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Archive for Edinburgh

a journal of the cha(ca)os (and fig) year

Posted in Books, Kids, Mountains, pictures, Travel, Wines with tags , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , on October 1, 2025 by xi'an

 Read the last part of The Thousand Autumns of Jacob de Zoet by David Mitchell, which still  takes place in the early 1800’s at the Dutch East India Company trading post Dejima in Nagasaki, as the historical aspects—like the attempt by a British ship to take over the outpost—beat the weakest features of the story. The end does feel rushed.

I made my first attempt at a chocolate tablet by mixing the cocoa—cacao in French—paste (kako in Créole) I brought back from Guadeloupe—made from the cocoa seeds I had bought at the market, roasting and crushing them—with crushed biscuits and a tiny bit of butter. The result was keeping with the bitter chocolate flavour I enjoy in 100% cocoa tablets, if presumably richer in fat and sugar, and more on the chocolate biscuit side! As the fig tree is now delivering at full speed, I am making compotes and office deliveries on most days, along with picking great tomatoes (which survived the heat waves) and the second chili pepper that grew from the chili tree this summer—sadly so low on the Scoville scale that it didn’t much differ from the peppers that also grew there—. In a bountiful year, the only failure was the buckwheat attempt, since no single flower came to deliver. Expert advice is thus sought for next year! This did not prevent me from resuming cooking whey (from skyr) and buckwheat, rye, or chestnut crêpes (on the Amazon iron griddle that no longer sticks!).

Watched and enjoyed the series Dept. Q, a gritty, depressing, and engrossing detective story that mixes cold cases, domestic violence, PTSD, sexism, several levels of guilt, and a variety of Scottish accents, from Edinburgh to the Western Isles. Despite the captivity thread in the scenario that I always dislike as a weak option in this kind of story, albeit making more sense as the episodes unfold. The grey areas surrounding most characters keeps the series at quite an acceptable level of engagement, as does the range of personalities thus displayed. This includes most victims that could have fallen into the poor-dear trap, but remain ambiguous and equally guilty to maintain the balance. Looking forward new seasons (not in the Scottish sense, where most days usually cover all four of them!). Also watched the second season of Wednesday, enjoyable enough if on the light and repetitive side. With Jenna Ortega still running the show, along with a stronger presence of Catherine Zeta-Jones. Just missing the Cramps moment of Season 1!

Rosslyn chapel [jatp]

Posted in pictures, Running, Travel with tags , , , , , , , , , on June 7, 2024 by xi'an

6th Workshop on Sequential Monte Carlo Methods (#2)

Posted in Mountains, pictures, Running, Statistics, Travel, University life with tags , , , , , , , , , , , , , , , , , , , , , , , on June 5, 2024 by xi'an

Managed to get back from the Pentland hills in time for the Wednesday afternoon session, which proved most interesting as close to my research interests!

Nicola Branchini presented his work with Victor Elvira (a close friend and coauthor, incidentally one of the organisers of the workshop!) on improving self normalised importance sampling by interpreting it as a ratio of estimators based on two samples (which may be the same) and attempting to optimise the joint distribution of said sample. The starting assumption is having (good) marginal importance functions, which means the goal here is in optimising a copula distribution targeting the ratio as quantity of interest. Optimality is however defined in terms of the approximate asymptotic variance of the ratio, which remains an approximation. The idea is nonetheless quite interesting and shows potential for connecting with bridge sampling and… AMIS! As an aside, the talk considered cases when the margins are multivariate, which requires a généralisation of Sklar’s theorem. Simo Särkä then demonstrated how highly parallel processors like GPUs can accommodate Bayesian filters and smoothers in state space models not requiring simulation, gaining a reduction in complexity from O(T) to O(log T). I had not really thought of parallel processing in the recent years, hence was quite pleased at hearing this resolution based on so-called associative scans, and see that implementations were already available in Julia/CUDA.

This was followed by a highly enjoyable poster session, including chats about ABC-SMC for discovery rates, infinite dimensional diffusions, Pareto smoothed importance samplings, &tc with posters by Hugo Marival (coauthor of our importance Monte Carlo recent paper) and Shreya Roy (a student at U of Warwick). With sunny views of Arthur’s Seat (and plenty of people at the top), contrary to the above! Followed by a private party dinner occupying half of a nearby and novel South Indian restaurant that proved quite tasty, local and definitely enjoyable.

For my last morning in town, albeit it was unrelated to the posted abstract, Pierre Del Moral spoke about noisy versions of the ensemble Kalman filter on linear diffusions that allowed for stable solutions under strong enough conditions, encompassing an impressive corpus of work over the past ten years. Alex Beskos presented antithetic multilevel methods for diffusions, which allow to improve the error in the discretisation, even though I did not fully get the whole idea (partly due to dozing out from time to time, a consequence of my last early rounds of Arthur’s Seat in the very early morn).

