RU2018143972A3 - - Google Patents
Download PDFInfo
- Publication number
- RU2018143972A3 RU2018143972A3 RU2018143972A RU2018143972A RU2018143972A3 RU 2018143972 A3 RU2018143972 A3 RU 2018143972A3 RU 2018143972 A RU2018143972 A RU 2018143972A RU 2018143972 A RU2018143972 A RU 2018143972A RU 2018143972 A3 RU2018143972 A3 RU 2018143972A3
- Authority
- RU
- Russia
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/20—Sequence assembly
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/30—Unsupervised data analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/30—Data warehousing; Computing architectures
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Physics & Mathematics (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Biophysics (AREA)
- General Health & Medical Sciences (AREA)
- Biotechnology (AREA)
- Medical Informatics (AREA)
- Analytical Chemistry (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Organic Chemistry (AREA)
- Molecular Biology (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Data Mining & Analysis (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Software Systems (AREA)
- Databases & Information Systems (AREA)
- Epidemiology (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Bioethics (AREA)
- Artificial Intelligence (AREA)
- Public Health (AREA)
- Evolutionary Computation (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201662405824P | 2016-10-07 | 2016-10-07 | |
| US62/405,824 | 2016-10-07 | ||
| PCT/US2017/055653 WO2018068014A1 (en) | 2016-10-07 | 2017-10-06 | System and method for secondary analysis of nucleotide sequencing data |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| RU2018143972A3 true RU2018143972A3 (ru) | 2020-06-15 |
| RU2018143972A RU2018143972A (ru) | 2020-06-15 |
| RU2741807C2 RU2741807C2 (ru) | 2021-01-28 |
Family
ID=60480359
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| RU2018143972A RU2741807C2 (ru) | 2016-10-07 | 2017-10-06 | Система и способ вторичного анализа данных секвенирования нуклеотидов |
Country Status (15)
| Country | Link |
|---|---|
| US (2) | US11646102B2 (ru) |
| EP (2) | EP4586258A1 (ru) |
| JP (3) | JP6898441B2 (ru) |
| KR (3) | KR102515638B1 (ru) |
| CN (2) | CN115810396A (ru) |
| AU (3) | AU2017341069A1 (ru) |
| BR (1) | BR122023004154A2 (ru) |
| CA (1) | CA3027179C (ru) |
| IL (2) | IL300135B2 (ru) |
| MX (2) | MX2018015412A (ru) |
| MY (2) | MY193917A (ru) |
| RU (1) | RU2741807C2 (ru) |
| SG (2) | SG10201911912XA (ru) |
| WO (1) | WO2018068014A1 (ru) |
| ZA (2) | ZA201808277B (ru) |
Families Citing this family (18)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN103748236B (zh) | 2011-04-15 | 2018-12-25 | 约翰·霍普金斯大学 | 安全测序系统 |
| AU2013338393C1 (en) | 2012-10-29 | 2024-07-25 | The Johns Hopkins University | Papanicolaou test for ovarian and endometrial cancers |
| WO2017027653A1 (en) | 2015-08-11 | 2017-02-16 | The Johns Hopkins University | Assaying ovarian cyst fluid |
| EP3555318A1 (en) * | 2016-12-15 | 2019-10-23 | Illumina, Inc. | Methods and systems for determining paralogs |
| CN111868260B (zh) | 2017-08-07 | 2025-02-21 | 约翰斯霍普金斯大学 | 用于评估和治疗癌症的方法和材料 |
