having the A39T, R250C and G472S mutations as described by Deng et al. (Biochimie 88, 419-29 (2006)), the N-acetylglucosamine-6-phosphotransferase GNA1 from Saccharomyces cerevisiae (UniProt ID P43577), a monophosphatase selected from the following list including: comprising aphA, Cof, HisB, OtsB, SurE, Yaed, YcjU, YedP, YfbT, YidA, YigB, YihX, YniC, YqaB, YrbL, Any one or more of the E. coli genes of AppA, Gph, SerB, YbhA, YbiV, YbjL, Yfb, YieH, YjgL, YjjG, YrfG and YbiU, or PsMupP from Pseudomonas putida, DOG1 from Saccharomyces cerevisiae or AraL from Bacillus subtilis, as described in WO18122225, and selected from the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 31, 32, 33 , 34, 35, 36, 39, 40 and 41 to enumerate the N-acetylglucosamine beta-1,4-galactosyltransferase. In order to further fucosylate the LNB or LacNAc, the LNB or LacNAc producing strain is further modified with a persistent transcription unit directed against, for example, alpha of HpFutC (GenBank No. AAD29863.1) from Helicobacter pylori -1,2-fucosyltransferase and/or α-1,3-fucosyltransferase from HpFucT (UniProt ID O30511) from Helicobacter pylori.
在產生乳糖類的寡醣的實施例中,創建枯草芽孢桿菌突變菌株以含有編碼乳糖輸入蛋白的基因(例如,UniProt ID P02920的大腸桿菌LacY)。對於2'FL、3FL和diFL產生,α-1,2-岩藻糖基轉移酶及/或α-1,3-岩藻糖基轉移酶表現建構體額外添加到菌株中。In an example of the production of lactose-like oligosaccharides, mutant strains of B. subtilis were created to contain the gene encoding the lactose import protein (eg, E. coli LacY of UniProt ID P02920). For 2'FL, 3FL and diFL production, a-1,2-fucosyltransferase and/or a-1,3-fucosyltransferase expression constructs were additionally added to the strains.
在產生乳-N-三糖(LNT-II、LN3、GlcNAc-b1,3-Gal-b1,4-Glc)的實施例中,枯草芽孢桿菌菌株以持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元包含乳糖輸入蛋白(lactose importer)(例如,UniProt ID P02920的大腸桿菌LacY)和半乳糖苷β-1,3-N-乙醯基葡糖胺轉移酶,例如來自腦膜炎雙球菌的LgtA(GenBank: AAM33849.1)。為了LNT產生,LN3產生菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對選自包括SEQ ID NO:03、04、05、06、07、08、10、11、12或13的列舉之N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶,其可經由基因敲入或自表現質體呈遞給菌株。為了LNnT產生,LN3產生菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對選自包括SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41的列舉之N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶。為了進一步使LN3、LNT或LNnT岩藻糖基化,突變菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)之α-1,2-岩藻糖基轉移酶及/或來自幽門螺旋桿菌的HpFucT(UniProt ID O30511)之α-1,3-岩藻糖基轉移酶。In the examples producing lacto-N-trisaccharides (LNT-II, LN3, GlcNAc-b1,3-Gal-b1,4-Glc), the Bacillus subtilis strain was modified with a gene knock-in of a persistent transcription unit, The persistent transcription unit comprises a lactose importer (eg, E. coli LacY of UniProt ID P02920) and a galactoside β-1,3-N-acetylglucosaminyltransferase, such as from meningococcal LgtA of cocci (GenBank: AAM33849.1). For LNT production, the LN3 producing strain was further modified with a persistent transcription unit for a persistent transcription unit selected from the list comprising SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12 or 13 N-acetylglucosamine beta-1,3-galactosyltransferase, which can be presented to strains via gene knock-in or self-expressing plastids. For LNnT production, the LN3-producing strain was further modified with a persistent transcription unit directed against the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27 , 28, 31, 32, 33, 34, 35, 36, 39, 40 and 41 of the enumerated N-acetylglucosamine beta-1,4-galactosyltransferases. To further fucosylate LN3, LNT or LNnT, the mutant strain was further modified with a persistent transcription unit directed to, for example, α-1 of HpFutC (GenBank No. AAD29863.1) from H. pylori ,2-fucosyltransferase and/or α-1,3-fucosyltransferase from HpFucT (UniProt ID O30511) from Helicobacter pylori.
在唾液酸產生的實施例中,突變枯草芽孢桿菌菌株藉由過度表現天然的果糖-6-P-轉胺酶(UniProt ID P0CI73)創建,以促進細胞內葡萄糖胺-6-磷酸鹽庫。此外,nagA、nagB及gamA基因的酶活性藉由基因剃除而破壞且來自啤酒酵母菌的葡萄糖胺-6-P-轉胺酶GNA1(UniProt ID P43577)、來自卵形擬桿菌的N-乙醯葡萄糖胺-2-表異構酶(UniProt ID A7LVG6)和來自空腸曲桿菌的N-乙醯神經胺酸合成酶(UniProt ID Q93MP9)在基因組上過度表現。為了允許唾液酸化寡醣的產生,唾液酸產生菌株進一步以表現建構體進行修飾,該表現建構體包括N-醯基神經胺酸胞苷醯轉移酶,例如來自空腸曲桿菌的NeuA酶(UniProt ID Q93MP7)、來自流行性感冒嗜血桿菌( H. influenzae)的NeuA酶(GenBank No. AGV11798.1)或來自出血性巴氏桿菌的NeuA酶(GenBank No. AMK07891.1)、以及一或多個複製的β-半乳糖苷α-2,3-唾液酸轉移酶,例如來自出血性巴氏桿菌的PmultST3(UniProt ID Q9CLP3)或由具有β-半乳糖苷α-2,3-唾液酸轉移酶活性的UniProt ID Q9CLP3的胺基酸殘基1至268所組成的PmultST3樣多肽及、來自腦膜炎雙球菌的NmeniST3(GenBank No. ARC07984.1)或來自出血性巴氏桿菌出血性亞種菌株Pm70的PmultST2(GenBank No. AAK02592.1)、β-半乳糖苷α-2,6-唾液酸轉移酶,例如來自海鱺發光桿菌的PdST6(UniProt ID O66375)或由具有β-半乳糖苷α-2,6-唾液酸轉移酶活性的UniProt ID O66375的胺基酸殘基108至497所組成的PdST6樣多肽或來自發光桿菌屬JT-ISH-224的P-JT-ISH-224-ST6(UniProt ID A8QYL1)或由具有β-半乳糖苷α-2,6-唾液酸轉移酶活性的UniProt ID A8QYL1的胺基酸殘基18至514所組成的P-JT-ISH-224-ST6樣多肽及/或例如來自小鼠(UniProt ID Q64689)的α-2,8-唾液酸轉移酶。在產生乳糖類唾液酸化寡醣的實施例中,枯草芽孢桿菌突變菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對乳糖輸入蛋白(例如,UniProt ID P02920的大腸桿菌LacY)。 In the example of sialic acid production, mutant B. subtilis strains were created by overexpressing the native fructose-6-P-transaminase (UniProt ID POCI73) to promote intracellular glucosamine-6-phosphate pools. In addition, the enzymatic activities of the nagA, nagB, and gamA genes were disrupted by gene shaving and glucosamine-6-P-transaminase GNA1 (UniProt ID P43577) from Saccharomyces cerevisiae, N-acetyltransferase from Bacteroides ovale Glucosamine-2-epimerase (UniProt ID A7LVG6) and N-acetylneuraminic acid synthase (UniProt ID Q93MP9) from Aspergillus jejuni were genomically overexpressed. To allow the production of sialylated oligosaccharides, the sialic acid producing strains are further modified with expression constructs including an N-acylneuraminic acid cytidine transferase, such as the NeuA enzyme from Aspergillus jejuni (UniProt ID Q93MP7), the NeuA enzyme from H. influenzae (GenBank No. AGV11798.1) or the NeuA enzyme from Pasteurella haemorrhagic (GenBank No. AMK07891.1), and one or more Replicated β-galactoside α-2,3-sialyltransferase, such as PmultST3 (UniProt ID Q9CLP3) from Pasteurella haemorrhage or by a β-galactoside α-2,3-sialyltransferase PmultST3-like polypeptide consisting of amino acid residues 1 to 268 of active UniProt ID Q9CLP3 and NmeniST3 from Neisseria meningitidis (GenBank No. ARC07984.1) or from Pasteurella hemorrhagic subsp. hemorrhagic strain Pm70 PmultST2 (GenBank No. AAK02592.1), β-galactoside α-2,6-sialyltransferase, such as PdST6 (UniProt ID O66375) from Photobacterium A PdST6-like polypeptide consisting of amino acid residues 108 to 497 of UniProt ID O66375 with 2,6-sialyltransferase activity or P-JT-ISH-224-ST6 (UniProt ID A8QYL1) or a P-JT-ISH-224-ST6-like polypeptide consisting of amino acid residues 18 to 514 of UniProt ID A8QYL1 with β-galactoside α-2,6-sialyltransferase activity and /or eg alpha-2,8-sialyltransferase from mouse (UniProt ID Q64689). In an example of the production of lactose-sialylated oligosaccharides, the B. subtilis mutant strain is further modified with a persistent transcription unit directed against a lactose import protein (eg, E. coli LacY of UniProt ID P02920).
為了在蔗糖上生長,突變菌株可額外以持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元包括來自大腸桿菌W的蔗糖轉運體(CscB)(UniProt ID E0IXR1)、來自運動醱酵單胞菌的果糖激酶(Frk)(UniProt ID Q03417)及來自青春雙歧桿菌的蔗糖磷酸化酶(BaSP)(UniProt ID A0ZZH6)。For growth on sucrose, mutant strains can be additionally modified with gene knock-in of persistent transcription units including the sucrose transporter (CscB) (UniProt ID E0IXR1) from E. Fructokinase (Frk) from Bifidobacterium spp. (UniProt ID Q03417) and sucrose phosphorylase (BaSP) from Bifidobacterium adolescentis (UniProt ID A0ZZH6).
異源及同源表現Heterologous and Homologous Expression
需要表現的基因,無論是來自質體還是來自基因組,都是由以下公司之一以合成方法合成:DNA2.0、Gen9、Twist Biosciences或IDT。The genes to be expressed, whether from the plastid or the genome, are synthesized synthetically by one of the following companies: DNA2.0, Gen9, Twist Biosciences or IDT.
藉由針對表現宿主的密碼子使用優化密碼子的使用,可以進一步促進表現。利用供應商的工具對基因進行優化。Expression can be further facilitated by optimizing codon usage for the codon usage of the expression host. Genes were optimized using vendor tools.
