| EnrichNet: network-based gene set enrichment analysis E Glaab, A Baudot, N Krasnogor, R Schneider, A Valencia Bioinformatics 28 (18), i451-i457, 2012 | 397 | 2012 |
| Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 357 | 2019 |
| Random Walk with Restart on Multiplex and Heterogeneous Biological Networks A Valdeolivas, L Tichit, C Navarro, S Perrin, G Odelin, N Levy, P Cau, ... Bioinformatics, 2018 | 346 | 2018 |
| Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer L Cantini, P Zakeri, C Hernandez, A Naldi, D Thieffry, E Remy, A Baudot Nature Communications 12 (1), 1-12, 2021 | 240 | 2021 |
| Molecular Evidence for the Inverse Comorbidity between Central Nervous System Disorders and Cancers Detected by Transcriptomic Meta-analyses K Ibáñez, C Boullosa, R Tabarés-Seisdedos, A Baudot, A Valencia PLoS genetics 10 (2), e1004173, 2014 | 229 | 2014 |
| No paradox, no progress: inverse cancer comorbidity in people with other complex diseases R Tabarés-Seisdedos, N Dumont, A Baudot, JM Valderas, J Climent, ... The lancet oncology 12 (6), 604-608, 2011 | 170 | 2011 |
| Discovery of drug synergies in gastric cancer cells predicted by logical modeling Å Flobak, A Baudot, E Remy, L Thommesen, D Thieffry, M Kuiper, ... PLoS computational biology 11 (8), e1004426, 2015 | 151 | 2015 |
| A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer's Disease, Glioblastoma and Lung cancer. J Sánchez-Valle, H Tejero, K Ibáñez, JL Portero, M Krallinger, ... Scientific reports 7 (1), 4474, 2017 | 121 | 2017 |
| TopoGSA: network topological gene set analysis E Glaab, A Baudot, N Krasnogor, A Valencia Bioinformatics 26 (9), 1271-1272, 2010 | 107 | 2010 |
| Current and future directions in network biology M Zitnik, MM Li, A Wells, K Glass, D Morselli Gysi, A Krishnan, TM Murali, ... Bioinformatics advances 4 (1), vbae099, 2024 | 96 | 2024 |
| Extending pathways and processes using molecular interaction networks to analyse cancer genome data E Glaab, A Baudot, N Krasnogor, A Valencia BMC bioinformatics 11 (1), 1-11, 2010 | 85 | 2010 |
| Identifying communities from multiplex biological networks G Didier, C Brun, A Baudot PeerJ 3, e1525, 2015 | 82 | 2015 |
| Interactome mapping of the phosphatidylinositol 3-kinase-mammalian target of rapamycin pathway identifies deformed epidermal autoregulatory factor-1 as a new glycogen synthase … F Pilot-Storck, E Chopin, JF Rual, A Baudot, P Dobrokhotov, ... Molecular & Cellular Proteomics 9 (7), 1578-1593, 2010 | 76 | 2010 |
| The functional landscape of Hsp27 reveals new cellular processes such as DNA repair and alternative splicing and proposes novel anticancer targets M Katsogiannou, C Andrieu, V Baylot, A Baudot, NJ Dusetti, O Gayet, ... Molecular & Cellular Proteomics 13 (12), 3585-3601, 2014 | 74 | 2014 |
| The Gastrin and Cholecystokinin Receptors mediated signaling network: A scaffold for data analysis and new hypotheses on regulatory mechanisms S Tripathi, Å Flobak, K Chawla, A Baudot, JN Doni, N Skjøndal-Bar, ... | 68 | 2015 |
| Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer J Forés-Martos, F Catalá-López, J Sánchez-Valle, K Ibáñez, H Tejero, ... Molecular autism 10 (1), 1-16, 2019 | 62 | 2019 |
| MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach L Pio-Lopez, A Valdeolivas, L Tichit, É Remy, A Baudot Scientific Reports 11 (1), 1-20, 2021 | 56 | 2021 |
| Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships J Sánchez-Valle, H Tejero, JM Fernández, D Juan, B Urda-García, ... Nature Communications 11 (1), 1-13, 2020 | 53 | 2020 |
| Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters L Spinelli, P Gambette, CE Chapple, B Robisson, A Baudot, H Garreta, ... BioSystems 113 (2), 91-95, 2013 | 49 | 2013 |
| Mutated genes, pathways and processes in tumours A Baudot, V de la Torre, A Valencia EMBO reports 11 (10), 805-810, 2010 | 48 | 2010 |
Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
