| P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure R Krivák, D Hoksza Journal of cheminformatics 10 (1), 39, 2018 | 597 | 2018 |
| PrankWeb: a web server for ligand binding site prediction and visualization L Jendele, R Krivak, P Skoda, M Novotny, D Hoksza Nucleic acids research 47 (W1), W345-W349, 2019 | 495 | 2019 |
| PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures D Jakubec, P Skoda, R Krivak, M Novotny, D Hoksza Nucleic Acids Research 50 (W1), W593-W597, 2022 | 196 | 2022 |
| PDBe-KB: a community-driven resource for structural and functional annotations M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ... Nucleic Acids Research 48 (D1), D344-D353, 2020 | 105 | 2020 |
| Improving protein-ligand binding site prediction accuracy by classification of inner pocket points using local features R Krivák, D Hoksza Journal of cheminformatics 7 (1), 12, 2015 | 94 | 2015 |
| PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022 | 58 | 2022 |
| PrankWeb 4: a modular web server for protein–ligand binding site prediction and downstream analysis L Polák, P Škoda, K Riedlová, R Krivák, M Novotný, D Hoksza Nucleic Acids Research, gkaf421, 2025 | 20 | 2025 |
| P2RANK: Knowledge-based ligand binding site prediction using aggregated local features R Krivák, D Hoksza International Conference on Algorithms for Computational Biology, 41-52, 2015 | 20 | 2015 |
| AHoJ: rapid, tailored search and retrieval of apo and holo protein structures for user-defined ligands CP Feidakis, R Krivak, D Hoksza, M Novotny Bioinformatics 38 (24), 5452-5453, 2022 | 14 | 2022 |
| Peptide-Binding site prediction from protein structure via points on the solvent accessible surface R Krivák, L Jendele, D Hoksza Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | 14 | 2018 |
| CryptoBench: cryptic protein–ligand binding sites dataset and benchmark V Škrhák, M Novotný, CP Feidakis, R Krivák, D Hoksza Bioinformatics 41 (1), btae745, 2025 | 12 | 2025 |
| AHoJ-DB: A PDB-Wide Assignment of Apo & Holo Relationships Based on Individual Protein–Ligand Interactions CP Feidakis, R Krivak, D Hoksza, M Novotny Journal of Molecular Biology 436 (17), 168545, 2024 | 10 | 2024 |
| Improving quality of ligand-binding site prediction with Bayesian optimization R Krivák, D Hoksza, P Škoda 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017 | 5 | 2017 |
| Cryptobench V Škrhák, D Hoksza Aug, 2024 | 2 | 2024 |
| Supplementary material for PrankWeb: web server for ligand binding site prediction and visualization L Jendele, R Krivak, P Skoda, M Novotny, D Hoksza Proteins 420, 4009, 0 | 1 | |
David HokszaCharles UniversityVerified email at matfyz.cuni.cz