培養條件Culture conditions
從冷凍小瓶或LB盤的單一菌落開始96孔微量滴定盤實驗的預培養,在150μL LB中並於37℃在800rpm的軌道振盪器上培養過夜。將此培養物用作96孔方形微量滴定盤的接種物,用400μL MMsf培養基稀釋400倍。每個菌株在96孔盤的多個孔中以生物學重複進行生長。然後將這些最終的96孔培養盤於37℃在800rpm的軌道振盪器上培養72h或更短或更長時間。在培養實驗結束時,從每個孔中取出樣品以測量上清液濃度(細胞離心(spinning down)5分鐘後的細胞外糖濃度),或者藉由在離心細胞之前將培養肉湯在90°C下煮沸15分鐘或在60°C下煮沸60分鐘(=如本文所定義的全肉湯濃度、細胞內及細胞外糖濃度)。Pre-incubation of 96-well microtiter plate experiments was initiated from a single colony in a frozen vial or LB plate, in 150 μL of LB and incubated overnight at 37°C on an orbital shaker at 800 rpm. This culture was used as an inoculum in a 96-well square microtiter plate, diluted 400-fold with 400 μL of MMsf medium. Each strain was grown in biological replicates in multiple wells of a 96-well plate. These final 96-well plates were then incubated at 37°C on an orbital shaker at 800 rpm for 72 h or less or longer. At the end of the culture experiment, samples were taken from each well to measure the supernatant concentration (extracellular sugar concentration after 5 min of spinning down cells), or by placing the culture broth at 90° before centrifuging the cells Boil for 15 minutes at C or 60 minutes at 60°C (= whole broth concentration, intracellular and extracellular sugar concentration as defined herein).
再者,稀釋培養物以測量600 nm的光密度。細胞性能指數或CPI是藉由將寡醣濃度除以生質而確定,與參考菌株相比的相對百分比。生質根據經驗確定為在600 nm處測量的光密度的約1/3。Again, the cultures were diluted to measure the optical density at 600 nm. The Cell Performance Index or CPI is determined by dividing the oligosaccharide concentration by the biomass, as a relative percentage compared to a reference strain. Biomass was empirically determined to be about 1/3 the optical density measured at 600 nm.
實施例Example 3535 :以修飾的枯草芽孢桿菌菌株產生: Produced in a modified Bacillus subtilis strain 2’FLNB2’FLNB
枯草芽孢桿菌菌株首先藉由nagB、glmS及gamA基因的基因剃除以及持續型轉錄單元的基因敲入進行修飾以用於產生LNB及在蔗糖上生長,該持續型轉錄單元包括編碼天然的果糖-6-P-轉胺酶(UniProt ID P0CI73)、來自大腸桿菌的glmS*54(與具有UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006)))、來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)、來自枯草芽孢桿菌的磷酸酶AraL(UniProt ID P94526)、選自包括SEQ ID NO:03、04、05、06、07、08、10、11、12或13之列舉的N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶、來自大腸桿菌W的蔗糖轉運體(CscB)(UniProt ID E0IXR1)、來自運動醱酵單胞菌的果糖激酶(Frk)(UniProt ID Q03417)及來自青春雙歧桿菌的蔗糖磷酸化酶(BaSP)(UniProt ID A0ZZH6)的基因。在下一步驟中,LNB產生菌株以包括針對例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)的α-1,2-岩藻糖基轉移酶之持續型轉錄單元的表現質體進行轉形。Bacillus subtilis strains were first modified for LNB production and growth on sucrose by gene shaving of nagB, glmS, and gamA genes and knock-in of a persistent transcription unit that included encoding a native fructose- 6-P-Transaminase (UniProt ID P0CI73), glmS*54 from E. coli (different from wild-type E. coli glmS with UniProt ID P17169 with A39T, R250C and G472S mutations as described in Deng et al. (Biochimie 88, 419-29 (2006))), N-acetylglucosamine-6-phosphotransferase GNA1 from Saccharomyces cerevisiae (UniProt ID P43577), phosphatase AraL from Bacillus subtilis (UniProt ID P94526) , N-acetylglucosamine beta-1,3-galactosyltransferase selected from the list comprising SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12 or 13, from the large intestine Sucrose transporter (CscB) from Bacillus W (UniProt ID E0IXR1), fructokinase (Frk) from Zymomonas mobilis (UniProt ID Q03417) and sucrose phosphorylase (BaSP) from Bifidobacterium adolescentis (UniProt ID A0ZZH6) gene. In the next step, the LNB-producing strain is transfected with an expressing plastid comprising a persistent transcription unit for, for example, α-1,2-fucosyltransferase from HpFutC (GenBank No. AAD29863.1) from H. pylori shape.
根據實施例34提供的培養條件,在缺乏前驅物的MMsf培養基的生長實驗中評估新穎菌株的2’FLNB產生。培養72小時後,收集培養肉湯,並在UPLC分析糖類。The novel strains were evaluated for 2' FLNB production in growth experiments in MMsf medium lacking the precursor according to the culture conditions provided in Example 34. After 72 hours of incubation, the culture broth was collected and analyzed for carbohydrates by UPLC.
實施例Example 3636 :以修飾的枯草芽孢桿菌菌株產生包括: Produced with modified Bacillus subtilis strains including 6’-SL6'-SL 、, LacNAcLacNAc 、唾液酸化, sialylation LacNAcLacNAc 、, LN3LN3 、唾液酸化, sialylation LN3LN3 、, LNnTLNnT 及and LSTcLSTc 的寡醣混合物oligosaccharide mixture
在第一步驟中,枯草芽孢桿菌菌株以nagA、nagB及gamA基因的基因剃除以及持續型轉錄單元的基因敲入進行修飾以用於產生唾液酸,該持續型轉錄單元包括編碼天然的果糖-6-P-轉胺酶(UniProt ID P0CI73)、來自啤酒酵母菌的葡萄糖胺-6-P-轉胺酶(UniProt ID P43577)、來自卵形擬桿菌的N-乙醯葡萄糖胺-2-表異構酶(UniProt ID A7LVG6)、及來自空腸曲桿菌的N-乙醯神經胺酸合成酶(UniProt ID Q93MP9)的基因。在下一步驟中,突變菌株進一步以持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元包括編碼來自空腸曲桿菌的N-醯基神經胺酸胞苷醯轉移酶NeuA(UniProt ID Q93MP7)及來自海鱺發光桿菌( P. damselae)的α-2,6-唾液酸轉移酶PdbST(UniProt ID O66375)的基因,以產生6’-唾液酸乳糖。在下一步驟中,突變菌株進一步包括持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元針對來自腦膜炎雙球菌的半乳糖苷β-1,3-N-乙醯基葡糖胺轉移酶lgtA(UniProt ID Q9JXQ6)及選自包括SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41之列舉的N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶。根據實施例34提供的培養條件,在含有乳糖作為前驅物的MMsf培養基的生長實驗中評估新穎菌株的包括6’-SL、LacNAc、唾液酸化LacNAc、LN3、唾液酸化LN3、LNnT及LSTc(Neu5Ac-a2,6-Gal-b1,4-GlcNAc-b1,3-Gal-b1,4-Glc)之寡醣混合物的產生。培養72小時後,收集培養肉湯,並在UPLC分析糖類。 In a first step, the Bacillus subtilis strain is modified with gene shaving of the nagA, nagB and gamA genes and knock-in of a persistent transcription unit including a gene encoding a native fructose- 6-P-Transaminase (UniProt ID P0CI73), Glucosamine-6-P-Transaminase from Saccharomyces cerevisiae (UniProt ID P43577), N-Acetyl Glucosamine-2-Table from Bacteroides ovale Isomerase (UniProt ID A7LVG6), and genes for N-acetylneuraminic acid synthase (UniProt ID Q93MP9) from Aspergillus jejuni. In the next step, the mutant strain was further modified with gene knock-in of a persistent transcription unit including NeuA (UniProt ID Q93MP7) encoding the N-acylneuraminic acid cytidine transferase from Aspergillus jejuni and the gene for the α-2,6-sialyltransferase PdbST (UniProt ID O66375) from P. damselae to produce 6′-sialyllactose. In the next step, the mutant strain was further modified to include knock-in of a persistent transcription unit for galactoside β-1,3-N-acetylglucosamine transfer from Neisseria meningitidis Enzyme IgtA (UniProt ID Q9JXQ6) and selected from the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 31, 32, 33, 34, 35, 36 , 39, 40 and 41 enumerated N-acetylglucosamine beta-1,4-galactosyltransferase. According to the culture conditions provided in Example 34, novel strains including 6'-SL, LacNAc, sialylated LacNAc, LN3, sialylated LN3, LNnT and LSTc (Neu5Ac- a2,6-Gal-b1,4-GlcNAc-b1,3-Gal-b1,4-Glc) oligosaccharide mixture. After 72 hours of incubation, the culture broth was collected and analyzed for carbohydrates by UPLC.
實施例Example 3737 :材料及方法麩胺酸棒狀桿菌: Materials and Methods Corynebacterium glutamicum
培養基culture medium
使用兩種不同的培養基,名為豐富胰蛋白腖-酵母菌萃取物(TY)培有基和用於搖瓶的基本培養基(MMsf)。基本培養基使用1000倍庫存微量元素混合物。Two different media were used, named trypsin enriched-yeast extract (TY) medium and minimal medium for shake flasks (MMsf). Minimal medium uses 1000x stock trace element mix.
微量元素混合物由10 g/L CaCl2、10 g/L FeSO4.7H2O、10 g/L MnSO4.H2O、1 g/L ZnSO4.7H2O、0.2 g/L CuSO4、0.02 g/L NiCl2.6H2O、0.2 g/L生物素(pH 7.0)及0.03 g/L原兒茶酸組成。The trace element mixture consists of 10 g/L CaCl2, 10 g/L FeSO4.7H2O, 10 g/L MnSO4.H2O, 1 g/L ZnSO4.7H2O, 0.2 g/L CuSO4, 0.02 g/L NiCl2.6H2O, 0.2 g /L biotin (pH 7.0) and 0.03 g/L protocatechuic acid.