| WO2020092309A1 (en) | 2018-10-31 | 2020-05-07 | Illumina, Inc. | Systems and methods for grouping and collapsing sequencing reads |
| US11210554B2 (en) * | 2019-03-21 | 2021-12-28 | Illumina, Inc. | Artificial intelligence-based generation of sequencing metadata |
| MX2020014030A (es) | 2019-05-24 | 2021-03-09 | Illumina Inc | Extensión flexible de seed para mapeo genómico de tabla hash. |
| KR102292599B1 (ko) * | 2019-11-06 | 2021-08-23 | 주식회사 뷰웍스 | 광학 분석 장치 및 광학 분석 방법 |
| CA3170345A1 (en) | 2020-02-14 | 2021-08-19 | The Johns Hopkins University | Methods and materials for assessing nucleic acids |
| WO2021183833A1 (en) * | 2020-03-11 | 2021-09-16 | Illumina, Inc. | Incremental secondary analysis of nucleic acid sequences |
| US12006539B2 (en) * | 2020-03-17 | 2024-06-11 | Western Digital Technologies, Inc. | Reference-guided genome sequencing |
| CN113436683B (zh) * | 2020-03-23 | 2024-08-16 | 北京合生基因科技有限公司 | 筛选候选插入片段的方法和系统 |
| AU2022202798A1 (en) * | 2021-05-26 | 2022-12-15 | Genieus Genomics Pty Ltd | Processing sequencing data relating to amyotrophic lateral sclerosis |
| CN113299344A (zh) * | 2021-06-23 | 2021-08-24 | 深圳华大医学检验实验室 | 基因测序分析方法、装置、存储介质和计算机设备 |
| KR20250109684A (ko) * | 2022-10-13 | 2025-07-17 | 엘리먼트 바이오사이언스, 인크. | 차세대 염기서열 분석 데이터 분석에서 염기서열 분석 실행과 동시에 염기서열 분석 데이터 분리 |
| WO2025240241A1 (en) * | 2024-05-13 | 2025-11-20 | Illumina, Inc. | Modifying sequencing cycles during a sequencing run to meet customized coverage estimations for a target genomic region |
| CN119360966B (zh) * | 2024-12-24 | 2025-04-04 | 苏州大学 | 基于迭代k-mer分解的基因组组装方法及系统 |
Family Cites Families (19)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2357263A1 (en) | 2001-09-07 | 2003-03-07 | Bioinformatics Solutions Inc. | New methods for faster and more sensitive homology search in dna sequences |
| US7575865B2 (en) * | 2003-01-29 | 2009-08-18 | 454 Life Sciences Corporation | Methods of amplifying and sequencing nucleic acids |
| AU2005327056B2 (en) * | 2005-02-11 | 2010-09-16 | Smartgene Gmbh | Computer-implemented method and computer-based system for validating DNA sequencing data |
| DK2511843T3 (en) * | 2009-04-29 | 2017-03-27 | Complete Genomics Inc | METHOD AND SYSTEM FOR DETERMINING VARIATIONS IN A SAMPLE POLYNUCLEOTIDE SEQUENCE IN TERMS OF A REFERENCE POLYNUCLEOTIDE SEQUENCE |
| WO2011137368A2 (en) * | 2010-04-30 | 2011-11-03 | Life Technologies Corporation | Systems and methods for analyzing nucleic acid sequences |
| US20120203792A1 (en) | 2011-02-01 | 2012-08-09 | Life Technologies Corporation | Systems and methods for mapping sequence reads |
| US20140242588A1 (en) * | 2011-10-06 | 2014-08-28 | Sequenom, Inc | Methods and processes for non-invasive assessment of genetic variations |
| US10424394B2 (en) * | 2011-10-06 | 2019-09-24 | Sequenom, Inc. | Methods and processes for non-invasive assessment of genetic variations |
| KR101394339B1 (ko) * | 2012-03-06 | 2014-05-13 | 삼성에스디에스 주식회사 | 시드의 길이를 고려한 염기 서열 처리 시스템 및 방법 |
| US20130345066A1 (en) * | 2012-05-09 | 2013-12-26 | Life Technologies Corporation | Systems and methods for identifying sequence variation |
| US10504613B2 (en) * | 2012-12-20 | 2019-12-10 | Sequenom, Inc. | Methods and processes for non-invasive assessment of genetic variations |
