| An open source knowledge graph ecosystem for the life sciences TJ Callahan, IJ Tripodi, AL Stefanski, L Cappelletti, SB Taneja, JM Wyrwa, ... Scientific Data 11 (1), 363, 2024 | 68 | 2024 |
| REAL: A retrieval-augmented entity linking approach for biomedical concept recognition D Shlyk, T Groza, M Mesiti, S Montanelli, E Cavalleri Proceedings of the 23rd workshop on biomedical natural language processing …, 2024 | 30 | 2024 |
| An ontology-based knowledge graph for representing interactions involving RNA molecules E Cavalleri, A Cabri, M Soto-Gomez, S Bonfitto, P Perlasca, J Gliozzo, ... Scientific Data 11 (1), 906, 2024 | 27* | 2024 |
| A meta-graph for the construction of an rna-centered knowledge graph E Cavalleri, S Bonfitto, A Cabri, J Gliozzo, P Perlasca, M Soto-Gomez, ... International Work-Conference on Bioinformatics and Biomedical Engineering …, 2023 | 12 | 2023 |
| SPIREX: Improving LLM-based relation extraction from RNA-focused scientific literature using graph machine learning E Cavalleri, M Soto Gomez, A Pashaeibarough, D Malchiodi, JH Caufield, ... Proceedings of Workshops at the 50th International Conference on Very Large …, 2024 | 10 | 2024 |
| Intrinsic-dimension analysis for guiding dimensionality reduction and data fusion in multi-omics data processing J Gliozzo, M Soto-Gomez, V Guarino, A Bonometti, A Cabri, E Cavalleri, ... Artificial intelligence in medicine 160, 103049, 2025 | 9 | 2025 |
| RNA knowledge-graph analysis through homogeneous embedding methods F Torgano, M Soto Gomez, M Zignani, J Gliozzo, E Cavalleri, M Mesiti, ... Bioinformatics Advances 5 (1), vbaf109, 2025 | 5 | 2025 |
| RNAcentral in 2026: genes and literature integration Nucleic Acids Research 54 (D1), D303-D313, 2026 | 3 | 2026 |
| Fine-tuning of conditional Transformers improves in silico enzyme prediction and generation M Nicolini, E Saitto, REJ Franco, E Cavalleri, AJG Alfonso, D Malchiodi, ... Computational and Structural Biotechnology Journal 27, 1318, 2025 | 3* | 2025 |
| On the Extraction of Meaningful RNA Interactions from Scientific Publications through LLMs and SPIRES. E Cavalleri, M Mesiti EDBT/ICDT Workshops, 2024 | 3 | 2024 |
| Fine-tuning of Conditional Transformers Improves the Generalization of Functionally Characterized Proteins N Marco, D Malchiodi, A Cabri, E Cavalleri, M Mesiti, P Alberto, ... Proceedings of the 17th International Joint Conference on Biomedical …, 2024 | 3 | 2024 |
| Construction and enhancement of an RNA-based knowledge graph for discovering new RNA drugs E Cavalleri, M Mesiti 2024 IEEE 40th International Conference on Data Engineering (ICDE), 5639-5643, 2024 | 2 | 2024 |
| RNA-KG v2.0: an RNA-centered knowledge graph with properties E Cavalleri, P Perlasca, M Mesiti NAR Genomics and Bioinformatics 8 (1), lqaf194, 2026 | 1 | 2026 |
| A Semantic Schema-Based Catalog for Identifying Joinable Columns E Cavalleri, M Castagna, M Mesiti Flexible Query Answering Systems: 16th International Conference, FQAS 2025 …, 2025 | 1* | 2025 |
| RNA Knowledge Graph Analysis via Embedding Methods F Torgano, E Cavalleri, J Gliozzo, F Stacchietti, E Saitto, M Mesiti, ... WSEAS Transactions on Biology and Biomedicine 21, 302-312, 2024 | 1 | 2024 |
| Prompt Engineering Approaches for Working with Biomedical Knowledge Graphs through LLMs M Mesiti, E Cavalleri, M Castagna, P Perlasca, D Shlyk CEUR WORKSHOP PROCEEDINGS 4121, 1-7, 2025 | | 2025 |
| Initial achievements in relation extraction from RNA-focused scientific papers E Cavalleri, M Soto-Gomez, A Pashaeibarough, D Malchiodi, H Caufield, ... CEUR WORKSHOP PROCEEDINGS 3741, 61-69, 2024 | | 2024 |
| Towards the Construction of an RNA-centered Knowledge Graph E Cavalleri, S Bonfitto, A Cabri, J Gliozzo, P Perlasca, M Soto-Gomez, ... 31st Symposium of Advanced Database Systems 3478 (30), 2023 | | 2023 |
| In silico enzyme prediction and generation by fine tuning protein language models M Nicolini, E Saitto, RE Jimenez, E Cavalleri, AJG Alfonso, D Malchiodi, ... | | |
| Enhancing Enzyme Generation with Fine-Tuned Conditional Transformers M Nicolini, E Saitto, R Jiménez, E Cavalleri, M Mesiti, A Galeano, ... | | |
Marco MesitiAssociate Professor, Università di milanoVerified email at di.unimi.it