用於搖瓶實驗的基本培養基(MMsf)含有20 g/L (NH4)2SO4、5 g/L尿素、1 g/L KH2PO4、1 g/L K2HPO4、0.25 g/L MgSO4.7H2O、42 g/L MOPS、10至30 g/L葡萄糖或其他碳源,包括但不限於果糖、麥芽糖、蔗糖、甘油和麥芽三糖(當在實施例中指定時)、及1 ml/L微量元素混合物。根據實驗,可以添加乳糖及/或唾液酸作為前驅物。Minimal medium (MMsf) for shake flask experiments contains 20 g/L (NH4)2SO4, 5 g/L urea, 1 g/L KH2PO4, 1 g/L K2HPO4, 0.25 g/L MgSO4.7H2O, 42 g/L L MOPS, 10 to 30 g/L glucose or other carbon sources including but not limited to fructose, maltose, sucrose, glycerol and maltotriose (when specified in the examples), and 1 ml/L trace element mixture. According to experiments, lactose and/or sialic acid can be added as precursors.
TY培養基由1.6%胰蛋白腖(Difco, Erembodegem, Belgium)、1%酵母菌萃取物(Difco)和0.5% 氯化鈉(VWR. Leuven, Belgium)組成。TY瓊脂(TYA)盤由添加12 g/L瓊脂(Difco, Erembodegem, Belgium)的TY培養基組成。TY medium consisted of 1.6% trypsin (Difco, Erembodegem, Belgium), 1% yeast extract (Difco) and 0.5% sodium chloride (VWR. Leuven, Belgium). TY agar (TYA) plates consist of TY medium supplemented with 12 g/L agar (Difco, Erembodegem, Belgium).
例如TY的複合培養基藉由高壓滅菌(121°C,21')且基本培養基藉由過濾(0.22 µm Sartorius)進行滅菌。當必要時,藉由添加抗生素(例如,康黴素、胺苄青黴素)使培養基具有選擇性。Complex media such as TY are sterilized by autoclaving (121°C, 21') and minimal media by filtration (0.22 µm Sartorius). When necessary, media were made selective by the addition of antibiotics (eg, kanamycin, ampicillin).
菌株及突變Strains and Mutations
麩胺酸棒狀桿菌ATCC 13032獲得自American Type Culture Collection。Corynebacterium glutamicum ATCC 13032 was obtained from the American Type Culture Collection.
構建基於由Suzuki等人(Appl. Microbiol. Biotechnol., 2005 Apr, 67(2):225-33)所述的Cre/loxP技術的整合質粒載體和由Okibe等人(Journal of Microbiological Methods 85, 2011, 155-163)所述的溫度敏感的穿梭載體以用於基因缺失、突變和插入。(異源)基因表現的合適啟動子可來自Yim等人(Biotechnol. Bioeng., 2013 Nov, 110(11):2959-69)。可使用Gibson組件、Golden Gate組件、Cliva組件、LCR或限制性連接進行選殖。Construction of integrating plasmid vectors based on the Cre/loxP technology described by Suzuki et al. (Appl. Microbiol. Biotechnol., 2005 Apr, 67(2):225-33) and by Okibe et al. (Journal of Microbiological Methods 85, 2011 , 155-163) described temperature-sensitive shuttle vectors for gene deletion, mutation and insertion. Suitable promoters for (heterologous) gene expression can be obtained from Yim et al. (Biotechnol. Bioeng., 2013 Nov, 110(11):2959-69). Colonization can be performed using Gibson assemblies, Golden Gate assemblies, Cliva assemblies, LCR or restriction ligation.
在產生LNB的實施例中,麩胺酸棒狀桿菌以持續型表現單元的基因組敲入進行修飾,該持續型表現單元包括來自大腸桿菌的glmS*54(與具有UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006)))、來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)、選自以下列舉的一磷酸酶,該列舉包括:包含aphA、Cof、HisB、OtsB、SurE、Yaed、YcjU、YedP、YfbT、YidA、YigB、YihX、YniC、YqaB、YrbL、AppA、Gph、SerB、YbhA、YbiV、YbjL、Yfb、YieH、YjgL、YjjG、YrfG及YbiU的大腸桿菌基因中任一或多個、或來自惡臭假單胞菌的PsMupP、來自啤酒酵母菌的ScDOG1或來自枯草芽孢桿菌的BsAraL,如WO18122225所述、以及選自包括SEQ ID NO:03、04、05、06、07、08、10、11、12或13之列舉的N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶。In the LNB-producing example, C. glutamicum was modified with genomic knock-in of persistent expression units including glmS*54 from E. coli (with wild-type E. coli with UniProt ID P17169 glmS differs by having the A39T, R250C and G472S mutations as described by Deng et al. (Biochimie 88, 419-29 (2006)), the N-acetylglucosamine-6-phosphotransferase GNA1 from Saccharomyces cerevisiae (UniProt ID P43577), a monophosphatase selected from the following list including: comprising aphA, Cof, HisB, OtsB, SurE, Yaed, YcjU, YedP, YfbT, YidA, YigB, YihX, YniC, YqaB, YrbL, Any one or more of the E. coli genes of AppA, Gph, SerB, YbhA, YbiV, YbjL, Yfb, YieH, YjgL, YjjG, YrfG and YbiU, or PsMupP from Pseudomonas putida, ScDOG1 from Saccharomyces cerevisiae or BsAraL from Bacillus subtilis, as described in WO18122225, and selected from N-acetylglucosamine beta from the enumeration comprising SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12 or 13 -1,3-Galactosyltransferase.
在產生LacNAc的實施例中,麩胺酸棒狀桿菌菌株以持續型表現單元的基因組敲入進行修飾,該持續型表現單元包括來自大腸桿菌的glmS*54(與具有UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006)))、來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)、選自以下列舉的一磷酸酶,該列舉包括:包含aphA、Cof、HisB、OtsB、SurE、Yaed、YcjU、YedP、YfbT、YidA、YigB、YihX、YniC、YqaB、YrbL、AppA、Gph、SerB、YbhA、YbiV、YbjL、Yfb、YieH、YjgL、YjjG、YrfG及YbiU的大腸桿菌基因中任一或多個、或來自惡臭假單胞菌的PsMupP、來自啤酒酵母菌的ScDOG1或來自枯草芽孢桿菌的BsAraL,如WO18122225所述、以及選自包括SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41之列舉的N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶。為了進一步使該LNB或LacNAc岩藻糖基化,LNB或LacNAc產生菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)之α-1,2-岩藻糖基轉移酶及/或來自幽門螺旋桿菌的HpFucT(UniProt ID O30511)之α-1,3-岩藻糖基轉移酶。In the LacNAc-producing example, C. glutamicum strains were modified with genomic knock-in of persistent expression units including glmS*54 from E. coli (with wild-type large intestine with UniProt ID P17169) Bacillus glmS differs by having the A39T, R250C and G472S mutations as described by Deng et al. (Biochimie 88, 419-29 (2006)), N-acetylglucosamine-6-phosphotransferase from Saccharomyces cerevisiae GNA1 (UniProt ID P43577), a monophosphatase selected from the list comprising aphA, Cof, HisB, OtsB, SurE, Yaed, YcjU, YedP, YfbT, YidA, YigB, YihX, YniC, YqaB, YrbL , any or more of the E. coli genes of AppA, Gph, SerB, YbhA, YbiV, YbjL, Yfb, YieH, YjgL, YjjG, YrfG and YbiU, or PsMupP from Pseudomonas putida, Saccharomyces cerevisiae ScDOG1 or BsAraL from Bacillus subtilis as described in WO18122225 and selected from the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 31, 32, The N-acetylglucosamine beta-1,4-galactosyltransferases enumerated in 33, 34, 35, 36, 39, 40 and 41. In order to further fucosylate the LNB or LacNAc, the LNB or LacNAc producing strain is further modified with a persistent transcription unit directed against, for example, alpha of HpFutC (GenBank No. AAD29863.1) from Helicobacter pylori -1,2-fucosyltransferase and/or α-1,3-fucosyltransferase from HpFucT (UniProt ID O30511) from Helicobacter pylori.
在產生乳糖類的寡醣的實施例中,創建突變麩胺酸棒狀桿菌菌株以含有編碼乳糖輸入蛋白的基因(例如,UniProt ID P02920的大腸桿菌LacY)。對於2'FL、3FL和diFL產生,例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)之α-1,2-岩藻糖基轉移酶及/或來自幽門螺旋桿菌的HpFucT(UniProt ID O30511)之α-1,3-岩藻糖基轉移酶額外添加到菌株中。In an example of the production of lactose-like oligosaccharides, a mutant Corynebacterium glutamicum strain was created to contain a gene encoding a lactose import protein (eg, E. coli LacY of UniProt ID P02920). For 2'FL, 3FL and diFL production, e.g. α-1,2-fucosyltransferase from HpFutC (GenBank No. AAD29863.1) from Helicobacter pylori and/or HpFucT from Helicobacter pylori (UniProt ID O30511) α-1,3-fucosyltransferase was additionally added to the strain.
在產生乳-N-三糖(LNT-II、LN3、GlcNAc-b1,3-Gal-b1,4-Glc)的實施例中,麩胺酸棒狀桿菌菌株以持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元包含乳糖輸入蛋白(例如,UniProt ID P02920的大腸桿菌LacY)和半乳糖苷β-1,3-N-乙醯基葡糖胺轉移酶,例如來自腦膜炎雙球菌的LgtA(GenBank: AAM33849.1)。為了LNT產生,LN3產生菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對選自包括SEQ ID NO:03、04、05、06、07、08、10、11、12或13的列舉之N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶,其可經由基因敲入或自表現質體呈遞給菌株。為了LNnT產生,LN3產生菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對選自包括SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41的列舉之N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶。為了進一步使LN3、LNT或LNnT岩藻糖基化,突變菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)之α-1,2-岩藻糖基轉移酶及/或來自幽門螺旋桿菌的HpFucT(UniProt ID O30511)之α-1,3-岩藻糖基轉移酶。In the examples of the production of lacto-N-trisaccharides (LNT-II, LN3, GlcNAc-b1,3-Gal-b1,4-Glc), the Corynebacterium glutamicum strain was knocked-in with a persistent transcription unit Modified to include a lactose importin (eg, E. coli LacY from UniProt ID P02920) and a galactoside β-1,3-N-acetylglucosaminyltransferase such as from Neisseria meningitidis LgtA (GenBank: AAM33849.1). For LNT production, the LN3 producing strain was further modified with a persistent transcription unit for a persistent transcription unit selected from the list comprising SEQ ID NO: 03, 04, 05, 06, 07, 08, 10, 11, 12 or 13 N-acetylglucosamine beta-1,3-galactosyltransferase, which can be presented to strains via gene knock-in or self-expressing plastids. For LNnT production, the LN3-producing strain was further modified with a persistent transcription unit directed against the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27 , 28, 31, 32, 33, 34, 35, 36, 39, 40 and 41 of the enumerated N-acetylglucosamine beta-1,4-galactosyltransferases. To further fucosylate LN3, LNT or LNnT, the mutant strain was further modified with a persistent transcription unit directed to, for example, α-1 of HpFutC (GenBank No. AAD29863.1) from H. pylori ,2-fucosyltransferase and/or α-1,3-fucosyltransferase from HpFucT (UniProt ID O30511) from Helicobacter pylori.
