| The Human Phenotype Ontology in 2024: phenotypes around the world MA Gargano, N Matentzoglu, B Coleman, EB Addo-Lartey, ... Nucleic acids research 52 (D1), D1333-D1346, 2024 | 321 | 2024 |
| Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes JT Reese, H Blau, E Casiraghi, T Bergquist, JJ Loomba, TJ Callahan, ... EBioMedicine 87, 2023 | 191 | 2023 |
| Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning JH Caufield, H Hegde, V Emonet, NL Harris, MP Joachimiak, ... Bioinformatics 40 (3), btae104, 2024 | 175 | 2024 |
| Global landscape of cell envelope protein complexes in Escherichia coli M Babu, C Bundalovic-Torma, C Calmettes, S Phanse, Q Zhang, Y Jiang, ... Nature biotechnology 36 (1), 103-112, 2018 | 150 | 2018 |
| Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ... Clinical and translational science 15 (8), 1848-1855, 2022 | 107 | 2022 |
| The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species TE Putman, K Schaper, N Matentzoglu, VP Rubinetti, FS Alquaddoomi, ... Nucleic acids research 52 (D1), D938-D949, 2024 | 85 | 2024 |
| A comparison of two-hybrid approaches for detecting protein–protein interactions J Mehla, JH Caufield, N Sakhawalkar, P Uetz Methods in enzymology 586, 333-358, 2017 | 79 | 2017 |
| The yeast two-hybrid system: a tool for mapping protein–protein interactions J Mehla, JH Caufield, P Uetz Cold Spring Harbor Protocols 2015 (5), pdb. top083345, 2015 | 68 | 2015 |
| A comparison and optimization of yeast two-hybrid systems JH Caufield, N Sakhawalkar, P Uetz Methods 58 (4), 317-324, 2012 | 66 | 2012 |
| Clinical temporal relation extraction with probabilistic soft logic regularization and global inference Y Zhou, Y Yan, R Han, JH Caufield, KW Chang, Y Sun, P Ping, W Wang Proceedings of the AAAI Conference on Artificial Intelligence 35 (16), 14647 …, 2021 | 62 | 2021 |
| On the limitations of large language models in clinical diagnosis JT Reese, D Danis, JH Caufield, T Groza, E Casiraghi, G Valentini, ... MedRxiv, 2023.07. 13.23292613, 2024 | 58 | 2024 |
| A reference set of curated biomedical data and metadata from clinical case reports JH Caufield, Y Zhou, AO Garlid, SP Setty, DA Liem, Q Cao, JM Lee, ... Scientific data 5 (1), 1-18, 2018 | 44 | 2018 |
| Progress toward a universal biomedical data translator K Fecho, AE Thessen, SE Baranzini, C Bizon, JJ Hadlock, S Huang, ... Clinical and Translational Science 15 (8), 1838-1847, 2022 | 42 | 2022 |
| An evaluation of GPT models for phenotype concept recognition T Groza, H Caufield, D Gration, G Baynam, MA Haendel, PN Robinson, ... BMC Medical Informatics and Decision Making 24 (1), 30, 2024 | 41 | 2024 |
| Studying protein complexes by the yeast two-hybrid system SV Rajagopala, P Sikorski, JH Caufield, A Tovchigrechko, P Uetz Methods 58 (4), 392-399, 2012 | 41 | 2012 |
| KG-Hub—building and exchanging biological knowledge graphs JH Caufield, T Putman, K Schaper, DR Unni, H Hegde, TJ Callahan, ... Bioinformatics 39 (7), btad418, 2023 | 40 | 2023 |
| Specific N‐terminal cleavage of ribosomal protein L27 in Staphylococcus aureus and related bacteria EA Wall, JH Caufield, CE Lyons, KA Manning, T Dokland, GE Christie Molecular microbiology 95 (2), 258-269, 2015 | 36 | 2015 |
| Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease DA Liem, S Murali, D Sigdel, Y Shi, X Wang, J Shen, H Choi, JH Caufield, ... American Journal of Physiology-Heart and Circulatory Physiology 315 (4 …, 2018 | 34 | 2018 |
| Gene set summarization using large language models MP Joachimiak, JH Caufield, NL Harris, H Kim, CJ Mungall ArXiv, arXiv: 2305.13338 v3, 2024 | 32 | 2024 |
| Mapping protein–protein interactions using yeast two-hybrid assays J Mehla, JH Caufield, P Uetz Cold Spring Harbor Protocols 2015 (5), pdb. prot086157, 2015 | 31 | 2015 |
Christopher J MungallLawrence Berkeley National LaboratoryVerified email at lbl.gov