| KR101481457B1 (ko) * | 2012-10-29 | 2015-01-12 | 삼성에스디에스 주식회사 | 리드 전체를 고려한 염기 서열 정렬 시스템 및 방법 |
| US20140238250A1 (en) * | 2013-02-28 | 2014-08-28 | Wki Holding Company, Inc. | Microwavable Heating Element and Composition |
| WO2014152990A1 (en) * | 2013-03-14 | 2014-09-25 | University Of Rochester | System and method for detecting population variation from nucleic acid sequencing data |
| WO2014186604A1 (en) * | 2013-05-15 | 2014-11-20 | Edico Genome Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
| US10191929B2 (en) | 2013-05-29 | 2019-01-29 | Noblis, Inc. | Systems and methods for SNP analysis and genome sequencing |
| RU2539038C1 (ru) * | 2013-11-02 | 2015-01-10 | Общество с ограниченной ответственностью "Гамма" | Способ секвенирования днк и устройство для его осуществления (варианты) |
| WO2016062713A1 (en) * | 2014-10-21 | 2016-04-28 | Barcelona Supercomputing Center - Centro Nacional De Supercomputación | A computational method for the identification of variants in nucleic acid sequences |
| CN104462211B (zh) * | 2014-11-04 | 2018-01-02 | 北京诺禾致源科技股份有限公司 | 重测序数据的处理方法和处理装置 |
-
2017
- 2017-10-06 KR KR1020227011278A patent/KR102515638B1/ko active Active
- 2017-10-06 MX MX2018015412A patent/MX2018015412A/es unknown
- 2017-10-06 KR KR1020237010257A patent/KR102694651B1/ko active Active
- 2017-10-06 BR BR122023004154-2A patent/BR122023004154A2/pt not_active Application Discontinuation
- 2017-10-06 IL IL300135A patent/IL300135B2/en unknown
- 2017-10-06 RU RU2018143972A patent/RU2741807C2/ru active
- 2017-10-06 CA CA3027179A patent/CA3027179C/en active Active
- 2017-10-06 CN CN202211557451.6A patent/CN115810396A/zh active Pending
- 2017-10-06 AU AU2017341069A patent/AU2017341069A1/en not_active Abandoned
- 2017-10-06 SG SG10201911912XA patent/SG10201911912XA/en unknown
- 2017-10-06 MY MYPI2018002632A patent/MY193917A/en unknown
- 2017-10-06 CN CN201780040788.0A patent/CN109416927B/zh not_active Expired - Fee Related
- 2017-10-06 IL IL263512A patent/IL263512B2/en unknown
- 2017-10-06 EP EP25150789.3A patent/EP4586258A1/en active Pending
- 2017-10-06 US US16/311,141 patent/US11646102B2/en active Active
- 2017-10-06 JP JP2019519631A patent/JP6898441B2/ja active Active
- 2017-10-06 SG SG11201810924WA patent/SG11201810924WA/en unknown
- 2017-10-06 EP EP17804976.3A patent/EP3458993A1/en not_active Withdrawn
- 2017-10-06 KR KR1020187038172A patent/KR102384832B1/ko active Active
- 2017-10-06 WO PCT/US2017/055653 patent/WO2018068014A1/en not_active Ceased
-
2018
- 2018-12-07 ZA ZA2018/08277A patent/ZA201808277B/en unknown
- 2018-12-11 MX MX2022011757A patent/MX2022011757A/es unknown
- 2018-12-17 MY MYPI2022003491A patent/MY209503A/en unknown
-
2020
- 2020-05-27 JP JP2020091991A patent/JP7051937B2/ja active Active
- 2020-07-22 AU AU2020207826A patent/AU2020207826B2/en not_active Ceased
-
2021
- 2021-03-15 ZA ZA2021/01720A patent/ZA202101720B/en unknown
- 2021-12-01 AU AU2021277671A patent/AU2021277671B2/en active Active
-
2022
- 2022-02-22 JP JP2022025557A patent/JP7387777B2/ja active Active
-
2023
- 2023-04-13 US US18/300,343 patent/US20230410945A1/en active Pending