在唾液酸產生的實施例中,突變麩胺酸棒狀桿菌菌株藉由過度表現天然的果糖-6-P-轉胺酶(UniProt ID Q8NND3)創建,以促進細胞內葡萄糖胺-6-磷酸鹽庫。此外,麩胺酸棒狀桿菌基因ldh、cgl2645、nagB、gamA及nagA的酶活性藉由基因剃除而破壞且來自啤酒酵母菌的葡萄糖胺-6-P-轉胺酶GNA1(UniProt ID P43577)、來自卵形擬桿菌的N-乙醯葡萄糖胺-2-表異構酶(UniProt ID A7LVG6)和來自空腸曲桿菌的N-乙醯神經胺酸合成酶(UniProt ID Q93MP9)在基因組上過度表現。為了允許唾液酸化寡醣的產生,唾液酸產生菌株進一步以表現建構體進行修飾,該表現建構體包括N-醯基神經胺酸胞苷醯轉移酶,例如來自空腸曲桿菌的NeuA酶(UniProt ID Q93MP7)、來自流行性感冒嗜血桿菌( H. influenzae)的NeuA酶(GenBank No. AGV11798.1)或來自出血性巴氏桿菌的NeuA酶(GenBank No. AMK07891.1)、以及一或多個複製的β-半乳糖苷α-2,3-唾液酸轉移酶,例如來自出血性巴氏桿菌的PmultST3(UniProt ID Q9CLP3)或由具有β-半乳糖苷α-2,3-唾液酸轉移酶活性的UniProt ID Q9CLP3的胺基酸殘基1至268所組成的PmultST3樣多肽及、來自腦膜炎雙球菌的NmeniST3(GenBank No. ARC07984.1)或來自出血性巴氏桿菌出血性亞種菌株Pm70的PmultST2(GenBank No. AAK02592.1)、β-半乳糖苷α-2,6-唾液酸轉移酶,例如來自海鱺發光桿菌的PdST6(UniProt ID O66375)或由具有β-半乳糖苷α-2,6-唾液酸轉移酶活性的UniProt ID O66375的胺基酸殘基108至497所組成的PdST6樣多肽或來自發光桿菌屬JT-ISH-224的P-JT-ISH-224-ST6(UniProt ID A8QYL1)或由具有β-半乳糖苷α-2,6-唾液酸轉移酶活性的UniProt ID A8QYL1的胺基酸殘基18至514所組成的P-JT-ISH-224-ST6樣多肽及/或例如來自小鼠(UniProt ID Q64689)的α-2,8-唾液酸轉移酶。在產生乳糖類唾液酸化寡醣的實施例中,麩胺酸棒狀桿菌突變菌株進一步以持續型轉錄單元進行修飾,該持續型轉錄單元針對乳糖輸入蛋白(例如,UniProt ID P02920的大腸桿菌LacY)。 In an example of sialic acid production, a mutant Corynebacterium glutamicum strain was created by overexpressing the native fructose-6-P-transaminase (UniProt ID Q8NND3) to promote intracellular glucosamine-6-phosphate library. In addition, the enzymatic activities of the Corynebacterium glutamicum genes ldh, cgl2645, nagB, gamA and nagA were disrupted by gene shaving and the glucosamine-6-P-transaminase GNA1 from Saccharomyces cerevisiae (UniProt ID P43577) , N-acetylglucosamine-2-epimerase from Bacteroides ovale (UniProt ID A7LVG6) and N-acetylneuraminic acid synthase from Aspergillus jejuni (UniProt ID Q93MP9) are genomically overrepresented . To allow the production of sialylated oligosaccharides, the sialic acid producing strains are further modified with expression constructs including an N-acylneuraminic acid cytidine transferase, such as the NeuA enzyme from Aspergillus jejuni (UniProt ID Q93MP7), the NeuA enzyme from H. influenzae (GenBank No. AGV11798.1) or the NeuA enzyme from Pasteurella haemorrhagic (GenBank No. AMK07891.1), and one or more Replicated β-galactoside α-2,3-sialyltransferase, such as PmultST3 (UniProt ID Q9CLP3) from Pasteurella haemorrhage or by a β-galactoside α-2,3-sialyltransferase PmultST3-like polypeptide consisting of amino acid residues 1 to 268 of active UniProt ID Q9CLP3 and NmeniST3 from Neisseria meningitidis (GenBank No. ARC07984.1) or from Pasteurella hemorrhagic subsp. hemorrhagic strain Pm70 PmultST2 (GenBank No. AAK02592.1), β-galactoside α-2,6-sialyltransferase, such as PdST6 (UniProt ID O66375) from Photobacterium A PdST6-like polypeptide consisting of amino acid residues 108 to 497 of UniProt ID O66375 with 2,6-sialyltransferase activity or P-JT-ISH-224-ST6 (UniProt ID A8QYL1) or a P-JT-ISH-224-ST6-like polypeptide consisting of amino acid residues 18 to 514 of UniProt ID A8QYL1 with β-galactoside α-2,6-sialyltransferase activity and /or eg alpha-2,8-sialyltransferase from mouse (UniProt ID Q64689). In an example of the production of lactose-sialylated oligosaccharides, the C. glutamicum mutant strain is further modified with a persistent transcription unit directed against a lactose importin (eg, E. coli LacY of UniProt ID P02920) .
為了在蔗糖上生長,突變菌株可額外以持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元包括來自大腸桿菌W的蔗糖轉運體(CscB)(UniProt ID E0IXR1)、來自運動醱酵單胞菌的果糖激酶(Frk)(UniProt ID Q03417)及來自青春雙歧桿菌的蔗糖磷酸化酶(BaSP)(UniProt ID A0ZZH6)。For growth on sucrose, mutant strains can be additionally modified with gene knock-in of persistent transcription units including the sucrose transporter (CscB) (UniProt ID E0IXR1) from E. Fructokinase (Frk) from Bifidobacterium spp. (UniProt ID Q03417) and sucrose phosphorylase (BaSP) from Bifidobacterium adolescentis (UniProt ID A0ZZH6).
異源及同源表現Heterologous and Homologous Expression
需要表現的基因,無論是來自質體還是來自基因組,都是由以下公司之一以合成方法合成:DNA2.0、Gen9、Twist Biosciences或IDT。The genes to be expressed, whether from the plastid or the genome, are synthesized synthetically by one of the following companies: DNA2.0, Gen9, Twist Biosciences or IDT.
藉由針對表現宿主的密碼子使用優化密碼子的使用,可以進一步促進表現。利用供應商的工具對基因進行優化。Expression can be further facilitated by optimizing codon usage for the codon usage of the expression host. Genes were optimized using vendor tools.
培養條件Culture conditions
從冷凍小瓶或TY盤的單一菌落開始96孔微量滴定盤實驗的預培養,在150μL TY中並於37℃在800rpm的軌道振盪器上培養過夜。將此培養物用作96孔方形微量滴定盤的接種物,用400μL MMsf培養基稀釋400倍。每個菌株在96孔盤的多個孔中以生物學重複進行生長。然後將這些最終的96孔培養盤於37℃在800rpm的軌道振盪器上培養72h或更短或更長時間。在培養實驗結束時,從每個孔中取出樣品以測量上清液濃度(細胞離心(spinning down)5分鐘後的細胞外糖濃度),或者藉由在離心細胞之前將培養肉湯在60°C下煮沸15分鐘(=如本文所定義的全肉湯濃度、細胞內及細胞外糖濃度)。Pre-cultures for 96-well microtiter plate experiments were initiated from a single colony in a frozen vial or TY plate, in 150 μL of TY and incubated overnight at 37°C on an orbital shaker at 800 rpm. This culture was used as an inoculum in a 96-well square microtiter plate, diluted 400-fold with 400 μL of MMsf medium. Each strain was grown in biological replicates in multiple wells of a 96-well plate. These final 96-well plates were then incubated at 37°C on an orbital shaker at 800 rpm for 72 h or less or longer. At the end of the culture experiment, samples were taken from each well to measure the supernatant concentration (extracellular sugar concentration after 5 min of spinning down cells), or by heating the culture broth at 60°C before centrifuging the cells Boil for 15 minutes at C (= whole broth concentration, intracellular and extracellular sugar concentration as defined herein).
再者,稀釋培養物以測量600 nm的光密度。細胞性能指數或CPI是藉由將整個肉湯中測量的寡糖濃度除以生質而確定,與參考菌株相比的相對百分比。生質根據經驗確定為在600 nm處測量的光密度的約1/3。Again, the cultures were diluted to measure the optical density at 600 nm. The Cell Performance Index or CPI is determined by dividing the measured oligosaccharide concentration in the whole broth by the biomass, as a relative percentage compared to a reference strain. Biomass was empirically determined to be about 1/3 the optical density measured at 600 nm.
實施例Example 3838 :以修飾的麩胺酸棒狀桿菌菌株產生: Produced with a modified strain of Corynebacterium glutamicum 2’FLNB2’FLNB
麩胺酸棒狀桿菌菌株首先藉由ldh、cgl2645及nagB基因的基因剃除以及持續型轉錄單元的基因敲入進行修飾以用於產生LNB及在蔗糖上生長,該持續型轉錄單元包括編碼來自大腸桿菌的glmS*54(與具有UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006)))、來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)、來自枯草芽孢桿菌的磷酸酶AraL(UniProt ID P94526)、選自包括SEQ ID NO:03、04、05、06、07、08、10、11、12及13之列舉的N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶、來自大腸桿菌W的蔗糖轉運體(CscB)(UniProt ID E0IXR1)、來自運動醱酵單胞菌的果糖激酶(Frk)(UniProt ID Q03417)及來自青春雙歧桿菌的蔗糖磷酸化酶(BaSP)(UniProt ID A0ZZH6)的基因。在下一步驟中,LNB產生菌株以包括針對例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)的α-1,2-岩藻糖基轉移酶之持續型轉錄單元的表現質體進行轉形。根據實施例37提供的培養條件,在缺乏前驅物的MMsf培養基的生長實驗中評估新穎菌株的2’FLNB產生。培養72小時後,收集培養肉湯,並在UPLC分析糖類。Corynebacterium glutamicum strains were first modified for LNB production and growth on sucrose by gene shaving of the ldh, cgl2645 and nagB genes, and knock-in of a persistent transcription unit comprising codes from glmS*54 of E. coli (different from wild-type E. coli glmS with UniProt ID P17169 with A39T, R250C and G472S mutations as described by Deng et al. (Biochimie 88, 419-29 (2006))), from Saccharomyces cerevisiae N-acetylglucosamine-6-phosphotransferase GNA1 (UniProt ID P43577), phosphatase AraL (UniProt ID P94526) from Bacillus subtilis, selected from the group consisting of SEQ ID NOs: 03, 04, 05, N-acetylglucosamine beta-1,3-galactosyltransferase enumerated in 06, 07, 08, 10, 11, 12 and 13, sucrose transporter (CscB) from Escherichia coli W (UniProt ID E0IXR1) , fructokinase (Frk) from Zymomonas mobilis (UniProt ID Q03417) and genes for sucrose phosphorylase (BaSP) from Bifidobacterium adolescentis (UniProt ID A0ZZH6). In the next step, the LNB-producing strain is transfected with an expressing plastid comprising a persistent transcription unit for, for example, α-1,2-fucosyltransferase from HpFutC (GenBank No. AAD29863.1) from H. pylori shape. According to the culture conditions provided in Example 37, the novel strains were evaluated for 2' FLNB production in growth experiments in MMsf medium lacking the precursor. After 72 hours of incubation, the culture broth was collected and analyzed for carbohydrates by UPLC.
