Activity for David Mathog
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David Mathog created ticket #824
_lock_file broken?
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Ticket system works.
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Test ticket
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PBJelly's first pass in the mapping stages uses blasr's -m 4 output format, which...
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As far as I can tell there is nothing running on the system which would have killed...
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As far as I can there is nothing running on the system which would have killed blasr....
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mapping phase failed after 161 hours with: 2015-11-19 05:34:10,929 [INFO] Mapping...
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I'm curious why the decision was made to modify the headers in the input fasta rather...
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Also, it seems that ./data/reference/lambda.fasta is not stable over runs. The sequence...
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Found one thing, the file filtered_subreads.fastq is corrupt. The first entry starts...
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Found one thing, the file filtered_subreads.fastq is corrupt. The first entry starts...
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Me too. Tried changing "-bestn 5" to "-bestn 1" as one other thread suggested. That...
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Me too. Tried changing "-bestn 5" to "-bestn 1" as one other thread suggested. That...
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It must be from one (or both) of these: ./src/AS_RUN/.svn/text-base/Makefile.svn-base:...
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Ran the make as "root" in the same place, and it worked fine.
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Build failure, file and directory permissions in TIGR
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Ugh, this data has special cases written into tracearchiveToCA especially for it:...
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Yes, I think there is something strange going on with the TracearchiveToCA conversion....
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Yes, I think there is something strange going on with the TracearchiveToCA conversion....
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Amendment to the preceding. 0,-1 to 0,0 does fix THOSE entries, but it turned out...
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Amendment to the preceding. 0,-1 to 0,0 does fix THOSE entries, but it turned out...
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Hmm, changing the 0,-1 to 0,0 or 1,1 in the input file results in the same abort....
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Hmm, changing the 0,-1 to 0,0 or 1,1 results in the same abort. Something in gatekeeper...
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conflicting clv, clr requirements, no clear range vs. gatekeeper
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gatekeeper segfault on reading frg library
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