Open Source S/R Software
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S/R Software
Browse free open source S/R Software and projects below. Use the toggles on the left to filter open source S/R Software by OS, license, language, programming language, and project status.
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The Ultimate Employee Recognition and Rewards ProgramThe Bucketlist platform makes it easy and fun for employees and managers to recognize and reward one another for milestones, achievements, and a job well done. It's so easy as it integrates with the programs you already use every day. Unlike any other recognition program, Bucketlist enables companies to reward employees exactly the way they want, resulting in a 97% product satisfaction score. There are thousands of rewards to choose from, plus you can add custom rewards to suit your company.
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Identity Matrix AI - #1 in B2B Lead GenerationIdentity Matrix transforms anonymous website traffic into detailed visitor profiles with impressive accuracy, offering valuable insights for businesses to enhance marketing and sales strategies. For companies serious about capitalizing on every website visitor, this platform is second to none.
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IRAMUTEQ : Interface de R pour les Analyses Multidimensionnelles de Textes et de Questionnaires. Logiciel de traitement de données pour des corpus texte ou de type individus/caractères. Permet notamment de réaliser des analyses de type "ALCESTE"
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PS Matching in SPSS
Propensity score matching in SPSS
Propensity score matching in SPSS Provides SPSS custom dialog to perform propensity score matching. Using the SPSS-R plugin, the software calls several R packages, mainly MatchIt and optmatch. Proper citations of these R packages is provided in the program. -
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SimpleITK: a simplified layer build on top of the Insight Toolkit (ITK), intended to facilitate its use in rapid prototyping, education and interpreted languages.
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R packages (maintained by YJLEE)
R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.
These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM).">
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Connect with customers in one appDialpad Connect is an AI-powered unified communications platform that combines voice, video, and messaging to enhance team collaboration and customer interactions. It features real-time call transcription, automated call summaries, and AI-generated action items to help users stay focused during conversations. The platform integrates seamlessly with popular business apps like Salesforce, Zendesk, Microsoft Teams, and Google Workspace to streamline workflows. Designed for businesses of all sizes, Dialpad Connect delivers enterprise-grade reliability with 100% uptime SLA and robust disaster recovery. Security and privacy are core priorities, meeting standards like GDPR, HIPAA, and SOC 2 compliance. Dialpad Connect helps companies elevate customer experiences while boosting team productivity.
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NppToR: R in Notepad++
NppToR provides R auto-completion and code passing between Notepad++ a
Similar to the windows R gui built in editor, NppToR aims to extend the functionality of code passing to the Notepad++ code editor. In addition to passing to the R gui, NppToR provides optional passing to a PuTTY window for passing to an R instance a remote machine. Easy shortcuts are also provided for easy batch execution, with a monitor for longer running scripts. -
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gVirtualXRay
Virtual X-Ray Imaging Library on GPU
gVirtualXRay is a C++ library to simulate X-ray imaging. It is based on the Beer-Lambert law to compute the absorption of light (i.e. photons) by 3D objects (here polygon meshes). It is implemented on the graphics processing unit (GPU) using the OpenGL Shading Language (GLSL). SimpleGVXR is a smaller library build on the top of gVirtualXRay. It provides wrappers to Python, R, Ruby, Tcl, C#, Java, and GNU Octave. -
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TXM
Unicode XML TEI text analysis platform
TXM is a free and open-source cross-platform Unicode & XML based text analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in. DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP full text search engine (http://cwb.sourceforge.net) and a range of statistical functions (factorial analysis, classification, cooccurrency analysis, etc.) based on R packages (http://www.r-project.org). Read the scientific background at the Textométrie project web site http://textometrie.ens-lyon.fr/?lang=en. Read a full description at the TEI Tools wiki http://wiki.tei-c.org/index.php/TXM. -
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mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
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The application Bio7 is an integrated development environment for ecological modelling and contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.
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Connect your teams with an integrated digital workplaceClaromentis provides a reliable and feature-rich business intranet software for modern organizations. Offering collaborative, social, knowledge-sharing, and enterprise-level applications, Claromentis' intranet platform enables businesses to enjoy greater productivity, collaboration, and security. Claromentis' intranet software can be deployed on-premise, in the cloud, or on a company's data center. It can also be customized to meet unique business needs through the addition of modules.
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##### The RKWard project has moved! ##### Find the most recent news and downloads at http://rkward.kde.org . RKWard aims to provide an easily extensible, easy to use IDE/GUI for R. RKWard tries to combine the power of the R-language with the (relative) ease of use of commercial statistics tools.
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Toolchain for quantification of fluorescence intensity and morphological parameters in single cells using microscope based cytometry.