實施例Example 3939 :以修飾的麩胺酸棒狀桿菌菌株產生包括唾液酸化: Produced by a modified strain of Corynebacterium glutamicum including sialylation LacNAcLacNAc 的混合物mixture
麩胺酸棒狀桿菌首先以ldh、cgl2645、nagB、nagA及gamA基因的基因剃除以及持續型轉錄單元的基因敲入進行修飾以用於產生LacNAc及在蔗糖上生長,該持續型轉錄單元包括編碼天然的果糖-6-P-轉胺酶(UniProt ID Q8NND3)、來自大腸桿菌的突變glmS*54(與具有UniProt ID P17169的野生型大腸桿菌glmS不同之處在於具有A39T、R250C和G472S突變,如Deng等人所述(Biochimie 88, 419-29 (2006)))、來自啤酒酵母菌的N-乙醯葡萄糖胺-6-磷酸轉移酶GNA1(UniProt ID P43577)、來自枯草芽孢桿菌的磷酸酶AraL(UniProt ID P94526)、選自包括SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41之列舉的N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶、來自大腸桿菌W的蔗糖轉運體(CscB)(UniProt ID E0IXR1)、來自運動醱酵單胞菌的果糖激酶(Frk)(UniProt ID Q03417)及來自青春雙歧桿菌的蔗糖磷酸化酶(BaSP)(UniProt ID A0ZZH6)的基因。在唾液酸合成的下一步驟中,突變菌株進一步以持續型轉錄單元的基因敲入進行修飾,該持續型轉錄單元包括編碼來自卵形擬桿菌的N-乙醯葡萄糖胺-2-表異構酶(UniProt ID A7LVG6)以及來自空腸曲桿菌的N-乙醯神經胺酸合成酶(UniProt ID Q93MP9)之基因。在下一步驟中,新穎菌株以包括持續型轉錄單元的表現質體進行轉形,該持續型轉錄單元包括編碼來自空腸曲桿菌的NeuA酶(UniProt ID Q93MP7)之基因且與編碼來自出血性巴氏桿菌之β-半乳糖苷α-2,3-唾液酸轉移酶PmultST3(UniProt ID Q9CLP3)或來自海鱺發光桿菌的β-半乳糖苷 α-2,6-唾液酸轉移酶PdST6(UniProt ID O66375)之基因組合。Corynebacterium glutamicum was first modified with gene shaving of the ldh, cgl2645, nagB, nagA, and gamA genes and knock-in of a persistent transcription unit for the production of LacNAc and growth on sucrose, including Encoding native fructose-6-P-transaminase (UniProt ID Q8NND3), mutant glmS*54 from E. coli (different from wild-type E. coli glmS with UniProt ID P17169 with A39T, R250C and G472S mutations, (Biochimie 88, 419-29 (2006)), N-acetylglucosamine-6-phosphotransferase GNA1 from Saccharomyces cerevisiae (UniProt ID P43577), phosphatase from Bacillus subtilis as described by Deng et al. (Biochimie 88, 419-29 (2006)) AraL (UniProt ID P94526), selected from the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, 27, 28, 31, 32, 33, 34, 35, 36, N-acetylglucosamine beta-1,4-galactosyltransferase enumerated in 39, 40 and 41, sucrose transporter (CscB) from Escherichia coli W (UniProt ID E0IXR1), from Zymomonas mobilis The fructokinase (Frk) (UniProt ID Q03417) and sucrose phosphorylase (BaSP) (UniProt ID A0ZZH6) genes from Bifidobacterium adolescentis. In the next step of sialic acid synthesis, the mutant strain was further modified with gene knock-in of a persistent transcription unit including the encoding for N-acetylglucosamine-2-epiisomer from Bacteroides ovale Enzyme (UniProt ID A7LVG6) and genes for N-acetylneuraminic acid synthase (UniProt ID Q93MP9) from Aspergillus jejuni. In the next step, the novel strain is transformed with an expression plastid comprising a persistent transcription unit comprising the gene encoding the NeuA enzyme (UniProt ID Q93MP7) from A. Bacillus β-galactoside α-2,3-sialyltransferase PmultST3 (UniProt ID Q9CLP3) or β-galactoside α-2,6-sialyltransferase PdST6 (UniProt ID O66375) ) gene combination.
根據實施例37提供的培養條件,在缺乏前驅物的MMsf培養基的生長實驗中評估新穎菌株的LacNAc、唾液酸及唾液酸化LacNAc的產生。當將乳糖作為前驅物添加到MMsf培養基中時,依據α-唾液酸轉移酶的表現,亦評估突變菌株是否額外產生3'-SL或6'-SL。培養72小時後,收集培養肉湯,並在UPLC分析糖類。The novel strains were evaluated for LacNAc, sialic acid and sialylated LacNAc production in growth experiments in MMsf medium lacking precursors according to the culture conditions provided in Example 37. It was also assessed whether the mutant strain additionally produced 3'-SL or 6'-SL depending on the expression of α-sialyltransferase when lactose was added as a precursor to the MMsf medium. After 72 hours of incubation, the culture broth was collected and analyzed for carbohydrates by UPLC.
實施例Example 4040 :材料及方法萊茵衣藻(: Materials and Methods Chlamydomonas reinhardtii ( Chlamydomonas reinhardtiiChlamydomonas reinhardtii ))
培養基culture medium
萊茵衣藻細胞在Tris-乙酸-磷酸鹽(Tris-acetate-phosphate,TAP)培養基(pH 7.0)中培養。TAP培養基使用1000倍的Hutner微量元素混合物。Hutner微量元素混合物由50 g/L Na2EDTA.H2O(Titriplex III)、22 g/L ZnSO4.7H2O、11.4 g/L H3BO3、5 g/L MnCl2.4H2O、5 g/L FeSO4.7H2O、1.6 g/L CoCl2.6H2O、1.6 g/L CuSO4.5H2O及1.1 g/L (NH4)6MoO3所組成。Chlamydomonas reinhardtii cells were cultured in Tris-acetate-phosphate (TAP) medium (pH 7.0). TAP medium uses a 1000x Hutner trace element mix. The Hutner trace element mixture consists of 50 g/L Na2EDTA.H2O (Titriplex III), 22 g/L ZnSO4.7H2O, 11.4 g/L H3BO3, 5 g/L MnCl2.4H2O, 5 g/L FeSO4.7H2O, 1.6 g/L It is composed of L CoCl2.6H2O, 1.6 g/L CuSO4.5H2O and 1.1 g/L (NH4)6MoO3.
1.6 g/L CuSO4.5H2O含有2.42 g/L Tris(参(羥甲基)胺基甲烷(tris(hydroxymethyl)aminomethane))、25 mg/L鹽儲備溶液、0.108 g/L K2HPO4、0.054 g/L KH2PO4及1.0 mL/L冰醋酸。鹽儲備溶液由15 g/L NH4CL、4 g/L MgSO4.7H2O及2 g/L CaCl2.2H2O所組成。作為醣類合成的前驅物,可添加例如半乳糖、葡萄糖、果糖及/或岩藻糖的前驅物。培養基藉由高壓滅菌(121°C,21')滅菌。對於在瓊脂斜面上的原種培養,使用含有1%瓊脂(純化的高強度,1000 g/cm2)的TAP培養基。1.6 g/L CuSO4.5H2O contains 2.42 g/L Tris (tris(hydroxymethyl)aminomethane), 25 mg/L salt stock solution, 0.108 g/L K2HPO4, 0.054 g/L KH2PO4 and 1.0 mL/L glacial acetic acid. The salt stock solution consisted of 15 g/L NH4CL, 4 g/L MgSO4.7H2O, and 2 g/L CaCl2.2H2O. As precursors for saccharide synthesis, precursors such as galactose, glucose, fructose and/or fucose can be added. The medium was sterilized by autoclaving (121°C, 21'). For stock cultures on agar slants, use TAP medium containing 1% agar (purified high strength, 1000 g/cm2).
菌株、質體及突變Strains, plastids and mutations
萊茵衣藻野生型菌株21gr(CC-1690,野生型,mt+)、6145C(CC-1691,野生型,mt−)、CC-125(137c,野生型,mt+)、CC-124(137c,野生型,mt−)獲得自Chlamydomonas Resource Center(https://www.chlamycollection.org),University of Minnesota,U.S.A。Chlamydomonas reinhardtii wild type strains 21gr (CC-1690, wild type, mt+), 6145C (CC-1691, wild type, mt−), CC-125 (137c, wild type, mt+), CC-124 (137c, wild type, mt+) type, mt−) was obtained from Chlamydomonas Resource Center (https://www.chlamycollection.org), University of Minnesota, U.S.A.
源自pSI103的表現質體或得自Chlamydomonas Resource Center。可使用Gibson組件、Golden Gate組件、Cliva組件、LCR或限制性連接進行選殖。(異源)基因表現的合適啟動子可來自例如Scranton等人(Algal Res. 2016, 15: 135-142)。目標基因的修飾(例如,基因剔除或基因替代)可使用由Jiang等人(Eukaryotic Cell 2014, 13(11): 1465-1469)所述的Crispr-Cas技術執行。Expression plasmids derived from pSI103 or from the Chlamydomonas Resource Center. Colonization can be performed using Gibson assemblies, Golden Gate assemblies, Cliva assemblies, LCR or restriction ligation. Suitable promoters for (heterologous) gene expression can be obtained, for example, from Scranton et al. (Algal Res. 2016, 15: 135-142). Modification of the target gene (eg, gene knockout or gene replacement) can be performed using the Crispr-Cas technology described by Jiang et al. (Eukaryotic Cell 2014, 13(11): 1465-1469).
