| A rhesus macaque model of Asian-lineage Zika virus infection DM Dudley, MT Aliota, EL Mohr, AM Weiler, G Lehrer-Brey, KL Weisgrau, ... Nature communications 7 (1), 12204, 2016 | 464 | 2016 |
| A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes CP Arevalo, MJ Bolton, V Le Sage, N Ye, C Furey, H Muramatsu, ... Science 378 (6622), 899-904, 2022 | 366 | 2022 |
| The global H5N1 influenza panzootic in mammals TP Peacock, L Moncla, G Dudas, D VanInsberghe, K Sukhova, ... Nature 637 (8045), 304-313, 2025 | 339 | 2025 |
| Cryptic transmission of SARS-CoV-2 in Washington state T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ... Science 370 (6516), 571-575, 2020 | 325 | 2020 |
| SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data CW Nelson, LH Moncla, AL Hughes Bioinformatics 31 (22), 3709-3711, 2015 | 181 | 2015 |
| Within-host evolution of human influenza virus KS Xue, LH Moncla, T Bedford, JD Bloom Trends in microbiology 26 (9), 781-793, 2018 | 139 | 2018 |
| Acute SARS-CoV-2 infections harbor limited within-host diversity and transmit via tight transmission bottlenecks KM Braun, GK Moreno, C Wagner, MA Accola, WM Rehrauer, DA Baker, ... PLoS pathogens 17 (8), e1009849, 2021 | 137 | 2021 |
| Deep sequencing reveals potential antigenic variants at low frequencies in influenza A virus-infected humans JM Dinis, KR Florek, OO Fatola, LH Moncla, JP Mutschler, OK Charlier, ... Journal of virology 90 (7), 3355-3365, 2016 | 124 | 2016 |
| Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State NF Müller, C Wagner, CD Frazar, P Roychoudhury, J Lee, LH Moncla, ... Science Translational Medicine 13 (595), eabf0202, 2021 | 100* | 2021 |
| Comprehensive mapping of adaptation of the avian influenza polymerase protein PB2 to humans YQS Soh, LH Moncla, R Eguia, T Bedford, JD Bloom Elife 8, e45079, 2019 | 76 | 2019 |
| Selective bottlenecks shape evolutionary pathways taken during mammalian adaptation of a 1918-like avian influenza virus LH Moncla, G Zhong, CW Nelson, JM Dinis, J Mutschler, AL Hughes, ... Cell Host & Microbe 19 (2), 169-180, 2016 | 72 | 2016 |
| Deep mutational scanning of H5 hemagglutinin to inform influenza virus surveillance B Dadonaite, JJ Ahn, JT Ort, J Yu, C Furey, A Dosey, WW Hannon, ... PLoS biology 22 (11), e3002916, 2024 | 71 | 2024 |
| A novel nonhuman primate model for influenza transmission LH Moncla, TM Ross, JM Dinis, JT Weinfurter, TD Mortimer, ... PloS one 8 (11), e78750, 2013 | 61 | 2013 |
| A single mutation in the VP1 of enterovirus 71 is responsible for increased virulence and neurotropism in adult interferon-deficient mice EA Caine, LH Moncla, MD Ronderos, TC Friedrich, JE Osorio Journal of virology 90 (19), 8592-8604, 2016 | 57 | 2016 |
| Influenza A (H5N1) immune response among ferrets with influenza A (H1N1) pdm09 immunity V Le Sage, BD Werner, GA Merrbach, SE Petnuch, AK O’Connell, ... Emerging Infectious Diseases 31 (3), 477, 2025 | 46* | 2025 |
| Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia LH Moncla, T Bedford, P Dussart, SV Horm, S Rith, P Buchy, EA Karlsson, ... PLoS Pathogens 16 (1), e1008191, 2020 | 37 | 2020 |
| Preliminary report on genomic epidemiology of the 2024 H5N1 influenza A virus outbreak in US cattle (Part 1 of 2) M Worobey, K Gangavarapu, JE Pekar, JB Joy, L Moncla, MUG Kraemer, ... Virological. org, 2024 | 31 | 2024 |
| SARS-CoV-2 evolution during prolonged infection in immunocompromised patients AD Marques, J Graham-Wooten, AS Fitzgerald, A Sobel Leonard, ... MBio 15 (3), e00110-24, 2024 | 31 | 2024 |
| Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia A Black, LH Moncla, K Laiton-Donato, B Potter, L Pardo, A Rico, C Tovar, ... BMC infectious diseases 19 (1), 963, 2019 | 31 | 2019 |
| A rhesus macaque model of Asian-lineage Zika virus infection. Nat Commun 7: 12204 DM Dudley, MT Aliota, EL Mohr, AM Weiler, G Lehrer-Brey, KL Weisgrau, ... | 31 | 2016 |
