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DE60316642D1 - Verbessertes Verfahren zur Bisulfit-Behandlung - Google Patents

Verbessertes Verfahren zur Bisulfit-Behandlung

Info

Publication number
DE60316642D1
DE60316642D1 DE60316642T DE60316642T DE60316642D1 DE 60316642 D1 DE60316642 D1 DE 60316642D1 DE 60316642 T DE60316642 T DE 60316642T DE 60316642 T DE60316642 T DE 60316642T DE 60316642 D1 DE60316642 D1 DE 60316642D1
Authority
DE
Germany
Prior art keywords
solid phase
glass
nucleic acid
bisulfite
improved process
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
DE60316642T
Other languages
English (en)
Other versions
DE60316642T2 (de
Inventor
Christine Dr Markert-Hahn
Dirk Dr Block
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Roche Diagnostics GmbH
Epigenomics AG
Original Assignee
Roche Diagnostics GmbH
Epigenomics AG
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Family has litigation
First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=32071078&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=DE60316642(D1) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Priority claimed from EP02019097A external-priority patent/EP1394172A1/de
Application filed by Roche Diagnostics GmbH, Epigenomics AG filed Critical Roche Diagnostics GmbH
Publication of DE60316642D1 publication Critical patent/DE60316642D1/de
Application granted granted Critical
Publication of DE60316642T2 publication Critical patent/DE60316642T2/de
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H21/00Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6827Hybridisation assays for detection of mutation or polymorphism
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6834Enzymatic or biochemical coupling of nucleic acids to a solid phase

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Compounds Of Iron (AREA)
  • Saccharide Compounds (AREA)
  • Solid-Sorbent Or Filter-Aiding Compositions (AREA)
DE60316642T 2002-08-29 2003-08-27 Verbessertes Verfahren zur Bisulfit-Behandlung Expired - Lifetime DE60316642T2 (de)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
EP02019097 2002-08-29
EP02019097A EP1394172A1 (de) 2002-08-29 2002-08-29 Verbessertes Verfahren Zur Bisulfit-Behandlung
EP02028114 2002-12-18
EP02028114 2002-12-18

Publications (2)

Publication Number Publication Date
DE60316642D1 true DE60316642D1 (de) 2007-11-15
DE60316642T2 DE60316642T2 (de) 2008-01-31

Family

ID=32071078

Family Applications (1)

Application Number Title Priority Date Filing Date
DE60316642T Expired - Lifetime DE60316642T2 (de) 2002-08-29 2003-08-27 Verbessertes Verfahren zur Bisulfit-Behandlung

Country Status (14)

Country Link
US (2) US9394332B2 (de)
EP (2) EP1829886B1 (de)
JP (2) JP5153048B2 (de)
CN (1) CN1271081C (de)
AT (1) ATE374782T1 (de)
AU (1) AU2003236461B2 (de)
CA (1) CA2438327C (de)
CY (1) CY1107118T1 (de)
DE (1) DE60316642T2 (de)
DK (2) DK1829886T3 (de)
ES (2) ES2545577T3 (de)
HU (1) HUE027240T2 (de)
PT (1) PT1394173E (de)
SI (2) SI1394173T1 (de)