可如Wang等人(Biosci. Rep. 2019, 39: BSR2018210)所述經由電穿孔執行轉形。細胞在在液體 TAP 培養基中在恆定通氣和連續光照下生長,光強度為8000 Lx,直到細胞密度達到1.0至2.0 × 10 7cells/mL。接著,將細胞以1.0 × 10 6cells/mL的濃度接種到新鮮的液體TAP培養基中,並在連續光照下生長18-20小時,直至細胞密度達到4.0 × 10 6cells/mL。然後,藉由在室溫下以1250 g離心5分鐘收集細胞,以含有60 mM山梨醇(Sigma,U.S.A.)的預冷液體TAP培養基洗滌並再懸浮,並冰凍10分鐘。接著,將250 µL細胞懸浮液(對應於5.0 × 10 7cells)與含有100 ng質體DNA(400 ng/mL)放入預冷的0.4 cm電穿孔比色管中。使用BTX ECM830電穿孔設備(1575Ω,50μFD)以6個500V脈衝進行電穿孔,每個脈衝具有4ms的脈衝長度和100ms的脈衝間隔時間。電穿孔後,立即將比色管置於冰上10分鐘。最後,將細胞懸浮液轉移到含有10 mL新鮮液體TAP培養基和60 mM山梨醇的50 mL錐形離心管中,在昏暗的光線下緩慢搖動過夜恢復。在過夜恢復後,重新收集細胞並用澱粉包埋(starch embedding)法將細胞接種到含有胺苄青黴素(100 mg/L)或氯黴素(100 mg/L)的選擇性1.5%(w/v)瓊脂-TAP盤上。然後將盤在23+-0.5°C下,以8000 Lx的光強度連續照明下進行培養。5-7天後分析細胞。 Transformation can be performed via electroporation as described by Wang et al. (Biosci. Rep. 2019, 39: BSR2018210). Cells were grown in liquid TAP medium under constant aeration and continuous light at a light intensity of 8000 Lx until cell density reached 1.0 to 2.0 x 10 7 cells/mL. Next, cells were seeded into fresh liquid TAP medium at a concentration of 1.0 x 10 6 cells/mL and grown under continuous light for 18-20 hours until the cell density reached 4.0 x 10 6 cells/mL. Cells were then harvested by centrifugation at 1250 g for 5 min at room temperature, washed and resuspended in pre-chilled liquid TAP medium containing 60 mM sorbitol (Sigma, USA), and frozen for 10 min. Next, place 250 µL of the cell suspension (corresponding to 5.0 × 10 7 cells) with 100 ng of plastid DNA (400 ng/mL) into a pre-cooled 0.4 cm electroporation colorimetric tube. Electroporation was performed using a BTX ECM830 electroporation device (1575 Ω, 50 μFD) with 6 pulses of 500 V, each with a pulse length of 4 ms and a pulse interval of 100 ms. Immediately after electroporation, place the cuvette on ice for 10 minutes. Finally, transfer the cell suspension to a 50 mL conical centrifuge tube containing 10 mL of fresh liquid TAP medium and 60 mM sorbitol and recover with slow shaking overnight in dim light. After overnight recovery, cells were re-harvested and seeded by starch embedding into selective 1.5% (w/v) containing ampicillin (100 mg/L) or chloramphenicol (100 mg/L). ) on agar-TAP dishes. Plates were then incubated at 23+-0.5°C under continuous illumination with a light intensity of 8000 Lx. Cells were analyzed after 5-7 days.
在用於產生UDP-半乳糖的實施例中,萊茵衣藻細胞以轉錄單元進行修飾,該轉錄單元包括編碼來自阿拉伯芥( Arabidopsis thaliana)的半乳糖激酶(KIN, UniProt ID Q9SEE5)之基因、及編碼來自阿拉伯芥的UDP-糖焦磷酸化酶(USP)(UniProt ID Q9C5I1)之基因。 In an example for the production of UDP-galactose, the Chlamydomonas reinhardtii cells are modified with a transcription unit comprising a gene encoding a galactokinase (KIN, UniProt ID Q9SEE5) from Arabidopsis thaliana , and Gene encoding UDP-sugar pyrophosphorylase (USP) (UniProt ID Q9C5I1) from Arabidopsis.
在產生LNB的實施例中,修飾以產生UDP-半乳糖的萊茵衣藻細胞以表現質體進行修飾,該表現質體包括選自包括SEQ ID NO:03、04、05、06、07、08、10、11、12及13之列舉的N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶的轉錄單元。另外,突變萊茵衣藻細胞可以表現質體進行修飾,該表現質體包括例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)之α-1,2-岩藻糖基轉移酶及/或來自幽門螺旋桿菌的HpFucT(UniProt ID O30511)之α-1,3-岩藻糖基轉移酶之轉錄單元。In an embodiment of producing LNB, the C. reinhardtii cell modified to produce UDP-galactose is modified with a presentation plastid comprising a plastid selected from the group consisting of SEQ ID NOs: 03, 04, 05, 06, 07, 08 , 10, 11, 12 and 13 of the transcription unit of N-acetylglucosamine beta-1,3-galactosyltransferase. In addition, mutant C. reinhardtii cells can be modified by expressing plastids including, for example, α-1,2-fucosyltransferase and/or HpFutC (GenBank No. AAD29863.1) from Helicobacter pylori Transcription unit of α-1,3-fucosyltransferase from HpFucT (UniProt ID O30511) from Helicobacter pylori.
在產生LacNAc的實施例中,修飾以產生UDP-半乳糖的萊茵衣藻細胞進一步以表現質體進行修飾,該表現質體包括選自包括SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41之列舉的N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶的轉錄單元。另外,突變萊茵衣藻細胞可以表現質體進行修飾,該表現質體包括例如來自幽門螺旋桿菌的HpFutC(GenBank No. AAD29863.1)之α-1,2-岩藻糖基轉移酶及/或來自幽門螺旋桿菌的HpFucT(UniProt ID O30511)之α-1,3-岩藻糖基轉移酶之轉錄單元。In the embodiment of producing LacNAc, the Chlamydomonas reinhardtii cell modified to produce UDP-galactose is further modified with a presentation plastid comprising a plastid selected from the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, N-acetylglucosamine beta-1,4-galactosylation enumerated in 20, 21, 22, 23, 26, 27, 28, 31, 32, 33, 34, 35, 36, 39, 40 and 41 The transcription unit of an enzyme. In addition, mutant C. reinhardtii cells can be modified by expressing plastids including, for example, α-1,2-fucosyltransferase and/or HpFutC (GenBank No. AAD29863.1) from Helicobacter pylori Transcription unit of α-1,3-fucosyltransferase from HpFucT (UniProt ID O30511) from Helicobacter pylori.
在CMP-唾液酸合成的實施例中,萊茵衣藻細胞以持續型轉錄單元進行修飾,該持續型轉錄單元針對例如來自智人的GNE(UniProt ID Q9Y223)之UDP-N-乙醯葡萄糖胺-2-表異構酶/N-乙醯甘露糖胺激酶或包括R263L突變的人類GNE多肽的突變形式、例如來自智人的NANS(UniProt ID Q9NR45)之N-醯基神經胺酸-9-磷酸合成酶及例如來自智人的CMAS(UniProt ID Q8NFW8)之N-醯基神經胺酸胞苷醯轉移酶。在產生唾液酸化寡醣的實施例中,萊茵衣藻細胞以例如來自小鼠的CST(UniProt ID Q61420)之CMP唾液酸轉運子、及選自例如智人、小鼠、褐鼠的物種之高基氏體定位的唾液酸轉移酶(Golgi-localised sialyltransferase)進行修飾。In an example of CMP-sialic acid synthesis, Chlamydomonas reinhardtii cells are modified with a persistent transcription unit directed to, for example, UDP-N-acetylglucosamine- 2-Epimerase/N-acetylmannosamine kinase or mutant forms of human GNE polypeptides including the R263L mutation, such as N-acylneuraminic acid-9-phosphate from NANS (UniProt ID Q9NR45) from Homo sapiens Synthetase and eg N-acylneuraminocytidine cytidine transferase from Homo sapiens CMAS (UniProt ID Q8NFW8). In an example of production of sialylated oligosaccharides, C. reinhardtii cells have high levels of CMP sialic acid transporters such as CST from mouse (UniProt ID Q61420), and species selected from, e.g., Homo sapiens, mouse, brown rat Golgi-localised sialyltransferase for modification.
異源及同源表現Heterologous and Homologous Expression
需要表現的基因,無論是來自質體還是來自基因組,都是由以下公司之一以合成方法合成:DNA2.0、Gen9、Twist Biosciences或IDT。The genes to be expressed, whether from the plastid or the genome, are synthesized synthetically by one of the following companies: DNA2.0, Gen9, Twist Biosciences or IDT.
藉由針對表現宿主的密碼子使用優化密碼子的使用,可以進一步促進表現。利用供應商的工具對基因進行優化。Expression can be further facilitated by optimizing codon usage for the codon usage of the expression host. Genes were optimized using vendor tools.
培養條件Culture conditions
萊茵衣藻細胞在23 +/- 0.5°C下,以8000 Lx的光強度的14/10小時光照/黑暗循環下於選擇性TAP瓊脂盤中進行培養。培養5至7天後進行細胞分析。Chlamydomonas reinhardtii cells were cultured in selective TAP agar plates at 23 +/- 0.5°C with a 14/10 hour light/dark cycle at a light intensity of 8000 Lx. Cell analysis was performed after 5 to 7 days in culture.
對於高密度培養,細胞可以在封閉系統,例如如Chen等人(Bioresour. Technol. 2011, 102: 71-81)和Johnson等人(Biotechnol. Prog. 2018, 34: 811-827)所述的垂直或水平管光生物反應器、攪拌槽光生物反應器或平板光生物反應器(Bioresour. Technol. 2011, 102: 71-81)中進行培養。For high-density culture, cells can be grown in a closed system, for example, vertically as described by Chen et al. (Bioresour. Technol. 2011, 102: 71-81) and Johnson et al. Or horizontal tube photobioreactor, stirred tank photobioreactor or flat plate photobioreactor (Bioresour. Technol. 2011, 102: 71-81).
