| Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer L Cantini, P Zakeri, C Hernandez, A Naldi, D Thieffry, E Remy, A Baudot Nature communications 12 (1), 124, 2021 | 239 | 2021 |
| Detection of gene communities in multi-networks reveals cancer drivers L Cantini, E Medico, S Fortunato, M Caselle Scientific reports 5 (1), 17386, 2015 | 150 | 2015 |
| Independent component analysis for unraveling the complexity of cancer omics datasets N Sompairac, PV Nazarov, U Czerwinska, L Cantini, A Biton, A Molkenov, ... International Journal of molecular sciences 20 (18), 4414, 2019 | 124 | 2019 |
| Interpreting pathways to discover cancer driver genes with Moonlight A Colaprico, C Olsen, MH Bailey, GJ Odom, T Terkelsen, TC Silva, ... Nature communications 11 (1), 69, 2020 | 114 | 2020 |
| MicroRNA–mRNA interactions underlying colorectal cancer molecular subtypes L Cantini, C Isella, C Petti, G Picco, S Chiola, E Ficarra, M Caselle, ... Nature communications 6 (1), 8878, 2015 | 92 | 2015 |
| Microglia maintain structural integrity during fetal brain morphogenesis AR Lawrence, A Canzi, C Bridlance, N Olivié, C Lansonneur, C Catale, ... Cell 187 (4), 962-980. e19, 2024 | 91 | 2024 |
| Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer L Cantini, G Bertoli, C Cava, T Dubois, A Zinovyev, M Caselle, ... Nucleic acids research 47 (5), 2205-2215, 2019 | 86 | 2019 |
| Determining the optimal number of independent components for reproducible transcriptomic data analysis U Kairov, L Cantini, A Greco, A Molkenov, U Czerwinska, E Barillot, ... BMC genomics 18 (1), 712, 2017 | 82 | 2017 |
| Classification of gene signatures for their information value and functional redundancy L Cantini, L Calzone, L Martignetti, M Rydenfelt, N Blüthgen, E Barillot, ... NPJ systems biology and applications 4 (1), 2, 2017 | 76 | 2017 |
| Evaluating the reproducibility of single-cell gene regulatory network inference algorithms Y Kang, D Thieffry, L Cantini Frontiers in genetics 12, 617282, 2021 | 57 | 2021 |
| Optimal transport improves cell–cell similarity inference in single-cell omics data GJ Huizing, G Peyré, L Cantini Bioinformatics 38 (8), 2169-2177, 2022 | 56 | 2022 |
| Paired single-cell multi-omics data integration with Mowgli GJ Huizing, IM Deutschmann, G Peyré, L Cantini Nature Communications 14 (1), 7711, 2023 | 45 | 2023 |
| scPRINT: pre-training on 50 million cells allows robust gene network predictions J Kalfon, J Samaran, G Peyré, L Cantini Nature Communications 16 (1), 3607, 2025 | 28 | 2025 |
| Assessing reproducibility of matrix factorization methods in independent transcriptomes L Cantini, U Kairov, A De Reynies, E Barillot, F Radvanyi, A Zinovyev Bioinformatics 35 (21), 4307-4313, 2019 | 26 | 2019 |
| Molecular inverse comorbidity between Alzheimer’s disease and lung cancer: New insights from matrix factorization A Greco, J Sanchez Valle, V Pancaldi, A Baudot, E Barillot, M Caselle, ... International Journal of Molecular Sciences 20 (13), 3114, 2019 | 20 | 2019 |
| Hope4Genes: a Hopfield-like class prediction algorithm for transcriptomic data L Cantini, M Caselle Scientific reports 9 (1), 337, 2019 | 20 | 2019 |
| A review of computational approaches detecting microRNAs involved in cancer L Cantini, M Caselle, A Forget, A Zinovyev, E Barillot, L Martignetti Frontiers in Bioscience 22, 1774-1791, 2017 | 18 | 2017 |
| Investigating the epi-miRNome: Identification of epi-miRNAs using transfection experiments E Reale, D Taverna, L Cantini, L Martignetti, M Osella, C De Pittà, F Virga, ... Epigenomics 11 (14), 1581-1599, 2019 | 16 | 2019 |
| Stochastic amplification of spatial modes in a system with one diffusing species L Cantini, C Cianci, D Fanelli, E Massi, L Barletti, M Asllani Journal of mathematical biology 69 (6), 1585-1608, 2014 | 15 | 2014 |
| scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features J Samaran, G Peyré, L Cantini Nature Communications 15 (1), 7762, 2024 | 12 | 2024 |
Andrei ZinovyevIn silico R&D EvotecVerified email at evotec.com