Daniel Paulin presented a novel unbiased method based on kinetic Langevin dynamics that combines advanced splitting methods with enhanced gradients, avoiding Metropolis correction by coupling and multilevel Monte Carlo approach, achieving unbiasedness by telescoping, but involving an avalanche of acronyms in the leapfrog/Gibbs steps.  And Adam Johansen (U of Warwick) on several recent papers of their divide-and-conquer filtering methods, introduced in a 2017 JCGS paper, following a decomposition of the state variable into low-dimensional components like branches and leaves of a tree.

6th Workshop on Sequential Monte Carlo Methods

Posted in Mountains, pictures, Statistics, Travel, University life with tags , , , , , , , , , , , , , , , , , , , , , , , , , , on May 16, 2024 by xi'an

Very glad to be back to an SMC workshop as it has been nine years since my attending SMC 2015 in Malakoff! The more for the workshop taking place in Edinburgh and at the Bayes Centre. It is one of these places where I feel somewhat returning to familiar grounds with accumulated memories. Like my last visit there when I had a tea with Mike Titterington…

The overall pace of the workshop was quite nice, with long breaks for informal discussions (and time for ‘oggin’!) and interesting poster late afternoons, helped by the small number of them at each instance, incl. one on reversible jump HMC. Here are a few scribbled entries about some talks along the first two days.

After my opening talk (!), Joaquín Míguez talked about the impact of a sequential (Euler-Marayama) discretisation scheme for stochastic differential equations on Bayesian filtering with control of the approximation effect. Axel Finke (in a joint work with Adrien Corenflos, now an ERC Ocean postdoc in Warwick) built a sequence of particle filter algorithms targeting good performances (high expected jumping distance) against both large dimensions and high time horizon, exploiting gradient shift MALA-like, as well as prior impact, with the conclusion that their jack-of-all-trades solutions, Particle­-MALA and Particle­-mGRAD, enjoyed this resistance in nearly normal models. Interesting reminder of the auxiliary particle trick and good insights on using the smoothing target, even when accounting for the computing time, but too many versions for a single talk without checking against the preprint.

The SMC sampler-like algorithm involves propagating N “seed” particles z(i), with a mutation mechanism consisting of the generation of N integrator snippets 𝗓:=(z,ψ⁢(z),ψ²⁢(z),…) started at every seed particle z(i), resulting in N×(T+1) particles which are then whittled down to a set of N seed particles using a standard resampling scheme. Andrieu et al., 2024

Christophe Andrieu talked about Monte Carlo sampling with integrator snippets, starting with recycling solutions for the leapfrog integrator HMC and unfolding Hamiltonians for moving more easily. With snippets representing discretised paths along the level sets being used as particles, picking zero, one, or more particles along each path, since importance weights are connection with multinomial HMC

This relatively small algorithmic modification of the conditional particle filter, which we call the conditional backward sampling particle filter has a dramatically improved performance over the conditional particle filter. Karjalainen et al., 2024

Anthony Lee looked at mixing times for backward sampling SMC (CBPF/ancestor sampling) cf Lee et al. (2020), where the backward step consists in computing the weight of a randomly drawn backward or ancestral history. Improving on earlier results to reach mixing time O(log T) and complexity O(T log T) (with T the time horizon). Thanks to maximal coupling and boundedness assumptions on the prior and likelihood functions.

Neil Chada presented a work on Bayesian multilevel Monte Carlo on deep networks. À la Giles, with a telescoping identity. Always puzzling to envision a prior on all parameters of a neural network. Achieving a computational cost inverse to the order of the MSE, at best. With a useful reminder that pushing the size of the NN to infinity results in a (poor) Gaussian process prior (Sell et al., 2023).

On my first evening, I stopped with a friend in my favourite Blonde [restaurant], as in almost every other visit to Edinburgh, enjoyable as always, but I also found the huge offer of Asian minimarkets in the area too tempting to resist, between Indian, Korean, and Chinese products. (Although with a disappointing hojicha!). As I could not reach any new Munro by train or bus within a reasonable time range I resorted to the nearer Pentland Hills, with a stop by Rosslyn Chapel (mostly of Da Vinci Code fame!, if classic enough). And some delays in finding a bus getting there (misled by google map!) and a trail (misled by my poor map reading skills) up the actual hills. The mist did not help either.

off to Edinburgh [and SMC 2024]

Posted in Books, Mountains, pictures, Statistics, Travel, University life with tags , , , , , , , on May 12, 2024 by xi'an

IMG_9351Today I am off to Edinburgh for the SMC 2024 workshop run by the ICMS. Looking forward meeting with long time friends and new ones, and learning about novel directions in the field. And returning to Edinburgh I last visited in 2019 for the opening of the Bayes Centre. Hoping to enjoy the nearby Arthur’s Seat volcano and maybe farther away Munroes, depending on the program, train schedules, and…weather forecasts!