| HPV16 E7 genetic conservation is critical to carcinogenesis L Mirabello, M Yeager, K Yu, GM Clifford, Y Xiao, B Zhu, M Cullen, ... Cell 170 (6), 1164-1174. e6, 2017 | 310 | 2017 |
| SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data CW Nelson, LH Moncla, AL Hughes Bioinformatics 31 (22), 3709-3711, 2015 | 182 | 2015 |
| Human papillomavirus genomics: Understanding carcinogenicity CW Nelson, L Mirabello Tumour virus research 15, 200258, 2023 | 165 | 2023 |
| The intersection of HPV epidemiology, genomics and mechanistic studies of HPV-mediated carcinogenesis L Mirabello, MA Clarke, CW Nelson, M Dean, N Wentzensen, M Yeager, ... Viruses 10 (2), 80, 2018 | 158 | 2018 |
| Lack of transgenerational effects of ionizing radiation exposure from the Chernobyl accident M Yeager, MJ Machiela, P Kothiyal, M Dean, C Bodelon, S Suman, ... Science 372 (6543), 725-729, 2021 | 123 | 2021 |
| Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic CW Nelson, Z Ardern, TL Goldberg, C Meng, CH Kuo, C Ludwig, ... Elife 9, e59633, 2020 | 117 | 2020 |
| Selection on haemagglutinin imposes a bottleneck during mammalian transmission of reassortant H5N1 influenza viruses PR Wilker, JM Dinis, G Starrett, M Imai, M Hatta, CW Nelson, ... Nature communications 4 (1), 2636, 2013 | 102 | 2013 |
| Within-Host Nucleotide Diversity of Virus Populations: Insights from Next-Generation Sequencing CW Nelson, AL Hughes Infection, Genetics and Evolution 30, 1-7, 2014 | 101 | 2014 |
| Plant ecological genomics at the limits of life in the Atacama Desert G Eshel, V Araus, S Undurraga, DC Soto, C Moraga, A Montecinos, ... Proceedings of the National Academy of Sciences 118 (46), e2101177118, 2021 | 93 | 2021 |
| Mutations in the HPV16 genome induced by APOBEC3 are associated with viral clearance B Zhu, Y Xiao, M Yeager, G Clifford, N Wentzensen, M Cullen, JF Boland, ... Nature communications 11 (1), 886, 2020 | 83 | 2020 |
| Selective bottlenecks shape evolutionary pathways taken during mammalian adaptation of a 1918-like avian influenza virus LH Moncla, G Zhong, CW Nelson, JM Dinis, J Mutschler, AL Hughes, ... Cell Host & Microbe 19 (2), 169-180, 2016 | 72 | 2016 |
| Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution I Jungreis, CW Nelson, Z Ardern, Y Finkel, NJ Krogan, K Sato, J Ziebuhr, ... Virology 558, 145-151, 2021 | 58 | 2021 |
| High genetic diversity and adaptive potential of two simian hemorrhagic fever viruses in a wild primate population AL Bailey, M Lauck, A Weiler, SD Sibley, JM Dinis, Z Bergman, ... PloS one 9 (3), e90714, 2014 | 48 | 2014 |
| Biosemiotic entropy of the genome: Mutations and epigenetic imbalances resulting in cancer BE Gryder, CW Nelson, SS Shepard Entropy 15 (1), 234-261, 2013 | 46 | 2013 |
| Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa JE San, S Ngcapu, AM Kanzi, H Tegally, V Fonseca, J Giandhari, ... Virus Evolution 7 (1), veab041, 2021 | 41 | 2021 |
| Arteriviruses, pegiviruses, and lentiviruses are common among wild African monkeys AL Bailey, M Lauck, RR Ghai, CW Nelson, K Heimbruch, AL Hughes, ... Journal of Virology 90 (15), 6724-6737, 2016 | 39 | 2016 |
| Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome SM Hücker, Z Ardern, T Goldberg, A Schafferhans, M Bernhofer, ... PloS one 12 (9), e0184119, 2017 | 35 | 2017 |
| Genetic variation of staphylococcal LukAB toxin determines receptor tropism SS Perelman, DBA James, KM Boguslawski, CW Nelson, JK Ilmain, ... Nature microbiology 6 (6), 731-745, 2021 | 33 | 2021 |
| OLGenie: estimating natural selection to predict functional overlapping genes CW Nelson, Z Ardern, X Wei Molecular Biology and Evolution 37 (8), 2440-2449, 2020 | 30 | 2020 |
| Computational evolution experiments reveal a net loss of genetic information despite selection CW Nelson, JC Sanford Biological Information: New Perspectives, 338-368, 2013 | 22 | 2013 |
Zachary ArdernPostdoctoral Fellow (SEED), Wellcome Sanger Institute, Cambridge, UKVerified email at sanger.ac.uk
