| The gene ontology knowledgebase in 2023 SA Aleksander, J Balhoff, S Carbon, JM Cherry, HJ Drabkin, D Ebert, ... Genetics 224 (1), iyad031, 2023 | 2774* | 2023 |
| The Zebrafish Information Network: the zebrafish model organism database J Sprague, L Bayraktaroglu, D Clements, T Conlin, D Fashena, K Frazer, ... Nucleic acids research 34 (suppl_1), D581-D585, 2006 | 332 | 2006 |
| ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics DG Howe, YM Bradford, T Conlin, AE Eagle, D Fashena, K Frazer, ... Nucleic acids research 41 (D1), D854-D860, 2012 | 325 | 2012 |
| ZFIN: enhancements and updates to the Zebrafish Model Organism Database Y Bradford, T Conlin, N Dunn, D Fashena, K Frazer, DG Howe, J Knight, ... Nucleic acids research 39 (suppl_1), D822-D829, 2010 | 278 | 2010 |
| Zebrafish information network, the knowledgebase for Danio rerio research YM Bradford, CE Van Slyke, L Ruzicka, A Singer, A Eagle, D Fashena, ... Genetics 220 (4), iyac016, 2022 | 242 | 2022 |
| Zebrafish models of human disease: gaining insight into human disease at ZFIN YM Bradford, S Toro, S Ramachandran, L Ruzicka, DG Howe, A Eagle, ... ILAR journal 58 (1), 4-16, 2017 | 215 | 2017 |
| The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources L Ruzicka, DG Howe, S Ramachandran, S Toro, CE Van Slyke, ... Nucleic acids research 47 (D1), D867-D873, 2019 | 179 | 2019 |
| Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning JH Caufield, H Hegde, V Emonet, NL Harris, MP Joachimiak, ... Bioinformatics 40 (3), btae104, 2024 | 175 | 2024 |
| The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes J Sprague, L Bayraktaroglu, Y Bradford, T Conlin, N Dunn, D Fashena, ... Nucleic acids research 36 (suppl_1), D768-D772, 2007 | 174 | 2007 |
| The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching DG Howe, YM Bradford, A Eagle, D Fashena, K Frazer, P Kalita, P Mani, ... Nucleic acids research 45 (D1), D758-D768, 2017 | 115 | 2017 |
| A simple standard for sharing ontological mappings (SSSOM) N Matentzoglu, JP Balhoff, SM Bello, C Bizon, M Brush, TJ Callahan, ... Database 2022, baac035, 2022 | 108 | 2022 |
| Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ... Clinical and translational science 15 (8), 1848-1855, 2022 | 107 | 2022 |
| ZFIN, The zebrafish model organism database: Updates and new directions L Ruzicka, YM Bradford, K Frazer, DG Howe, H Paddock, ... genesis 53 (8), 498-509, 2015 | 101 | 2015 |
| The Gene Ontology knowledgebase in 2023. GENETICS 224, iyad031 Gene Ontology Consortium, SA Aleksander, J Balhoff, S Carbon, ... | 100 | 2023 |
| The Gene Ontology Knowledgebase in 2026 Nucleic Acids Research 54 (D1), D1779-D1792, 2026 | 99* | 2026 |
| The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species TE Putman, K Schaper, N Matentzoglu, VP Rubinetti, FS Alquaddoomi, ... Nucleic acids research 52 (D1), D938-D949, 2024 | 85 | 2024 |
| The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio CE Van Slyke, YM Bradford, M Westerfield, MA Haendel Journal of biomedical semantics 5 (1), 12, 2014 | 80 | 2014 |
| Harmonizing model organism data in the Alliance of Genome Resources Genetics 220 (4), iyac022, 2022 | 75 | 2022 |
| The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics. SAT Moxon, H Solbrig, DR Unni, D Jiao, RM Bruskiewich, JP Balhoff, ... ICBO 3073, 148-151, 2021 | 63 | 2021 |
| Model organism data evolving in support of translational medicine DG Howe, JA Blake, YM Bradford, CJ Bult, BR Calvi, SR Engel, JA Kadin, ... Lab Animal 47 (10), 277-289, 2018 | 54 | 2018 |