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libirt
The new site is at http://psychometricon.net/libirt/
The new site is at http://psychometricon.net/libirt/ Library of functions to estimate the items and abilities from the responses of subjects to a questionnaire. The IRT models supported are the logistic model, the multivariate logistic model, the graded model and smoothing by penalization and kernel. -
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estimate_project
ESTIMATE
ESTIMATE (Estimation of STromal and Immune cells in MAlignant Tumors using Expression data) is a new approach to use gene expression signature to infer the fraction of stromal and immune cells in tumor tissues. -
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The igraph library
Library for creating and manipulating graphs
This is a library for creating and manipulating graphs with focus on speedy operations for large, sparse graphs. -
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The Life Cycle Assessment Spreadsheet allows you to calculate carbon footprints and other environmental impacts for given product systems. Use requires basic skills in LCA and matrix algebra, but rewards effort with professional analytical tools.
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OxyWitleaf2CSV
Witleaf pulse oxymeter BIN format data decoder.
The simple program is a Witleaf handheld pulse oxymeter BIN file format data decoder. It reads BIN-files produced by popular professional pulse oxymeters manufactured by Shenzhen Witleaf Medical Electronics Co., Ltd. (like the WIT-S300 shown in the photo on the project icon) and produces a CSV-formatted output with the extracted data to stdout (gets printed to the console if not directed otherwise). More info on https://github.com/mrKirushko/OxyWitleaf2CSV . -
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bootf2BCA
computing f2 bootstrap CI BCA
Computing similarity factor (f2) bootstrap bias corrected and accelerated confidence interval -
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MVSE
Estimator of climate-driven, mosquito-borne viral suitability index
Understanding how climate dictates the timing and potential of mosquito-borne viral transmission is essential for preparedness of public health systems and design of control strategies. We developed the Mosquito-borne Viral Suitability Estimator (MVSE) software package for the R programming environment. The package estimates a suitability index based on a climate-driven mathematical expression for the basic reproductive number (R0). By accounting for local climatic variables, as well as viral, vector and human priors, suitability can be estimated for specific regions, hosts, vectors and viral species. MVSE v0.3 and v1.01r are available for download in this repo. UPDATE Oct/2021: note that a correction has been made to the documentation of v1.01r. The most recent version is the file "MVSE_v1.01r_corrections_to_documentation.zip". No changes have been made to the code itself. Article for original v0.3: https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.132 -
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PAMGuide
An analysis tool in MATLAB and R for acoustic habitat characterisation
PAMGuide is acoustic analysis software for the characterisation of the acoustic environment from sound recordings. PAMGuide can be used to produce calibrated spectrograms and statistical analyses of sound levels, and is provided in both MATLAB and R. A Tutorial on getting started with PAMGuide can be downloaded here: http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12330/suppinfo PAMGuide was published as supplementary material to the following Open Access journal article: Merchant, N.D., Fristrup, K.M., Johnson, M.P., Tyack, P.L., Witt, M.J., Blondel, P., Parks, S.E. (2015). Measuring acoustic habitats. Methods in Ecology and Evolution. http://dx.doi.org/10.1111/2041-210X.12330 -
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cpR Chemical Pathology interface for R
A graphical user interface to R for use in Clinical Chemistry
This project is a graphical user interface to the R statistical programming language designed for use in Clinical Chemistry. It allows the user to perform Passing Bablok, Deming and Linear Regression and to produce high quality images in any file format for publication. The front end is written in Python 3.3 and PyQt4 and the form was designed using Qt4 Designer. The statistical analysis is written in R. The compiled binary was made with cx_freeze. This software is free and open-source. It is released under the GNU Public license and comes with absolutely no warranty. -
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SPINA
Structure parameter inference approach for endocrine feedback control
SPINA is software for the rapid, reliable and accurate determination of constant structure parameters of endocrine feedback control systems. It is a class of static function tests that require nothing more than steady-state concentrations of hormones or metabolites obtained in vivo. The first version of this cybernetic approach had been developed for the evaluation of the functional status of the thyroid gland, i.e. thyroid's secretory capacity (gain of thyroid, GT or SPINA-GT) and sum activity of peripheral deiodinases (GD or SPINA-GD). A second version has been established for insulin-glucose homeostasis. It delivers the secretory capacity of pancreatic beta cells (SPINA-GBeta), an estimate for the insulin receptor amplification (SPINA-GR) and a static disposition index as a measure for the loop gain of the feedback loop (SPINA-DI). Both implementations of SPINA have been validated in more than 50 clinical studies based on large cohorts. -
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We are developing data standards and software tools that implement these standards to develop a systemic approach to modeling, capturing, analyzing and disseminating flow cytometry data.
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Mass-Up
MALDI-TOF data analysis tool
Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data. Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data. -
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PyRate
Bayesian Estimation of Speciation and Extinction from Fossil Data
PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework. The method was described by D Silvestro, J Schnitzler, LH Liow, A Antonelli, and N Salamin in Systematic Biology (http://sysbio.oxfordjournals.org/content/early/2014/02/08/sysbio.syu006.abstract). *Please download the most up-to-date code from the "PyRate code" tab on this page or from: https://github.com/dsilvestro/PyRate * *An updated manual can be found here: https://github.com/dsilvestro/PyRate/tree/master/tutorials *