實施例Example 4141 :於修飾的萊茵衣藻細胞中產生: produced in modified Chlamydomonas reinhardtii cells LNBLNB 及and 2’FLNB2’FLNB
如實施例40中所述,以持續型轉錄單元的基因敲入改造萊茵衣藻細胞以產生UDP-Gal,該持續型轉錄單元包括來自阿拉伯芥的半乳糖激酶(KIN, UniProt ID Q9SEE5)及來自阿拉伯芥的UDP-糖焦磷酸化酶(USP)(UniProt ID Q9C5I1)。在下一步驟中,以包括轉錄單元的表現質體將突變細胞進行轉形,該轉錄單元包括選自包括SEQ ID NO:03、04、05、06、07、08、10、11、12及13之列舉的N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶及來自幽門螺旋桿菌的α-1,2-岩藻糖基轉移酶HpFutC(GenBank No. AAD29863.1)。根據實施例40提供的培養條件,在包括半乳糖作為前驅物的TAP瓊脂盤的培養實驗中評估新穎菌株。培養5天後,收穫細胞,並在UPLC分析LNB及2’FLNB的產生。As described in Example 40, C. reinhardtii cells were engineered to produce UDP-Gal with knock-in of a persistent transcription unit including galactokinase (KIN, UniProt ID Q9SEE5) from Arabidopsis and Arabidopsis UDP-sugar pyrophosphorylase (USP) (UniProt ID Q9C5I1). In the next step, the mutant cells are transformed with an expression plasmid comprising a transcription unit comprising a transcription unit selected from the group consisting of SEQ ID NOs: 03, 04, 05, 06, 07, 08, 10, 11, 12 and 13 The exemplified N-acetylglucosamine beta-1,3-galactosyltransferase and the alpha-1,2-fucosyltransferase HpFutC from Helicobacter pylori (GenBank No. AAD29863.1). The novel strains were evaluated in culture experiments on TAP agar plates including galactose as a precursor according to the culture conditions provided in Example 40. After 5 days in culture, cells were harvested and analyzed by UPLC for LNB and 2'FLNB production.
實施例Example 4242 :於修飾的萊茵衣藻細胞中產生: produced in modified Chlamydomonas reinhardtii cells LacNAcLacNAc 及and 3’-3'- 岩藻糖基化Fucosylation LacNAcLacNAc
如實施例40中所述,以持續型轉錄單元的基因敲入改造萊茵衣藻細胞以產生UDP-Gal,該持續型轉錄單元包括來自阿拉伯芥的半乳糖激酶(KIN, UniProt ID Q9SEE5)及來自阿拉伯芥的UDP-糖焦磷酸化酶(USP)(UniProt ID Q9C5I1)。在下一步驟中,以包括轉錄單元的表現質體將突變細胞進行轉形,該轉錄單元包括選自包括SEQ ID NO:15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41之列舉的N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶及例如來自幽門螺旋桿菌的HpFucT(UniProt ID O30511)之α-1,3-岩藻糖基轉移酶。根據實施例40提供的培養條件,在包括半乳糖作為前驅物的TAP瓊脂盤的培養實驗中評估新穎菌株。培養5天後,收穫細胞,並在UPLC分析LacNAc及3’-岩藻糖基化LacNAc的產生。As described in Example 40, C. reinhardtii cells were engineered to produce UDP-Gal with knock-in of a persistent transcription unit including galactokinase (KIN, UniProt ID Q9SEE5) from Arabidopsis and Arabidopsis UDP-sugar pyrophosphorylase (USP) (UniProt ID Q9C5I1). In the next step, the mutant cells are transformed with an expression plasmid comprising a transcription unit comprising a transcription unit selected from the group consisting of SEQ ID NOs: 15, 16, 17, 18, 19, 20, 21, 22, 23, 26 , 27, 28, 31, 32, 33, 34, 35, 36, 39, 40 and 41 enumerated N-acetylglucosamine beta-1,4-galactosyltransferases and, for example, HpFucT from Helicobacter pylori (UniProt ID O30511) α-1,3-fucosyltransferase. The novel strains were evaluated in culture experiments on TAP agar plates including galactose as a precursor according to the culture conditions provided in Example 40. After 5 days in culture, cells were harvested and analyzed by UPLC for LacNAc and 3'-fucosylated LacNAc production.
實施例Example 4343 :材料及方法動物細胞: Materials and Methods Animal Cells
從不同哺乳動物的脂肪組織中分離間質幹細胞Isolation of mesenchymal stem cells from adipose tissue of different mammals
新鮮脂肪組織獲得自屠宰場(例如,牛、豬、羊、雞、鴨、鯰魚、蛇、青蛙)或抽脂(例如,在人類的情況下,在知情同意後)並保存在補充有抗生素的磷酸鹽緩衝鹽水中。對脂肪組織進行酶消化,然後離心以分離間質幹細胞。將分離的間質幹細胞轉移到細胞培養瓶中並在標準生長條件下生長,例如37°C,5%CO2。初始培養基包括DMEM-F12、RPMI及Α-MEM培養基(補充有15%胎牛血清)和1%抗生素。在第一次繼代後,隨後將培養基替換為添加10% FBS(胎牛血清)的培養基。例如,出於所有目的藉由參照整體而併入本文的Ahmad和Shakoori(2013, Stem Cell Regen. Med. 9(2): 29-36)描述此實施例中在此描述的方法的部分變化。Fresh adipose tissue was obtained from slaughterhouses (eg, cattle, pigs, sheep, chickens, ducks, catfish, snakes, frogs) or liposuctioned (eg, in the case of humans, after informed consent) and stored in antibiotic-supplemented in phosphate buffered saline. Adipose tissue is enzymatically digested and then centrifuged to isolate mesenchymal stem cells. Transfer the isolated mesenchymal stem cells to cell culture flasks and grow under standard growth conditions, such as 37°C, 5% CO2. Initial media included DMEM-F12, RPMI and A-MEM media (supplemented with 15% fetal bovine serum) and 1% antibiotics. After the first passage, the medium was subsequently replaced with medium supplemented with 10% FBS (fetal bovine serum). For example, Ahmad and Shakoori (2013, Stem Cell Regen. Med. 9(2): 29-36), which is incorporated herein by reference in its entirety, describe some variations of the methods described herein in this Example.
從乳汁分離間質幹細胞Isolation of mesenchymal stem cells from milk
本實施例說明了從人類或如本文所述的任何其他哺乳動物在無菌條件下收集的乳汁中分離間質幹細胞。將等體積的磷酸鹽緩衝鹽水加入稀釋的乳汁中,然後離心20分鐘。物用磷酸鹽緩衝鹽水洗滌細胞沉澱三次,並且在標準培養條件下,將細胞接種在細胞培養瓶的補充有10%胎牛血清及1%抗生素的DMEM-F12、RPMI及Α-MEM培養基中。例如,出於所有目的藉由參照整體而併入本文的Hassiotou等人(2012, Stem Cells. 30(10): 2164-2174)描述此實施例中在此描述的方法的部分變化。This example illustrates the isolation of mesenchymal stem cells from milk collected under sterile conditions from a human or any other mammal as described herein. An equal volume of phosphate buffered saline was added to the diluted milk, followed by centrifugation for 20 minutes. The cell pellets were washed three times with phosphate buffered saline, and the cells were seeded in cell culture flasks in DMEM-F12, RPMI and A-MEM medium supplemented with 10% fetal bovine serum and 1% antibiotics under standard culture conditions. For example, Hassiotou et al. (2012, Stem Cells. 30(10): 2164-2174), which is incorporated herein by reference in its entirety, describe some variations of the methods described herein in this example.
使用use 2D2D 及and 3D3D 培養系統分化幹細胞culture system differentiated stem cells
分離的間質細胞可以在2D及3D培養系統中分化為乳腺樣上皮細胞和管狀細胞(luminal cells)。例如,參照Huynh et al. 1991. Exp Cell Res. 197(2): 191 -199;Gibson et al.1991, In Vitro Cell Dev Biol Anim. 27(7): 585-594;Blatchford et al. 1999;Animal Cell Technology’: Basic & Applied Aspects, Springer, Dordrecht. 141-145;Williams et al. 2009, Breast Cancer Res 11(3): 26-43;以及Arevalo et al. 2015, Am J Physiol Cell Physiol. 310(5): C348 - C356;其皆出於所有目的藉由參照整體而併入本文。 Isolated mesenchymal cells can be differentiated into mammary-like epithelial cells and luminal cells in 2D and 3D culture systems. For example, see Huynh et al. 1991. Exp Cell Res. 197(2): 191-199; Gibson et al. 1991, In Vitro Cell Dev Biol Anim. 27(7): 585-594; Blatchford et al. 1999; Animal Cell Technology': Basic & Applied Aspects, Springer, Dordrecht. 141-145; Williams et al. 2009, Breast Cancer Res 11(3): 26-43; and Arevalo et al. 2015, Am J Physiol Cell Physiol. 310 (5): C348 - C356; all incorporated herein by reference in their entirety for all purposes.
針對2D培養,最初將分離的細胞接種在補充有10 ng/ml上皮生長因子及5 pg/ml胰島素的生長培養基中的培養盤中。在匯合時,以補充有2%胎牛血清、1%青黴素-鏈黴素(100 U/ml青黴素、100 ug/ml鏈黴素)和5 pg/ml胰島素的生長培養基餵養細胞48小時。為了誘導分化,以含有5 pg/ml胰島素、1 pg/ml氫化可體松、0.65 ng/ml三碘甲狀腺素、100 nM地塞米松及1 pg/ml泌乳素的完全生長培養基餵養細胞。24小時後,從完全誘導培養基中去除血清。For 2D culture, isolated cells were initially seeded in culture dishes in growth medium supplemented with 10 ng/ml epithelial growth factor and 5 pg/ml insulin. At confluence, cells were fed for 48 h with growth medium supplemented with 2% fetal bovine serum, 1% penicillin-streptomycin (100 U/ml penicillin, 100 ug/ml streptomycin), and 5 pg/ml insulin. To induce differentiation, cells were fed with complete growth medium containing 5 pg/ml insulin, 1 pg/ml hydrocortisone, 0.65 ng/ml triiodothyronine, 100 nM dexamethasone, and 1 pg/ml prolactin. After 24 hours, serum was removed from the complete induction medium.