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DE10154317B4 (de) * 2001-10-26 2005-06-09 Epigenomics Ag Verfahren zum Nachweis von Cytosin-Methylierungen in immobilisierten DNA Proben
US9394332B2 (en) 2002-08-29 2016-07-19 Epigenomics Ag Method for bisulfite treatment
US7262013B2 (en) * 2003-08-29 2007-08-28 Applera Corporation Bisulfite method
US7534873B2 (en) * 2003-08-29 2009-05-19 Applied Biosystems, Llc Method and materials for quaternary amine catalyzed bisulfite conversion of cytosine to uracil
US7368239B2 (en) * 2003-08-29 2008-05-06 Applera Corporation Method and materials for polyamine catalyzed bisulfite conversion of cytosine to uracil
US7371526B2 (en) * 2003-08-29 2008-05-13 Applera Corporation Method and materials for bisulfite conversion of cytosine to uracil
CA2540310A1 (en) 2003-10-09 2005-04-28 Epigenomics Ag Improved bisulfite conversion of dna
JPWO2005100240A1 (ja) * 2004-04-08 2008-03-06 東洋紡績株式会社 Dnaの脱アミノ化のための組成物及びメチル化dnaの検出方法
EP1632578A1 (de) 2004-09-03 2006-03-08 Roche Diagnostics GmbH Methode zur Dekontamination der DNA
JP2008515784A (ja) * 2004-09-21 2008-05-15 アプレラ コーポレイション メチル化dna分析のための硫酸水素ナトリウムの改良代替物として硫黄求核剤を使用する方法
US7658288B2 (en) 2004-11-08 2010-02-09 Applied Biosystems, Llc Bisulfite conversion reagent
ES2647483T3 (es) 2005-04-01 2017-12-21 Epigenomics Ag Conversión por bisulfito mejorada de ADN
EP1963352B1 (de) * 2005-12-14 2010-09-08 Roche Diagnostics GmbH Neues verfahren für die bisulfitbehandlung
US7820385B2 (en) * 2006-03-22 2010-10-26 The United States Of America As Represented By The Department Of Health And Human Services, Centers For Disease Control And Prevention Method for retaining methylation pattern in globally amplified DNA
US20080213870A1 (en) * 2007-03-01 2008-09-04 Sean Wuxiong Cao Methods for obtaining modified DNA from a biological specimen
EP2240603A4 (de) * 2008-01-03 2011-07-20 Univ Johns Hopkins Zusammensetzungen und verfahren für polynukleotidextraktion und methylierungsnachweis
WO2010037001A2 (en) 2008-09-26 2010-04-01 Immune Disease Institute, Inc. Selective oxidation of 5-methylcytosine by tet-family proteins
FR2940805B1 (fr) 2009-01-05 2015-10-16 Biomerieux Sa Procede d'amplification et/ou de detection d'acides nucleiques, kits et utilisations de ce procede
JP6138118B2 (ja) 2011-07-29 2017-05-31 ケンブリッジ エピジェネティクス リミテッド ヌクレオチド修飾の検出方法
ES2669512T3 (es) 2012-11-30 2018-05-28 Cambridge Epigenetix Limited Agente oxidante para nucleótidos modificados
WO2016198582A1 (en) * 2015-06-10 2016-12-15 Biocartis N.V. Improved detection of methylated dna
EP3839047A1 (de) * 2015-06-15 2021-06-23 Cepheid Integrierte reinigung und messung der dna-methylierung und ko-messung von mutationen und/oder mrna-expressionsniveaus in einer automatisierten reaktionskartusche
EP3551332B1 (de) 2016-12-12 2024-01-10 Cepheid Integrierte reinigung und messung der dna-methylierung und ko-messung von mutationen und/oder mrna-expressionsniveaus in einer automatisierten reaktionskartusche
CN108265050A (zh) * 2018-03-13 2018-07-10 普迈德(北京)科技有限公司 一种血浆直接亚硫酸氢盐转化的方法及其应用
WO2019178277A1 (en) 2018-03-13 2019-09-19 Grail, Inc. Anomalous fragment detection and classification
DE202019005627U1 (de) 2018-04-02 2021-05-31 Grail, Inc. Methylierungsmarker und gezielte Methylierungssondenpanels
AU2019351130B2 (en) 2018-09-27 2025-10-23 GRAIL, Inc Methylation markers and targeted methylation probe panel
WO2020132572A1 (en) 2018-12-21 2020-06-25 Grail, Inc. Source of origin deconvolution based on methylation fragments in cell-free-dna samples
DE102019118332B4 (de) 2019-07-07 2022-04-07 Ist Innuscreen Gmbh Verfahren und testkit zur bisulfitmodifizierung von dna
EP4096694A4 (de) 2020-01-30 2024-01-24 Prognomiq Inc Lungenbiomarker und verfahren zur verwendung davon
CN116157519A (zh) * 2020-07-29 2023-05-23 精密科学公司 经磺化dna的纯化
US12334190B2 (en) 2021-03-31 2025-06-17 PrognomIQ, Inc. Multi-omic assessment using proteins and nucleic acids
US12387508B2 (en) 2021-09-10 2025-08-12 PrognomIQ, Inc. Direct classification of raw biomolecule measurement data
EP4402473A4 (de) 2021-09-13 2025-07-30 Prognomiq Inc Verbesserter nachweis und quantifizierung von biomolekülen
CN114317761A (zh) * 2022-02-23 2022-04-12 厦门飞朔生物技术有限公司 一种宫颈癌相关基因甲基化检测方法

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Also Published As

Publication number Publication date
DK1829886T3 (en) 2015-08-17
ES2294231T3 (es) 2008-04-01
PT1394173E (pt) 2007-11-28
HUE027240T2 (en) 2016-10-28
EP1829886A2 (de) 2007-09-05
EP1829886B1 (de) 2015-07-29
CA2438327A1 (en) 2004-02-29
US9394332B2 (en) 2016-07-19
CY1107118T1 (el) 2012-10-24
EP1829886A3 (de) 2008-10-15
ES2545577T3 (es) 2015-09-14
CN1495192A (zh) 2004-05-12
DE60316642T2 (de) 2008-01-31
SI1394173T1 (sl) 2008-02-29
AU2003236461A1 (en) 2004-03-18
EP1394173B9 (de) 2008-10-15
DK1394173T3 (da) 2008-02-04
JP5310059B2 (ja) 2013-10-09
EP1394173A1 (de) 2004-03-03
ATE374782T1 (de) 2007-10-15
JP2004089195A (ja) 2004-03-25
JP2009106304A (ja) 2009-05-21
SI1829886T1 (sl) 2015-12-31
JP5153048B2 (ja) 2013-02-27
EP1394173B1 (de) 2007-10-03
US20160068888A1 (en) 2016-03-10
CN1271081C (zh) 2006-08-23
HK1062688A1 (en) 2004-11-19
US9868756B2 (en) 2018-01-16
CA2438327C (en) 2008-04-15
AU2003236461B2 (en) 2009-05-28
US20040241704A1 (en) 2004-12-02

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