A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate

Python library to handle Gene Ontology (GO) terms

Gene set variation analysis

GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.

Julia implementation of the next generation GSEA 🏔️

Gene Set Clustering based on Functional annotation

GMT files for the mulea R package

condense GSEA terms

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

Experimental version of data package associated with chipenrich

Bayesian tests for set enrichment 🍞

DBRetina python package

Differential expression analysis for single-cell RNA-seq data.

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

A Tidy Framework to Hack Gene Expression Signatures

piano - An R/Bioconductor package for gene set analysis

Transcriptiome Analysis in Python Imported from R

Package to gather gene information, annotations, and functions