針對3D培養,將分離的細胞以胰蛋白酶消化並在基質膠(Matrigel)、透明質酸或超低附著表面培養盤中培養6天,並藉由添加補充有10 ng/ml上皮生長因子和5 pg/ml胰島素的生長培養基誘導分化和乳酸。在匯合時,以補充有2%胎牛血清、1%青黴素-鏈黴素(100 U/ml青黴素、100 ug/ml鏈黴素)及5 pg/ml胰島素的生長培養基餵養細胞48小時。為了誘導分化,以含有5 pg/ml胰島素、1 pg/ml氫化可體松、0.65 ng/ml三碘甲狀腺素、100 nM地塞米松和1 pg/ml泌乳素的完全生長培養基餵養細胞。24小時後,從完全誘導培養基中除去血清。For 3D culture, isolated cells were trypsinized and cultured in Matrigel, hyaluronic acid, or ultra-low attachment surface culture dishes for 6 days and supplemented with 10 ng/ml epithelial growth factor and 5 Growth medium with pg/ml insulin induces differentiation and lactate. At confluence, cells were fed growth medium supplemented with 2% fetal bovine serum, 1% penicillin-streptomycin (100 U/ml penicillin, 100 ug/ml streptomycin), and 5 pg/ml insulin for 48 hours. To induce differentiation, cells were fed with complete growth medium containing 5 pg/ml insulin, 1 pg/ml hydrocortisone, 0.65 ng/ml triiodothyronine, 100 nM dexamethasone and 1 pg/ml prolactin. After 24 hours, serum was removed from the complete induction medium.
製備乳腺樣細胞的方法Method for preparing mammary gland-like cells
藉由編碼Oct4、Sox2、Klf4及c-Myc的病毒載體的再編程,使哺乳動物細胞具有誘導多能性(pluripotency)。接著,將得到的再編程細胞在Mammocult培養基(可獲得自Stem Cell Technologies)或乳腺細胞富集培養基(DMEM,3% FBS、雌激素、黃體酮、肝素、氫化可體松、胰島素、EGF)中培養,使其類似乳腺,從中可誘導選擇乳成分的表現。或者,使用重塑系統(如CRISPR/Cas9)進行表觀遺傳重塑(epigenetic remodelling),以持續性活化選擇的感興趣基因,如酪蛋白、α-乳清蛋白,以使其允許各自的蛋白質表現,及/或下調及/或剔除選擇的內源基因,如例如WO21067641所述,其出於所有目的藉由參照整體而併入本文。Mammalian cells are rendered pluripotency by reprogramming of viral vectors encoding Oct4, Sox2, Klf4 and c-Myc. Next, the resulting reprogrammed cells were grown in Mammocult medium (available from Stem Cell Technologies) or breast cell enrichment medium (DMEM, 3% FBS, estrogen, progesterone, heparin, hydrocortisone, insulin, EGF) Cultured to resemble mammary glands, from which performance of selected milk components can be induced. Alternatively, epigenetic remodelling using a remodeling system such as CRISPR/Cas9 to persistently activate selected genes of interest such as casein, alpha-lactalbumin to allow their respective proteins Selected endogenous genes are expressed, and/or down-regulated and/or knocked out, as described, for example, in WO21067641, which is hereby incorporated by reference in its entirety for all purposes.
培養nourish
完全生長培養基包括高糖DMEM/F12、10% FBS、1% NEAA、1% pen/strep、1% ITS-X、1% F-Glu、10 ng/ml EGF及5 pg/m氫化可體松。完全泌乳培養基包括高糖DMEM/F12、1% NEAA、1% pen/strep、1% ITS-X、1% F-Glu、10 ng/ml EGF、5 pg/ml氫化可體松及1 pg/ml泌乳素(在Hyunh 1991為5ug/ml)。將細胞以20,000 cells/cm2的密度接種到膠原塗佈的燒瓶上的完全生長培養基,並使其在完全生長培養基中黏附和擴增48小時,之後將培養基切換為完全泌乳培養基。接觸泌乳培養基後,細胞開始分化並停止生長。在約一週內,細胞開始將例如乳脂、乳糖、酪蛋白和乳清等泌乳產物分泌到培養基中。可以藉由超微過濾濃縮或稀釋以獲得所欲濃度的泌乳培養基。泌乳培養基的所欲鹽平衡可以藉由透析完成,例如,從培養基中移除不需要的代謝產物。使用的激素和其他生長因子可藉由樹脂純化選擇性地萃取,例如使用鎳樹脂以移除帶His-標籤的生長因子,以進一步降低乳酸產物中的污染物水平。Complete growth medium including high glucose DMEM/F12, 10% FBS, 1% NEAA, 1% pen/strep, 1% ITS-X, 1% F-Glu, 10 ng/ml EGF, and 5 pg/m hydrocortisone . Complete lactation medium including high glucose DMEM/F12, 1% NEAA, 1% pen/strep, 1% ITS-X, 1% F-Glu, 10 ng/ml EGF, 5 pg/ml hydrocortisone and 1 pg/ml ml prolactin (5ug/ml in Hyunh 1991). Cells were seeded into complete growth medium on collagen-coated flasks at a density of 20,000 cells/cm2 and allowed to adhere and expand in complete growth medium for 48 hours, after which the medium was switched to complete lactation medium. After exposure to lactation medium, cells begin to differentiate and stop growing. Within about a week, cells begin to secrete lactation products such as milk fat, lactose, casein and whey into the medium. The lactation medium can be concentrated or diluted by ultrafiltration to obtain the desired concentration of lactation medium. The desired salt balance of the lactation medium can be accomplished by dialysis, eg, to remove unwanted metabolites from the medium. Hormones and other growth factors used can be selectively extracted by resin purification, such as the use of nickel resins to remove His-tagged growth factors, to further reduce contaminant levels in the lactic acid product.
實施例Example 4444 :評估非乳腺成體幹細胞中: Evaluation of non-mammary adult stem cells in 2'FL2'FL 、, LNFP-ILNFP-I 及and 2'FLNB2'FLNB 的產生generation
如實施例43所述的分離的間質細胞及再編程為乳腺樣細胞經CRISPR-CAS修飾以過度表現選自包含03、04、05、06、07、08、10、11、12及13之列舉之密碼子優化的N-乙醯葡萄糖胺β-1,3-半乳糖基轉移酶、來自智人的GDP-岩藻糖合成酶GFUS(UniProt ID Q13630)、以及來自幽門螺旋桿菌之密碼子優化的α-1,2-岩藻糖基轉移酶(GenBank No. AAD29863.1)。細胞以20,000 cells/cm2的密度接種至膠原塗佈的燒瓶上的完全生長培養基,並使其在完全生長培養基中黏附和擴增48小時,之後將培養基切換為完全泌乳培養基約7天。在如實施例43所述的培養之後,細胞進行UPLC以分析2'FL、LNFP-I(乳-N-岩藻五糖I,Fuc-a1,2-Gal-b1,3-GlcNAc-b1,3-Gal-b1,4-Glc)及2'FLNB的產生。Isolated stromal cells and reprogrammed to mammary-like cells as described in Example 43 were modified with CRISPR-CAS to overexpress the group consisting of 03, 04, 05, 06, 07, 08, 10, 11, 12, and 13 Enumerated codon-optimized N-acetylglucosamine beta-1,3-galactosyltransferase, GDP-fucose synthase GFUS from Homo sapiens (UniProt ID Q13630), and codons from Helicobacter pylori Optimized α-1,2-fucosyltransferase (GenBank No. AAD29863.1). Cells were seeded into complete growth medium on collagen-coated flasks at a density of 20,000 cells/cm2 and allowed to adhere and expand in complete growth medium for 48 hours, after which the medium was switched to complete lactation medium for approximately 7 days. After culturing as described in Example 43, cells were subjected to UPLC to analyze 2'FL, LNFP-I (lacto-N-fucopentaose I, Fuc-a1, 2-Gal-b1, 3-GlcNAc-b1, 3-Gal-b1,4-Glc) and 2'FLNB production.
實施例Example 4545 :評估非乳腺成體幹細胞中: Evaluation of non-mammary adult stem cells in LacNAcLacNAc 、唾液酸化, sialylation LacNAcLacNAc 及唾液酸and sialic acid -- 路易斯Lewis xx (( sialyl-Lewis xsialyl-Lewis x )的產生) is produced
如實施例43所述的分離的間質細胞及再編程為乳腺樣細胞經CRISPR-CAS修飾以過度表現選自包含15、16、17、18、19、20、21、22、23、26、27、28、31、32、33、34、35、36、39、40及41之列舉的N-乙醯葡萄糖胺β-1,4-半乳糖基轉移酶、來自智人的GDP-岩藻糖合成酶GFUS(UniProt ID Q13630)、來自智人的半乳糖苷α-1,3-岩藻糖基轉移酶FUT3(UniProt ID P21217)、來自小鼠的N-醯基神經胺酸胞苷醯轉移酶(UniProt ID Q99KK2)及來自智人的CMP-N-乙醯神經胺酸-β-1,4-半乳糖苷α-2,3-唾液酸轉移酶ST3GAL3(UniProt ID Q11203)。導入細胞的所有基因都針對宿主進行密碼子優化。細胞以20,000 cells/cm2的密度接種至膠原塗佈的燒瓶上的完全生長培養基,並使其在完全生長培養基中黏附和擴增48小時,之後將培養基切換為完全泌乳培養基約7天。在如實施例43所述的培養之後,細胞進行UPLC以分析LacNAc、唾液酸化LacNAc及唾液酸-路易斯x的產生。Isolated mesenchymal cells and reprogrammed to mammary-like cells as described in Example 43 were modified with CRISPR-CAS to overexpress selected from the group consisting of 15, 16, 17, 18, 19, 20, 21, 22, 23, 26, N-acetylglucosamine beta-1,4-galactosyltransferase enumerated in 27, 28, 31, 32, 33, 34, 35, 36, 39, 40 and 41, GDP-fucoid from Homo sapiens Carbohydrate synthase GFUS (UniProt ID Q13630), galactoside alpha-1,3-fucosyltransferase FUT3 (UniProt ID P21217) from Homo sapiens, N-acyl neuraminic acid cytidine from mouse Transferase (UniProt ID Q99KK2) and CMP-N-acetylneuraminic acid-β-1,4-galactoside α-2,3-sialyltransferase ST3GAL3 (UniProt ID Q11203) from Homo sapiens. All genes introduced into cells are codon-optimized for the host. Cells were seeded into complete growth medium on collagen-coated flasks at a density of 20,000 cells/cm2 and allowed to adhere and expand in complete growth medium for 48 hours, after which the medium was switched to complete lactation medium for approximately 7 days. After incubation as described in Example 43, cells were subjected to UPLC to analyze the production of LacNAc, sialylated LacNAc and sialic acid-Lewis x.
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