| PrankWeb: a web server for ligand binding site prediction and visualization L Jendele, R Krivak, P Skoda, M Novotny, D Hoksza Nucleic acids research 47 (W1), W345-W349, 2019 | 495 | 2019 |
| PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures D Jakubec, P Skoda, R Krivak, M Novotny, D Hoksza Nucleic Acids Research 50 (W1), W593-W597, 2022 | 196 | 2022 |
| PDBe-KB: a community-driven resource for structural and functional annotations M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ... Nucleic Acids Research, 2019 | 105 | 2019 |
| PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022 | 58 | 2022 |
| Molpher: a software framework for systematic chemical space exploration D Hoksza, P Škoda, M Voršilák, D Svozil J Cheminform 3, 32, 2014 | 54 | 2014 |
| Survey of tools for Linked Data consumption J Klímek, P Škoda, M Nečaský Semantic Web 10 (4), 665-720, 2019 | 52 | 2019 |
| LinkedPipes ETL: Evolved linked data preparation J Klímek, P Škoda, M Nečaský European Semantic Web Conference, 95-100, 2016 | 40 | 2016 |
| Knowledge graphs for the life sciences: Recent developments, challenges and opportunities J Chen, H Dong, J Hastings, E Jiménez-Ruiz, V López, P Monnin, ... arXiv preprint arXiv:2309.17255, 2023 | 37 | 2023 |
| UnifiedViews: An ETL framework for sustainable RDF data processing T Knap, M Kukhar, B Macháč, P Škoda, J Tomeš, J Vojt The Semantic Web: ESWC 2014 Satellite Events: ESWC 2014 Satellite Events …, 2014 | 32 | 2014 |
| UnifiedViews: Towards ETL Tool for Simple yet Powerfull RDF Data Management⋆ T Knap, P Škoda, J Klımek, M Necaský | 23 | 2015 |
| UnifiedViews: an ETL tool for RDF data management T Knap, P Hanečák, J Klímek, C Mader, M Nečaský, B Van Nuffelen, ... Semantic Web 9 (5), 661-676, 2018 | 22 | 2018 |
| PrankWeb 4: a modular web server for protein–ligand binding site prediction and downstream analysis L Polák, P Škoda, K Riedlová, R Krivák, M Novotný, D Hoksza Nucleic Acids Research, gkaf421, 2025 | 20 | 2025 |
| LinkedPipes ETL in use: practical publication and consumption of linked data J Klímek, P Škoda Proceedings of the 19th International Conference on Information Integration …, 2017 | 20 | 2017 |
| Enhancing Domain Modeling with Pre-trained Large Language Models: An Automated Assistant for Domain Modelers D Prokop, Š Stenchlák, P Škoda, J Klímek, M Nečaský International Conference on Conceptual Modeling, 235-253, 2024 | 15 | 2024 |
| Benchmarking platform for ligand-based virtual screening P Škoda, D Hoksza 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016 | 15 | 2016 |
| Requirements on Linked Data Consumption Platform. J Klímek, P Skoda, M Necaský LDOW@ WWW, 2016 | 13 | 2016 |
| Exploration of topological torsion fingerprints P Skoda, D Hoksza Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on …, 2015 | 13* | 2015 |
| Open dataset discovery using context-enhanced similarity search D Bernhauer, M Nečaský, P Škoda, J Klímek, T Skopal Knowledge and Information Systems 64 (12), 3265-3291, 2022 | 12 | 2022 |
| Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites J Jelínek, P Škoda, D Hoksza Computational Advances in Bio and Medical Sciences (ICCABS), 2016 IEEE 6th …, 2016 | 11 | 2016 |
| Semantic web: Past, present, and future A Scherp, G Groener, P Škoda, K Hose, ME Vidal arXiv preprint arXiv:2412.17159, 2024 | 10 | 2024 |
David HokszaCharles UniversityVerified email at matfyz.cuni.cz
