| Wisdom of crowds for robust gene network inference GS Daniel Marbach, James C Costello, Robert Küffner, Nicole M Vega, Robert J ... Nature Methods 9 (2012), 796-804, 0 | 2040* | |
| RelEx—Relation extraction using dependency parse trees K Fundel, R Küffner, R Zimmer Bioinformatics 23 (3), 365-371, 2007 | 860 | 2007 |
| High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay L Dölken, Z Ruzsics, B Rädle, CC Friedel, R Zimmer, J Mages, ... Rna 14 (9), 1959-1972, 2008 | 524 | 2008 |
| The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors S Pfefferle, J Schöpf, M Kögl, CC Friedel, MA Müller, J Carbajo-Lozoya, ... PLoS pathogens 7 (10), e1002331, 2011 | 490 | 2011 |
| ProMiner: rule-based protein and gene entity recognition D Hanisch, K Fundel, HT Mevissen, R Zimmer, J Fluck BMC bioinformatics 6 (Suppl 1), S14, 2005 | 451 | 2005 |
| Large‐scale gene expression profiling reveals major pathogenetic pathways of cartilage degeneration in osteoarthritis T Aigner, K Fundel, J Saas, PM Gebhard, J Haag, T Weiss, A Zien, ... Arthritis & Rheumatism: Official Journal of the American College of …, 2006 | 434 | 2006 |
| Co-clustering of biological networks and gene expression data D Hanisch, A Zien, R Zimmer, T Lengauer Bioinformatics 18 (suppl_1), S145-S154, 2002 | 419 | 2002 |
| Widespread disruption of host transcription termination in HSV-1 infection AJ Rutkowski, F Erhard, A L’Hernault, T Bonfert, M Schilhabel, C Crump, ... Nature communications 6 (1), 7126, 2015 | 307 | 2015 |
| Conserved principles of mammalian transcriptional regulation revealed by RNA half-life CC Friedel, L Dölken, Z Ruzsics, UH Koszinowski, R Zimmer Nucleic acids research 37 (17), e115-e115, 2009 | 286 | 2009 |
| Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome A von Brunn, C Teepe, JC Simpson, R Pepperkok, CC Friedel, R Zimmer, ... PloS one 2 (5), e459, 2007 | 277 | 2007 |
| Systematic analysis of viral and cellular microRNA targets in cells latently infected with human γ-herpesviruses by RISC immunoprecipitation assay L Dölken, G Malterer, F Erhard, S Kothe, CC Friedel, G Suffert, ... Cell host & microbe 7 (4), 324-334, 2010 | 264 | 2010 |
| Degradation of Cellular miR-27 by a Novel, Highly Abundant Viral Transcript Is Important for Efficient Virus Replication In Vivo L Marcinowski, M Tanguy, A Krmpotic, B Rädle, VJ Lisnić, L Tuddenham, ... PLoS pathogens 8 (2), e1002510, 2012 | 245 | 2012 |
| Evolutionarily conserved herpesviral protein interaction networks E Fossum, CC Friedel, SV Rajagopala, B Titz, A Baiker, T Schmidt, ... PLoS pathogens 5 (9), e1000570, 2009 | 240 | 2009 |
| Resolving lipid mediators maresin 1 and resolvin D2 prevent atheroprogression in mice JR Viola, P Lemnitzer, Y Jansen, G Csaba, C Winter, C Neideck, ... Circulation research 119 (9), 1030-1038, 2016 | 239 | 2016 |
| Improved Ribo-seq enables identification of cryptic translation events F Erhard, A Halenius, C Zimmermann, A L'Hernault, DJ Kowalewski, ... Nature methods 15 (5), 363-366, 2018 | 233 | 2018 |
| Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer W Fischer, L Windhager, S Rohrer, M Zeiller, A Karnholz, R Hoffmann, ... Nucleic acids research 38 (18), 6089-6101, 2010 | 223 | 2010 |
| Fast protein fold recognition via sequence to structure alignment and contact capacity potentials NN Alexandrov, R Nussinov, RM Zimmer Pac. Symp. Biocomput 96, 53-72, 1996 | 205 | 1996 |
| Pathway analysis in metabolic databases via differential metabolic display (DMD) R Küffner, R Zimmer, T Lengauer Bioinformatics 16 (9), 825-836, 2000 | 198 | 2000 |
| Comparison of the chondrosarcoma cell line SW1353 with primary human adult articular chondrocytes with regard to their gene expression profile and reactivity to IL-1β M Gebauer, J Saas, F Sohler, J Haag, S Söder, M Pieper, E Bartnik, ... Osteoarthritis and cartilage 13 (8), 697-708, 2005 | 181 | 2005 |
| Playing biology's name game: identifying protein names in scientific text D Hanisch, J Fluck, HT Mevissen, R Zimmer Biocomputing 2003, 403-414, 2002 | 176 | 2002 |
Robert KueffnerVerified email at bio.ifi.lmu.de
